Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017660 | sp|Q65XS5|BC10_ORYSJ | 36.808 | 307 | 146 | 9 | 107 | 368 | 85 | 388 | 5.26e-49 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0017660 | 0.831111 | 2.009202e-55 | -8.615850e-47 |
| Msa0017660 | Msa0052930 | 0.834739 | 2.517918e-56 | -8.615850e-47 |
| Msa0017660 | Msa0098290 | 0.908503 | 1.592344e-81 | -8.615850e-47 |
| Msa0017660 | Msa0138900 | 0.807737 | 4.367458e-50 | -8.615850e-47 |
| Msa0017660 | Msa0148530 | 0.855970 | 4.412562e-62 | -8.615850e-47 |
| Msa0017660 | Msa0518170 | 0.806552 | 7.781026e-50 | -8.615850e-47 |
| Msa0017660 | Msa0534870 | 0.812302 | 4.539481e-51 | -8.615850e-47 |
| Msa0017660 | Msa0631320 | 0.821256 | 4.448317e-53 | -8.615850e-47 |
| Msa0017660 | Msa1107200 | 0.800705 | 1.271381e-48 | -8.615850e-47 |
| Msa0017660 | Msa1183140 | 0.822562 | 2.216961e-53 | -8.615850e-47 |
| Msa0017660 | Msa1307160 | 0.809649 | 1.704305e-50 | -8.615850e-47 |
| Msa0017660 | Msa1307180 | 0.817772 | 2.773102e-52 | -8.615850e-47 |
| Msa0017660 | Msa1309760 | 0.808412 | 3.136547e-50 | -8.615850e-47 |
| Msa0017660 | Msa1316360 | 0.819451 | 1.153770e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017660 | MtrunA17_Chr1g0151841 | 96.552 | 377 | 12 | 1 | 1 | 376 | 1 | 377 | 0.0 | 759 |
| Msa0017660 | MtrunA17_Chr8g0341461 | 68.155 | 336 | 103 | 2 | 35 | 369 | 75 | 407 | 3.39e-177 | 499 |
| Msa0017660 | MtrunA17_Chr1g0209531 | 56.190 | 315 | 134 | 4 | 63 | 376 | 82 | 393 | 8.67e-133 | 386 |
| Msa0017660 | MtrunA17_Chr2g0276861 | 58.086 | 303 | 125 | 2 | 75 | 376 | 137 | 438 | 1.02e-131 | 384 |
| Msa0017660 | MtrunA17_Chr5g0423131 | 49.856 | 347 | 166 | 3 | 26 | 366 | 37 | 381 | 1.66e-126 | 369 |
| Msa0017660 | MtrunA17_Chr6g0484141 | 52.532 | 316 | 148 | 2 | 52 | 366 | 96 | 410 | 3.95e-124 | 364 |
| Msa0017660 | MtrunA17_Chr5g0394961 | 54.485 | 301 | 135 | 2 | 67 | 366 | 113 | 412 | 1.45e-121 | 358 |
| Msa0017660 | MtrunA17_Chr3g0136091 | 49.834 | 301 | 131 | 4 | 67 | 366 | 103 | 384 | 2.33e-105 | 315 |
| Msa0017660 | MtrunA17_Chr4g0073871 | 57.353 | 204 | 87 | 0 | 163 | 366 | 9 | 212 | 5.38e-89 | 267 |
| Msa0017660 | MtrunA17_Chr5g0394981 | 55.882 | 204 | 90 | 0 | 163 | 366 | 2 | 205 | 6.05e-85 | 257 |
| Msa0017660 | MtrunA17_Chr3g0138871 | 39.692 | 325 | 170 | 5 | 75 | 376 | 60 | 381 | 1.97e-79 | 248 |
| Msa0017660 | MtrunA17_Chr1g0148241 | 38.356 | 365 | 196 | 7 | 25 | 366 | 32 | 390 | 1.02e-76 | 242 |
| Msa0017660 | MtrunA17_Chr4g0071911 | 41.479 | 311 | 157 | 6 | 83 | 371 | 83 | 390 | 5.38e-75 | 238 |
| Msa0017660 | MtrunA17_Chr2g0298501 | 42.361 | 288 | 141 | 5 | 106 | 371 | 105 | 389 | 2.35e-72 | 231 |
| Msa0017660 | MtrunA17_Chr2g0298511 | 41.115 | 287 | 145 | 4 | 106 | 371 | 97 | 380 | 1.51e-71 | 228 |
| Msa0017660 | MtrunA17_Chr8g0384601 | 37.377 | 305 | 146 | 8 | 106 | 368 | 55 | 356 | 1.06e-55 | 186 |
| Msa0017660 | MtrunA17_Chr2g0289021 | 38.170 | 317 | 152 | 10 | 91 | 366 | 46 | 359 | 7.48e-55 | 184 |
| Msa0017660 | MtrunA17_Chr1g0170231 | 34.828 | 290 | 159 | 7 | 106 | 374 | 63 | 343 | 3.41e-47 | 164 |
| Msa0017660 | MtrunA17_Chr3g0137661 | 34.520 | 281 | 171 | 7 | 107 | 374 | 95 | 375 | 1.68e-40 | 147 |
| Msa0017660 | MtrunA17_Chr1g0170151 | 35.211 | 284 | 154 | 9 | 106 | 369 | 64 | 337 | 9.38e-38 | 139 |
| Msa0017660 | MtrunA17_Chr2g0322161 | 33.667 | 300 | 156 | 11 | 107 | 374 | 78 | 366 | 1.60e-36 | 136 |
| Msa0017660 | MtrunA17_Chr5g0394971 | 57.471 | 87 | 36 | 1 | 79 | 164 | 1 | 87 | 1.63e-30 | 112 |
| Msa0017660 | MtrunA17_Chr4g0073881 | 51.000 | 100 | 47 | 2 | 67 | 165 | 112 | 210 | 1.70e-28 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017660 | AT5G11730.1 | 67.183 | 387 | 115 | 3 | 1 | 376 | 1 | 386 | 0.0 | 535 |
| Msa0017660 | AT5G25970.1 | 64.987 | 377 | 121 | 1 | 3 | 368 | 4 | 380 | 3.20e-180 | 506 |
| Msa0017660 | AT5G25970.2 | 64.987 | 377 | 121 | 1 | 3 | 368 | 4 | 380 | 3.20e-180 | 506 |
| Msa0017660 | AT5G25970.3 | 64.987 | 377 | 121 | 1 | 3 | 368 | 4 | 380 | 3.20e-180 | 506 |
| Msa0017660 | AT3G21310.1 | 62.974 | 343 | 121 | 3 | 35 | 376 | 46 | 383 | 3.57e-161 | 457 |
| Msa0017660 | AT3G21310.3 | 62.974 | 343 | 121 | 3 | 35 | 376 | 46 | 383 | 3.57e-161 | 457 |
| Msa0017660 | AT1G51770.1 | 59.827 | 346 | 131 | 3 | 35 | 376 | 51 | 392 | 6.04e-157 | 447 |
| Msa0017660 | AT1G51770.2 | 55.043 | 347 | 121 | 4 | 34 | 376 | 50 | 365 | 3.95e-138 | 399 |
| Msa0017660 | AT1G10280.1 | 56.113 | 319 | 137 | 3 | 59 | 376 | 96 | 412 | 5.10e-132 | 384 |
| Msa0017660 | AT1G68390.1 | 54.487 | 312 | 139 | 2 | 67 | 376 | 98 | 408 | 1.83e-127 | 372 |
| Msa0017660 | AT5G16170.1 | 53.094 | 307 | 126 | 2 | 78 | 366 | 94 | 400 | 1.02e-117 | 348 |
| Msa0017660 | AT1G10880.1 | 53.103 | 290 | 131 | 2 | 81 | 368 | 93 | 379 | 4.86e-117 | 345 |
| Msa0017660 | AT1G68380.1 | 47.324 | 355 | 171 | 8 | 26 | 370 | 39 | 387 | 2.68e-108 | 323 |
| Msa0017660 | AT1G73810.1 | 50.492 | 305 | 145 | 3 | 70 | 371 | 113 | 414 | 7.56e-107 | 320 |
| Msa0017660 | AT3G21310.2 | 61.905 | 210 | 75 | 2 | 35 | 243 | 46 | 251 | 5.41e-90 | 272 |
| Msa0017660 | AT4G31350.4 | 43.878 | 294 | 139 | 5 | 96 | 366 | 76 | 366 | 6.28e-80 | 250 |
| Msa0017660 | AT4G31350.1 | 43.878 | 294 | 139 | 5 | 96 | 366 | 76 | 366 | 6.28e-80 | 250 |
| Msa0017660 | AT4G31350.2 | 43.878 | 294 | 139 | 5 | 96 | 366 | 76 | 366 | 6.28e-80 | 250 |
| Msa0017660 | AT4G30060.2 | 37.466 | 371 | 195 | 9 | 24 | 371 | 36 | 392 | 8.29e-76 | 240 |
| Msa0017660 | AT4G30060.1 | 37.466 | 371 | 195 | 9 | 24 | 371 | 36 | 392 | 8.29e-76 | 240 |
| Msa0017660 | AT4G31350.3 | 43.197 | 294 | 136 | 6 | 96 | 366 | 76 | 361 | 8.90e-76 | 239 |
| Msa0017660 | AT2G19160.2 | 37.634 | 372 | 187 | 13 | 24 | 368 | 33 | 386 | 1.72e-73 | 234 |
| Msa0017660 | AT2G19160.1 | 37.634 | 372 | 187 | 13 | 24 | 368 | 33 | 386 | 1.72e-73 | 234 |
| Msa0017660 | AT4G25870.1 | 38.854 | 314 | 165 | 6 | 79 | 368 | 70 | 380 | 2.75e-72 | 231 |
| Msa0017660 | AT5G57270.3 | 36.000 | 375 | 208 | 9 | 17 | 368 | 14 | 379 | 2.27e-70 | 226 |
| Msa0017660 | AT5G57270.1 | 36.000 | 375 | 208 | 9 | 17 | 368 | 14 | 379 | 2.27e-70 | 226 |
| Msa0017660 | AT5G57270.4 | 36.000 | 375 | 208 | 9 | 17 | 368 | 14 | 379 | 2.27e-70 | 226 |
| Msa0017660 | AT5G57270.5 | 36.000 | 375 | 208 | 9 | 17 | 368 | 14 | 379 | 2.27e-70 | 226 |
| Msa0017660 | AT5G57270.2 | 36.000 | 375 | 208 | 9 | 17 | 368 | 14 | 379 | 2.27e-70 | 226 |
| Msa0017660 | AT5G14550.2 | 41.270 | 252 | 126 | 6 | 103 | 335 | 61 | 309 | 3.35e-58 | 193 |
| Msa0017660 | AT5G14550.3 | 37.658 | 316 | 152 | 8 | 97 | 370 | 55 | 367 | 8.64e-58 | 192 |
| Msa0017660 | AT5G14550.1 | 37.342 | 316 | 152 | 9 | 97 | 369 | 55 | 367 | 1.55e-57 | 192 |
| Msa0017660 | AT5G25330.1 | 35.054 | 368 | 213 | 13 | 24 | 375 | 4 | 361 | 3.62e-50 | 172 |
| Msa0017660 | AT1G62305.1 | 36.190 | 315 | 155 | 10 | 92 | 366 | 56 | 364 | 1.15e-49 | 171 |
| Msa0017660 | AT1G11940.1 | 36.149 | 296 | 146 | 8 | 106 | 361 | 73 | 365 | 4.59e-49 | 170 |
| Msa0017660 | AT3G52060.1 | 34.409 | 279 | 163 | 8 | 106 | 373 | 74 | 343 | 4.65e-48 | 166 |
| Msa0017660 | AT5G14550.4 | 36.486 | 296 | 156 | 8 | 97 | 370 | 55 | 340 | 9.01e-47 | 163 |
| Msa0017660 | AT1G62305.3 | 41.304 | 230 | 107 | 7 | 92 | 299 | 56 | 279 | 4.08e-45 | 158 |
| Msa0017660 | AT1G11940.2 | 43.258 | 178 | 94 | 4 | 106 | 279 | 73 | 247 | 3.68e-40 | 143 |
| Msa0017660 | AT5G22070.1 | 33.445 | 299 | 159 | 9 | 107 | 374 | 71 | 360 | 2.61e-39 | 144 |
| Msa0017660 | AT4G32290.1 | 33.242 | 364 | 208 | 11 | 31 | 375 | 31 | 378 | 3.35e-37 | 138 |
| Msa0017660 | AT1G62305.2 | 32.381 | 315 | 143 | 11 | 92 | 366 | 56 | 340 | 2.52e-35 | 133 |
Find 96 sgRNAs with CRISPR-Local
Find 474 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGTACAAATGAGCTTAT+TGG | 0.154481 | 1_1:-29478461 | Msa0017660:three_prime_UTR |
| TGCACCGACGAAGCTGAATT+TGG | 0.205834 | 1_1:+29479123 | None:intergenic |
| GTTCTTTATCACTCATATTA+TGG | 0.210415 | 1_1:+29484419 | None:intergenic |
| CATTGCCTCTTGCACCTGTT+TGG | 0.243558 | 1_1:-29484306 | Msa0017660:CDS |
| ACTTCTTTGGAGAGCTTCTT+TGG | 0.250935 | 1_1:-29484398 | Msa0017660:CDS |
| AAAGGGTAATTCTTAATCTT+AGG | 0.260696 | 1_1:+29484373 | None:intergenic |
| GTATACACAATTAAGCATTT+TGG | 0.282389 | 1_1:-29484541 | Msa0017660:CDS |
| TGAGTGATAAAGAACTTCTT+TGG | 0.293369 | 1_1:-29484411 | Msa0017660:CDS |
| ATTGCCTCTTGCACCTGTTT+GGG | 0.296741 | 1_1:-29484305 | Msa0017660:CDS |
| TAGAGTTTCTATTGTTATAC+AGG | 0.336336 | 1_1:+29478747 | None:intergenic |
| CTTGGAACCTTTGTTAGATA+TGG | 0.338936 | 1_1:-29478684 | Msa0017660:CDS |
| TTGACTAGAGGGGCCATGTT+TGG | 0.342155 | 1_1:+29479061 | None:intergenic |
| AGGAACATAAAAGCAATCTT+AGG | 0.357395 | 1_1:+29484340 | None:intergenic |
| TGACTAGAGGGGCCATGTTT+GGG | 0.361044 | 1_1:+29479062 | None:intergenic |
| ATGCGGTGTCTTCCACAATA+TGG | 0.362225 | 1_1:+29478981 | None:intergenic |
| CTCTAGTCAACGTTACAAAA+TGG | 0.364473 | 1_1:-29479048 | Msa0017660:CDS |
| CGTTGAAGAACGTGCTGGTT+TGG | 0.378429 | 1_1:-29484473 | Msa0017660:CDS |
| TGGCATGGTGATTGCCTCAT+TGG | 0.392310 | 1_1:-29478545 | Msa0017660:three_prime_UTR |
| ATCTTAGGAACTCTTTCAAA+AGG | 0.395819 | 1_1:+29484355 | None:intergenic |
| CTACAGTATTGTTCGAACTT+AGG | 0.401155 | 1_1:+29478953 | None:intergenic |
| ATTAGCAAGTAGTCTTCTTT+CGG | 0.401766 | 1_1:+29479243 | None:intergenic |
| GTCGGTGCATTTGATGATCC+TGG | 0.408642 | 1_1:-29479109 | Msa0017660:CDS |
| CTCTTGCACCTGTTTGGGAG+AGG | 0.412242 | 1_1:-29484300 | Msa0017660:CDS |
| CAACACACTCCCCGCTTGAA+TGG | 0.413577 | 1_1:+29478886 | None:intergenic |
| TCTTGTTCAGATTGCTGAGT+GGG | 0.414497 | 1_1:-29479287 | Msa0017660:intron |
| GGGTGGATTGGTCTAGAGGT+GGG | 0.417834 | 1_1:-29478844 | Msa0017660:CDS |
| CAAGATGCAATCGAGGGCTT+TGG | 0.417995 | 1_1:-29484659 | Msa0017660:exon |
| GGGGCCCATCCAGCTACATT+TGG | 0.423319 | 1_1:-29478824 | Msa0017660:CDS |
| TTCAGAAACCTCTCCCAAAC+AGG | 0.428489 | 1_1:+29484292 | None:intergenic |
| CGGGGAGTGTGTTGGCAAAT+CGG | 0.432852 | 1_1:-29478877 | Msa0017660:CDS |
| TGGCAAATCGGAGCATAACT+TGG | 0.433668 | 1_1:-29478865 | Msa0017660:CDS |
| TCTGAAGAAGGAAAATCAAA+AGG | 0.438585 | 1_1:-29484634 | Msa0017660:CDS |
| CAAAATATACATACCTGACT+AGG | 0.457704 | 1_1:+29484175 | None:intergenic |
| AACAGATGAAGGAGGAAACT+TGG | 0.460141 | 1_1:+29484216 | None:intergenic |
| AAAATTTGCTCCTAGTGCCT+TGG | 0.467657 | 1_1:-29478702 | Msa0017660:CDS |
| CAATAGAATAAACCGCTCAT+TGG | 0.469034 | 1_1:+29479204 | None:intergenic |
| GGAAACTTGGCTTGATAAGA+AGG | 0.470311 | 1_1:+29484229 | None:intergenic |
| TAAGAGACAAATCCCTAGTC+AGG | 0.472658 | 1_1:-29484188 | Msa0017660:intron |
| GGAGCATAACTTGGGTGGAT+TGG | 0.479204 | 1_1:-29478856 | Msa0017660:CDS |
| GCTTGAATGGTTAACATGGT+TGG | 0.484426 | 1_1:+29478899 | None:intergenic |
| AACGTGCTGGTTTGGAACAA+TGG | 0.490018 | 1_1:-29484465 | Msa0017660:CDS |
| TTGGCTTGATAAGAAGGAGT+TGG | 0.500843 | 1_1:+29484235 | None:intergenic |
| CGTCCTCTTCCGTATGGACC+AGG | 0.503162 | 1_1:+29479091 | None:intergenic |
| TTTGGGAGAGGTTTCTGAAA+GGG | 0.509717 | 1_1:-29484288 | Msa0017660:CDS |
| GTAGAGAGGGATACATGATT+CGG | 0.512493 | 1_1:+29479180 | None:intergenic |
| GAGGCAATGGTCCTTTAGTA+AGG | 0.515491 | 1_1:+29484320 | None:intergenic |
| CTAGACTGAATTTGTAGAGA+GGG | 0.522832 | 1_1:+29479167 | None:intergenic |
| ATATTATGGATCAGATTTGA+AGG | 0.522939 | 1_1:+29484433 | None:intergenic |
| TGGGTGGATTGGTCTAGAGG+TGG | 0.535618 | 1_1:-29478845 | Msa0017660:CDS |
| TTGTAGCGTCCTCTTCCGTA+TGG | 0.537017 | 1_1:+29479085 | None:intergenic |
| TCTTAGGAACTCTTTCAAAA+GGG | 0.537953 | 1_1:+29484356 | None:intergenic |
| TTCAGATTGCTGAGTGGGGA+AGG | 0.538958 | 1_1:-29479282 | Msa0017660:intron |
| CTCTCCCAAACAGGTGCAAG+AGG | 0.544373 | 1_1:+29484301 | None:intergenic |
| CTCAAAAGTTATGAAAATTG+AGG | 0.546705 | 1_1:+29478492 | None:intergenic |
| AACGTTACAAAATGGCGTAA+AGG | 0.547258 | 1_1:-29479040 | Msa0017660:CDS |
| ACCATGTTAACCATTCAAGC+GGG | 0.549181 | 1_1:-29478896 | Msa0017660:CDS |
| CATATCTAACAAAGGTTCCA+AGG | 0.551048 | 1_1:+29478685 | None:intergenic |
| CTGAAGAAGGAAAATCAAAA+GGG | 0.552666 | 1_1:-29484633 | Msa0017660:CDS |
| CAAGCTTGCCGTCCATATTG+TGG | 0.554887 | 1_1:-29478993 | Msa0017660:CDS |
| CTTGTTCAGATTGCTGAGTG+GGG | 0.555008 | 1_1:-29479286 | Msa0017660:intron |
| AGGGCTTTGGCATCTGAAGA+AGG | 0.556245 | 1_1:-29484646 | Msa0017660:CDS |
| TGACACTCCACCTCGTAAGA+AGG | 0.556543 | 1_1:+29485457 | None:intergenic |
| TTTGATGATCCTGGTCCATA+CGG | 0.557830 | 1_1:-29479100 | Msa0017660:CDS |
| GATCCTGGTCCATACGGAAG+AGG | 0.560466 | 1_1:-29479094 | Msa0017660:CDS |
| AAATCCAAATTCAGCTTCGT+CGG | 0.569207 | 1_1:-29479127 | Msa0017660:CDS |
| ATGGTGATTGCCTCATTGGA+TGG | 0.570076 | 1_1:-29478541 | Msa0017660:three_prime_UTR |
| GGTGGATTGGTCTAGAGGTG+GGG | 0.570596 | 1_1:-29478843 | Msa0017660:CDS |
| AATGGCGTAAAGGCTCTCAA+TGG | 0.571190 | 1_1:-29479030 | Msa0017660:CDS |
| CAAACAGGTGCAAGAGGCAA+TGG | 0.572308 | 1_1:+29484307 | None:intergenic |
| CATTCAAGCGGGGAGTGTGT+TGG | 0.572448 | 1_1:-29478885 | Msa0017660:CDS |
| ACTTGGGTGGATTGGTCTAG+AGG | 0.573299 | 1_1:-29478848 | Msa0017660:CDS |
| CCCCGCTTGAATGGTTAACA+TGG | 0.575864 | 1_1:+29478895 | None:intergenic |
| CCAGCACGTTCTTCAACGCA+TGG | 0.586978 | 1_1:+29484478 | None:intergenic |
| AACCATGTTAACCATTCAAG+CGG | 0.590819 | 1_1:-29478897 | Msa0017660:CDS |
| CCATGCGTTGAAGAACGTGC+TGG | 0.593014 | 1_1:-29484478 | Msa0017660:CDS |
| AAAATATACATACCTGACTA+GGG | 0.593555 | 1_1:+29484176 | None:intergenic |
| GAATTCACCATATCTAACAA+AGG | 0.595366 | 1_1:+29478677 | None:intergenic |
| GTTTGGGAGAGGTTTCTGAA+AGG | 0.596050 | 1_1:-29484289 | Msa0017660:CDS |
| TTCTTGTTCAGATTGCTGAG+TGG | 0.597688 | 1_1:-29479288 | Msa0017660:intron |
| GTTCGAACAATACTGTAGAC+CGG | 0.597734 | 1_1:-29478948 | Msa0017660:CDS |
| GGCAAATCGGAGCATAACTT+GGG | 0.604748 | 1_1:-29478864 | Msa0017660:CDS |
| AACAAAGGTTCCAAGGCACT+AGG | 0.605399 | 1_1:+29478692 | None:intergenic |
| TTTAAGCAAGATGCAATCGA+GGG | 0.613015 | 1_1:-29484665 | Msa0017660:intron |
| TACTTGACATCTCCAATGAG+CGG | 0.613960 | 1_1:-29479216 | Msa0017660:CDS |
| AAAACACAACACATAGTGCA+AGG | 0.624692 | 1_1:+29484575 | None:intergenic |
| AGGACGCTACAACCCAAACA+TGG | 0.648045 | 1_1:-29479074 | Msa0017660:CDS |
| TGCTCGTCGACATAACAAGC+CGG | 0.649367 | 1_1:+29478929 | None:intergenic |
| TTCGAACTTAGGATAAAATG+CGG | 0.652612 | 1_1:+29478964 | None:intergenic |
| ACTAGACTGAATTTGTAGAG+AGG | 0.654314 | 1_1:+29479166 | None:intergenic |
| AAATCGGAGCATAACTTGGG+TGG | 0.655678 | 1_1:-29478861 | Msa0017660:CDS |
| GGATGGTGAATGCTAGATGA+TGG | 0.659665 | 1_1:-29478524 | Msa0017660:three_prime_UTR |
| TTATGGATCAGATTTGAAGG+AGG | 0.663245 | 1_1:+29484436 | None:intergenic |
| GGTGTCTTCCACAATATGGA+CGG | 0.663514 | 1_1:+29478985 | None:intergenic |
| CTAGCATTCACCATCCAATG+AGG | 0.673494 | 1_1:+29478531 | None:intergenic |
| AGTGTCAAAGAGTACCAGCA+AGG | 0.705726 | 1_1:-29485441 | Msa0017660:five_prime_UTR |
| CCATGTTAACCATTCAAGCG+GGG | 0.708045 | 1_1:-29478895 | Msa0017660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACTAGAAATTTTATTATA+TGG | - | chr1_1:29485337-29485356 | Msa0017660:intron | 10.0% |
| !! | GATCAAATATTTAATGTAAA+TGG | + | chr1_1:29479115-29479134 | None:intergenic | 15.0% |
| !!! | AGATAATTTTTGTTTATTTG+AGG | - | chr1_1:29479217-29479236 | Msa0017660:CDS | 15.0% |
| !! | AGAAGTTAATAATGTTTAAT+TGG | - | chr1_1:29479807-29479826 | Msa0017660:intron | 15.0% |
| !! | ATAAATAAATACATATCACT+TGG | - | chr1_1:29480983-29481002 | Msa0017660:intron | 15.0% |
| !!! | CTTTAATAATTTAAGGTTTT+AGG | + | chr1_1:29481024-29481043 | None:intergenic | 15.0% |
| !! | CTAAAACCTTAAATTATTAA+AGG | - | chr1_1:29481022-29481041 | Msa0017660:intron | 15.0% |
| !!! | AATTAGTTTTACAAGTTTAT+AGG | - | chr1_1:29481723-29481742 | Msa0017660:intron | 15.0% |
| !!! | ATTAGTTTTACAAGTTTATA+GGG | - | chr1_1:29481724-29481743 | Msa0017660:intron | 15.0% |
| !! | TCATAAAAACTTACTATTTA+AGG | - | chr1_1:29482564-29482583 | Msa0017660:intron | 15.0% |
| !!! | TTTTTTTTTTGAAGAAAAAC+TGG | + | chr1_1:29484078-29484097 | None:intergenic | 15.0% |
| !!! | CATAGAAAAAAACATGATTT+TGG | + | chr1_1:29478591-29478610 | None:intergenic | 20.0% |
| !! | TTAATACAAAAAACGATGAT+TGG | - | chr1_1:29478707-29478726 | Msa0017660:CDS | 20.0% |
| !!! | CTGATAAATTTTTATGTCAT+TGG | - | chr1_1:29478739-29478758 | Msa0017660:CDS | 20.0% |
| !! | TCTTAAGAAGATAAGATAAA+GGG | + | chr1_1:29478903-29478922 | None:intergenic | 20.0% |
| !! | TTCTTAAGAAGATAAGATAA+AGG | + | chr1_1:29478904-29478923 | None:intergenic | 20.0% |
| !! | ATAAAATGGCGTTAAATTTA+TGG | + | chr1_1:29479080-29479099 | None:intergenic | 20.0% |
| !! | AGAATGAATGAAACTTTATA+TGG | + | chr1_1:29479166-29479185 | None:intergenic | 20.0% |
| !!! | AGGTTTTGATGAATTTTTTT+GGG | - | chr1_1:29479904-29479923 | Msa0017660:intron | 20.0% |
| !! | TATATAGTATTGTCAAATAG+CGG | + | chr1_1:29480102-29480121 | None:intergenic | 20.0% |
| !!! | AAAACATTTAGGTTTATGTA+AGG | - | chr1_1:29480279-29480298 | Msa0017660:intron | 20.0% |
| !!! | AAACATTTAGGTTTATGTAA+GGG | - | chr1_1:29480280-29480299 | Msa0017660:intron | 20.0% |
| !! | TTATGCAAAGTTATATTGTA+AGG | - | chr1_1:29480520-29480539 | Msa0017660:intron | 20.0% |
| !! | TATGCAAAGTTATATTGTAA+GGG | - | chr1_1:29480521-29480540 | Msa0017660:intron | 20.0% |
| !! | TATTAATAGCTTAAGCATAT+AGG | + | chr1_1:29480854-29480873 | None:intergenic | 20.0% |
| !! | ATGCTTAAGCTATTAATATA+CGG | - | chr1_1:29480856-29480875 | Msa0017660:intron | 20.0% |
| !! | ACTTAATTTATCATTTGATG+CGG | + | chr1_1:29480938-29480957 | None:intergenic | 20.0% |
| !!! | AAATTAAGTTGTGAAGAATA+AGG | - | chr1_1:29480949-29480968 | Msa0017660:intron | 20.0% |
| !!! | AATTAAGTTGTGAAGAATAA+GGG | - | chr1_1:29480950-29480969 | Msa0017660:intron | 20.0% |
| !! | TTCATGCCTTTAATAATTTA+AGG | + | chr1_1:29481031-29481050 | None:intergenic | 20.0% |
| !!! | CTTTAACAATTTAAGCTTTT+AGG | + | chr1_1:29481697-29481716 | None:intergenic | 20.0% |
| !! | CTAAAAGCTTAAATTGTTAA+AGG | - | chr1_1:29481695-29481714 | Msa0017660:intron | 20.0% |
| !!! | TCTAGCTTAAAATATCATTT+AGG | - | chr1_1:29482257-29482276 | Msa0017660:intron | 20.0% |
| !! | CTAGCTTAAAATATCATTTA+GGG | - | chr1_1:29482258-29482277 | Msa0017660:intron | 20.0% |
| !! | AATACTAAAACATTGTCATT+TGG | - | chr1_1:29482289-29482308 | Msa0017660:intron | 20.0% |
| !! | AATACTAAAACATTGTCATT+TGG | - | chr1_1:29482289-29482308 | Msa0017660:intron | 20.0% |
| !!! | TGATAGTCGTTTATTTTTAT+AGG | - | chr1_1:29484478-29484497 | Msa0017660:CDS | 20.0% |
| !!! | AGAAATTTTATTATATGGCA+TGG | - | chr1_1:29485342-29485361 | Msa0017660:intron | 20.0% |
| ! | GAATGAAACTGTGAAAAATA+AGG | + | chr1_1:29478550-29478569 | None:intergenic | 25.0% |
| ! | GAAAAAACTGATTGATGAAA+GGG | + | chr1_1:29478851-29478870 | None:intergenic | 25.0% |
| ! | TGAAAAAACTGATTGATGAA+AGG | + | chr1_1:29478852-29478871 | None:intergenic | 25.0% |
| ! | GGAGTAATAAATGCATAAAA+TGG | + | chr1_1:29479094-29479113 | None:intergenic | 25.0% |
| !! | GTATACACAATTAAGCATTT+TGG | - | chr1_1:29479366-29479385 | Msa0017660:intron | 25.0% |
| ! | ATATTATGGATCAGATTTGA+AGG | + | chr1_1:29479477-29479496 | None:intergenic | 25.0% |
| ! | GTTCTTTATCACTCATATTA+TGG | + | chr1_1:29479491-29479510 | None:intergenic | 25.0% |
| ! | AAAGGGTAATTCTTAATCTT+AGG | + | chr1_1:29479537-29479556 | None:intergenic | 25.0% |
| ! | TTATAAAAAACAGATGAAGG+AGG | + | chr1_1:29479702-29479721 | None:intergenic | 25.0% |
| ! | CTCTTATAAAAAACAGATGA+AGG | + | chr1_1:29479705-29479724 | None:intergenic | 25.0% |
| ! | AAAATATACATACCTGACTA+GGG | + | chr1_1:29479734-29479753 | None:intergenic | 25.0% |
| !!! | GAGGTTTTGATGAATTTTTT+TGG | - | chr1_1:29479903-29479922 | Msa0017660:intron | 25.0% |
| !!! | TTTTTTTGGGTTATAGATTG+TGG | - | chr1_1:29479917-29479936 | Msa0017660:intron | 25.0% |
| !! | TGAGAATATAACATGCTTTT+GGG | - | chr1_1:29480379-29480398 | Msa0017660:intron | 25.0% |
| ! | TACGCAGAAAATGATAAAAA+GGG | + | chr1_1:29480496-29480515 | None:intergenic | 25.0% |
| ! | TTACGCAGAAAATGATAAAA+AGG | + | chr1_1:29480497-29480516 | None:intergenic | 25.0% |
| !!! | ATTTACTTTTACTGCATGTT+CGG | - | chr1_1:29480734-29480753 | Msa0017660:intron | 25.0% |
| ! | AACTCGTTGTGATTAAATTA+CGG | - | chr1_1:29480807-29480826 | Msa0017660:intron | 25.0% |
| !! | AAGGCATGAAATTAGTTTAA+AGG | - | chr1_1:29481041-29481060 | Msa0017660:intron | 25.0% |
| !! | AGGCATGAAATTAGTTTAAA+GGG | - | chr1_1:29481042-29481061 | Msa0017660:intron | 25.0% |
| ! | AACGAGATATCAGAAATATT+AGG | + | chr1_1:29481096-29481115 | None:intergenic | 25.0% |
| !!! | ATTGACTTTTGTGAAATGTT+AGG | + | chr1_1:29481138-29481157 | None:intergenic | 25.0% |
| ! | ATTAGAATTCTAACAGAATC+TGG | - | chr1_1:29481244-29481263 | Msa0017660:intron | 25.0% |
| ! | ACTTAATAGCTTAAGTTTAG+AGG | + | chr1_1:29481327-29481346 | None:intergenic | 25.0% |
| ! | AAACTTAAGCTATTAAGTGA+AGG | - | chr1_1:29481329-29481348 | Msa0017660:intron | 25.0% |
| ! | ATATTAACCTGTGAAGAATA+AGG | - | chr1_1:29481421-29481440 | Msa0017660:intron | 25.0% |
| ! | AGATATCTGGATATATATTG+TGG | + | chr1_1:29481765-29481784 | None:intergenic | 25.0% |
| ! | AATCACTTTAACAAGATATC+TGG | + | chr1_1:29481778-29481797 | None:intergenic | 25.0% |
| ! | ATTTACATATGTGGAATCTT+AGG | + | chr1_1:29481811-29481830 | None:intergenic | 25.0% |
| !! | TCTCCATATTTTATCTCAAT+GGG | + | chr1_1:29481964-29481983 | None:intergenic | 25.0% |
| !! | TTCTCCATATTTTATCTCAA+TGG | + | chr1_1:29481965-29481984 | None:intergenic | 25.0% |
| !! | ATTAGAGTTCTAACAGAATT+TGG | - | chr1_1:29482123-29482142 | Msa0017660:intron | 25.0% |
| ! | AATCACTTTAACAAGATATC+TGG | + | chr1_1:29481778-29481797 | None:intergenic | 25.0% |
| ! | ATTTACATATGTGGAATCTT+AGG | + | chr1_1:29481811-29481830 | None:intergenic | 25.0% |
| ! | ATTTCCCATTGAGATAAATA+TGG | - | chr1_1:29482620-29482639 | Msa0017660:intron | 25.0% |
| ! | TTCTCCATATTTATCTCAAT+GGG | + | chr1_1:29482627-29482646 | None:intergenic | 25.0% |
| !! | ATTAGAGTTCTAACAGAATT+TGG | - | chr1_1:29482123-29482142 | Msa0017660:intron | 25.0% |
| !! | TCTAGCTTACAATATCATTT+CGG | - | chr1_1:29482919-29482938 | Msa0017660:intron | 25.0% |
| ! | AATGTAACAGCTAAATGATA+AGG | - | chr1_1:29483101-29483120 | Msa0017660:intron | 25.0% |
| !!! | AGGTTCTCAACTATTTTAAT+AGG | + | chr1_1:29483221-29483240 | None:intergenic | 25.0% |
| ! | TTAATCTGTGTTATCAATCT+TGG | + | chr1_1:29483553-29483572 | None:intergenic | 25.0% |
| ! | TTGAATATTTATTGTGCATG+TGG | - | chr1_1:29483595-29483614 | Msa0017660:intron | 25.0% |
| ! | TTGAATATTTATTGTGCATG+TGG | - | chr1_1:29483595-29483614 | Msa0017660:intron | 25.0% |
| ! | CAATTATCTGATAAAGATAC+TGG | + | chr1_1:29484109-29484128 | None:intergenic | 25.0% |
| !!! | TTCTCGAGTTATTGTTATTT+CGG | - | chr1_1:29484243-29484262 | Msa0017660:CDS | 25.0% |
| ! | TGCTTAGGTTTATGTTAATA+TGG | - | chr1_1:29484568-29484587 | Msa0017660:CDS | 25.0% |
| ! | TGGAAAAACAGATATTACAA+AGG | - | chr1_1:29485103-29485122 | Msa0017660:intron | 25.0% |
| ! | TAGAGTTTCTATTGTTATAC+AGG | + | chr1_1:29485163-29485182 | None:intergenic | 25.0% |
| ! | CTCAAAAGTTATGAAAATTG+AGG | + | chr1_1:29485418-29485437 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTTCCTTCTTACG+AGG | - | chr1_1:29478440-29478459 | Msa0017660:three_prime_UTR | 30.0% |
| ATTACGATCCGATAAATCTA+AGG | - | chr1_1:29478764-29478783 | Msa0017660:CDS | 30.0% | |
| TTACGATCCGATAAATCTAA+GGG | - | chr1_1:29478765-29478784 | Msa0017660:CDS | 30.0% | |
| ! | TGGGTCAACTTTTGAATATA+CGG | + | chr1_1:29478979-29478998 | None:intergenic | 30.0% |
| CACTACAATAAAACAAGCTA+TGG | + | chr1_1:29479027-29479046 | None:intergenic | 30.0% | |
| TCTTTCATAACCCTTAATAG+AGG | - | chr1_1:29479133-29479152 | Msa0017660:CDS | 30.0% | |
| CTTTCATAACCCTTAATAGA+GGG | - | chr1_1:29479134-29479153 | Msa0017660:CDS | 30.0% | |
| TCTGAAGAAGGAAAATCAAA+AGG | - | chr1_1:29479273-29479292 | Msa0017660:CDS | 30.0% | |
| CTGAAGAAGGAAAATCAAAA+GGG | - | chr1_1:29479274-29479293 | Msa0017660:CDS | 30.0% | |
| TGAGTGATAAAGAACTTCTT+TGG | - | chr1_1:29479496-29479515 | Msa0017660:intron | 30.0% | |
| TCTTAGGAACTCTTTCAAAA+GGG | + | chr1_1:29479554-29479573 | None:intergenic | 30.0% | |
| ATCTTAGGAACTCTTTCAAA+AGG | + | chr1_1:29479555-29479574 | None:intergenic | 30.0% | |
| AGGAACATAAAAGCAATCTT+AGG | + | chr1_1:29479570-29479589 | None:intergenic | 30.0% | |
| ! | GCTTTTATGTTCCTTACTAA+AGG | - | chr1_1:29479576-29479595 | Msa0017660:intron | 30.0% |
| CAAAATATACATACCTGACT+AGG | + | chr1_1:29479735-29479754 | None:intergenic | 30.0% | |
| CCTCAAAACAATCATAAACA+AGG | + | chr1_1:29479887-29479906 | None:intergenic | 30.0% | |
| !! | CCTTGTTTATGATTGTTTTG+AGG | - | chr1_1:29479884-29479903 | Msa0017660:intron | 30.0% |
| TTACTTTCTGATTTCTGTTC+TGG | - | chr1_1:29479968-29479987 | Msa0017660:intron | 30.0% | |
| AAGTTCCACTAAACTAATAG+CGG | - | chr1_1:29480162-29480181 | Msa0017660:intron | 30.0% | |
| TCAAGTACAATGTTGTCAAA+TGG | + | chr1_1:29480198-29480217 | None:intergenic | 30.0% | |
| TAGAACTACATAAGGAACTA+AGG | - | chr1_1:29480235-29480254 | Msa0017660:intron | 30.0% | |
| AACTAAGGAAAGACTTATGA+GGG | - | chr1_1:29480250-29480269 | Msa0017660:intron | 30.0% | |
| ! | GAGGGTATACAAAAACATTT+AGG | - | chr1_1:29480268-29480287 | Msa0017660:intron | 30.0% |
| ! | GTGAGAATATAACATGCTTT+TGG | - | chr1_1:29480378-29480397 | Msa0017660:intron | 30.0% |
| AGGAAAAAATAAGATCACTC+AGG | - | chr1_1:29480564-29480583 | Msa0017660:intron | 30.0% | |
| GGAAAAAATAAGATCACTCA+GGG | - | chr1_1:29480565-29480584 | Msa0017660:intron | 30.0% | |
| AAGTAATTGTTGCCTATTCA+TGG | - | chr1_1:29480622-29480641 | Msa0017660:intron | 30.0% | |
| CAACGAGTTTGATGAAATAA+AGG | + | chr1_1:29480796-29480815 | None:intergenic | 30.0% | |
| ACTCGTTGTGATTAAATTAC+GGG | - | chr1_1:29480808-29480827 | Msa0017660:intron | 30.0% | |
| AATTTATCATTTGATGCGGT+GGG | + | chr1_1:29480934-29480953 | None:intergenic | 30.0% | |
| TAATTTATCATTTGATGCGG+TGG | + | chr1_1:29480935-29480954 | None:intergenic | 30.0% | |
| AAATATTAGGCTATGAACAG+AGG | + | chr1_1:29481083-29481102 | None:intergenic | 30.0% | |
| ACCAATTGTTGACATAGTTA+AGG | - | chr1_1:29481188-29481207 | Msa0017660:intron | 30.0% | |
| ACCTTAACTATGTCAACAAT+TGG | + | chr1_1:29481192-29481211 | None:intergenic | 30.0% | |
| TAAAGTTAGTTAGTGCTTGT+AGG | - | chr1_1:29481215-29481234 | Msa0017660:intron | 30.0% | |
| GCTTAAGTTTAGAGGAAATT+TGG | + | chr1_1:29481319-29481338 | None:intergenic | 30.0% | |
| TATTAAGTGAAGGACATGAT+TGG | - | chr1_1:29481339-29481358 | Msa0017660:intron | 30.0% | |
| GAGTTTCCAATATTGTGTAT+GGG | - | chr1_1:29481663-29481682 | Msa0017660:intron | 30.0% | |
| TCTCCCATTGAGATAAAATA+TGG | - | chr1_1:29481958-29481977 | Msa0017660:intron | 30.0% | |
| TAGTACTAGTTAGAGTTAGT+TGG | - | chr1_1:29482084-29482103 | Msa0017660:intron | 30.0% | |
| GATGTAGGGAGAAAAAAATT+AGG | - | chr1_1:29482163-29482182 | Msa0017660:intron | 30.0% | |
| ! | TAAAACATTGTCATTTGGTG+AGG | - | chr1_1:29482294-29482313 | Msa0017660:intron | 30.0% |
| GTTCTCCATATTTATCTCAA+TGG | + | chr1_1:29482628-29482647 | None:intergenic | 30.0% | |
| TTAACTAAGTCAGCAATTGA+GGG | + | chr1_1:29482730-29482749 | None:intergenic | 30.0% | |
| GATGTAGGGAGAAAAAAATT+AGG | - | chr1_1:29482163-29482182 | Msa0017660:intron | 30.0% | |
| CTAGCTTACAATATCATTTC+GGG | - | chr1_1:29482920-29482939 | Msa0017660:intron | 30.0% | |
| ! | TAAAACATTGTCATTTGGTG+AGG | - | chr1_1:29482294-29482313 | Msa0017660:intron | 30.0% |
| ! | CATTAAAACGTTGTCATTTC+AGG | + | chr1_1:29483066-29483085 | None:intergenic | 30.0% |
| !! | TCTCGAGTTATTGTTATTTC+GGG | - | chr1_1:29484244-29484263 | Msa0017660:CDS | 30.0% |
| ATTAGCAAGTAGTCTTCTTT+CGG | + | chr1_1:29484667-29484686 | None:intergenic | 30.0% | |
| !! | ATTTTGTAACGTTGACTAGA+GGG | + | chr1_1:29484860-29484879 | None:intergenic | 30.0% |
| TTCGAACTTAGGATAAAATG+CGG | + | chr1_1:29484946-29484965 | None:intergenic | 30.0% | |
| GAATTCACCATATCTAACAA+AGG | + | chr1_1:29485233-29485252 | None:intergenic | 30.0% | |
| ! | TTTTATTATATGGCATGGCA+TGG | - | chr1_1:29485347-29485366 | Msa0017660:intron | 30.0% |
| GAATGTACAAATGAGCTTAT+TGG | - | chr1_1:29485446-29485465 | Msa0017660:five_prime_UTR | 30.0% | |
| !!! | TTTTTTTCCTTCTTACGAGG+TGG | - | chr1_1:29478443-29478462 | Msa0017660:three_prime_UTR | 35.0% |
| ACATACATAGCGATCTTTGA+AGG | + | chr1_1:29478647-29478666 | None:intergenic | 35.0% | |
| !! | CTCTGAAATAAGTCGATTGA+GGG | - | chr1_1:29478684-29478703 | Msa0017660:CDS | 35.0% |
| TACGATCCGATAAATCTAAG+GGG | - | chr1_1:29478766-29478785 | Msa0017660:CDS | 35.0% | |
| CAAAAGCCCCTTAGATTTAT+CGG | + | chr1_1:29478775-29478794 | None:intergenic | 35.0% | |
| AAACTGATTGATGAAAGGGA+TGG | + | chr1_1:29478847-29478866 | None:intergenic | 35.0% | |
| AGAACAAGATTATGGCACAT+GGG | + | chr1_1:29478948-29478967 | None:intergenic | 35.0% | |
| ! | AACTTTTGAATATACGGGGT+CGG | + | chr1_1:29478973-29478992 | None:intergenic | 35.0% |
| ! | GGTCAACTTTTGAATATACG+GGG | + | chr1_1:29478977-29478996 | None:intergenic | 35.0% |
| ! | GGGTCAACTTTTGAATATAC+GGG | + | chr1_1:29478978-29478997 | None:intergenic | 35.0% |
| GGCGTTAAATTTATGGTCTA+CGG | + | chr1_1:29479073-29479092 | None:intergenic | 35.0% | |
| ! | TTTTAAGCAAGATGCAATCG+AGG | - | chr1_1:29479241-29479260 | Msa0017660:CDS | 35.0% |
| TTTAAGCAAGATGCAATCGA+GGG | - | chr1_1:29479242-29479261 | Msa0017660:CDS | 35.0% | |
| AAAACACAACACATAGTGCA+AGG | + | chr1_1:29479335-29479354 | None:intergenic | 35.0% | |
| TTATGGATCAGATTTGAAGG+AGG | + | chr1_1:29479474-29479493 | None:intergenic | 35.0% | |
| GGCTGATATGCACTTTATTA+TGG | - | chr1_1:29479938-29479957 | Msa0017660:intron | 35.0% | |
| ! | CTATACCGCTATTAGTTTAG+TGG | + | chr1_1:29480170-29480189 | None:intergenic | 35.0% |
| AGTACAATGTTGTCAAATGG+TGG | + | chr1_1:29480195-29480214 | None:intergenic | 35.0% | |
| ATTGTACTTGATCAGTTCAC+CGG | - | chr1_1:29480207-29480226 | Msa0017660:intron | 35.0% | |
| GAACTAAGGAAAGACTTATG+AGG | - | chr1_1:29480249-29480268 | Msa0017660:intron | 35.0% | |
| TCGACGAGTTAAATTTCTCA+AGG | - | chr1_1:29480326-29480345 | Msa0017660:intron | 35.0% | |
| CGACGAGTTAAATTTCTCAA+GGG | - | chr1_1:29480327-29480346 | Msa0017660:intron | 35.0% | |
| ATAAGTGTGCAGAAACATGT+TGG | - | chr1_1:29480412-29480431 | Msa0017660:intron | 35.0% | |
| ACGTATAATTAGGTCGTATG+TGG | + | chr1_1:29480442-29480461 | None:intergenic | 35.0% | |
| CCAACTAGGTACGTATAATT+AGG | + | chr1_1:29480452-29480471 | None:intergenic | 35.0% | |
| CCTAATTATACGTACCTAGT+TGG | - | chr1_1:29480449-29480468 | Msa0017660:intron | 35.0% | |
| TGAATTTGCAACAACCAACT+AGG | + | chr1_1:29480466-29480485 | None:intergenic | 35.0% | |
| CATGATACAAGTTTGAGAGA+AGG | - | chr1_1:29480544-29480563 | Msa0017660:intron | 35.0% | |
| ATAAGATCACTCAGGGATTA+AGG | - | chr1_1:29480572-29480591 | Msa0017660:intron | 35.0% | |
| ATTACTTCCATGTCTCTTCT+TGG | + | chr1_1:29480609-29480628 | None:intergenic | 35.0% | |
| ACAGATAACAGACCATGAAT+AGG | + | chr1_1:29480637-29480656 | None:intergenic | 35.0% | |
| GTCTGTTATCTGTTTGTAGA+GGG | - | chr1_1:29480644-29480663 | Msa0017660:intron | 35.0% | |
| !! | TGCACGTATTTTGGATTTCA+TGG | - | chr1_1:29480695-29480714 | Msa0017660:intron | 35.0% |
| !! | GCACGTATTTTGGATTTCAT+GGG | - | chr1_1:29480696-29480715 | Msa0017660:intron | 35.0% |
| ! | TTTTGGATTTCATGGGAAGA+TGG | - | chr1_1:29480703-29480722 | Msa0017660:intron | 35.0% |
| ! | TTTTACTGCATGTTCGGATT+TGG | - | chr1_1:29480740-29480759 | Msa0017660:intron | 35.0% |
| CGAGTTTGATGAAATAAAGG+CGG | + | chr1_1:29480793-29480812 | None:intergenic | 35.0% | |
| CTCGTTGTGATTAAATTACG+GGG | - | chr1_1:29480809-29480828 | Msa0017660:intron | 35.0% | |
| GCTTAAGCATATAGGAAAGT+TGG | + | chr1_1:29480846-29480865 | None:intergenic | 35.0% | |
| GCTATTAATATACGGACACA+TGG | - | chr1_1:29480864-29480883 | Msa0017660:intron | 35.0% | |
| TTAATATACGGACACATGGT+TGG | - | chr1_1:29480868-29480887 | Msa0017660:intron | 35.0% | |
| TAAGTTGTGAAGAATAAGGG+TGG | - | chr1_1:29480953-29480972 | Msa0017660:intron | 35.0% | |
| CTTAAAAGTCTACAGCAAAC+AGG | - | chr1_1:29481160-29481179 | Msa0017660:intron | 35.0% | |
| AATTCTAACAGAATCTGGCA+CGG | - | chr1_1:29481249-29481268 | Msa0017660:intron | 35.0% | |
| AAAACTGTAGGGAGAAGATT+AGG | - | chr1_1:29481281-29481300 | Msa0017660:intron | 35.0% | |
| CTGTGTATCATCACACTTTA+TGG | + | chr1_1:29481381-29481400 | None:intergenic | 35.0% | |
| AGGTTAATATCAGCATGCAA+TGG | + | chr1_1:29481411-29481430 | None:intergenic | 35.0% | |
| TAACCTGTGAAGAATAAGGA+TGG | - | chr1_1:29481425-29481444 | Msa0017660:intron | 35.0% | |
| CGATAAGTGATTGACAACAT+TGG | - | chr1_1:29481615-29481634 | Msa0017660:intron | 35.0% | |
| TGGTAGAAATTCAGATCACT+TGG | - | chr1_1:29481635-29481654 | Msa0017660:intron | 35.0% | |
| AAATTCAGATCACTTGGTCA+AGG | - | chr1_1:29481641-29481660 | Msa0017660:intron | 35.0% | |
| GGAGTTTCCAATATTGTGTA+TGG | - | chr1_1:29481662-29481681 | Msa0017660:intron | 35.0% | |
| CCATGTCTCATTTACATATG+TGG | + | chr1_1:29481820-29481839 | None:intergenic | 35.0% | |
| CCACATATGTAAATGAGACA+TGG | - | chr1_1:29481817-29481836 | Msa0017660:intron | 35.0% | |
| ! | TTGAAATCCTTAAAGTGTCC+CGG | + | chr1_1:29481860-29481879 | None:intergenic | 35.0% |
| CTTAAAAGCCTACATCAAAC+AGG | - | chr1_1:29482033-29482052 | Msa0017660:intron | 35.0% | |
| TTAACTAAGTCAGCAATTGG+GGG | + | chr1_1:29482062-29482081 | None:intergenic | 35.0% | |
| CTTAACTAAGTCAGCAATTG+GGG | + | chr1_1:29482063-29482082 | None:intergenic | 35.0% | |
| CCTTAACTAAGTCAGCAATT+GGG | + | chr1_1:29482064-29482083 | None:intergenic | 35.0% | |
| ACCTTAACTAAGTCAGCAAT+TGG | + | chr1_1:29482065-29482084 | None:intergenic | 35.0% | |
| !! | TTTGACTTTTGACAACCTTG+CGG | + | chr1_1:29482189-29482208 | None:intergenic | 35.0% |
| AACAAGTTTGCAAGTAGACT+CGG | - | chr1_1:29482324-29482343 | Msa0017660:intron | 35.0% | |
| ! | TTTCAAGTGGACTCTTATGA+TGG | - | chr1_1:29482351-29482370 | Msa0017660:intron | 35.0% |
| TCCACATATGTAAATGAGAC+AGG | - | chr1_1:29481816-29481835 | Msa0017660:intron | 35.0% | |
| CCACATATGTAAATGAGACA+GGG | - | chr1_1:29481817-29481836 | Msa0017660:intron | 35.0% | |
| CTTAAAAGCCTACATCAAAC+AGG | - | chr1_1:29482033-29482052 | Msa0017660:intron | 35.0% | |
| CTTAACTAAGTCAGCAATTG+AGG | + | chr1_1:29482063-29482082 | None:intergenic | 35.0% | |
| !! | CTCAATTGCTGACTTAGTTA+AGG | - | chr1_1:29482729-29482748 | Msa0017660:intron | 35.0% |
| !! | TAGAGTTAGTTTGTGCTTGT+AGG | - | chr1_1:29482756-29482775 | Msa0017660:intron | 35.0% |
| TCATAACCATATGAGTCTCT+AGG | - | chr1_1:29482880-29482899 | Msa0017660:intron | 35.0% | |
| TTGATACCTAGAGACTCATA+TGG | + | chr1_1:29482889-29482908 | None:intergenic | 35.0% | |
| ! | TGTCATTTGGTGAGGAAAAT+TGG | - | chr1_1:29482964-29482983 | Msa0017660:intron | 35.0% |
| AGTAGACTCAGATCATTTCA+AGG | - | chr1_1:29482998-29483017 | Msa0017660:intron | 35.0% | |
| TTTCAAGGAAACTCGTATGA+TGG | - | chr1_1:29483013-29483032 | Msa0017660:intron | 35.0% | |
| GGTTAATGTTTAGTGCACTA+TGG | + | chr1_1:29483129-29483148 | None:intergenic | 35.0% | |
| ATACCTAAAATGCCCTTACT+AGG | + | chr1_1:29483195-29483214 | None:intergenic | 35.0% | |
| !!! | CTCTTTTTTTTACCTCATCG+TGG | - | chr1_1:29483323-29483342 | Msa0017660:intron | 35.0% |
| TCTGTGTTATCAATCTTGGA+TGG | + | chr1_1:29483549-29483568 | None:intergenic | 35.0% | |
| !! | TGTGTTTGTTGAGTTGAGAT+TGG | - | chr1_1:29483910-29483929 | Msa0017660:intron | 35.0% |
| !!! | TGTTGAGTTGAGATTGGTTT+TGG | - | chr1_1:29483916-29483935 | Msa0017660:intron | 35.0% |
| !!! | GAGATTGGTTTTGGTTCTTT+AGG | - | chr1_1:29483925-29483944 | Msa0017660:intron | 35.0% |
| !!! | TTGGTTTTGGTTCTTTAGGA+TGG | - | chr1_1:29483929-29483948 | Msa0017660:intron | 35.0% |
| TTCATCACTTGTTCAAGCTA+AGG | - | chr1_1:29484004-29484023 | Msa0017660:intron | 35.0% | |
| TCATCACTTGTTCAAGCTAA+GGG | - | chr1_1:29484005-29484024 | Msa0017660:intron | 35.0% | |
| !! | ACGCAAAAAGAGCATCTTTA+TGG | + | chr1_1:29484143-29484162 | None:intergenic | 35.0% |
| ! | GCTCTTTTTGCGTTAAGAAT+CGG | - | chr1_1:29484150-29484169 | Msa0017660:intron | 35.0% |
| TTAAGAATCGGTAAAGACTG+CGG | - | chr1_1:29484162-29484181 | Msa0017660:intron | 35.0% | |
| TGCGGATATGAATAGCATTT+GGG | - | chr1_1:29484180-29484199 | Msa0017660:intron | 35.0% | |
| GATATGAATAGCATTTGGGT+AGG | - | chr1_1:29484184-29484203 | Msa0017660:intron | 35.0% | |
| ACACCATATCTTCACCATAT+GGG | + | chr1_1:29484358-29484377 | None:intergenic | 35.0% | |
| ! | TTTTGTTGCAGTTCTCTGTT+GGG | + | chr1_1:29484440-29484459 | None:intergenic | 35.0% |
| ! | TTTTTGTTGCAGTTCTCTGT+TGG | + | chr1_1:29484441-29484460 | None:intergenic | 35.0% |
| CAATAGAATAAACCGCTCAT+TGG | + | chr1_1:29484706-29484725 | None:intergenic | 35.0% | |
| CTAGACTGAATTTGTAGAGA+GGG | + | chr1_1:29484743-29484762 | None:intergenic | 35.0% | |
| ACTAGACTGAATTTGTAGAG+AGG | + | chr1_1:29484744-29484763 | None:intergenic | 35.0% | |
| AAATCCAAATTCAGCTTCGT+CGG | - | chr1_1:29484780-29484799 | Msa0017660:intron | 35.0% | |
| !! | TTTTGTAACGTTGACTAGAG+GGG | + | chr1_1:29484859-29484878 | None:intergenic | 35.0% |
| !! | CATTTTGTAACGTTGACTAG+AGG | + | chr1_1:29484861-29484880 | None:intergenic | 35.0% |
| CTCTAGTCAACGTTACAAAA+TGG | - | chr1_1:29484859-29484878 | Msa0017660:intron | 35.0% | |
| AACGTTACAAAATGGCGTAA+AGG | - | chr1_1:29484867-29484886 | Msa0017660:intron | 35.0% | |
| CTACAGTATTGTTCGAACTT+AGG | + | chr1_1:29484957-29484976 | None:intergenic | 35.0% | |
| AACCATGTTAACCATTCAAG+CGG | - | chr1_1:29485010-29485029 | Msa0017660:intron | 35.0% | |
| ! | TTTTCCAAATGTAGCTGGAT+GGG | + | chr1_1:29485090-29485109 | None:intergenic | 35.0% |
| ! | TTTTTCCAAATGTAGCTGGA+TGG | + | chr1_1:29485091-29485110 | None:intergenic | 35.0% |
| !! | TCTGTTTTTCCAAATGTAGC+TGG | + | chr1_1:29485095-29485114 | None:intergenic | 35.0% |
| !!! | GAGTTTTTTGATAGAGTTCG+TGG | - | chr1_1:29485125-29485144 | Msa0017660:intron | 35.0% |
| !!! | TTTTTTGATAGAGTTCGTGG+AGG | - | chr1_1:29485128-29485147 | Msa0017660:intron | 35.0% |
| CATATCTAACAAAGGTTCCA+AGG | + | chr1_1:29485225-29485244 | None:intergenic | 35.0% | |
| CTTGGAACCTTTGTTAGATA+TGG | - | chr1_1:29485223-29485242 | Msa0017660:intron | 35.0% | |
| ! | CCTCAATCGACTTATTTCAG+AGG | + | chr1_1:29478686-29478705 | None:intergenic | 40.0% |
| !! | CCTCTGAAATAAGTCGATTG+AGG | - | chr1_1:29478683-29478702 | Msa0017660:CDS | 40.0% |
| !! | TAAGGGGCTTTTGAGTAATC+TGG | - | chr1_1:29478782-29478801 | Msa0017660:CDS | 40.0% |
| !! | AAGGGGCTTTTGAGTAATCT+GGG | - | chr1_1:29478783-29478802 | Msa0017660:CDS | 40.0% |
| GATTGATGAAAGGGATGGTA+TGG | + | chr1_1:29478842-29478861 | None:intergenic | 40.0% | |
| GAGAACAAGATTATGGCACA+TGG | + | chr1_1:29478949-29478968 | None:intergenic | 40.0% | |
| TCGAAGTTGTAGACTATGCT+GGG | + | chr1_1:29478998-29479017 | None:intergenic | 40.0% | |
| ATCGAAGTTGTAGACTATGC+TGG | + | chr1_1:29478999-29479018 | None:intergenic | 40.0% | |
| TCATAACCCTTAATAGAGGG+TGG | - | chr1_1:29479137-29479156 | Msa0017660:CDS | 40.0% | |
| TGGTAACCACCCTCTATTAA+GGG | + | chr1_1:29479146-29479165 | None:intergenic | 40.0% | |
| ATGGTAACCACCCTCTATTA+AGG | + | chr1_1:29479147-29479166 | None:intergenic | 40.0% | |
| !!! | GCATTTTGGAATTCAGAGTG+TGG | - | chr1_1:29479380-29479399 | Msa0017660:intron | 40.0% |
| ! | ACTTCTTTGGAGAGCTTCTT+TGG | - | chr1_1:29479509-29479528 | Msa0017660:intron | 40.0% |
| ! | TTTGGGAGAGGTTTCTGAAA+GGG | - | chr1_1:29479619-29479638 | Msa0017660:intron | 40.0% |
| ! | TTGGCTTGATAAGAAGGAGT+TGG | + | chr1_1:29479675-29479694 | None:intergenic | 40.0% |
| ! | GGAAACTTGGCTTGATAAGA+AGG | + | chr1_1:29479681-29479700 | None:intergenic | 40.0% |
| AACAGATGAAGGAGGAAACT+TGG | + | chr1_1:29479694-29479713 | None:intergenic | 40.0% | |
| TAAGAGACAAATCCCTAGTC+AGG | - | chr1_1:29479719-29479738 | Msa0017660:intron | 40.0% | |
| ACTCGTCATGTAACAATGAC+GGG | + | chr1_1:29480011-29480030 | None:intergenic | 40.0% | |
| CACTCGTCATGTAACAATGA+CGG | + | chr1_1:29480012-29480031 | None:intergenic | 40.0% | |
| TTGTACTTGATCAGTTCACC+GGG | - | chr1_1:29480208-29480227 | Msa0017660:intron | 40.0% | |
| !! | CTTATGTAGTTCTAGCAACC+CGG | + | chr1_1:29480229-29480248 | None:intergenic | 40.0% |
| GGTCTGTTATCTGTTTGTAG+AGG | - | chr1_1:29480643-29480662 | Msa0017660:intron | 40.0% | |
| TGTTATCTGTTTGTAGAGGG+TGG | - | chr1_1:29480647-29480666 | Msa0017660:intron | 40.0% | |
| GTTATCTGTTTGTAGAGGGT+GGG | - | chr1_1:29480648-29480667 | Msa0017660:intron | 40.0% | |
| TTATCTGTTTGTAGAGGGTG+GGG | - | chr1_1:29480649-29480668 | Msa0017660:intron | 40.0% | |
| TACGTGCAGATCATCCATTT+AGG | + | chr1_1:29480683-29480702 | None:intergenic | 40.0% | |
| ! | TGGATGATCTGCACGTATTT+TGG | - | chr1_1:29480686-29480705 | Msa0017660:intron | 40.0% |
| CTATGATTCTACCTAACTCG+CGG | + | chr1_1:29480766-29480785 | None:intergenic | 40.0% | |
| TTAAATTACGGGGCTTGTCA+AGG | - | chr1_1:29480819-29480838 | Msa0017660:intron | 40.0% | |
| !!! | TGGTTGGTTTTACAGCCATT+TGG | - | chr1_1:29480884-29480903 | Msa0017660:intron | 40.0% |
| ! | CTCAGTATCATCGCATTTTG+TGG | + | chr1_1:29480910-29480929 | None:intergenic | 40.0% |
| TGTGAAGAATAAGGGTGGAA+AGG | - | chr1_1:29480958-29480977 | Msa0017660:intron | 40.0% | |
| GGACAAGCTACAAAACTGTA+GGG | - | chr1_1:29481270-29481289 | Msa0017660:intron | 40.0% | |
| !! | TGATTGGTTTGACAGCCATT+TGG | - | chr1_1:29481355-29481374 | Msa0017660:intron | 40.0% |
| CATCACACTTTATGGCCAAA+TGG | + | chr1_1:29481373-29481392 | None:intergenic | 40.0% | |
| TGTCCATCCTTATTCTTCAC+AGG | + | chr1_1:29481431-29481450 | None:intergenic | 40.0% | |
| TGTGAAGAATAAGGATGGAC+AGG | - | chr1_1:29481430-29481449 | Msa0017660:intron | 40.0% | |
| GCTAGTCCCATACACAATAT+TGG | + | chr1_1:29481672-29481691 | None:intergenic | 40.0% | |
| ! | TGAAATCCTTAAAGTGTCCC+GGG | + | chr1_1:29481859-29481878 | None:intergenic | 40.0% |
| AAATATGGAGAACTCCCTGT+CGG | - | chr1_1:29481973-29481992 | Msa0017660:intron | 40.0% | |
| !! | CCCAATTGCTGACTTAGTTA+AGG | - | chr1_1:29482061-29482080 | Msa0017660:intron | 40.0% |
| TAACAGAATTTGGCAGACAC+AGG | - | chr1_1:29482133-29482152 | Msa0017660:intron | 40.0% | |
| ACACAGGCTACAAAGATGTA+GGG | - | chr1_1:29482149-29482168 | Msa0017660:intron | 40.0% | |
| GAGAAAAAAATTAGGCCGCA+AGG | - | chr1_1:29482171-29482190 | Msa0017660:intron | 40.0% | |
| TTGATACCTAGAGTCTCATC+TGG | + | chr1_1:29482227-29482246 | None:intergenic | 40.0% | |
| TAGACTCGGATCATTTCAAG+TGG | - | chr1_1:29482338-29482357 | Msa0017660:intron | 40.0% | |
| CCCTGTCTCATTTACATATG+TGG | + | chr1_1:29482437-29482456 | None:intergenic | 40.0% | |
| !! | AATTCCTTAAAGAGTGTCCC+GGG | + | chr1_1:29482476-29482495 | None:intergenic | 40.0% |
| !! | GAATTCCTTAAAGAGTGTCC+CGG | + | chr1_1:29482477-29482496 | None:intergenic | 40.0% |
| TAACAGAATTTGGCAGACAC+AGG | - | chr1_1:29482133-29482152 | Msa0017660:intron | 40.0% | |
| ACACAGGCTACAAAGATGTA+GGG | - | chr1_1:29482149-29482168 | Msa0017660:intron | 40.0% | |
| ! | TTTGACTTTCGACAACTGTG+CGG | + | chr1_1:29482851-29482870 | None:intergenic | 40.0% |
| ! | TGTCATTTCAGGCATCTCAA+GGG | + | chr1_1:29483055-29483074 | None:intergenic | 40.0% |
| ! | TTGTCATTTCAGGCATCTCA+AGG | + | chr1_1:29483056-29483075 | None:intergenic | 40.0% |
| TGCACTAAACATTAACCTCG+CGG | - | chr1_1:29483132-29483151 | Msa0017660:intron | 40.0% | |
| TGCAAATCGTGTCCTAGTAA+GGG | - | chr1_1:29483180-29483199 | Msa0017660:intron | 40.0% | |
| !!! | TGTCCTAGTAAGGGCATTTT+AGG | - | chr1_1:29483189-29483208 | Msa0017660:intron | 40.0% |
| TTGCTGAGATGATGTTGCAA+TGG | + | chr1_1:29483359-29483378 | None:intergenic | 40.0% | |
| ATTGCAACATCATCTCAGCA+AGG | - | chr1_1:29483358-29483377 | Msa0017660:intron | 40.0% | |
| ! | AAATGCCAAGGAGGTATAGT+GGG | + | chr1_1:29483504-29483523 | None:intergenic | 40.0% |
| ! | AAAATGCCAAGGAGGTATAG+TGG | + | chr1_1:29483505-29483524 | None:intergenic | 40.0% |
| ! | ACTATACCTCCTTGGCATTT+TGG | - | chr1_1:29483504-29483523 | Msa0017660:intron | 40.0% |
| ! | CTATACCTCCTTGGCATTTT+GGG | - | chr1_1:29483505-29483524 | Msa0017660:intron | 40.0% |
| ! | TATACCTCCTTGGCATTTTG+GGG | - | chr1_1:29483506-29483525 | Msa0017660:intron | 40.0% |
| GTGTTATCAATCTTGGATGG+TGG | + | chr1_1:29483546-29483565 | None:intergenic | 40.0% | |
| ACAAGTGATGAACCTAGGTT+AGG | + | chr1_1:29483996-29484015 | None:intergenic | 40.0% | |
| CTTGAACAAGTGATGAACCT+AGG | + | chr1_1:29484001-29484020 | None:intergenic | 40.0% | |
| CTGCGGATATGAATAGCATT+TGG | - | chr1_1:29484179-29484198 | Msa0017660:intron | 40.0% | |
| TTTGGGTAGGATAACATAGC+TGG | - | chr1_1:29484197-29484216 | Msa0017660:CDS | 40.0% | |
| !! | AAGTGTTGATGTGTCAAGTG+TGG | - | chr1_1:29484273-29484292 | Msa0017660:CDS | 40.0% |
| !! | AGTGTTGATGTGTCAAGTGT+GGG | - | chr1_1:29484274-29484293 | Msa0017660:CDS | 40.0% |
| TCCACATCTTCATCCAATGT+CGG | + | chr1_1:29484308-29484327 | None:intergenic | 40.0% | |
| GACACCATATCTTCACCATA+TGG | + | chr1_1:29484359-29484378 | None:intergenic | 40.0% | |
| !! | ATGGTGTCCAAACCACTTTT+TGG | - | chr1_1:29484371-29484390 | Msa0017660:CDS | 40.0% |
| AGAGCAACCAAAAAGTGGTT+TGG | + | chr1_1:29484381-29484400 | None:intergenic | 40.0% | |
| GACTAAGAGCAACCAAAAAG+TGG | + | chr1_1:29484386-29484405 | None:intergenic | 40.0% | |
| !!! | TGCATCTGTTGCTTTTGCTT+AGG | - | chr1_1:29484553-29484572 | Msa0017660:CDS | 40.0% |
| TTCTTGTTCAGATTGCTGAG+TGG | - | chr1_1:29484619-29484638 | Msa0017660:CDS | 40.0% | |
| TCTTGTTCAGATTGCTGAGT+GGG | - | chr1_1:29484620-29484639 | Msa0017660:CDS | 40.0% | |
| TACTTGACATCTCCAATGAG+CGG | - | chr1_1:29484691-29484710 | Msa0017660:intron | 40.0% | |
| GTAGAGAGGGATACATGATT+CGG | + | chr1_1:29484730-29484749 | None:intergenic | 40.0% | |
| ! | TTTGATGATCCTGGTCCATA+CGG | - | chr1_1:29484807-29484826 | Msa0017660:intron | 40.0% |
| GTTCGAACAATACTGTAGAC+CGG | - | chr1_1:29484959-29484978 | Msa0017660:intron | 40.0% | |
| GCTTGAATGGTTAACATGGT+TGG | + | chr1_1:29485011-29485030 | None:intergenic | 40.0% | |
| ACCATGTTAACCATTCAAGC+GGG | - | chr1_1:29485011-29485030 | Msa0017660:intron | 40.0% | |
| ! | AAAATTTGCTCCTAGTGCCT+TGG | - | chr1_1:29485205-29485224 | Msa0017660:intron | 40.0% |
| !! | AGTGTCAAAGAGTACCAGCA+AGG | - | chr1_1:29478466-29478485 | Msa0017660:three_prime_UTR | 45.0% |
| ! | TTTTGCGTGATTGTCCTTGC+TGG | + | chr1_1:29478483-29478502 | None:intergenic | 45.0% |
| TGAAAGGGATGGTATGGTAC+AGG | + | chr1_1:29478836-29478855 | None:intergenic | 45.0% | |
| GGTCGGAGAGAACAAGATTA+TGG | + | chr1_1:29478956-29478975 | None:intergenic | 45.0% | |
| !! | AACGTGCTGGTTTGGAACAA+TGG | - | chr1_1:29479442-29479461 | Msa0017660:intron | 45.0% |
| GAGGCAATGGTCCTTTAGTA+AGG | + | chr1_1:29479590-29479609 | None:intergenic | 45.0% | |
| ATTGCCTCTTGCACCTGTTT+GGG | - | chr1_1:29479602-29479621 | Msa0017660:intron | 45.0% | |
| TTCAGAAACCTCTCCCAAAC+AGG | + | chr1_1:29479618-29479637 | None:intergenic | 45.0% | |
| GTTTGGGAGAGGTTTCTGAA+AGG | - | chr1_1:29479618-29479637 | Msa0017660:intron | 45.0% | |
| ATGACGAGTGTTATCAGTCG+CGG | - | chr1_1:29480022-29480041 | Msa0017660:intron | 45.0% | |
| CGGGTTGCTAGAACTACATA+AGG | - | chr1_1:29480227-29480246 | Msa0017660:intron | 45.0% | |
| ACTTCCATGTCTCTTCTTGG+AGG | + | chr1_1:29480606-29480625 | None:intergenic | 45.0% | |
| TATCTGTTTGTAGAGGGTGG+GGG | - | chr1_1:29480650-29480669 | Msa0017660:intron | 45.0% | |
| ! | CATCGCATTTTGTGGCCAAA+TGG | + | chr1_1:29480902-29480921 | None:intergenic | 45.0% |
| CGGACAAGCTACAAAACTGT+AGG | - | chr1_1:29481269-29481288 | Msa0017660:intron | 45.0% | |
| ACTATAGCGCTGTAGCATAG+CGG | - | chr1_1:29481567-29481586 | Msa0017660:intron | 45.0% | |
| ! | GAAATCCTTAAAGTGTCCCG+GGG | + | chr1_1:29481858-29481877 | None:intergenic | 45.0% |
| GACACAGGCTACAAAGATGT+AGG | - | chr1_1:29482148-29482167 | Msa0017660:intron | 45.0% | |
| TCAGAACCAGATGAGACTCT+AGG | - | chr1_1:29482218-29482237 | Msa0017660:intron | 45.0% | |
| !! | ATTCCTTAAAGAGTGTCCCG+GGG | + | chr1_1:29482475-29482494 | None:intergenic | 45.0% |
| TAAAAGCTGCCAACCAAGTC+GGG | + | chr1_1:29482653-29482672 | None:intergenic | 45.0% | |
| CTAAAAGCTGCCAACCAAGT+CGG | + | chr1_1:29482654-29482673 | None:intergenic | 45.0% | |
| GACACAGGCTACAAAGATGT+AGG | - | chr1_1:29482148-29482167 | Msa0017660:intron | 45.0% | |
| GTCATTTCAGGCATCTCAAG+GGG | + | chr1_1:29483054-29483073 | None:intergenic | 45.0% | |
| CTGCAAATCGTGTCCTAGTA+AGG | - | chr1_1:29483179-29483198 | Msa0017660:intron | 45.0% | |
| ! | TTGCTAGAGAGAGAAGCACA+AGG | + | chr1_1:29483249-29483268 | None:intergenic | 45.0% |
| GGATGAAATTGACCACGATG+AGG | + | chr1_1:29483338-29483357 | None:intergenic | 45.0% | |
| TACTACCCACTATACCTCCT+TGG | - | chr1_1:29483496-29483515 | Msa0017660:intron | 45.0% | |
| !! | TCTTGGATGGTGGAGCAAAA+TGG | + | chr1_1:29483536-29483555 | None:intergenic | 45.0% |
| ! | GTTCTGTCACTTCCTAACCT+AGG | - | chr1_1:29483981-29484000 | Msa0017660:intron | 45.0% |
| TCCGACATTGGATGAAGATG+TGG | - | chr1_1:29484304-29484323 | Msa0017660:CDS | 45.0% | |
| TGAGCAGCTATACAAGTGAG+AGG | - | chr1_1:29484331-29484350 | Msa0017660:CDS | 45.0% | |
| GAGCAGCTATACAAGTGAGA+GGG | - | chr1_1:29484332-29484351 | Msa0017660:CDS | 45.0% | |
| AGTTCTCTGTTGGGTCATGA+GGG | + | chr1_1:29484431-29484450 | None:intergenic | 45.0% | |
| CTTGTTCAGATTGCTGAGTG+GGG | - | chr1_1:29484621-29484640 | Msa0017660:CDS | 45.0% | |
| AATGGCGTAAAGGCTCTCAA+TGG | - | chr1_1:29484877-29484896 | Msa0017660:intron | 45.0% | |
| GGTGTCTTCCACAATATGGA+CGG | + | chr1_1:29484925-29484944 | None:intergenic | 45.0% | |
| ATGCGGTGTCTTCCACAATA+TGG | + | chr1_1:29484929-29484948 | None:intergenic | 45.0% | |
| CCATGTTAACCATTCAAGCG+GGG | - | chr1_1:29485012-29485031 | Msa0017660:intron | 45.0% | |
| TGGCAAATCGGAGCATAACT+TGG | - | chr1_1:29485042-29485061 | Msa0017660:intron | 45.0% | |
| GGCAAATCGGAGCATAACTT+GGG | - | chr1_1:29485043-29485062 | Msa0017660:intron | 45.0% | |
| AAATCGGAGCATAACTTGGG+TGG | - | chr1_1:29485046-29485065 | Msa0017660:intron | 45.0% | |
| ! | AACAAAGGTTCCAAGGCACT+AGG | + | chr1_1:29485218-29485237 | None:intergenic | 45.0% |
| ATGGTGATTGCCTCATTGGA+TGG | - | chr1_1:29485366-29485385 | Msa0017660:intron | 45.0% | |
| CTAGCATTCACCATCCAATG+AGG | + | chr1_1:29485379-29485398 | None:intergenic | 45.0% | |
| GGATGGTGAATGCTAGATGA+TGG | - | chr1_1:29485383-29485402 | Msa0017660:intron | 45.0% | |
| TGACACTCCACCTCGTAAGA+AGG | + | chr1_1:29478453-29478472 | None:intergenic | 50.0% | |
| TTGTCGTGCACACGAGCATA+GGG | + | chr1_1:29478519-29478538 | None:intergenic | 50.0% | |
| TTTGTCGTGCACACGAGCAT+AGG | + | chr1_1:29478520-29478539 | None:intergenic | 50.0% | |
| AAGGGATGGTATGGTACAGG+AGG | + | chr1_1:29478833-29478852 | None:intergenic | 50.0% | |
| CAAGATGCAATCGAGGGCTT+TGG | - | chr1_1:29479248-29479267 | Msa0017660:CDS | 50.0% | |
| ! | AGGGCTTTGGCATCTGAAGA+AGG | - | chr1_1:29479261-29479280 | Msa0017660:CDS | 50.0% |
| !! | CGTTGAAGAACGTGCTGGTT+TGG | - | chr1_1:29479434-29479453 | Msa0017660:intron | 50.0% |
| CAAACAGGTGCAAGAGGCAA+TGG | + | chr1_1:29479603-29479622 | None:intergenic | 50.0% | |
| CATTGCCTCTTGCACCTGTT+TGG | - | chr1_1:29479601-29479620 | Msa0017660:intron | 50.0% | |
| GCTTCCTCCAAGAAGAGACA+TGG | - | chr1_1:29480599-29480618 | Msa0017660:intron | 50.0% | |
| ATCTGTTTGTAGAGGGTGGG+GGG | - | chr1_1:29480651-29480670 | Msa0017660:intron | 50.0% | |
| AGGGAGAAGATTAGGCAGCA+TGG | - | chr1_1:29481289-29481308 | Msa0017660:intron | 50.0% | |
| GCTATGCTACAGCGCTATAG+TGG | + | chr1_1:29481568-29481587 | None:intergenic | 50.0% | |
| TCAGCTAAAAGCTGCCGACA+GGG | + | chr1_1:29481990-29482009 | None:intergenic | 50.0% | |
| AAATGCTAACAAGTGCCCCC+GGG | + | chr1_1:29482604-29482623 | None:intergenic | 50.0% | |
| GAAATGCTAACAAGTGCCCC+CGG | + | chr1_1:29482605-29482624 | None:intergenic | 50.0% | |
| ATATGGAGAACTCCCCGACT+TGG | - | chr1_1:29482637-29482656 | Msa0017660:intron | 50.0% | |
| AAAAGCTGCCAACCAAGTCG+GGG | + | chr1_1:29482652-29482671 | None:intergenic | 50.0% | |
| GAGGGCTTCCTGTTTGATGT+AGG | + | chr1_1:29482712-29482731 | None:intergenic | 50.0% | |
| AGTCTAGTGCTAAAACCGCG+AGG | + | chr1_1:29483150-29483169 | None:intergenic | 50.0% | |
| GACACGATTTGCAGCATCTG+TGG | + | chr1_1:29483173-29483192 | None:intergenic | 50.0% | |
| ! | GAGAGAAGCACAAGGTTGAG+AGG | + | chr1_1:29483241-29483260 | None:intergenic | 50.0% |
| AACAGAGGTCTGCACAGAGA+TGG | + | chr1_1:29483279-29483298 | None:intergenic | 50.0% | |
| AGCTCTGCAGCAAGAAACAG+AGG | + | chr1_1:29483294-29483313 | None:intergenic | 50.0% | |
| !! | GTGGGTTAGAAGTCCGACAT+TGG | - | chr1_1:29484292-29484311 | Msa0017660:CDS | 50.0% |
| TACAAGTGAGAGGGCCCATA+TGG | - | chr1_1:29484341-29484360 | Msa0017660:CDS | 50.0% | |
| GGGCCCATATGGTGAAGATA+TGG | - | chr1_1:29484352-29484371 | Msa0017660:CDS | 50.0% | |
| TAGTCTACCGTGATGATCCC+TGG | - | chr1_1:29484401-29484420 | Msa0017660:CDS | 50.0% | |
| AGTCTACCGTGATGATCCCT+GGG | - | chr1_1:29484402-29484421 | Msa0017660:CDS | 50.0% | |
| GTTCTCTGTTGGGTCATGAG+GGG | + | chr1_1:29484430-29484449 | None:intergenic | 50.0% | |
| CAGTTCTCTGTTGGGTCATG+AGG | + | chr1_1:29484432-29484451 | None:intergenic | 50.0% | |
| TTCAGATTGCTGAGTGGGGA+AGG | - | chr1_1:29484625-29484644 | Msa0017660:CDS | 50.0% | |
| ! | TGCACCGACGAAGCTGAATT+TGG | + | chr1_1:29484787-29484806 | None:intergenic | 50.0% |
| ! | GTCGGTGCATTTGATGATCC+TGG | - | chr1_1:29484798-29484817 | Msa0017660:intron | 50.0% |
| TTGTAGCGTCCTCTTCCGTA+TGG | + | chr1_1:29484825-29484844 | None:intergenic | 50.0% | |
| AGGACGCTACAACCCAAACA+TGG | - | chr1_1:29484833-29484852 | Msa0017660:intron | 50.0% | |
| TGACTAGAGGGGCCATGTTT+GGG | + | chr1_1:29484848-29484867 | None:intergenic | 50.0% | |
| TTGACTAGAGGGGCCATGTT+TGG | + | chr1_1:29484849-29484868 | None:intergenic | 50.0% | |
| CAAGCTTGCCGTCCATATTG+TGG | - | chr1_1:29484914-29484933 | Msa0017660:intron | 50.0% | |
| TGCTCGTCGACATAACAAGC+CGG | + | chr1_1:29484981-29485000 | None:intergenic | 50.0% | |
| CCCCGCTTGAATGGTTAACA+TGG | + | chr1_1:29485015-29485034 | None:intergenic | 50.0% | |
| GGAGCATAACTTGGGTGGAT+TGG | - | chr1_1:29485051-29485070 | Msa0017660:intron | 50.0% | |
| !! | ACTTGGGTGGATTGGTCTAG+AGG | - | chr1_1:29485059-29485078 | Msa0017660:intron | 50.0% |
| TGGCATGGTGATTGCCTCAT+TGG | - | chr1_1:29485362-29485381 | Msa0017660:intron | 50.0% | |
| CCAGCACGTTCTTCAACGCA+TGG | + | chr1_1:29479432-29479451 | None:intergenic | 55.0% | |
| CCATGCGTTGAAGAACGTGC+TGG | - | chr1_1:29479429-29479448 | Msa0017660:intron | 55.0% | |
| CTCTCCCAAACAGGTGCAAG+AGG | + | chr1_1:29479609-29479628 | None:intergenic | 55.0% | |
| CTCTTGCACCTGTTTGGGAG+AGG | - | chr1_1:29479607-29479626 | Msa0017660:intron | 55.0% | |
| GTGGGGGGTAACAGCCTAAA+TGG | - | chr1_1:29480666-29480685 | Msa0017660:intron | 55.0% | |
| TTCGGATTTGGCCGCGAGTT+AGG | - | chr1_1:29480752-29480771 | Msa0017660:intron | 55.0% | |
| !! | TTCCCATTGAAGAGTGCCCC+CGG | - | chr1_1:29481923-29481942 | Msa0017660:intron | 55.0% |
| TGGGAGATGCTAACGAGTGC+CGG | + | chr1_1:29481945-29481964 | None:intergenic | 55.0% | |
| CTCAGCTAAAAGCTGCCGAC+AGG | + | chr1_1:29481991-29482010 | None:intergenic | 55.0% | |
| GGGGGCTTCCTGTTTGATGT+AGG | + | chr1_1:29482044-29482063 | None:intergenic | 55.0% | |
| GGTCTTGCTAATGAGTGCCC+CGG | - | chr1_1:29482455-29482474 | Msa0017660:intron | 55.0% | |
| GTCTTGCTAATGAGTGCCCC+GGG | - | chr1_1:29482456-29482475 | Msa0017660:intron | 55.0% | |
| !! | AAGGCCCTTAAAGAGTGCCC+CGG | - | chr1_1:29482583-29482602 | Msa0017660:intron | 55.0% |
| AATGCTAACAAGTGCCCCCG+GGG | + | chr1_1:29482603-29482622 | None:intergenic | 55.0% | |
| GTTTCTTGCTGCAGAGCTGC+TGG | - | chr1_1:29483296-29483315 | Msa0017660:intron | 55.0% | |
| !!! | CCTCCTTGGCATTTTGGGGT+CGG | - | chr1_1:29483510-29483529 | Msa0017660:intron | 55.0% |
| GATCCTGGTCCATACGGAAG+AGG | - | chr1_1:29484813-29484832 | Msa0017660:intron | 55.0% | |
| CAACACACTCCCCGCTTGAA+TGG | + | chr1_1:29485024-29485043 | None:intergenic | 55.0% | |
| ! | CATTCAAGCGGGGAGTGTGT+TGG | - | chr1_1:29485022-29485041 | Msa0017660:intron | 55.0% |
| ! | CGGGGAGTGTGTTGGCAAAT+CGG | - | chr1_1:29485030-29485049 | Msa0017660:intron | 55.0% |
| !! | TGGGTGGATTGGTCTAGAGG+TGG | - | chr1_1:29485062-29485081 | Msa0017660:intron | 55.0% |
| !! | GGGTGGATTGGTCTAGAGGT+GGG | - | chr1_1:29485063-29485082 | Msa0017660:intron | 55.0% |
| !! | GGTGGATTGGTCTAGAGGTG+GGG | - | chr1_1:29485064-29485083 | Msa0017660:intron | 55.0% |
| TCGTGCACACGAGCATAGGG+TGG | + | chr1_1:29478516-29478535 | None:intergenic | 60.0% | |
| GGTCTTGCTAACGAGTGCCC+CGG | - | chr1_1:29481838-29481857 | Msa0017660:intron | 60.0% | |
| GTCTTGCTAACGAGTGCCCC+GGG | - | chr1_1:29481839-29481858 | Msa0017660:intron | 60.0% | |
| GAGTGCCCCGGGACACTTTA+AGG | - | chr1_1:29481850-29481869 | Msa0017660:intron | 60.0% | |
| !! | TGCCGGGGGCACTCTTCAAT+GGG | + | chr1_1:29481928-29481947 | None:intergenic | 60.0% |
| !! | GAGATGCTAACGAGTGCCGG+GGG | + | chr1_1:29481942-29481961 | None:intergenic | 60.0% |
| ! | GGAGATGCTAACGAGTGCCG+GGG | + | chr1_1:29481943-29481962 | None:intergenic | 60.0% |
| GGGAGATGCTAACGAGTGCC+GGG | + | chr1_1:29481944-29481963 | None:intergenic | 60.0% | |
| GTGCCCCGGGACACTCTTTA+AGG | - | chr1_1:29482469-29482488 | Msa0017660:intron | 60.0% | |
| !! | AGGCCCTTAAAGAGTGCCCC+GGG | - | chr1_1:29482584-29482603 | Msa0017660:intron | 60.0% |
| !! | GGAGAACTCCCCGACTTGGT+TGG | - | chr1_1:29482641-29482660 | Msa0017660:intron | 60.0% |
| CCGACCCCAAAATGCCAAGG+AGG | + | chr1_1:29483513-29483532 | None:intergenic | 60.0% | |
| TGGCCGACCCCAAAATGCCA+AGG | + | chr1_1:29483516-29483535 | None:intergenic | 60.0% | |
| GGGGAACCCAGGGATCATCA+CGG | + | chr1_1:29484411-29484430 | None:intergenic | 60.0% | |
| TGGGTCATGAGGGGAACCCA+GGG | + | chr1_1:29484421-29484440 | None:intergenic | 60.0% | |
| TTGGGTCATGAGGGGAACCC+AGG | + | chr1_1:29484422-29484441 | None:intergenic | 60.0% | |
| CGTCCTCTTCCGTATGGACC+AGG | + | chr1_1:29484819-29484838 | None:intergenic | 60.0% | |
| GGGGCCCATCCAGCTACATT+TGG | - | chr1_1:29485083-29485102 | Msa0017660:intron | 60.0% | |
| !! | GTGCCGGGGGCACTCTTCAA+TGG | + | chr1_1:29481929-29481948 | None:intergenic | 65.0% |
| !! | GGCCCTTAAAGAGTGCCCCG+GGG | - | chr1_1:29482585-29482604 | Msa0017660:intron | 65.0% |
| !! | GCCCTTAAAGAGTGCCCCGG+GGG | - | chr1_1:29482586-29482605 | Msa0017660:intron | 65.0% |
| ! | GCCCCCGGGGCACTCTTTAA+GGG | + | chr1_1:29482590-29482609 | None:intergenic | 65.0% |
| ! | TGCCCCCGGGGCACTCTTTA+AGG | + | chr1_1:29482591-29482610 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 29478424 | 29485505 | 29478424 | ID=Msa0017660;Name=Msa0017660 |
| chr1_1 | mRNA | 29478424 | 29485505 | 29478424 | ID=Msa0017660-mRNA-1;Parent=Msa0017660;Name=Msa0017660-mRNA-1;_AED=0.13;_eAED=0.13;_QI=86|1|1|1|0.5|0.33|3|234|376 |
| chr1_1 | exon | 29478424 | 29479299 | 29478424 | ID=Msa0017660-mRNA-1:exon:9843;Parent=Msa0017660-mRNA-1 |
| chr1_1 | exon | 29484189 | 29484681 | 29484189 | ID=Msa0017660-mRNA-1:exon:9842;Parent=Msa0017660-mRNA-1 |
| chr1_1 | exon | 29485424 | 29485505 | 29485424 | ID=Msa0017660-mRNA-1:exon:9841;Parent=Msa0017660-mRNA-1 |
| chr1_1 | five_prime_UTR | 29485424 | 29485505 | 29485424 | ID=Msa0017660-mRNA-1:five_prime_utr;Parent=Msa0017660-mRNA-1 |
| chr1_1 | five_prime_UTR | 29484678 | 29484681 | 29484678 | ID=Msa0017660-mRNA-1:five_prime_utr;Parent=Msa0017660-mRNA-1 |
| chr1_1 | CDS | 29484189 | 29484677 | 29484189 | ID=Msa0017660-mRNA-1:cds;Parent=Msa0017660-mRNA-1 |
| chr1_1 | CDS | 29478658 | 29479299 | 29478658 | ID=Msa0017660-mRNA-1:cds;Parent=Msa0017660-mRNA-1 |
| chr1_1 | three_prime_UTR | 29478424 | 29478657 | 29478424 | ID=Msa0017660-mRNA-1:three_prime_utr;Parent=Msa0017660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
