AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1307180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307180 MtrunA17_Chr8g0346311 88.732 142 7 1 1 133 1 142 3.53e-90 258
Msa1307180 MtrunA17_Chr3g0127451 51.471 136 54 2 1 127 1 133 6.64e-46 145
Msa1307180 MtrunA17_Chr7g0276081 55.714 140 52 2 3 133 4 142 1.78e-45 144
Msa1307180 MtrunA17_Chr4g0010061 44.928 138 64 3 1 129 14 148 4.79e-41 133
Msa1307180 MtrunA17_Chr5g0419651 54.444 90 31 2 1 81 1 89 5.26e-28 99.8
Msa1307180 MtrunA17_Chr3g0134591 30.000 140 78 3 3 127 2 136 6.81e-20 79.7
Msa1307180 MtrunA17_Chr3g0115151 31.852 135 62 3 1 106 457 590 4.55e-15 70.5
Msa1307180 MtrunA17_Chr3g0115131 46.053 76 31 2 5 71 516 590 2.13e-14 68.6
Msa1307180 MtrunA17_Chr5g0424491 41.463 82 38 2 1 73 513 593 2.61e-13 65.5
Msa1307180 MtrunA17_Chr6g0486891 37.681 69 35 1 12 72 50 118 4.02e-13 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307180 AT5G53560.1 48.529 136 58 3 1 127 1 133 5.94e-45 143
Msa1307180 AT5G48810.1 48.889 135 59 2 1 126 1 134 1.37e-43 140
Msa1307180 AT2G32720.1 49.630 135 56 3 1 126 1 132 1.53e-42 137
Msa1307180 AT2G32720.2 50.000 114 45 3 22 126 22 132 1.63e-30 107
Msa1307180 AT2G46650.1 46.154 130 58 3 8 127 5 132 1.09e-28 102
Msa1307180 AT1G26340.1 46.512 86 37 1 1 77 1 86 2.88e-26 96.3
Msa1307180 AT1G37130.1 41.250 80 37 2 1 71 538 616 1.25e-14 69.7
Msa1307180 AT1G60660.1 41.176 68 32 1 12 71 53 120 1.54e-14 65.5
Msa1307180 AT1G77760.1 40.000 80 38 2 1 71 541 619 2.73e-13 65.9

Find 33 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTTGCTCTTCAGTACTA+TGG 0.296249 8_4:-2556999 Msa1307180:CDS
CCTGGTGCCGTTGCTGATAT+TGG 0.324237 8_4:-2557027 Msa1307180:CDS
ATTCATTACTTAAGATTCAT+TGG 0.334499 8_4:+2556962 None:intergenic
AGAAGATTGATTGCTGCTTA+TGG 0.334533 8_4:+2557076 None:intergenic
ATCAGAGACTTTAACCTTTG+AGG 0.335279 8_4:-2561314 Msa1307180:CDS
GACTTTAACCTTTGAGGATG+TGG 0.376866 8_4:-2561308 Msa1307180:CDS
ATAAGCAGCAATCAATCTTC+TGG 0.400727 8_4:-2557074 Msa1307180:CDS
TGATGGAAAAGTACTATGTC+GGG 0.401001 8_4:-2557166 Msa1307180:CDS
CTGGTGCCGTTGCTGATATT+GGG 0.414415 8_4:-2557026 Msa1307180:CDS
CTTATGGTAGATGCTTGAAT+TGG 0.417094 8_4:+2557092 None:intergenic
GATGCTTGAATTGGTGCTGT+TGG 0.425349 8_4:+2557101 None:intergenic
CTGGATCATAGTCAACAAAA+AGG 0.426357 8_4:-2561260 Msa1307180:intron
GGATTGTTCTTAGCTGCTGC+TGG 0.435494 8_4:+2557122 None:intergenic
AATCTTGCAGTTGAAGAAGA+TGG 0.435798 8_4:-2561344 Msa1307180:intron
TAAGTAATGAATTTGAACTT+TGG 0.441457 8_4:-2556951 Msa1307180:three_prime_UTR
GTGGCCAACATCTTCAAAAT+CGG 0.455103 8_4:+2557208 None:intergenic
CGCAATCTAGCATGAATAAG+AGG 0.472461 8_4:+2556784 None:intergenic
ACAATAACAAGAACGATTGC+TGG 0.477730 8_4:-2561279 Msa1307180:CDS
GTTGAAGTTCTTGCAGTACC+TGG 0.488377 8_4:-2557045 Msa1307180:CDS
TAATAATCTATATCAACATA+AGG 0.507284 8_4:-2556887 Msa1307180:three_prime_UTR
CCAATATCAGCAACGGCACC+AGG 0.516481 8_4:+2557027 None:intergenic
ATCTTGCAGTTGAAGAAGAT+GGG 0.518015 8_4:-2561343 Msa1307180:intron
TGACTCGGCAACAGAGATGA+TGG 0.533371 8_4:-2557183 Msa1307180:CDS
ATGATGGAAAAGTACTATGT+CGG 0.538408 8_4:-2557167 Msa1307180:CDS
AGCTGCTGCTGGAAGAGTGT+TGG 0.552849 8_4:+2557133 None:intergenic
GAGATATTATATCAGAGTCA+TGG 0.553803 8_4:+2556760 None:intergenic
GTGCTTAGCCACATCCTCAA+AGG 0.580670 8_4:+2561300 None:intergenic
AGATGTTGGCCACAGTGACT+CGG 0.590642 8_4:-2557198 Msa1307180:CDS
GCCAACATCTTCAAAATCGG+TGG 0.624406 8_4:+2557211 None:intergenic
GCAGATCCCAATATCAGCAA+CGG 0.642745 8_4:+2557020 None:intergenic
GATGGAAAAGTACTATGTCG+GGG 0.689368 8_4:-2557165 Msa1307180:CDS
TCTCTGTTGCCGAGTCACTG+TGG 0.717695 8_4:+2557189 None:intergenic
GGAAAAGTACTATGTCGGGG+AGG 0.724893 8_4:-2557162 Msa1307180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAATATATTTTATTTT+GGG + chr8_4:2559374-2559393 None:intergenic 0.0%
!!! ATATTAAATATATTTTATTT+TGG + chr8_4:2559375-2559394 None:intergenic 0.0%
!!! AAAATCTGATTAATTTTTTT+TGG - chr8_4:2556738-2556757 Msa1307180:three_prime_UTR 10.0%
!!! AAATCTGATTAATTTTTTTT+GGG - chr8_4:2556739-2556758 Msa1307180:three_prime_UTR 10.0%
!! TATTGTAGTTAAAAAAAAAT+TGG - chr8_4:2558120-2558139 Msa1307180:intron 10.0%
!! ATTGTAGTTAAAAAAAAATT+GGG - chr8_4:2558121-2558140 Msa1307180:intron 10.0%
!!! ACTGTTTTTTTTTTTTTTTT+GGG + chr8_4:2559304-2559323 None:intergenic 10.0%
!!! TACTGTTTTTTTTTTTTTTT+TGG + chr8_4:2559305-2559324 None:intergenic 10.0%
!! AAGTAATGAAATTTATATTT+AGG - chr8_4:2560193-2560212 Msa1307180:intron 10.0%
!! AAAAACTAAATTGGAATAAA+AGG + chr8_4:2557488-2557507 None:intergenic 15.0%
!!! ATAAATTTATACTCTTTTTG+AGG + chr8_4:2557801-2557820 None:intergenic 15.0%
!! TTGTAGTTAAAAAAAAATTG+GGG - chr8_4:2558122-2558141 Msa1307180:intron 15.0%
!!! AATATGTTTTGATAATTAGA+CGG + chr8_4:2558328-2558347 None:intergenic 15.0%
!!! TTTTTTAAACATAAGTATTG+TGG - chr8_4:2558687-2558706 Msa1307180:intron 15.0%
!! TTTAAATTAGTAAACTCTTA+TGG - chr8_4:2558806-2558825 Msa1307180:intron 15.0%
!! TTAAATTAGTAAACTCTTAT+GGG - chr8_4:2558807-2558826 Msa1307180:intron 15.0%
!!! TTTCTGTTTTTTTTCTTTTT+CGG - chr8_4:2559467-2559486 Msa1307180:intron 15.0%
!!! AGAGATTTTAAAAAGTAAAT+AGG + chr8_4:2559633-2559652 None:intergenic 15.0%
!! TATAAATTTATGTTGTTAGA+TGG - chr8_4:2560134-2560153 Msa1307180:intron 15.0%
!! TAATAATCTATATCAACATA+AGG - chr8_4:2561299-2561318 Msa1307180:CDS 15.0%
!!! ATATCTCAAATATTTTGAAA+TGG - chr8_4:2561442-2561461 Msa1307180:intron 15.0%
!!! ATTTTAAGAACTGAAAATGA+AGG + chr8_4:2556723-2556742 None:intergenic 20.0%
!!! TTATGTTATTGTCTAGTTTT+TGG - chr8_4:2557276-2557295 Msa1307180:intron 20.0%
!! TAAATTGGAATAAAAGGTTA+TGG + chr8_4:2557482-2557501 None:intergenic 20.0%
!!! TTTTTCAATTTTTTTTGGCT+TGG - chr8_4:2557512-2557531 Msa1307180:intron 20.0%
!!! TTTTAAACTTTCTCGATTTT+GGG + chr8_4:2557648-2557667 None:intergenic 20.0%
!!! TTTTTAAACTTTCTCGATTT+TGG + chr8_4:2557649-2557668 None:intergenic 20.0%
!! TAAACATTCAATCTCTTATT+GGG + chr8_4:2557759-2557778 None:intergenic 20.0%
!! TTAAACATTCAATCTCTTAT+TGG + chr8_4:2557760-2557779 None:intergenic 20.0%
!! TGTAGTTAAAAAAAAATTGG+GGG - chr8_4:2558123-2558142 Msa1307180:intron 20.0%
!! ACAATATTAAAGCAAAATGT+TGG + chr8_4:2558150-2558169 None:intergenic 20.0%
!!! TTTTGCTTTAATATTGTATG+TGG - chr8_4:2558153-2558172 Msa1307180:intron 20.0%
!!! GCATCTAATTTTATACTAAT+TGG - chr8_4:2558175-2558194 Msa1307180:intron 20.0%
!!! TTTAACTTGTTTGCATTAAA+AGG - chr8_4:2558198-2558217 Msa1307180:intron 20.0%
!!! TTTGAATTTGCTGTAAAAAT+TGG - chr8_4:2558247-2558266 Msa1307180:intron 20.0%
!! AAAAATTGGATAAAGTTACA+TGG - chr8_4:2558261-2558280 Msa1307180:intron 20.0%
!! AATGATGAGAGAAAAAAAAA+AGG + chr8_4:2558373-2558392 None:intergenic 20.0%
!! AAAAAAAAAACAGAAAGACA+TGG - chr8_4:2559222-2559241 Msa1307180:intron 20.0%
!! AAAAAAAAACAGTAGAATTG+TGG - chr8_4:2559311-2559330 Msa1307180:intron 20.0%
!! AAAAAAAACAGTAGAATTGT+GGG - chr8_4:2559312-2559331 Msa1307180:intron 20.0%
!!! TTCTGTTTTTTTTCTTTTTC+GGG - chr8_4:2559468-2559487 Msa1307180:intron 20.0%
!!! TACTTTTTAAAATCTCTTAG+AGG - chr8_4:2559636-2559655 Msa1307180:intron 20.0%
!! TATTTATTAGTAGCAATGTA+GGG + chr8_4:2559809-2559828 None:intergenic 20.0%
!! TTATTTATTAGTAGCAATGT+AGG + chr8_4:2559810-2559829 None:intergenic 20.0%
!!! ATTTCTCTCTAAGATTAAAA+TGG + chr8_4:2560059-2560078 None:intergenic 20.0%
!! GTATTCCTATGTTTATTATA+GGG + chr8_4:2560284-2560303 None:intergenic 20.0%
!! TGTATTCCTATGTTTATTAT+AGG + chr8_4:2560285-2560304 None:intergenic 20.0%
!!! TTTGTACTTTTGTTATTAGT+AGG - chr8_4:2560366-2560385 Msa1307180:intron 20.0%
!!! ATTTTTCACATGACTAAAAT+GGG + chr8_4:2560571-2560590 None:intergenic 20.0%
!!! GTTGTTATTTATTATTCTCA+GGG - chr8_4:2560746-2560765 Msa1307180:intron 20.0%
!! ATTCATTACTTAAGATTCAT+TGG + chr8_4:2561227-2561246 None:intergenic 20.0%
!! TAAGTAATGAATTTGAACTT+TGG - chr8_4:2561235-2561254 Msa1307180:intron 20.0%
! AGGAATATGAATATGATTCA+TGG - chr8_4:2557136-2557155 Msa1307180:CDS 25.0%
! TGAATATGATTCATGGTATT+AGG - chr8_4:2557143-2557162 Msa1307180:CDS 25.0%
! GAATATGATTCATGGTATTA+GGG - chr8_4:2557144-2557163 Msa1307180:CDS 25.0%
! TAGAATACACATTGAATTCA+GGG + chr8_4:2557322-2557341 None:intergenic 25.0%
! ATAGAATACACATTGAATTC+AGG + chr8_4:2557323-2557342 None:intergenic 25.0%
!! TGATCTGTCAATAATTTGTA+TGG - chr8_4:2557379-2557398 Msa1307180:intron 25.0%
!! ATGTAGTCATTCTAATTTGT+AGG + chr8_4:2557597-2557616 None:intergenic 25.0%
! TTAATACTCACTCTCTAATT+GGG - chr8_4:2557694-2557713 Msa1307180:intron 25.0%
!! TTAAATCAATGTGAAGTGTT+GGG - chr8_4:2557717-2557736 Msa1307180:intron 25.0%
!!! GAAATTAGATGGATTTTTGA+AGG + chr8_4:2557843-2557862 None:intergenic 25.0%
! ATGATGCAAAAAAACTGTAA+TGG + chr8_4:2557877-2557896 None:intergenic 25.0%
! TTAGACTCTATTTATATCAG+TGG + chr8_4:2558227-2558246 None:intergenic 25.0%
!!! TAAAGTTACATGGTTTTAGA+AGG - chr8_4:2558271-2558290 Msa1307180:intron 25.0%
! CATATTCATACTGTGAAAAT+TGG - chr8_4:2558342-2558361 Msa1307180:intron 25.0%
! CACTAAAAGTTAAAAATCCA+TGG + chr8_4:2558591-2558610 None:intergenic 25.0%
! ATCAATGAAACTATAATGCT+AGG - chr8_4:2558643-2558662 Msa1307180:intron 25.0%
! AAATATCCAACATTCTAACT+TGG + chr8_4:2558725-2558744 None:intergenic 25.0%
! AATTTGCAAAGATTTAACCA+GGG + chr8_4:2559014-2559033 None:intergenic 25.0%
! AGAAAAAAAACAGAAAGACA+CGG + chr8_4:2559463-2559482 None:intergenic 25.0%
!!! TTTTTAAAATCTCTTAGAGG+AGG - chr8_4:2559639-2559658 Msa1307180:intron 25.0%
! AGTATTTCATATTACTCAGT+GGG - chr8_4:2559755-2559774 Msa1307180:intron 25.0%
! TTCTTAAACGAAATAATCAG+TGG + chr8_4:2559852-2559871 None:intergenic 25.0%
! GTATTTATCATGTTACTGAT+GGG + chr8_4:2559979-2559998 None:intergenic 25.0%
! TACTTTAAACAAACGCATTT+CGG + chr8_4:2560178-2560197 None:intergenic 25.0%
! ATTACAATGGAATACAAGTT+AGG + chr8_4:2560417-2560436 None:intergenic 25.0%
! AACTTGTATTCCATTGTAAT+AGG - chr8_4:2560417-2560436 Msa1307180:intron 25.0%
! ACATCATATACCTATTACAA+TGG + chr8_4:2560430-2560449 None:intergenic 25.0%
!! CATTTTTCACATGACTAAAA+TGG + chr8_4:2560572-2560591 None:intergenic 25.0%
!!! CATTTTAGTCATGTGAAAAA+TGG - chr8_4:2560570-2560589 Msa1307180:intron 25.0%
!!! CTGTCTCAAATTATTTTTCT+CGG - chr8_4:2560714-2560733 Msa1307180:intron 25.0%
!!! CGTTGTTATTTATTATTCTC+AGG - chr8_4:2560745-2560764 Msa1307180:intron 25.0%
!!! TGTGTTTTATTATCATGTAG+AGG - chr8_4:2561353-2561372 Msa1307180:intron 25.0%
!!! GTGTTTTATTATCATGTAGA+GGG - chr8_4:2561354-2561373 Msa1307180:intron 25.0%
!! TTTGTGTTCTTGATTTTCTA+TGG - chr8_4:2561379-2561398 Msa1307180:intron 25.0%
ACTGAGAATGATTGTGATAT+AGG - chr8_4:2557116-2557135 Msa1307180:CDS 30.0%
CATTAGATCATGTCATGATA+TGG + chr8_4:2557438-2557457 None:intergenic 30.0%
! TCTAATTTGTAGGAAGATCA+AGG + chr8_4:2557587-2557606 None:intergenic 30.0%
GTTAATACTCACTCTCTAAT+TGG - chr8_4:2557693-2557712 Msa1307180:intron 30.0%
GTTAAATCAATGTGAAGTGT+TGG - chr8_4:2557716-2557735 Msa1307180:intron 30.0%
!! ATGGATTTTTGAAGGAAATG+AGG + chr8_4:2557835-2557854 None:intergenic 30.0%
TTAACATCACGGAAATTAGA+TGG + chr8_4:2557854-2557873 None:intergenic 30.0%
AACTGTAATGGTTAACATCA+CGG + chr8_4:2557865-2557884 None:intergenic 30.0%
! TGCATACATATTAAGAGTGT+CGG + chr8_4:2557992-2558011 None:intergenic 30.0%
!! TTTCTCTCATCATTTTGACA+TGG - chr8_4:2558379-2558398 Msa1307180:intron 30.0%
! TATATTTTGCACAGTTGCAA+AGG + chr8_4:2558408-2558427 None:intergenic 30.0%
AATTGCTAAAGAGTGAAGAA+CGG + chr8_4:2558542-2558561 None:intergenic 30.0%
TCATTACCAAGTTAGAATGT+TGG - chr8_4:2558716-2558735 Msa1307180:intron 30.0%
! AGTGTTGAAAACATCTACAA+TGG + chr8_4:2558777-2558796 None:intergenic 30.0%
ATGATTAATCTAGTAACAGC+TGG + chr8_4:2558924-2558943 None:intergenic 30.0%
GAATTTGCAAAGATTTAACC+AGG + chr8_4:2559015-2559034 None:intergenic 30.0%
GAGTATTTCATATTACTCAG+TGG - chr8_4:2559754-2559773 Msa1307180:intron 30.0%
GTATTTCATATTACTCAGTG+GGG - chr8_4:2559756-2559775 Msa1307180:intron 30.0%
TATTTCATATTACTCAGTGG+GGG - chr8_4:2559757-2559776 Msa1307180:intron 30.0%
CGTATTTATCATGTTACTGA+TGG + chr8_4:2559980-2559999 None:intergenic 30.0%
AATACGATCTTTCATATGAG+TGG - chr8_4:2559994-2560013 Msa1307180:intron 30.0%
GAGAAATATGAACTCATCAT+TGG - chr8_4:2560072-2560091 Msa1307180:intron 30.0%
TTAGATGGCATAAACTACAT+TGG - chr8_4:2560149-2560168 Msa1307180:intron 30.0%
TAGCACCCTATAATAAACAT+AGG - chr8_4:2560276-2560295 Msa1307180:intron 30.0%
ACACATTCACATGAATGAAT+GGG + chr8_4:2560317-2560336 None:intergenic 30.0%
AACACATTCACATGAATGAA+TGG + chr8_4:2560318-2560337 None:intergenic 30.0%
! ATATGATGTTACCCCATTTT+TGG - chr8_4:2560441-2560460 Msa1307180:intron 30.0%
! TCATGTCTTTAAAGAAGGTA+GGG - chr8_4:2560685-2560704 Msa1307180:intron 30.0%
TGAGTTGCTGAAAAAAACTA+CGG + chr8_4:2560785-2560804 None:intergenic 30.0%
! TTTTCTTGCTCTCTTCTTAT+AGG + chr8_4:2560877-2560896 None:intergenic 30.0%
ACATTCAACTAACAATCTTC+TGG - chr8_4:2560928-2560947 Msa1307180:intron 30.0%
!! ATGATGGAAAAGTACTATGT+CGG - chr8_4:2561019-2561038 Msa1307180:intron 30.0%
GAGATATTATATCAGAGTCA+TGG + chr8_4:2561429-2561448 None:intergenic 30.0%
!! TACAAGATTTTGACAGAGGT+TGG + chr8_4:2556673-2556692 None:intergenic 35.0%
!! TGCTTACAAGATTTTGACAG+AGG + chr8_4:2556677-2556696 None:intergenic 35.0%
AATCTTGCAGTTGAAGAAGA+TGG - chr8_4:2556842-2556861 Msa1307180:three_prime_UTR 35.0%
ATCTTGCAGTTGAAGAAGAT+GGG - chr8_4:2556843-2556862 Msa1307180:three_prime_UTR 35.0%
ATCAGAGACTTTAACCTTTG+AGG - chr8_4:2556872-2556891 Msa1307180:three_prime_UTR 35.0%
ACAATAACAAGAACGATTGC+TGG - chr8_4:2556907-2556926 Msa1307180:three_prime_UTR 35.0%
CTGGATCATAGTCAACAAAA+AGG - chr8_4:2556926-2556945 Msa1307180:three_prime_UTR 35.0%
!!! GGTATTAGGGTTTTAAACTG+CGG - chr8_4:2557157-2557176 Msa1307180:CDS 35.0%
GACAGATCAAAATACTCTTG+TGG + chr8_4:2557368-2557387 None:intergenic 35.0%
CACTCTTAATATGTATGCAG+TGG - chr8_4:2557993-2558012 Msa1307180:intron 35.0%
TAATATGTATGCAGTGGTGT+TGG - chr8_4:2557999-2558018 Msa1307180:intron 35.0%
!! ATCACATTCTCAGCTTGTTA+TGG - chr8_4:2558435-2558454 Msa1307180:intron 35.0%
!! TCACATTCTCAGCTTGTTAT+GGG - chr8_4:2558436-2558455 Msa1307180:intron 35.0%
AGATTCAACTTGGTAGAGTT+AGG + chr8_4:2558492-2558511 None:intergenic 35.0%
CAATGAAGCTAGATTCAACT+TGG + chr8_4:2558502-2558521 None:intergenic 35.0%
GGACAAATTGACAAATCACA+AGG + chr8_4:2558570-2558589 None:intergenic 35.0%
! GTGATTTGTCAATTTGTCCA+TGG - chr8_4:2558571-2558590 Msa1307180:intron 35.0%
! CTATAATGCTAGGTCTTTTC+TGG - chr8_4:2558653-2558672 Msa1307180:intron 35.0%
!! TTGAGTTGATAACCTTGCTT+TGG - chr8_4:2558864-2558883 Msa1307180:intron 35.0%
AGATTAGATTCTCCAAAGCA+AGG + chr8_4:2558879-2558898 None:intergenic 35.0%
GAAGACTTTGCTACTCTAAA+CGG + chr8_4:2558986-2559005 None:intergenic 35.0%
! GCTGATTATGAAGATTGGTT+TGG + chr8_4:2559086-2559105 None:intergenic 35.0%
TTTCAAAACGACTGCTATGT+AGG - chr8_4:2559339-2559358 Msa1307180:intron 35.0%
!!! AGTTTTGAGATGAGAAAGCA+AGG + chr8_4:2559565-2559584 None:intergenic 35.0%
GAGTAATATGAAATACTCCG+TGG + chr8_4:2559752-2559771 None:intergenic 35.0%
TTCGTTTAAGAACTAGCATC+AGG - chr8_4:2559860-2559879 Msa1307180:intron 35.0%
! GAACTCATCATTGGTTACTT+CGG - chr8_4:2560081-2560100 Msa1307180:intron 35.0%
TATTTAGGAATAACTTCCCC+AGG - chr8_4:2560208-2560227 Msa1307180:intron 35.0%
ATTTCCATCATTGCTTTCCT+GGG + chr8_4:2560228-2560247 None:intergenic 35.0%
AATTTCCATCATTGCTTTCC+TGG + chr8_4:2560229-2560248 None:intergenic 35.0%
!! GTCTCGGTTTATTTTTCTCA+GGG + chr8_4:2560636-2560655 None:intergenic 35.0%
!! TGTCTCGGTTTATTTTTCTC+AGG + chr8_4:2560637-2560656 None:intergenic 35.0%
! TTGCCTCATGTCTTTAAAGA+AGG - chr8_4:2560680-2560699 Msa1307180:intron 35.0%
! CTACCTTCTTTAAAGACATG+AGG + chr8_4:2560686-2560705 None:intergenic 35.0%
! CTCATGTCTTTAAAGAAGGT+AGG - chr8_4:2560684-2560703 Msa1307180:intron 35.0%
! CATGTCTTTAAAGAAGGTAG+GGG - chr8_4:2560686-2560705 Msa1307180:intron 35.0%
GAGTTGCTGAAAAAAACTAC+GGG + chr8_4:2560784-2560803 None:intergenic 35.0%
! AATCTTCTGGTGTTTTACAC+AGG - chr8_4:2560941-2560960 Msa1307180:intron 35.0%
! ATCTTCTGGTGTTTTACACA+GGG - chr8_4:2560942-2560961 Msa1307180:intron 35.0%
!! TGATGGAAAAGTACTATGTC+GGG - chr8_4:2561020-2561039 Msa1307180:intron 35.0%
CTTATGGTAGATGCTTGAAT+TGG + chr8_4:2561097-2561116 None:intergenic 35.0%
! AGAAGATTGATTGCTGCTTA+TGG + chr8_4:2561113-2561132 None:intergenic 35.0%
ATAAGCAGCAATCAATCTTC+TGG - chr8_4:2561112-2561131 Msa1307180:intron 35.0%
!!! GGCTATAGTTTTAGACTCTT+TGG - chr8_4:2561256-2561275 Msa1307180:intron 35.0%
! ACATAAGGCAGTGTTCTTTT+TGG - chr8_4:2561314-2561333 Msa1307180:CDS 35.0%
! GACTTTAACCTTTGAGGATG+TGG - chr8_4:2556878-2556897 Msa1307180:three_prime_UTR 40.0%
! CAAAATACTCTTGTGGACTG+TGG + chr8_4:2557361-2557380 None:intergenic 40.0%
!! AGTATTAACGAGAGTGTTGC+TGG + chr8_4:2557682-2557701 None:intergenic 40.0%
!! TGAAGTGTTGGGACATACAT+TGG - chr8_4:2557728-2557747 Msa1307180:intron 40.0%
ACAGGGGGTTAATAGACATT+TGG + chr8_4:2557911-2557930 None:intergenic 40.0%
TATTAACCCCCTGTTATGAG+AGG - chr8_4:2557917-2557936 Msa1307180:intron 40.0%
TTCCTTACCTCTCATAACAG+GGG + chr8_4:2557927-2557946 None:intergenic 40.0%
GTTCCTTACCTCTCATAACA+GGG + chr8_4:2557928-2557947 None:intergenic 40.0%
AGTTCCTTACCTCTCATAAC+AGG + chr8_4:2557929-2557948 None:intergenic 40.0%
AGGTAAGGAACTATGATGCA+CGG - chr8_4:2557937-2557956 Msa1307180:intron 40.0%
!!! GTGAGGATAATGGGAGTTTT+AGG - chr8_4:2558089-2558108 Msa1307180:intron 40.0%
!!! TAATGGGAGTTTTAGGCACA+AGG - chr8_4:2558096-2558115 Msa1307180:intron 40.0%
GACTTTAGACGCTAGAATAC+TGG + chr8_4:2558954-2558973 None:intergenic 40.0%
AGCCATGTTCACTGAAGTAA+CGG - chr8_4:2559058-2559077 Msa1307180:intron 40.0%
TTCCGTTACTTCAGTGAACA+TGG + chr8_4:2559063-2559082 None:intergenic 40.0%
GTGCAGCTGATTATGAAGAT+TGG + chr8_4:2559091-2559110 None:intergenic 40.0%
GACTCTGCAAAGACACAATT+TGG - chr8_4:2559249-2559268 Msa1307180:intron 40.0%
AAAGACACAATTTGGCGACA+CGG - chr8_4:2559257-2559276 Msa1307180:intron 40.0%
AACGACTGCTATGTAGGATT+TGG - chr8_4:2559345-2559364 Msa1307180:intron 40.0%
TGCAATTTACTCTGAGCACT+TGG - chr8_4:2559666-2559685 Msa1307180:intron 40.0%
GCAATTTACTCTGAGCACTT+GGG - chr8_4:2559667-2559686 Msa1307180:intron 40.0%
CAATTTACTCTGAGCACTTG+GGG - chr8_4:2559668-2559687 Msa1307180:intron 40.0%
! AGACAGCAAACTTTAAGGGA+GGG + chr8_4:2559700-2559719 None:intergenic 40.0%
! TAGACAGCAAACTTTAAGGG+AGG + chr8_4:2559701-2559720 None:intergenic 40.0%
!! TCCCTTAAAGTTTGCTGTCT+AGG - chr8_4:2559700-2559719 Msa1307180:intron 40.0%
CCCTAGACAGCAAACTTTAA+GGG + chr8_4:2559704-2559723 None:intergenic 40.0%
!! CCCTTAAAGTTTGCTGTCTA+GGG - chr8_4:2559701-2559720 Msa1307180:intron 40.0%
!! CCTTAAAGTTTGCTGTCTAG+GGG - chr8_4:2559702-2559721 Msa1307180:intron 40.0%
!! CTTAAAGTTTGCTGTCTAGG+GGG - chr8_4:2559703-2559722 Msa1307180:intron 40.0%
CAAGCCACTGAAATATTCCA+CGG - chr8_4:2559732-2559751 Msa1307180:intron 40.0%
TACTCCGTGGAATATTTCAG+TGG + chr8_4:2559739-2559758 None:intergenic 40.0%
TAGTAGCAATGTAGGGACTT+GGG + chr8_4:2559802-2559821 None:intergenic 40.0%
TTAGTAGCAATGTAGGGACT+TGG + chr8_4:2559803-2559822 None:intergenic 40.0%
!! TTGGCTGGTTTATAGACCAA+CGG - chr8_4:2559938-2559957 Msa1307180:intron 40.0%
TTGGTTACTTCGGCAAACTT+CGG - chr8_4:2560091-2560110 Msa1307180:intron 40.0%
TTTCCATCATTGCTTTCCTG+GGG + chr8_4:2560227-2560246 None:intergenic 40.0%
GGGATGATCATCCAAAAATG+GGG + chr8_4:2560455-2560474 None:intergenic 40.0%
CGGGATGATCATCCAAAAAT+GGG + chr8_4:2560456-2560475 None:intergenic 40.0%
!! CCATTTTTGGATGATCATCC+CGG - chr8_4:2560454-2560473 Msa1307180:intron 40.0%
AGACATGAGGCAAAGTTGTT+CGG + chr8_4:2560673-2560692 None:intergenic 40.0%
CTTCTTATAGGCTATGACAG+AGG + chr8_4:2560865-2560884 None:intergenic 40.0%
!!! ACCACCGATTTTGAAGATGT+TGG - chr8_4:2560974-2560993 Msa1307180:intron 40.0%
GTGGCCAACATCTTCAAAAT+CGG + chr8_4:2560981-2561000 None:intergenic 40.0%
!! GATGGAAAAGTACTATGTCG+GGG - chr8_4:2561021-2561040 Msa1307180:intron 40.0%
GCATTTGCTCTTCAGTACTA+TGG - chr8_4:2561187-2561206 Msa1307180:intron 40.0%
CGCAATCTAGCATGAATAAG+AGG + chr8_4:2561405-2561424 None:intergenic 40.0%
TCCTTACCTCTCATAACAGG+GGG + chr8_4:2557926-2557945 None:intergenic 45.0%
TGTCTCCTTGTCTGTTGTGT+CGG - chr8_4:2558050-2558069 Msa1307180:intron 45.0%
TTATCCTCACCTGTCAAGCA+CGG + chr8_4:2558079-2558098 None:intergenic 45.0%
TGCTTGACAGGTGAGGATAA+TGG - chr8_4:2558079-2558098 Msa1307180:intron 45.0%
GCTTGACAGGTGAGGATAAT+GGG - chr8_4:2558080-2558099 Msa1307180:intron 45.0%
!! TCTCAGCTTGTTATGGGAGA+TGG - chr8_4:2558442-2558461 Msa1307180:intron 45.0%
!! ATGCTAGGTCTTTTCTGGTG+TGG - chr8_4:2558658-2558677 Msa1307180:intron 45.0%
ACTCTTATGGGTAGTGTCTG+CGG - chr8_4:2558819-2558838 Msa1307180:intron 45.0%
AGCAAAGTCTTCGATATCCC+TGG - chr8_4:2558994-2559013 Msa1307180:intron 45.0%
CCCCTAGACAGCAAACTTTA+AGG + chr8_4:2559705-2559724 None:intergenic 45.0%
CGTGGAATATTTCAGTGGCT+TGG + chr8_4:2559734-2559753 None:intergenic 45.0%
TATTACTCAGTGGGGGACTT+CGG - chr8_4:2559764-2559783 Msa1307180:intron 45.0%
TCAGTGGTAGAACTGCTTAG+TGG + chr8_4:2559836-2559855 None:intergenic 45.0%
CAACTGTGCACCTTCCAAAT+GGG - chr8_4:2559911-2559930 Msa1307180:intron 45.0%
TTCGGACAGGTCATGATATC+TGG - chr8_4:2560109-2560128 Msa1307180:intron 45.0%
GGGTGCTAGAAAATTCACTC+AGG + chr8_4:2560264-2560283 None:intergenic 45.0%
CCGGGATGATCATCCAAAAA+TGG + chr8_4:2560457-2560476 None:intergenic 45.0%
! TTTTTGGATGATCATCCCGG+AGG - chr8_4:2560457-2560476 Msa1307180:intron 45.0%
GAGGCTTTACTTTCTGCTAC+AGG - chr8_4:2560484-2560503 Msa1307180:intron 45.0%
GGGTAGGAACAAAGTTGTCT+CGG + chr8_4:2560652-2560671 None:intergenic 45.0%
GACATGAGGCAAAGTTGTTC+GGG + chr8_4:2560672-2560691 None:intergenic 45.0%
! TCTGGTGTTTTACACAGGGA+AGG - chr8_4:2560946-2560965 Msa1307180:intron 45.0%
GCCAACATCTTCAAAATCGG+TGG + chr8_4:2560978-2560997 None:intergenic 45.0%
!! GATGCTTGAATTGGTGCTGT+TGG + chr8_4:2561088-2561107 None:intergenic 45.0%
GTTGAAGTTCTTGCAGTACC+TGG - chr8_4:2561141-2561160 Msa1307180:intron 45.0%
GCAGATCCCAATATCAGCAA+CGG + chr8_4:2561169-2561188 None:intergenic 45.0%
!! AAAAAAAAAAAAAACTAAAT+TGG + chr8_4:2557497-2557516 None:intergenic 5.0%
!!! TTTTTTTTTTCAATTTTTTT+TGG - chr8_4:2557507-2557526 Msa1307180:intron 5.0%
GTGCTTAGCCACATCCTCAA+AGG + chr8_4:2556889-2556908 None:intergenic 50.0%
TGCGGTCTCAGTAACGATTG+TGG - chr8_4:2557175-2557194 Msa1307180:CDS 50.0%
TCACATCACGAGCGATCTGA+TGG - chr8_4:2557198-2557217 Msa1307180:CDS 50.0%
ACGTCGCGCAGTAATGATTG+TGG - chr8_4:2557412-2557431 Msa1307180:intron 50.0%
ACCCCCTGTTATGAGAGGTA+AGG - chr8_4:2557922-2557941 Msa1307180:intron 50.0%
ACGCGACACGCTTAATGCTA+AGG + chr8_4:2557966-2557985 None:intergenic 50.0%
GGAATCCGACACAACAGACA+AGG + chr8_4:2558058-2558077 None:intergenic 50.0%
AGAGTGAAGAACGGTGTGAC+TGG + chr8_4:2558533-2558552 None:intergenic 50.0%
GCTGCTTACAGGACAAGCTA+TGG + chr8_4:2559041-2559060 None:intergenic 50.0%
CAGTGAACATGGCTGCTTAC+AGG + chr8_4:2559052-2559071 None:intergenic 50.0%
TGAAGCACAGACACTGCTGT+TGG - chr8_4:2559118-2559137 Msa1307180:intron 50.0%
GCATCTGACACATGTCGTAC+CGG + chr8_4:2559178-2559197 None:intergenic 50.0%
GTACGACATGTGTCAGATGC+AGG - chr8_4:2559178-2559197 Msa1307180:intron 50.0%
GACACGTGTCTTTGCAGTGA+AGG + chr8_4:2559412-2559431 None:intergenic 50.0%
GACACTGCAAAGACACGGTT+TGG + chr8_4:2559436-2559455 None:intergenic 50.0%
GAAAGCAAGGACACTGCTGT+TGG + chr8_4:2559552-2559571 None:intergenic 50.0%
TTTACTCTGAGCACTTGGGG+AGG - chr8_4:2559671-2559690 Msa1307180:intron 50.0%
TTACTCTGAGCACTTGGGGA+GGG - chr8_4:2559672-2559691 Msa1307180:intron 50.0%
! CCATTTGGAAGGTGCACAGT+TGG + chr8_4:2559913-2559932 None:intergenic 50.0%
CCAACTGTGCACCTTCCAAA+TGG - chr8_4:2559910-2559929 Msa1307180:intron 50.0%
CACCTTCCAAATGGGTGGAT+TGG - chr8_4:2559919-2559938 Msa1307180:intron 50.0%
AGCCAATCCACCCATTTGGA+AGG + chr8_4:2559924-2559943 None:intergenic 50.0%
!! TTCCAAATGGGTGGATTGGC+TGG - chr8_4:2559923-2559942 Msa1307180:intron 50.0%
AACCAGCCAATCCACCCATT+TGG + chr8_4:2559928-2559947 None:intergenic 50.0%
TGTTACTGATGGGACCGAAG+AGG + chr8_4:2559969-2559988 None:intergenic 50.0%
TACTTCGGCAAACTTCGGAC+AGG - chr8_4:2560096-2560115 Msa1307180:intron 50.0%
CTTCCCCAGGAAAGCAATGA+TGG - chr8_4:2560221-2560240 Msa1307180:intron 50.0%
AAGTAAAGCCTCGTCACCTC+CGG + chr8_4:2560476-2560495 None:intergenic 50.0%
TGAGGCAAAGTTGTTCGGGT+AGG + chr8_4:2560668-2560687 None:intergenic 50.0%
AGATGTTGGCCACAGTGACT+CGG - chr8_4:2560988-2561007 Msa1307180:intron 50.0%
! TGACTCGGCAACAGAGATGA+TGG - chr8_4:2561003-2561022 Msa1307180:intron 50.0%
!! GGAAAAGTACTATGTCGGGG+AGG - chr8_4:2561024-2561043 Msa1307180:intron 50.0%
GGATTGTTCTTAGCTGCTGC+TGG + chr8_4:2561067-2561086 None:intergenic 50.0%
!! CTGGTGCCGTTGCTGATATT+GGG - chr8_4:2561160-2561179 Msa1307180:intron 50.0%
GCGATCTGATGGAGCTGATG+TGG - chr8_4:2557209-2557228 Msa1307180:CDS 55.0%
CCTCGATTGTTGTCACGCTG+CGG - chr8_4:2557232-2557251 Msa1307180:intron 55.0%
TGTCGGATTCCGTGCTTGAC+AGG - chr8_4:2558067-2558086 Msa1307180:intron 55.0%
GATTCCGTGCTTGACAGGTG+AGG - chr8_4:2558072-2558091 Msa1307180:intron 55.0%
CAGCAGTGTCTGTGCTTCAG+AGG + chr8_4:2559117-2559136 None:intergenic 55.0%
AGCACAGACACTGCTGTTGG+TGG - chr8_4:2559121-2559140 Msa1307180:intron 55.0%
GCACAGACACTGCTGTTGGT+GGG - chr8_4:2559122-2559141 Msa1307180:intron 55.0%
CGACATGTGTCAGATGCAGG+TGG - chr8_4:2559181-2559200 Msa1307180:intron 55.0%
CATGTGTCAGATGCAGGTGG+CGG - chr8_4:2559184-2559203 Msa1307180:intron 55.0%
GCAGCGACACTGCAAAGACA+CGG + chr8_4:2559441-2559460 None:intergenic 55.0%
! GTCGTACTGGTGTCTGACAC+CGG - chr8_4:2559516-2559535 Msa1307180:intron 55.0%
! TCGTACTGGTGTCTGACACC+GGG - chr8_4:2559517-2559536 Msa1307180:intron 55.0%
! TGCTGTTGGTGGACATGTCC+CGG + chr8_4:2559538-2559557 None:intergenic 55.0%
AGCAAGGACACTGCTGTTGG+TGG + chr8_4:2559549-2559568 None:intergenic 55.0%
TTGGCGACATGGGAATCAGC+AGG + chr8_4:2559894-2559913 None:intergenic 55.0%
AGGTGCACAGTTGGCGACAT+GGG + chr8_4:2559904-2559923 None:intergenic 55.0%
AAGGTGCACAGTTGGCGACA+TGG + chr8_4:2559905-2559924 None:intergenic 55.0%
CTGTGCACCTTCCAAATGGG+TGG - chr8_4:2559914-2559933 Msa1307180:intron 55.0%
GACCAACGGATCTGCCTCTT+CGG - chr8_4:2559952-2559971 Msa1307180:intron 55.0%
AGTAAAGCCTCGTCACCTCC+GGG + chr8_4:2560475-2560494 None:intergenic 55.0%
TCTCTGTTGCCGAGTCACTG+TGG + chr8_4:2561000-2561019 None:intergenic 55.0%
! AGCTGCTGCTGGAAGAGTGT+TGG + chr8_4:2561056-2561075 None:intergenic 55.0%
CCAATATCAGCAACGGCACC+AGG + chr8_4:2561162-2561181 None:intergenic 55.0%
!! CCTGGTGCCGTTGCTGATAT+TGG - chr8_4:2561159-2561178 Msa1307180:intron 55.0%
CCGCAGCGTGACAACAATCG+AGG + chr8_4:2557235-2557254 None:intergenic 60.0%
!! TGCTGTTGGTGGGCTTGTCC+CGG - chr8_4:2559132-2559151 Msa1307180:intron 60.0%
GTACGACACGTGCCAGATGC+AGG + chr8_4:2559503-2559522 None:intergenic 60.0%
GCATCTGGCACGTGTCGTAC+TGG - chr8_4:2559503-2559522 Msa1307180:intron 60.0%
TGGGGGACTTCGGCACATCA+TGG - chr8_4:2559774-2559793 Msa1307180:intron 60.0%
GACCGAAGAGGCAGATCCGT+TGG + chr8_4:2559957-2559976 None:intergenic 60.0%
TGATCATCCCGGAGGTGACG+AGG - chr8_4:2560465-2560484 Msa1307180:intron 60.0%
!! TGGTGGGCTTGTCCCGGTGT+CGG - chr8_4:2559138-2559157 Msa1307180:intron 65.0%
TCTGACGCGTGTCCGACACC+GGG + chr8_4:2559153-2559172 None:intergenic 65.0%
GTCTGACGCGTGTCCGACAC+CGG + chr8_4:2559154-2559173 None:intergenic 65.0%
GTCGGACACGCGTCAGACAC+CGG - chr8_4:2559156-2559175 Msa1307180:intron 65.0%
CACGTGCCAGATGCAGGTGG+CGG + chr8_4:2559497-2559516 None:intergenic 65.0%
CGACACGTGCCAGATGCAGG+TGG + chr8_4:2559500-2559519 None:intergenic 65.0%
GGGACACCGCCACCTGCATC+TGG - chr8_4:2559488-2559507 Msa1307180:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 2556609 2561599 2556609 ID=Msa1307180;Name=Msa1307180
chr8_4 mRNA 2556609 2561599 2556609 ID=Msa1307180-mRNA-1;Parent=Msa1307180;Name=Msa1307180-mRNA-1;_AED=0.03;_eAED=0.03;_QI=90|0.66|0.75|1|0.33|0.5|4|362|133
chr8_4 exon 2556609 2557245 2556609 ID=Msa1307180-mRNA-1:exon:796;Parent=Msa1307180-mRNA-1
chr8_4 exon 2557730 2557769 2557730 ID=Msa1307180-mRNA-1:exon:795;Parent=Msa1307180-mRNA-1
chr8_4 exon 2561261 2561356 2561261 ID=Msa1307180-mRNA-1:exon:794;Parent=Msa1307180-mRNA-1
chr8_4 exon 2561519 2561599 2561519 ID=Msa1307180-mRNA-1:exon:793;Parent=Msa1307180-mRNA-1
chr8_4 five_prime_UTR 2561519 2561599 2561519 ID=Msa1307180-mRNA-1:five_prime_utr;Parent=Msa1307180-mRNA-1
chr8_4 five_prime_UTR 2561348 2561356 2561348 ID=Msa1307180-mRNA-1:five_prime_utr;Parent=Msa1307180-mRNA-1
chr8_4 CDS 2561261 2561347 2561261 ID=Msa1307180-mRNA-1:cds;Parent=Msa1307180-mRNA-1
chr8_4 CDS 2557730 2557769 2557730 ID=Msa1307180-mRNA-1:cds;Parent=Msa1307180-mRNA-1
chr8_4 CDS 2556971 2557245 2556971 ID=Msa1307180-mRNA-1:cds;Parent=Msa1307180-mRNA-1
chr8_4 three_prime_UTR 2556609 2556970 2556609 ID=Msa1307180-mRNA-1:three_prime_utr;Parent=Msa1307180-mRNA-1
Gene Sequence

>Msa1307180

ATGGGTTCAAAATCAGAGACTTTAACCTTTGAGGATGTGGCTAAGCACAATAACAAGAACGATTGCTGGATCATAGTCAACAAAAAGGTATATGATGTTACCCCATTTTTGGATGATCATCCCGGAGGGAAGGATGCTACCACCGATTTTGAAGATGTTGGCCACAGTGACTCGGCAACAGAGATGATGGAAAAGTACTATGTCGGGGAGGTTGACGCCAACACTCTTCCAGCAGCAGCTAAGAACAATCCAACAGCACCAATTCAAGCATCTACCATAAGCAGCAATCAATCTTCTGGAGTTTTGTTGAAGTTCTTGCAGTACCTGGTGCCGTTGCTGATATTGGGATCTGCATTTGCTCTTCAGTACTATGGAAAAAGAAGCAAGTCCAATGAATCTTAA

Protein sequence

>Msa1307180

MGSKSETLTFEDVAKHNNKNDCWIIVNKKVYDVTPFLDDHPGGKDATTDFEDVGHSDSATEMMEKYYVGEVDANTLPAAAKNNPTAPIQASTISSNQSSGVLLKFLQYLVPLLILGSAFALQYYGKRSKSNES*