AlfalfaGEDB | Msa0524450

M. sativa cultivar zhongmu-4 / Msa0524450

KEGG: K02932|K03327
GO: GO:0000027 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006810 GO:0006913 GO:0006996 GO:0007275 GO:0007389 GO:0008097 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009955 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990904
PFAM: PF17144.7

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0524450	KAF5201065.1	82.960	223	38	0	1	223	1	223	1.58e-138	397

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0524450	sp\|P49227\|RL52_ARATH	77.679	224	43	1	1	217	1	224	5.23e-125	358

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0524450	A0A7J6WWZ9	82.960	223	38	0	1	223	1	223	7.54e-139	397

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001390	Msa0524450	0.993662	2.561440e-201	-8.615850e-47
Msa0373350	Msa0524450	0.833143	6.315188e-56	-8.615850e-47
Msa0421920	Msa0524450	0.826490	2.636955e-54	-8.615850e-47
Msa0270160	Msa0524450	0.805398	1.361213e-49	-8.615850e-47
Msa0524340	Msa0524450	0.952376	2.767136e-110	-8.615850e-47
Msa0524450	Msa0578010	0.802560	5.294543e-49	-8.615850e-47
Msa0524450	Msa1126690	0.812967	3.247730e-51	-8.615850e-47
Msa0524450	Msa1245270	0.833545	5.014643e-56	-8.615850e-47
Msa0524450	Msa1367540	0.874025	9.317899e-68	-8.615850e-47
Msa0524450	Msa1403520	0.810273	1.251206e-50	-8.615850e-47
Msa0524450	Msa1424570	0.892741	1.200159e-74	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0524450	MtrunA17_Chr3g0145691	97.970	197	4	0	1	197	1	197	2.26e-141	397
Msa0524450	MtrunA17_Chr8g0347691	91.371	197	17	0	1	197	1	197	1.80e-133	377
Msa0524450	MtrunA17_Chr4g0006821	42.609	115	38	2	126	212	10	124	1.71e-19	81.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0524450	AT5G39740.2	77.679	224	43	1	1	217	1	224	5.31e-126	358
Msa0524450	AT5G39740.1	77.679	224	43	1	1	217	1	224	5.31e-126	358
Msa0524450	AT3G25520.3	77.679	224	43	1	1	217	1	224	1.60e-125	357
Msa0524450	AT3G25520.1	77.679	224	43	1	1	217	1	224	1.60e-125	357
Msa0524450	AT3G25520.2	73.214	112	23	1	113	217	2	113	8.29e-52	166

Find 106 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCGAACAACGTAACGGTATT+TGG	0.124401	3_4:+77907408	None:intergenic
AGAAATTATATTCTGGATTC+TGG	0.196770	3_4:+77905904	None:intergenic
GAGTTGGCCTAGATCAATTT+TGG	0.256726	3_4:-77905769	Msa0524450:three_prime_UTR
TGCACCAAAGACCCGGTTTC+CGG	0.261045	3_4:+77906862	None:intergenic
ATGTTATCATTATACTGTTT+GGG	0.270970	3_4:-77905864	Msa0524450:three_prime_UTR
TTATTGCACTGGTCTCCTTT+TGG	0.304693	3_4:-77907100	Msa0524450:CDS
CCTCGTAGGTGAGCTTCTTC+AGG	0.308472	3_4:+77906151	None:intergenic
ACTTTAGATTATATCAGTTT+TGG	0.314688	3_4:-77905975	Msa0524450:three_prime_UTR
AGGATGACGATGAGTGAAAT+TGG	0.318851	3_4:-77906065	Msa0524450:exon
TATGTTATCATTATACTGTT+TGG	0.322769	3_4:-77905865	Msa0524450:three_prime_UTR
GGCTTCAGGGAGCTTTGGAC+GGG	0.327426	3_4:-77906756	Msa0524450:intron
ACCACCGGAAACCGGGTCTT+TGG	0.336386	3_4:-77906866	Msa0524450:CDS
CACCTTCGACCGCGGCTGTC+TGG	0.353769	3_4:+77907683	None:intergenic
ATTGTCTCTGCTACCATTGC+TGG	0.361362	3_4:-77907287	Msa0524450:CDS
AGTTCTTAAAACTCTTGAAA+TGG	0.366221	3_4:-77907070	Msa0524450:CDS
TCTTGGGCTGCCTTTGCCTA+CGG	0.372098	3_4:+77907769	None:intergenic
CACAGCGACAAAAGGTTTGC+TGG	0.383857	3_4:-77906718	Msa0524450:CDS
CGAACAACGTAACGGTATTT+GGG	0.383918	3_4:+77907409	None:intergenic
CTTGGGCTGCCTTTGCCTAC+GGG	0.385408	3_4:+77907770	None:intergenic
TTAAGACCACCACCGGAAAC+CGG	0.405019	3_4:-77906874	Msa0524450:CDS
TGTTTGGCTTCAGGGAGCTT+TGG	0.408256	3_4:-77906761	Msa0524450:intron
AACAGCAAGAAATTATATTC+TGG	0.418184	3_4:+77905897	None:intergenic
CCGAATGGGTGGTGGGTGAT+TGG	0.423400	3_4:+77907652	None:intergenic
GAGAGCACGGAATGGCCTCC+TGG	0.423509	3_4:+77906913	None:intergenic
AAAAGATCCAAAATTGATCT+AGG	0.423761	3_4:+77905762	None:intergenic
TTCCGATTCCGAATGGGTGG+TGG	0.437998	3_4:+77907644	None:intergenic
TGGCTTCAGGGAGCTTTGGA+CGG	0.456348	3_4:-77906757	Msa0524450:intron
CATAGTTAGTAAGGCCTACA+TGG	0.460963	3_4:+77907213	None:intergenic
CCTCACTTTGGCCTCCATGT+AGG	0.463629	3_4:-77907227	Msa0524450:CDS
AAAGACCCGGTTTCCGGTGG+TGG	0.468463	3_4:+77906868	None:intergenic
ACCCACCACCCATTCGGAAT+CGG	0.470171	3_4:-77907646	Msa0524450:five_prime_UTR
TTCCGTGCTCTCCTTGATGT+TGG	0.475927	3_4:-77906902	Msa0524450:CDS
TCTTATATTACTCAGGCAAC+CGG	0.479611	3_4:-77906965	Msa0524450:intron
AGATTGTAGGCCAGCTAGGT+TGG	0.483927	3_4:+77905719	None:intergenic
ACGGGCCTCGTCACTTTATG+TGG	0.485014	3_4:+77907788	None:intergenic
GCTTCAGGGAGCTTTGGACG+GGG	0.489494	3_4:-77906755	Msa0524450:intron
ATACCGTTACGTTGTTCGAT+TGG	0.490656	3_4:-77907404	Msa0524450:intron
TACCTGCAGCATAGTTAGTA+AGG	0.490657	3_4:+77907204	None:intergenic
ATTTGTATTTCCAACCTAGC+TGG	0.494722	3_4:-77905729	Msa0524450:three_prime_UTR
CTTCAGGGAGCTTTGGACGG+GGG	0.497730	3_4:-77906754	Msa0524450:intron
TAAGAACTCGGCGAGCCAAA+AGG	0.499289	3_4:+77907085	None:intergenic
ACTCAAGACGCTAACAAATA+CGG	0.500093	3_4:-77907436	Msa0524450:CDS
CCAATCACCCACCACCCATT+CGG	0.501475	3_4:-77907652	Msa0524450:five_prime_UTR
GAAATTCAAGAGAAGAAGAG+AGG	0.503110	3_4:-77907494	Msa0524450:CDS
ACAGCCGCGGTCGAAGGTGC+GGG	0.506236	3_4:-77907679	Msa0524450:five_prime_UTR
AGCTTGATGCTGAGGTTCAC+CGG	0.506705	3_4:-77906675	Msa0524450:CDS
CTTTGTCTTTCTTTCCTCGT+AGG	0.506933	3_4:+77906137	None:intergenic
CAAGCTCTCAATTCTGCAGC+CGG	0.507707	3_4:-77906099	Msa0524450:CDS
GTCATCCTCATCATCATCTC+CGG	0.510253	3_4:+77906080	None:intergenic
ATATTCCTCACAGCGACAAA+AGG	0.513989	3_4:-77906726	Msa0524450:CDS
GTACCATTCCGATTCCGAAT+GGG	0.517511	3_4:+77907638	None:intergenic
ATGTTACCAGCTTATTGCAC+TGG	0.517859	3_4:-77907111	Msa0524450:intron
CTGTGGAACCAGCTGACTCC+AGG	0.519286	3_4:-77906931	Msa0524450:CDS
GTTGATTCAGGCATTTGTGA+AGG	0.519616	3_4:-77907554	Msa0524450:intron
GACAGCCGCGGTCGAAGGTG+CGG	0.523616	3_4:-77907680	Msa0524450:five_prime_UTR
GACGATGAGTGAAATTGGGT+TGG	0.523666	3_4:-77906060	Msa0524450:exon
CCGGGTCTTTGGTGCACTCA+AGG	0.524232	3_4:-77906855	Msa0524450:intron
AAATTCAAGAGAAGAAGAGA+GGG	0.524882	3_4:-77907493	Msa0524450:CDS
AATGGCCTCCTGGAGTCAGC+TGG	0.528100	3_4:+77906923	None:intergenic
CACCAGACAGCCGCGGTCGA+AGG	0.530457	3_4:-77907685	Msa0524450:five_prime_UTR
TTGAGTAATCAAACGAACTC+TGG	0.530507	3_4:+77907453	None:intergenic
ACGATGAGTGAAATTGGGTT+GGG	0.531052	3_4:-77906059	Msa0524450:exon
GCACATGAGCTTCCTCACTT+TGG	0.534108	3_4:-77907239	Msa0524450:CDS
GGATGACGATGAGTGAAATT+GGG	0.538515	3_4:-77906064	Msa0524450:exon
AAATCGAAACAAGTCTATCC+AGG	0.542261	3_4:+77905940	None:intergenic
TGTTATCATTATACTGTTTG+GGG	0.542461	3_4:-77905863	Msa0524450:three_prime_UTR
AATGAGATTGTAGGCCAGCT+AGG	0.542596	3_4:+77905715	None:intergenic
GAAATGGATGATCAGTATGA+AGG	0.545359	3_4:-77907054	Msa0524450:CDS
AACTGTCGGAATTTGTGAGT+TGG	0.547764	3_4:-77905785	Msa0524450:three_prime_UTR
GTGACGAGGCCCGTAGGCAA+AGG	0.553912	3_4:-77907779	Msa0524450:five_prime_UTR
GGTCTTGTTAAGACCACCAC+CGG	0.557334	3_4:-77906881	Msa0524450:CDS
TTCCACAGAATAATCCTCTC+CGG	0.558152	3_4:+77906946	None:intergenic
AGGAAATTCAAGCTAAACAA+TGG	0.558533	3_4:+77906028	None:intergenic
CCTTGAGTGCACCAAAGACC+CGG	0.561480	3_4:+77906855	None:intergenic
TCCGATTCCGAATGGGTGGT+GGG	0.565668	3_4:+77907645	None:intergenic
GGCCTTACTAACTATGCTGC+AGG	0.566671	3_4:-77907206	Msa0524450:intron
GAAATCACCTTGCCTTGTGG+TGG	0.569736	3_4:+77905692	None:intergenic
TAAGACCACCACCGGAAACC+GGG	0.570064	3_4:-77906873	Msa0524450:CDS
TTGTGGTGGAATGAGATTGT+AGG	0.574520	3_4:+77905706	None:intergenic
CGTACCATTCCGATTCCGAA+TGG	0.575768	3_4:+77907637	None:intergenic
TAATCAAACGAACTCTGGCT+CGG	0.582000	3_4:+77907458	None:intergenic
AAGAACAATATCACCAGCAA+TGG	0.583771	3_4:+77907274	None:intergenic
CCACCCATTCGGAATCGGAA+TGG	0.587704	3_4:-77907641	Msa0524450:intron
CGAGGAAAGAAAGACAAAGT+TGG	0.591281	3_4:-77906133	Msa0524450:CDS
TTCTCTGCACCAGACAGCCG+CGG	0.593497	3_4:-77907692	Msa0524450:five_prime_UTR
TCTCATTCCACCACAAGGCA+AGG	0.593883	3_4:-77905699	Msa0524450:three_prime_UTR
GACCAACATCAAGGAGAGCA+CGG	0.604422	3_4:+77906900	None:intergenic
TTACCAATCGAACAACGTAA+CGG	0.610329	3_4:+77907401	None:intergenic
GTTATCATTATACTGTTTGG+GGG	0.616333	3_4:-77905862	Msa0524450:three_prime_UTR
TCTTAACAAGACCAACATCA+AGG	0.618405	3_4:+77906891	None:intergenic
ACTGCCCGCACCTTCGACCG+CGG	0.619628	3_4:+77907675	None:intergenic
ACCAAAGACCCGGTTTCCGG+TGG	0.622290	3_4:+77906865	None:intergenic
TACAATCTCATTCCACCACA+AGG	0.626292	3_4:-77905704	Msa0524450:three_prime_UTR
CCATTCCGATTCCGAATGGG+TGG	0.629206	3_4:+77907641	None:intergenic
CATAAAGTGACGAGGCCCGT+AGG	0.633384	3_4:-77907785	Msa0524450:five_prime_UTR
TCAGAAATCACCTTGCCTTG+TGG	0.649160	3_4:+77905689	None:intergenic
ACATCAAGGAGAGCACGGAA+TGG	0.653230	3_4:+77906905	None:intergenic
TGCAGCCGGAGATGATGATG+AGG	0.670180	3_4:-77906085	Msa0524450:CDS
TATTACTCAGGCAACCGGAG+AGG	0.678581	3_4:-77906960	Msa0524450:intron
TGGAACCAGCTGACTCCAGG+AGG	0.680812	3_4:-77906928	Msa0524450:CDS
CCTACATGGAGGCCAAAGTG+AGG	0.682005	3_4:+77907227	None:intergenic
AGTTAGTAAGGCCTACATGG+AGG	0.688944	3_4:+77907216	None:intergenic
AACCGGAGAGGATTATTCTG+TGG	0.701124	3_4:-77906948	Msa0524450:CDS
CCTGAAGAAGCTCACCTACG+AGG	0.707001	3_4:-77906151	Msa0524450:CDS
TCAGTATGAAGGCAATGTTG+AGG	0.719344	3_4:-77907043	Msa0524450:intron
AGTGTCCACATAAAGTGACG+AGG	0.738233	3_4:-77907793	Msa0524450:five_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TACAAATTAAAAAAATGAAA+AGG	+	chr3_4:77906825-77906844	None:intergenic	10.0%
!!!	TTTCATTTTTTTAATTTGTA+AGG	-	chr3_4:77906825-77906844	Msa0524450:intron	10.0%
!!	AAAAAAAAAAAAAAAACTGT+CGG	-	chr3_4:77907608-77907627	Msa0524450:intron	10.0%
!!	TACAAATTAAAAAAATGAAA+AGG	+	chr3_4:77906825-77906844	None:intergenic	10.0%
!!!	TTTCATTTTTTTAATTTGTA+AGG	-	chr3_4:77906825-77906844	Msa0524450:intron	10.0%
!!	AAAAAAAAAAAAAAAACTGT+CGG	-	chr3_4:77907608-77907627	Msa0524450:intron	10.0%
!!!	TAATTATATGGATTAAAAAG+AGG	+	chr3_4:77906257-77906276	None:intergenic	15.0%
!!!	CGATTAATTTGATAATTATA+TGG	+	chr3_4:77906269-77906288	None:intergenic	15.0%
!!	TGACATTGATATTTATTAAT+CGG	-	chr3_4:77906620-77906639	Msa0524450:intron	15.0%
!!!	AGTTTTTTTTTTTTTTTTGC+TGG	+	chr3_4:77907606-77907625	None:intergenic	15.0%
!!!	TAATTATATGGATTAAAAAG+AGG	+	chr3_4:77906257-77906276	None:intergenic	15.0%
!!!	CGATTAATTTGATAATTATA+TGG	+	chr3_4:77906269-77906288	None:intergenic	15.0%
!!	TGACATTGATATTTATTAAT+CGG	-	chr3_4:77906620-77906639	Msa0524450:intron	15.0%
!!!	AGTTTTTTTTTTTTTTTTGC+TGG	+	chr3_4:77907606-77907625	None:intergenic	15.0%
!!!	AGTTAAAAGAGAGTTTTTTA+GGG	+	chr3_4:77905668-77905687	None:intergenic	20.0%
!!	GACATTGATATTTATTAATC+GGG	-	chr3_4:77906621-77906640	Msa0524450:intron	20.0%
!!	TGTTCAAATAATGTCTTTAT+TGG	-	chr3_4:77906797-77906816	Msa0524450:intron	20.0%
!!	GTTCAAATAATGTCTTTATT+GGG	-	chr3_4:77906798-77906817	Msa0524450:intron	20.0%
!!!	ATTTTTTTTGTAGACATTGA+TGG	-	chr3_4:77906895-77906914	Msa0524450:CDS	20.0%
!!	AAATACTACTAATTCAAACA+GGG	+	chr3_4:77907137-77907156	None:intergenic	20.0%
!!	CAACAAAAATTTAACGATTA+AGG	+	chr3_4:77907402-77907421	None:intergenic	20.0%
!!!	ACTTTAGATTATATCAGTTT+TGG	-	chr3_4:77907432-77907451	Msa0524450:CDS	20.0%
!!	TATGTTATCATTATACTGTT+TGG	-	chr3_4:77907542-77907561	Msa0524450:CDS	20.0%
!!	ATGTTATCATTATACTGTTT+GGG	-	chr3_4:77907543-77907562	Msa0524450:CDS	20.0%
!!!	ATCAATTTTGGATCTTTTAT+TGG	-	chr3_4:77907650-77907669	Msa0524450:five_prime_UTR	20.0%
!!!	AGTTAAAAGAGAGTTTTTTA+GGG	+	chr3_4:77905668-77905687	None:intergenic	20.0%
!!	GACATTGATATTTATTAATC+GGG	-	chr3_4:77906621-77906640	Msa0524450:intron	20.0%
!!	TGTTCAAATAATGTCTTTAT+TGG	-	chr3_4:77906797-77906816	Msa0524450:intron	20.0%
!!	GTTCAAATAATGTCTTTATT+GGG	-	chr3_4:77906798-77906817	Msa0524450:intron	20.0%
!!!	ATTTTTTTTGTAGACATTGA+TGG	-	chr3_4:77906895-77906914	Msa0524450:CDS	20.0%
!!	AAATACTACTAATTCAAACA+GGG	+	chr3_4:77907137-77907156	None:intergenic	20.0%
!!	CAACAAAAATTTAACGATTA+AGG	+	chr3_4:77907402-77907421	None:intergenic	20.0%
!!!	ACTTTAGATTATATCAGTTT+TGG	-	chr3_4:77907432-77907451	Msa0524450:CDS	20.0%
!!	TATGTTATCATTATACTGTT+TGG	-	chr3_4:77907542-77907561	Msa0524450:CDS	20.0%
!!	ATGTTATCATTATACTGTTT+GGG	-	chr3_4:77907543-77907562	Msa0524450:CDS	20.0%
!!!	ATCAATTTTGGATCTTTTAT+TGG	-	chr3_4:77907650-77907669	Msa0524450:five_prime_UTR	20.0%
!!!	CAGTTAAAAGAGAGTTTTTT+AGG	+	chr3_4:77905669-77905688	None:intergenic	25.0%
!!	CTAAAAAACTCTCTTTTAAC+TGG	-	chr3_4:77905667-77905686	Msa0524450:three_prime_UTR	25.0%
!	GTTAGTTAGTTAGTTAAAAG+AGG	+	chr3_4:77905821-77905840	None:intergenic	25.0%
!!!	TAAAGAATGTTTGTTGATTC+AGG	-	chr3_4:77905841-77905860	Msa0524450:three_prime_UTR	25.0%
!	TAGGGATTGAAAATTAAGTA+TGG	+	chr3_4:77906050-77906069	None:intergenic	25.0%
!!!	AGTAATAATGGTTTTGGTTA+GGG	+	chr3_4:77906068-77906087	None:intergenic	25.0%
!!!	TAGTAATAATGGTTTTGGTT+AGG	+	chr3_4:77906069-77906088	None:intergenic	25.0%
!!	ACAAGTAGTAATAATGGTTT+TGG	+	chr3_4:77906074-77906093	None:intergenic	25.0%
!	TTGTCTACAAGTAGTAATAA+TGG	+	chr3_4:77906080-77906099	None:intergenic	25.0%
!!!	TTTCAAGAGTTTTAAGAACT+CGG	+	chr3_4:77906337-77906356	None:intergenic	25.0%
!	AGTTCTTAAAACTCTTGAAA+TGG	-	chr3_4:77906337-77906356	Msa0524450:intron	25.0%
!	GAGTAATATAAGACATACAA+AGG	+	chr3_4:77906435-77906454	None:intergenic	25.0%
!	TTGTATGTCTTATATTACTC+AGG	-	chr3_4:77906435-77906454	Msa0524450:intron	25.0%
!!	ATTTATTAATCGGGTTTGTT+TGG	-	chr3_4:77906630-77906649	Msa0524450:intron	25.0%
!	ATTTGAACATACCTTCATAT+AGG	+	chr3_4:77906786-77906805	None:intergenic	25.0%
!!!	AAATGGGTTTGATATTTTTC+AGG	+	chr3_4:77906929-77906948	None:intergenic	25.0%
!	CTTGATATATTCACTGAAAT+GGG	+	chr3_4:77906945-77906964	None:intergenic	25.0%
!!	GACTATTTACTATTGATGAT+TGG	-	chr3_4:77907099-77907118	Msa0524450:CDS	25.0%
!	GAAATACTACTAATTCAAAC+AGG	+	chr3_4:77907138-77907157	None:intergenic	25.0%
!!	CGTTAAATTTTTGTTGCATA+TGG	-	chr3_4:77907406-77907425	Msa0524450:CDS	25.0%
!!!	ATTATATCAGTTTTGGACTA+TGG	-	chr3_4:77907439-77907458	Msa0524450:CDS	25.0%
!	AGAAATTATATTCTGGATTC+TGG	+	chr3_4:77907506-77907525	None:intergenic	25.0%
!	AACAGCAAGAAATTATATTC+TGG	+	chr3_4:77907513-77907532	None:intergenic	25.0%
!	TGTTATCATTATACTGTTTG+GGG	-	chr3_4:77907544-77907563	Msa0524450:CDS	25.0%
!	AAAAGATCCAAAATTGATCT+AGG	+	chr3_4:77907648-77907667	None:intergenic	25.0%
!!!	CAGTTAAAAGAGAGTTTTTT+AGG	+	chr3_4:77905669-77905688	None:intergenic	25.0%
!!	CTAAAAAACTCTCTTTTAAC+TGG	-	chr3_4:77905667-77905686	Msa0524450:three_prime_UTR	25.0%
!	GTTAGTTAGTTAGTTAAAAG+AGG	+	chr3_4:77905821-77905840	None:intergenic	25.0%
!!!	TAAAGAATGTTTGTTGATTC+AGG	-	chr3_4:77905841-77905860	Msa0524450:three_prime_UTR	25.0%
!	TAGGGATTGAAAATTAAGTA+TGG	+	chr3_4:77906050-77906069	None:intergenic	25.0%
!!!	AGTAATAATGGTTTTGGTTA+GGG	+	chr3_4:77906068-77906087	None:intergenic	25.0%
!!!	TAGTAATAATGGTTTTGGTT+AGG	+	chr3_4:77906069-77906088	None:intergenic	25.0%
!!	ACAAGTAGTAATAATGGTTT+TGG	+	chr3_4:77906074-77906093	None:intergenic	25.0%
!	TTGTCTACAAGTAGTAATAA+TGG	+	chr3_4:77906080-77906099	None:intergenic	25.0%
!!!	TTTCAAGAGTTTTAAGAACT+CGG	+	chr3_4:77906337-77906356	None:intergenic	25.0%
!	AGTTCTTAAAACTCTTGAAA+TGG	-	chr3_4:77906337-77906356	Msa0524450:intron	25.0%
!	GAGTAATATAAGACATACAA+AGG	+	chr3_4:77906435-77906454	None:intergenic	25.0%
!	TTGTATGTCTTATATTACTC+AGG	-	chr3_4:77906435-77906454	Msa0524450:intron	25.0%
!!	ATTTATTAATCGGGTTTGTT+TGG	-	chr3_4:77906630-77906649	Msa0524450:intron	25.0%
!	ATTTGAACATACCTTCATAT+AGG	+	chr3_4:77906786-77906805	None:intergenic	25.0%
!!!	AAATGGGTTTGATATTTTTC+AGG	+	chr3_4:77906929-77906948	None:intergenic	25.0%
!	CTTGATATATTCACTGAAAT+GGG	+	chr3_4:77906945-77906964	None:intergenic	25.0%
!!	GACTATTTACTATTGATGAT+TGG	-	chr3_4:77907099-77907118	Msa0524450:CDS	25.0%
!	GAAATACTACTAATTCAAAC+AGG	+	chr3_4:77907138-77907157	None:intergenic	25.0%
!!	CGTTAAATTTTTGTTGCATA+TGG	-	chr3_4:77907406-77907425	Msa0524450:CDS	25.0%
!!!	ATTATATCAGTTTTGGACTA+TGG	-	chr3_4:77907439-77907458	Msa0524450:CDS	25.0%
!	AGAAATTATATTCTGGATTC+TGG	+	chr3_4:77907506-77907525	None:intergenic	25.0%
!	AACAGCAAGAAATTATATTC+TGG	+	chr3_4:77907513-77907532	None:intergenic	25.0%
!	TGTTATCATTATACTGTTTG+GGG	-	chr3_4:77907544-77907563	Msa0524450:CDS	25.0%
!	AAAAGATCCAAAATTGATCT+AGG	+	chr3_4:77907648-77907667	None:intergenic	25.0%
!!!	AGTTTTTTAGGGTTTCTCTT+GGG	+	chr3_4:77905657-77905676	None:intergenic	30.0%
	GTTAGTTAGTTAAAAGAGGA+TGG	+	chr3_4:77905817-77905836	None:intergenic	30.0%
	AAATTCAAGAGAAGAAGAGA+GGG	-	chr3_4:77905914-77905933	Msa0524450:three_prime_UTR	30.0%
	TGAAAATTAAGTATGGAGTG+TGG	+	chr3_4:77906043-77906062	None:intergenic	30.0%
!	CTACACTTTTCATTTCTATG+TGG	-	chr3_4:77906401-77906420	Msa0524450:intron	30.0%
	TATCAATGTCACAAGAATAG+AGG	+	chr3_4:77906611-77906630	None:intergenic	30.0%
	GCTTGATATATTCACTGAAA+TGG	+	chr3_4:77906946-77906965	None:intergenic	30.0%
	AATCGAGGAACTATACAAAA+AGG	-	chr3_4:77906985-77907004	Msa0524450:intron	30.0%
	AGGAAATTCAAGCTAAACAA+TGG	+	chr3_4:77907382-77907401	None:intergenic	30.0%
	GTTATCATTATACTGTTTGG+GGG	-	chr3_4:77907545-77907564	Msa0524450:CDS	30.0%
!!!	AGTTTTTTAGGGTTTCTCTT+GGG	+	chr3_4:77905657-77905676	None:intergenic	30.0%
	GTTAGTTAGTTAAAAGAGGA+TGG	+	chr3_4:77905817-77905836	None:intergenic	30.0%
	AAATTCAAGAGAAGAAGAGA+GGG	-	chr3_4:77905914-77905933	Msa0524450:three_prime_UTR	30.0%
	TGAAAATTAAGTATGGAGTG+TGG	+	chr3_4:77906043-77906062	None:intergenic	30.0%
!	CTACACTTTTCATTTCTATG+TGG	-	chr3_4:77906401-77906420	Msa0524450:intron	30.0%
	TATCAATGTCACAAGAATAG+AGG	+	chr3_4:77906611-77906630	None:intergenic	30.0%
	GCTTGATATATTCACTGAAA+TGG	+	chr3_4:77906946-77906965	None:intergenic	30.0%
	AATCGAGGAACTATACAAAA+AGG	-	chr3_4:77906985-77907004	Msa0524450:intron	30.0%
	AGGAAATTCAAGCTAAACAA+TGG	+	chr3_4:77907382-77907401	None:intergenic	30.0%
	GTTATCATTATACTGTTTGG+GGG	-	chr3_4:77907545-77907564	Msa0524450:CDS	30.0%
!!!	GAGTTTTTTAGGGTTTCTCT+TGG	+	chr3_4:77905658-77905677	None:intergenic	35.0%
	GAAATTCAAGAGAAGAAGAG+AGG	-	chr3_4:77905913-77905932	Msa0524450:three_prime_UTR	35.0%
	TTGAGTAATCAAACGAACTC+TGG	+	chr3_4:77905957-77905976	None:intergenic	35.0%
	ACTCAAGACGCTAACAAATA+CGG	-	chr3_4:77905971-77905990	Msa0524450:three_prime_UTR	35.0%
	TTACCAATCGAACAACGTAA+CGG	+	chr3_4:77906009-77906028	None:intergenic	35.0%
	AAGAACAATATCACCAGCAA+TGG	+	chr3_4:77906136-77906155	None:intergenic	35.0%
	GAAATGGATGATCAGTATGA+AGG	-	chr3_4:77906353-77906372	Msa0524450:intron	35.0%
	TCTTATATTACTCAGGCAAC+CGG	-	chr3_4:77906442-77906461	Msa0524450:intron	35.0%
	TCTTAACAAGACCAACATCA+AGG	+	chr3_4:77906519-77906538	None:intergenic	35.0%
!!	TTCACCGGAAGTACATTTTT+GGG	-	chr3_4:77906747-77906766	Msa0524450:CDS	35.0%
	AAAAAAGTCTCAAACTCCAC+AGG	+	chr3_4:77906858-77906877	None:intergenic	35.0%
	TTCAGTGAATATATCAAGCG+TGG	-	chr3_4:77906947-77906966	Msa0524450:CDS	35.0%
!!	TTCTCAGGCTTTTTGATTGA+GGG	+	chr3_4:77907034-77907053	None:intergenic	35.0%
!!	AACACAAGAGGTATCACATT+AGG	-	chr3_4:77907068-77907087	Msa0524450:CDS	35.0%
!	TACTATTGATGATTGGCAAG+TGG	-	chr3_4:77907106-77907125	Msa0524450:intron	35.0%
!!	TTTTGGACTATGGATTATCC+TGG	-	chr3_4:77907449-77907468	Msa0524450:CDS	35.0%
	AAATCGAAACAAGTCTATCC+AGG	+	chr3_4:77907470-77907489	None:intergenic	35.0%
	ATTTGTATTTCCAACCTAGC+TGG	-	chr3_4:77907678-77907697	Msa0524450:five_prime_UTR	35.0%
!!!	GAGTTTTTTAGGGTTTCTCT+TGG	+	chr3_4:77905658-77905677	None:intergenic	35.0%
	GAAATTCAAGAGAAGAAGAG+AGG	-	chr3_4:77905913-77905932	Msa0524450:three_prime_UTR	35.0%
	TTGAGTAATCAAACGAACTC+TGG	+	chr3_4:77905957-77905976	None:intergenic	35.0%
	ACTCAAGACGCTAACAAATA+CGG	-	chr3_4:77905971-77905990	Msa0524450:three_prime_UTR	35.0%
	TTACCAATCGAACAACGTAA+CGG	+	chr3_4:77906009-77906028	None:intergenic	35.0%
	AAGAACAATATCACCAGCAA+TGG	+	chr3_4:77906136-77906155	None:intergenic	35.0%
	GAAATGGATGATCAGTATGA+AGG	-	chr3_4:77906353-77906372	Msa0524450:intron	35.0%
	TCTTATATTACTCAGGCAAC+CGG	-	chr3_4:77906442-77906461	Msa0524450:intron	35.0%
	TCTTAACAAGACCAACATCA+AGG	+	chr3_4:77906519-77906538	None:intergenic	35.0%
!!	TTCACCGGAAGTACATTTTT+GGG	-	chr3_4:77906747-77906766	Msa0524450:CDS	35.0%
	AAAAAAGTCTCAAACTCCAC+AGG	+	chr3_4:77906858-77906877	None:intergenic	35.0%
	TTCAGTGAATATATCAAGCG+TGG	-	chr3_4:77906947-77906966	Msa0524450:CDS	35.0%
!!	TTCTCAGGCTTTTTGATTGA+GGG	+	chr3_4:77907034-77907053	None:intergenic	35.0%
!!	AACACAAGAGGTATCACATT+AGG	-	chr3_4:77907068-77907087	Msa0524450:CDS	35.0%
!	TACTATTGATGATTGGCAAG+TGG	-	chr3_4:77907106-77907125	Msa0524450:intron	35.0%
!!	TTTTGGACTATGGATTATCC+TGG	-	chr3_4:77907449-77907468	Msa0524450:CDS	35.0%
	AAATCGAAACAAGTCTATCC+AGG	+	chr3_4:77907470-77907489	None:intergenic	35.0%
	ATTTGTATTTCCAACCTAGC+TGG	-	chr3_4:77907678-77907697	Msa0524450:five_prime_UTR	35.0%
!	GTTGATTCAGGCATTTGTGA+AGG	-	chr3_4:77905853-77905872	Msa0524450:three_prime_UTR	40.0%
	TAATCAAACGAACTCTGGCT+CGG	+	chr3_4:77905952-77905971	None:intergenic	40.0%
	CGAACAACGTAACGGTATTT+GGG	+	chr3_4:77906001-77906020	None:intergenic	40.0%
	TCGAACAACGTAACGGTATT+TGG	+	chr3_4:77906002-77906021	None:intergenic	40.0%
	ATACCGTTACGTTGTTCGAT+TGG	-	chr3_4:77906003-77906022	Msa0524450:three_prime_UTR	40.0%
	CATAGTTAGTAAGGCCTACA+TGG	+	chr3_4:77906197-77906216	None:intergenic	40.0%
	TACCTGCAGCATAGTTAGTA+AGG	+	chr3_4:77906206-77906225	None:intergenic	40.0%
	ATGTTACCAGCTTATTGCAC+TGG	-	chr3_4:77906296-77906315	Msa0524450:intron	40.0%
!!	TTATTGCACTGGTCTCCTTT+TGG	-	chr3_4:77906307-77906326	Msa0524450:intron	40.0%
	TCAGTATGAAGGCAATGTTG+AGG	-	chr3_4:77906364-77906383	Msa0524450:intron	40.0%
	TTCCACAGAATAATCCTCTC+CGG	+	chr3_4:77906464-77906483	None:intergenic	40.0%
	CAAGAATAGAGGACATAGGT+GGG	+	chr3_4:77906600-77906619	None:intergenic	40.0%
	ACAAGAATAGAGGACATAGG+TGG	+	chr3_4:77906601-77906620	None:intergenic	40.0%
	GTCACAAGAATAGAGGACAT+AGG	+	chr3_4:77906604-77906623	None:intergenic	40.0%
	ATATTCCTCACAGCGACAAA+AGG	-	chr3_4:77906681-77906700	Msa0524450:CDS	40.0%
!!!	AAGGTTTGCTGGTTTTGACA+AGG	-	chr3_4:77906700-77906719	Msa0524450:CDS	40.0%
	GAAAAAAGAGCTTGATGCTG+AGG	-	chr3_4:77906724-77906743	Msa0524450:CDS	40.0%
!!	GTTCACCGGAAGTACATTTT+TGG	-	chr3_4:77906746-77906765	Msa0524450:CDS	40.0%
!!	TCACCGGAAGTACATTTTTG+GGG	-	chr3_4:77906748-77906767	Msa0524450:CDS	40.0%
	ACATGTTGCTGCCTATATGA+AGG	-	chr3_4:77906772-77906791	Msa0524450:intron	40.0%
!	TTTGTAAGGCATTCATCCTG+TGG	-	chr3_4:77906839-77906858	Msa0524450:intron	40.0%
	TATCAAGCGTGGAATTGAAG+CGG	-	chr3_4:77906958-77906977	Msa0524450:intron	40.0%
!!	CTTCTCAGGCTTTTTGATTG+AGG	+	chr3_4:77907035-77907054	None:intergenic	40.0%
	TGATACCTCTTGTGTTCCTT+TGG	+	chr3_4:77907064-77907083	None:intergenic	40.0%
	CTTTGTCTTTCTTTCCTCGT+AGG	+	chr3_4:77907273-77907292	None:intergenic	40.0%
	CGAGGAAAGAAAGACAAAGT+TGG	-	chr3_4:77907274-77907293	Msa0524450:CDS	40.0%
	AGGATGACGATGAGTGAAAT+TGG	-	chr3_4:77907342-77907361	Msa0524450:intron	40.0%
	GGATGACGATGAGTGAAATT+GGG	-	chr3_4:77907343-77907362	Msa0524450:intron	40.0%
	ACGATGAGTGAAATTGGGTT+GGG	-	chr3_4:77907348-77907367	Msa0524450:intron	40.0%
	AACTGTCGGAATTTGTGAGT+TGG	-	chr3_4:77907622-77907641	Msa0524450:intron	40.0%
!!	GAGTTGGCCTAGATCAATTT+TGG	-	chr3_4:77907638-77907657	Msa0524450:intron	40.0%
!	TTGTGGTGGAATGAGATTGT+AGG	+	chr3_4:77907704-77907723	None:intergenic	40.0%
	TACAATCTCATTCCACCACA+AGG	-	chr3_4:77907703-77907722	Msa0524450:five_prime_UTR	40.0%
!	GTTGATTCAGGCATTTGTGA+AGG	-	chr3_4:77905853-77905872	Msa0524450:three_prime_UTR	40.0%
	TAATCAAACGAACTCTGGCT+CGG	+	chr3_4:77905952-77905971	None:intergenic	40.0%
	CGAACAACGTAACGGTATTT+GGG	+	chr3_4:77906001-77906020	None:intergenic	40.0%
	TCGAACAACGTAACGGTATT+TGG	+	chr3_4:77906002-77906021	None:intergenic	40.0%
	ATACCGTTACGTTGTTCGAT+TGG	-	chr3_4:77906003-77906022	Msa0524450:three_prime_UTR	40.0%
	CATAGTTAGTAAGGCCTACA+TGG	+	chr3_4:77906197-77906216	None:intergenic	40.0%
	TACCTGCAGCATAGTTAGTA+AGG	+	chr3_4:77906206-77906225	None:intergenic	40.0%
	ATGTTACCAGCTTATTGCAC+TGG	-	chr3_4:77906296-77906315	Msa0524450:intron	40.0%
!!	TTATTGCACTGGTCTCCTTT+TGG	-	chr3_4:77906307-77906326	Msa0524450:intron	40.0%
	TCAGTATGAAGGCAATGTTG+AGG	-	chr3_4:77906364-77906383	Msa0524450:intron	40.0%
	TTCCACAGAATAATCCTCTC+CGG	+	chr3_4:77906464-77906483	None:intergenic	40.0%
	CAAGAATAGAGGACATAGGT+GGG	+	chr3_4:77906600-77906619	None:intergenic	40.0%
	ACAAGAATAGAGGACATAGG+TGG	+	chr3_4:77906601-77906620	None:intergenic	40.0%
	GTCACAAGAATAGAGGACAT+AGG	+	chr3_4:77906604-77906623	None:intergenic	40.0%
	ATATTCCTCACAGCGACAAA+AGG	-	chr3_4:77906681-77906700	Msa0524450:CDS	40.0%
!!!	AAGGTTTGCTGGTTTTGACA+AGG	-	chr3_4:77906700-77906719	Msa0524450:CDS	40.0%
	GAAAAAAGAGCTTGATGCTG+AGG	-	chr3_4:77906724-77906743	Msa0524450:CDS	40.0%
!!	GTTCACCGGAAGTACATTTT+TGG	-	chr3_4:77906746-77906765	Msa0524450:CDS	40.0%
!!	TCACCGGAAGTACATTTTTG+GGG	-	chr3_4:77906748-77906767	Msa0524450:CDS	40.0%
	ACATGTTGCTGCCTATATGA+AGG	-	chr3_4:77906772-77906791	Msa0524450:intron	40.0%
!	TTTGTAAGGCATTCATCCTG+TGG	-	chr3_4:77906839-77906858	Msa0524450:intron	40.0%
	TATCAAGCGTGGAATTGAAG+CGG	-	chr3_4:77906958-77906977	Msa0524450:intron	40.0%
!!	CTTCTCAGGCTTTTTGATTG+AGG	+	chr3_4:77907035-77907054	None:intergenic	40.0%
	TGATACCTCTTGTGTTCCTT+TGG	+	chr3_4:77907064-77907083	None:intergenic	40.0%
	CTTTGTCTTTCTTTCCTCGT+AGG	+	chr3_4:77907273-77907292	None:intergenic	40.0%
	CGAGGAAAGAAAGACAAAGT+TGG	-	chr3_4:77907274-77907293	Msa0524450:CDS	40.0%
	AGGATGACGATGAGTGAAAT+TGG	-	chr3_4:77907342-77907361	Msa0524450:intron	40.0%
	GGATGACGATGAGTGAAATT+GGG	-	chr3_4:77907343-77907362	Msa0524450:intron	40.0%
	ACGATGAGTGAAATTGGGTT+GGG	-	chr3_4:77907348-77907367	Msa0524450:intron	40.0%
	AACTGTCGGAATTTGTGAGT+TGG	-	chr3_4:77907622-77907641	Msa0524450:intron	40.0%
!!	GAGTTGGCCTAGATCAATTT+TGG	-	chr3_4:77907638-77907657	Msa0524450:intron	40.0%
!	TTGTGGTGGAATGAGATTGT+AGG	+	chr3_4:77907704-77907723	None:intergenic	40.0%
	TACAATCTCATTCCACCACA+AGG	-	chr3_4:77907703-77907722	Msa0524450:five_prime_UTR	40.0%
	AGTGTCCACATAAAGTGACG+AGG	-	chr3_4:77905614-77905633	Msa0524450:three_prime_UTR	45.0%
	GTACCATTCCGATTCCGAAT+GGG	+	chr3_4:77905772-77905791	None:intergenic	45.0%
	ATTGTCTCTGCTACCATTGC+TGG	-	chr3_4:77906120-77906139	Msa0524450:CDS	45.0%
	AGTTAGTAAGGCCTACATGG+AGG	+	chr3_4:77906194-77906213	None:intergenic	45.0%
	AACCGGAGAGGATTATTCTG+TGG	-	chr3_4:77906459-77906478	Msa0524450:intron	45.0%
!	AATCGGGTTTGTTTGGCTTC+AGG	-	chr3_4:77906637-77906656	Msa0524450:intron	45.0%
!	ATCGGGTTTGTTTGGCTTCA+GGG	-	chr3_4:77906638-77906657	Msa0524450:intron	45.0%
!!	CACCGGAAGTACATTTTTGG+GGG	-	chr3_4:77906749-77906768	Msa0524450:CDS	45.0%
	GTCCCCCAAAAATGTACTTC+CGG	+	chr3_4:77906754-77906773	None:intergenic	45.0%
	AATTGAAGCGGATGGAATCG+AGG	-	chr3_4:77906970-77906989	Msa0524450:intron	45.0%
	TACCTCTTGTGTTCCTTTGG+TGG	+	chr3_4:77907061-77907080	None:intergenic	45.0%
!!	TTCTTCAGGTTGTACCTGCT+CGG	+	chr3_4:77907245-77907264	None:intergenic	45.0%
	GTCATCCTCATCATCATCTC+CGG	+	chr3_4:77907330-77907349	None:intergenic	45.0%
	GACGATGAGTGAAATTGGGT+TGG	-	chr3_4:77907347-77907366	Msa0524450:intron	45.0%
	AATGAGATTGTAGGCCAGCT+AGG	+	chr3_4:77907695-77907714	None:intergenic	45.0%
	TCAGAAATCACCTTGCCTTG+TGG	+	chr3_4:77907721-77907740	None:intergenic	45.0%
	AGTGTCCACATAAAGTGACG+AGG	-	chr3_4:77905614-77905633	Msa0524450:three_prime_UTR	45.0%
	GTACCATTCCGATTCCGAAT+GGG	+	chr3_4:77905772-77905791	None:intergenic	45.0%
	ATTGTCTCTGCTACCATTGC+TGG	-	chr3_4:77906120-77906139	Msa0524450:CDS	45.0%
	AGTTAGTAAGGCCTACATGG+AGG	+	chr3_4:77906194-77906213	None:intergenic	45.0%
	AACCGGAGAGGATTATTCTG+TGG	-	chr3_4:77906459-77906478	Msa0524450:intron	45.0%
!	AATCGGGTTTGTTTGGCTTC+AGG	-	chr3_4:77906637-77906656	Msa0524450:intron	45.0%
!	ATCGGGTTTGTTTGGCTTCA+GGG	-	chr3_4:77906638-77906657	Msa0524450:intron	45.0%
!!	CACCGGAAGTACATTTTTGG+GGG	-	chr3_4:77906749-77906768	Msa0524450:CDS	45.0%
	GTCCCCCAAAAATGTACTTC+CGG	+	chr3_4:77906754-77906773	None:intergenic	45.0%
	AATTGAAGCGGATGGAATCG+AGG	-	chr3_4:77906970-77906989	Msa0524450:intron	45.0%
	TACCTCTTGTGTTCCTTTGG+TGG	+	chr3_4:77907061-77907080	None:intergenic	45.0%
!!	TTCTTCAGGTTGTACCTGCT+CGG	+	chr3_4:77907245-77907264	None:intergenic	45.0%
	GTCATCCTCATCATCATCTC+CGG	+	chr3_4:77907330-77907349	None:intergenic	45.0%
	GACGATGAGTGAAATTGGGT+TGG	-	chr3_4:77907347-77907366	Msa0524450:intron	45.0%
	AATGAGATTGTAGGCCAGCT+AGG	+	chr3_4:77907695-77907714	None:intergenic	45.0%
	TCAGAAATCACCTTGCCTTG+TGG	+	chr3_4:77907721-77907740	None:intergenic	45.0%
!!!	CTGCTGCTTTTCTCCAATGC+AGG	+	chr3_4:77905594-77905613	None:intergenic	50.0%
	CGTACCATTCCGATTCCGAA+TGG	+	chr3_4:77905773-77905792	None:intergenic	50.0%
	GCACATGAGCTTCCTCACTT+TGG	-	chr3_4:77906168-77906187	Msa0524450:intron	50.0%
	GGCCTTACTAACTATGCTGC+AGG	-	chr3_4:77906201-77906220	Msa0524450:intron	50.0%
	AGGAGACCAGTGCAATAAGC+TGG	+	chr3_4:77906305-77906324	None:intergenic	50.0%
	TAAGAACTCGGCGAGCCAAA+AGG	+	chr3_4:77906325-77906344	None:intergenic	50.0%
	TATTACTCAGGCAACCGGAG+AGG	-	chr3_4:77906447-77906466	Msa0524450:intron	50.0%
!	ACATCAAGGAGAGCACGGAA+TGG	+	chr3_4:77906505-77906524	None:intergenic	50.0%
	TTCCGTGCTCTCCTTGATGT+TGG	-	chr3_4:77906505-77906524	Msa0524450:intron	50.0%
	GACCAACATCAAGGAGAGCA+CGG	+	chr3_4:77906510-77906529	None:intergenic	50.0%
!!	GGTCTTGTTAAGACCACCAC+CGG	-	chr3_4:77906526-77906545	Msa0524450:intron	50.0%
	TTAAGACCACCACCGGAAAC+CGG	-	chr3_4:77906533-77906552	Msa0524450:intron	50.0%
!	TGTTTGGCTTCAGGGAGCTT+TGG	-	chr3_4:77906646-77906665	Msa0524450:intron	50.0%
!	GCAAACCTTTTGTCGCTGTG+AGG	+	chr3_4:77906689-77906708	None:intergenic	50.0%
	CACAGCGACAAAAGGTTTGC+TGG	-	chr3_4:77906689-77906708	Msa0524450:CDS	50.0%
	AGCTTGATGCTGAGGTTCAC+CGG	-	chr3_4:77906732-77906751	Msa0524450:CDS	50.0%
	AAGCGTGGAATTGAAGCGGA+TGG	-	chr3_4:77906962-77906981	Msa0524450:intron	50.0%
	GATTGAGGGATCTGCACGAA+TGG	+	chr3_4:77907020-77907039	None:intergenic	50.0%
	AGCCACCAAAGGAACACAAG+AGG	-	chr3_4:77907056-77907075	Msa0524450:CDS	50.0%
	CAAGCTCTCAATTCTGCAGC+CGG	-	chr3_4:77907308-77907327	Msa0524450:CDS	50.0%
	AGATTGTAGGCCAGCTAGGT+TGG	+	chr3_4:77907691-77907710	None:intergenic	50.0%
	TCTCATTCCACCACAAGGCA+AGG	-	chr3_4:77907708-77907727	Msa0524450:five_prime_UTR	50.0%
	GAAATCACCTTGCCTTGTGG+TGG	+	chr3_4:77907718-77907737	None:intergenic	50.0%
!!!	CTGCTGCTTTTCTCCAATGC+AGG	+	chr3_4:77905594-77905613	None:intergenic	50.0%
	CGTACCATTCCGATTCCGAA+TGG	+	chr3_4:77905773-77905792	None:intergenic	50.0%
	GCACATGAGCTTCCTCACTT+TGG	-	chr3_4:77906168-77906187	Msa0524450:intron	50.0%
	GGCCTTACTAACTATGCTGC+AGG	-	chr3_4:77906201-77906220	Msa0524450:intron	50.0%
	AGGAGACCAGTGCAATAAGC+TGG	+	chr3_4:77906305-77906324	None:intergenic	50.0%
	TAAGAACTCGGCGAGCCAAA+AGG	+	chr3_4:77906325-77906344	None:intergenic	50.0%
	TATTACTCAGGCAACCGGAG+AGG	-	chr3_4:77906447-77906466	Msa0524450:intron	50.0%
!	ACATCAAGGAGAGCACGGAA+TGG	+	chr3_4:77906505-77906524	None:intergenic	50.0%
	TTCCGTGCTCTCCTTGATGT+TGG	-	chr3_4:77906505-77906524	Msa0524450:intron	50.0%
	GACCAACATCAAGGAGAGCA+CGG	+	chr3_4:77906510-77906529	None:intergenic	50.0%
!!	GGTCTTGTTAAGACCACCAC+CGG	-	chr3_4:77906526-77906545	Msa0524450:intron	50.0%
	TTAAGACCACCACCGGAAAC+CGG	-	chr3_4:77906533-77906552	Msa0524450:intron	50.0%
!	TGTTTGGCTTCAGGGAGCTT+TGG	-	chr3_4:77906646-77906665	Msa0524450:intron	50.0%
!	GCAAACCTTTTGTCGCTGTG+AGG	+	chr3_4:77906689-77906708	None:intergenic	50.0%
	CACAGCGACAAAAGGTTTGC+TGG	-	chr3_4:77906689-77906708	Msa0524450:CDS	50.0%
	AGCTTGATGCTGAGGTTCAC+CGG	-	chr3_4:77906732-77906751	Msa0524450:CDS	50.0%
	AAGCGTGGAATTGAAGCGGA+TGG	-	chr3_4:77906962-77906981	Msa0524450:intron	50.0%
	GATTGAGGGATCTGCACGAA+TGG	+	chr3_4:77907020-77907039	None:intergenic	50.0%
	AGCCACCAAAGGAACACAAG+AGG	-	chr3_4:77907056-77907075	Msa0524450:CDS	50.0%
	CAAGCTCTCAATTCTGCAGC+CGG	-	chr3_4:77907308-77907327	Msa0524450:CDS	50.0%
	AGATTGTAGGCCAGCTAGGT+TGG	+	chr3_4:77907691-77907710	None:intergenic	50.0%
	TCTCATTCCACCACAAGGCA+AGG	-	chr3_4:77907708-77907727	Msa0524450:five_prime_UTR	50.0%
	GAAATCACCTTGCCTTGTGG+TGG	+	chr3_4:77907718-77907737	None:intergenic	50.0%
!	ACGGGCCTCGTCACTTTATG+TGG	+	chr3_4:77905622-77905641	None:intergenic	55.0%
	CATAAAGTGACGAGGCCCGT+AGG	-	chr3_4:77905622-77905641	Msa0524450:three_prime_UTR	55.0%
	TCTTGGGCTGCCTTTGCCTA+CGG	+	chr3_4:77905641-77905660	None:intergenic	55.0%
	CCAATCACCCACCACCCATT+CGG	-	chr3_4:77905755-77905774	Msa0524450:three_prime_UTR	55.0%
	ACCCACCACCCATTCGGAAT+CGG	-	chr3_4:77905761-77905780	Msa0524450:three_prime_UTR	55.0%
	TCCGATTCCGAATGGGTGGT+GGG	+	chr3_4:77905765-77905784	None:intergenic	55.0%
	TTCCGATTCCGAATGGGTGG+TGG	+	chr3_4:77905766-77905785	None:intergenic	55.0%
	CCATTCCGATTCCGAATGGG+TGG	+	chr3_4:77905769-77905788	None:intergenic	55.0%
	CCACCCATTCGGAATCGGAA+TGG	-	chr3_4:77905766-77905785	Msa0524450:three_prime_UTR	55.0%
	CCTACATGGAGGCCAAAGTG+AGG	+	chr3_4:77906183-77906202	None:intergenic	55.0%
	CCTCACTTTGGCCTCCATGT+AGG	-	chr3_4:77906180-77906199	Msa0524450:intron	55.0%
	TAAGACCACCACCGGAAACC+GGG	-	chr3_4:77906534-77906553	Msa0524450:intron	55.0%
	TGCACCAAAGACCCGGTTTC+CGG	+	chr3_4:77906548-77906567	None:intergenic	55.0%
	CCTTGAGTGCACCAAAGACC+CGG	+	chr3_4:77906555-77906574	None:intergenic	55.0%
!!	TGGCTTCAGGGAGCTTTGGA+CGG	-	chr3_4:77906650-77906669	Msa0524450:intron	55.0%
!	TCCTTTGGTGGCTGCTTCTC+AGG	+	chr3_4:77907049-77907068	None:intergenic	55.0%
	GCGTTGTTTGTCTTCCGAGC+AGG	-	chr3_4:77907228-77907247	Msa0524450:CDS	55.0%
	CCTCGTAGGTGAGCTTCTTC+AGG	+	chr3_4:77907259-77907278	None:intergenic	55.0%
	CCTGAAGAAGCTCACCTACG+AGG	-	chr3_4:77907256-77907275	Msa0524450:CDS	55.0%
!	TGCAGCCGGAGATGATGATG+AGG	-	chr3_4:77907322-77907341	Msa0524450:intron	55.0%
!	ACGGGCCTCGTCACTTTATG+TGG	+	chr3_4:77905622-77905641	None:intergenic	55.0%
	CATAAAGTGACGAGGCCCGT+AGG	-	chr3_4:77905622-77905641	Msa0524450:three_prime_UTR	55.0%
	TCTTGGGCTGCCTTTGCCTA+CGG	+	chr3_4:77905641-77905660	None:intergenic	55.0%
	CCAATCACCCACCACCCATT+CGG	-	chr3_4:77905755-77905774	Msa0524450:three_prime_UTR	55.0%
	ACCCACCACCCATTCGGAAT+CGG	-	chr3_4:77905761-77905780	Msa0524450:three_prime_UTR	55.0%
	TCCGATTCCGAATGGGTGGT+GGG	+	chr3_4:77905765-77905784	None:intergenic	55.0%
	TTCCGATTCCGAATGGGTGG+TGG	+	chr3_4:77905766-77905785	None:intergenic	55.0%
	CCATTCCGATTCCGAATGGG+TGG	+	chr3_4:77905769-77905788	None:intergenic	55.0%
	CCACCCATTCGGAATCGGAA+TGG	-	chr3_4:77905766-77905785	Msa0524450:three_prime_UTR	55.0%
	CCTACATGGAGGCCAAAGTG+AGG	+	chr3_4:77906183-77906202	None:intergenic	55.0%
	CCTCACTTTGGCCTCCATGT+AGG	-	chr3_4:77906180-77906199	Msa0524450:intron	55.0%
	TAAGACCACCACCGGAAACC+GGG	-	chr3_4:77906534-77906553	Msa0524450:intron	55.0%
	TGCACCAAAGACCCGGTTTC+CGG	+	chr3_4:77906548-77906567	None:intergenic	55.0%
	CCTTGAGTGCACCAAAGACC+CGG	+	chr3_4:77906555-77906574	None:intergenic	55.0%
!!	TGGCTTCAGGGAGCTTTGGA+CGG	-	chr3_4:77906650-77906669	Msa0524450:intron	55.0%
!	TCCTTTGGTGGCTGCTTCTC+AGG	+	chr3_4:77907049-77907068	None:intergenic	55.0%
	GCGTTGTTTGTCTTCCGAGC+AGG	-	chr3_4:77907228-77907247	Msa0524450:CDS	55.0%
	CCTCGTAGGTGAGCTTCTTC+AGG	+	chr3_4:77907259-77907278	None:intergenic	55.0%
	CCTGAAGAAGCTCACCTACG+AGG	-	chr3_4:77907256-77907275	Msa0524450:CDS	55.0%
!	TGCAGCCGGAGATGATGATG+AGG	-	chr3_4:77907322-77907341	Msa0524450:intron	55.0%
	CTTGGGCTGCCTTTGCCTAC+GGG	+	chr3_4:77905640-77905659	None:intergenic	60.0%
	TTCTCTGCACCAGACAGCCG+CGG	-	chr3_4:77905715-77905734	Msa0524450:three_prime_UTR	60.0%
!!	CCGAATGGGTGGTGGGTGAT+TGG	+	chr3_4:77905758-77905777	None:intergenic	60.0%
!	CTGTGGAACCAGCTGACTCC+AGG	-	chr3_4:77906476-77906495	Msa0524450:intron	60.0%
!	TGGAACCAGCTGACTCCAGG+AGG	-	chr3_4:77906479-77906498	Msa0524450:intron	60.0%
	AATGGCCTCCTGGAGTCAGC+TGG	+	chr3_4:77906487-77906506	None:intergenic	60.0%
	AAAGACCCGGTTTCCGGTGG+TGG	+	chr3_4:77906542-77906561	None:intergenic	60.0%
	ACCACCGGAAACCGGGTCTT+TGG	-	chr3_4:77906541-77906560	Msa0524450:intron	60.0%
	ACCAAAGACCCGGTTTCCGG+TGG	+	chr3_4:77906545-77906564	None:intergenic	60.0%
!	CCGGGTCTTTGGTGCACTCA+AGG	-	chr3_4:77906552-77906571	Msa0524450:intron	60.0%
!!	GGCTTCAGGGAGCTTTGGAC+GGG	-	chr3_4:77906651-77906670	Msa0524450:intron	60.0%
!!	GCTTCAGGGAGCTTTGGACG+GGG	-	chr3_4:77906652-77906671	Msa0524450:intron	60.0%
!!	CTTCAGGGAGCTTTGGACGG+GGG	-	chr3_4:77906653-77906672	Msa0524450:intron	60.0%
	GCCTGAGAAGCAGCCACCAA+AGG	-	chr3_4:77907045-77907064	Msa0524450:CDS	60.0%
	CTTGGGCTGCCTTTGCCTAC+GGG	+	chr3_4:77905640-77905659	None:intergenic	60.0%
	TTCTCTGCACCAGACAGCCG+CGG	-	chr3_4:77905715-77905734	Msa0524450:three_prime_UTR	60.0%
!!	CCGAATGGGTGGTGGGTGAT+TGG	+	chr3_4:77905758-77905777	None:intergenic	60.0%
!	CTGTGGAACCAGCTGACTCC+AGG	-	chr3_4:77906476-77906495	Msa0524450:intron	60.0%
!	TGGAACCAGCTGACTCCAGG+AGG	-	chr3_4:77906479-77906498	Msa0524450:intron	60.0%
	AATGGCCTCCTGGAGTCAGC+TGG	+	chr3_4:77906487-77906506	None:intergenic	60.0%
	AAAGACCCGGTTTCCGGTGG+TGG	+	chr3_4:77906542-77906561	None:intergenic	60.0%
	ACCACCGGAAACCGGGTCTT+TGG	-	chr3_4:77906541-77906560	Msa0524450:intron	60.0%
	ACCAAAGACCCGGTTTCCGG+TGG	+	chr3_4:77906545-77906564	None:intergenic	60.0%
!	CCGGGTCTTTGGTGCACTCA+AGG	-	chr3_4:77906552-77906571	Msa0524450:intron	60.0%
!!	GGCTTCAGGGAGCTTTGGAC+GGG	-	chr3_4:77906651-77906670	Msa0524450:intron	60.0%
!!	GCTTCAGGGAGCTTTGGACG+GGG	-	chr3_4:77906652-77906671	Msa0524450:intron	60.0%
!!	CTTCAGGGAGCTTTGGACGG+GGG	-	chr3_4:77906653-77906672	Msa0524450:intron	60.0%
	GCCTGAGAAGCAGCCACCAA+AGG	-	chr3_4:77907045-77907064	Msa0524450:CDS	60.0%
	GTGACGAGGCCCGTAGGCAA+AGG	-	chr3_4:77905628-77905647	Msa0524450:three_prime_UTR	65.0%
!	GAGAGCACGGAATGGCCTCC+TGG	+	chr3_4:77906497-77906516	None:intergenic	65.0%
	GTGACGAGGCCCGTAGGCAA+AGG	-	chr3_4:77905628-77905647	Msa0524450:three_prime_UTR	65.0%
!	GAGAGCACGGAATGGCCTCC+TGG	+	chr3_4:77906497-77906516	None:intergenic	65.0%
	CACCAGACAGCCGCGGTCGA+AGG	-	chr3_4:77905722-77905741	Msa0524450:three_prime_UTR	70.0%
	CACCTTCGACCGCGGCTGTC+TGG	+	chr3_4:77905727-77905746	None:intergenic	70.0%
	GACAGCCGCGGTCGAAGGTG+CGG	-	chr3_4:77905727-77905746	Msa0524450:three_prime_UTR	70.0%
!	ACAGCCGCGGTCGAAGGTGC+GGG	-	chr3_4:77905728-77905747	Msa0524450:three_prime_UTR	70.0%
	ACTGCCCGCACCTTCGACCG+CGG	+	chr3_4:77905735-77905754	None:intergenic	70.0%
!!	GGGAGCTTTGGACGGGGGTC+TGG	-	chr3_4:77906658-77906677	Msa0524450:intron	70.0%
	CACCAGACAGCCGCGGTCGA+AGG	-	chr3_4:77905722-77905741	Msa0524450:three_prime_UTR	70.0%
	CACCTTCGACCGCGGCTGTC+TGG	+	chr3_4:77905727-77905746	None:intergenic	70.0%
	GACAGCCGCGGTCGAAGGTG+CGG	-	chr3_4:77905727-77905746	Msa0524450:three_prime_UTR	70.0%
!	ACAGCCGCGGTCGAAGGTGC+GGG	-	chr3_4:77905728-77905747	Msa0524450:three_prime_UTR	70.0%
	ACTGCCCGCACCTTCGACCG+CGG	+	chr3_4:77905735-77905754	None:intergenic	70.0%
!!	GGGAGCTTTGGACGGGGGTC+TGG	-	chr3_4:77906658-77906677	Msa0524450:intron	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	77905581	77907848	77905581	ID=Msa0524450;Name=Msa0524450
chr3_4	mRNA	77905581	77907848	77905581	ID=Msa0524450-mRNA-1;Parent=Msa0524450;Name=Msa0524450-mRNA-1;_AED=0.10;_eAED=0.10;_QI=204\|0.83\|0.85\|1\|1\|1\|7\|490\|231
chr3_4	exon	77905581	77906179	77905581	ID=Msa0524450-mRNA-1:exon:23003;Parent=Msa0524450-mRNA-1
chr3_4	exon	77906673	77906770	77906673	ID=Msa0524450-mRNA-1:exon:23002;Parent=Msa0524450-mRNA-1
chr3_4	exon	77906856	77906972	77906856	ID=Msa0524450-mRNA-1:exon:23001;Parent=Msa0524450-mRNA-1
chr3_4	exon	77907044	77907123	77907044	ID=Msa0524450-mRNA-1:exon:23000;Parent=Msa0524450-mRNA-1
chr3_4	exon	77907207	77907333	77907207	ID=Msa0524450-mRNA-1:exon:22999;Parent=Msa0524450-mRNA-1
chr3_4	exon	77907405	77907566	77907405	ID=Msa0524450-mRNA-1:exon:22998;Parent=Msa0524450-mRNA-1
chr3_4	exon	77907642	77907848	77907642	ID=Msa0524450-mRNA-1:exon:22997;Parent=Msa0524450-mRNA-1
chr3_4	five_prime_UTR	77907645	77907848	77907645	ID=Msa0524450-mRNA-1:five_prime_utr;Parent=Msa0524450-mRNA-1
chr3_4	CDS	77907642	77907644	77907642	ID=Msa0524450-mRNA-1:cds;Parent=Msa0524450-mRNA-1
chr3_4	CDS	77907405	77907566	77907405	ID=Msa0524450-mRNA-1:cds;Parent=Msa0524450-mRNA-1
chr3_4	CDS	77907207	77907333	77907207	ID=Msa0524450-mRNA-1:cds;Parent=Msa0524450-mRNA-1
chr3_4	CDS	77907044	77907123	77907044	ID=Msa0524450-mRNA-1:cds;Parent=Msa0524450-mRNA-1
chr3_4	CDS	77906856	77906972	77906856	ID=Msa0524450-mRNA-1:cds;Parent=Msa0524450-mRNA-1
chr3_4	CDS	77906673	77906770	77906673	ID=Msa0524450-mRNA-1:cds;Parent=Msa0524450-mRNA-1
chr3_4	CDS	77906071	77906179	77906071	ID=Msa0524450-mRNA-1:cds;Parent=Msa0524450-mRNA-1
chr3_4	three_prime_UTR	77905581	77906070	77905581	ID=Msa0524450-mRNA-1:three_prime_utr;Parent=Msa0524450-mRNA-1

Gene Sequence

>Msa0524450

ATGGCATTTGTGAAGGCTCAGAAATCAAATGCGTACTTCAAGCGATTTCAAGTGAAATTCAAGAGAAGAAGAGAGGGTAAGACTGATTACCGAGCCAGAGTTCGTTTGATTACTCAAGACGCTAACAAATACGGCACTCCCAAATACCGTTACGTTGTTCGATTGACAAACAAAGACATTGTCTGTCAAATTGTCTCTGCTACCATTGCTGGTGATATTGTTCTTGCTGCTGCTTACGCACATGAGCTTCCTCACTTTGGCCTCCATGTAGGCCTTACTAACTATGCTGCAGCTTATTGCACTGGTCTCCTTTTGGCTCGCCGAGTTCTTAAAACTCTTGAAATGGATGATCAGTATGAAGGCAATGTTGAGGCAACCGGAGAGGATTATTCTGTGGAACCAGCTGACTCCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTGTTAAGACCACCACCGGAAACCGGGTCTTTGGTGCACTCAAGGGAGCTTTGGACGGGGGTCTGGATATTCCTCACAGCGACAAAAGGTTTGCTGGTTTTGACAAGGAGAAAAAAGAGCTTGATGCTGAGGTTCACCGGAAGTACAACCTGAAGAAGCTCACCTACGAGGAAAGAAAGACAAAGTTGGTCTCTCGCTTGCAAGCTCTCAATTCTGCAGCCGGAGATGATGATGAGGATGACGATGAGTGA

Protein sequence

>Msa0524450

MAFVKAQKSNAYFKRFQVKFKRRREGKTDYRARVRLITQDANKYGTPKYRYVVRLTNKDIVCQIVSATIAGDIVLAAAYAHELPHFGLHVGLTNYAAAYCTGLLLARRVLKTLEMDDQYEGNVEATGEDYSVEPADSRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYNLKKLTYEERKTKLVSRLQALNSAAGDDDEDDDE*