AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1316360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316360 MtrunA17_Chr8g0346311 88.732 142 7 1 1 133 1 142 3.53e-90 258
Msa1316360 MtrunA17_Chr3g0127451 51.471 136 54 2 1 127 1 133 6.64e-46 145
Msa1316360 MtrunA17_Chr7g0276081 55.714 140 52 2 3 133 4 142 1.78e-45 144
Msa1316360 MtrunA17_Chr4g0010061 44.928 138 64 3 1 129 14 148 4.79e-41 133
Msa1316360 MtrunA17_Chr5g0419651 54.444 90 31 2 1 81 1 89 5.26e-28 99.8
Msa1316360 MtrunA17_Chr3g0134591 30.000 140 78 3 3 127 2 136 6.81e-20 79.7
Msa1316360 MtrunA17_Chr3g0115151 31.852 135 62 3 1 106 457 590 4.55e-15 70.5
Msa1316360 MtrunA17_Chr3g0115131 46.053 76 31 2 5 71 516 590 2.13e-14 68.6
Msa1316360 MtrunA17_Chr5g0424491 41.463 82 38 2 1 73 513 593 2.61e-13 65.5
Msa1316360 MtrunA17_Chr6g0486891 37.681 69 35 1 12 72 50 118 4.02e-13 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316360 AT5G53560.1 48.529 136 58 3 1 127 1 133 5.94e-45 143
Msa1316360 AT5G48810.1 48.889 135 59 2 1 126 1 134 1.37e-43 140
Msa1316360 AT2G32720.1 49.630 135 56 3 1 126 1 132 1.53e-42 137
Msa1316360 AT2G32720.2 50.000 114 45 3 22 126 22 132 1.63e-30 107
Msa1316360 AT2G46650.1 46.154 130 58 3 8 127 5 132 1.09e-28 102
Msa1316360 AT1G26340.1 46.512 86 37 1 1 77 1 86 2.88e-26 96.3
Msa1316360 AT1G37130.1 41.250 80 37 2 1 71 538 616 1.25e-14 69.7
Msa1316360 AT1G60660.1 41.176 68 32 1 12 71 53 120 1.54e-14 65.5
Msa1316360 AT1G77760.1 40.000 80 38 2 1 71 541 619 2.73e-13 65.9

Find 33 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTTGCTCTTCAGTACTA+TGG 0.296249 8_4:-16662640 Msa1316360:CDS
CCTGGTGCCGTTGCTGATAT+TGG 0.324237 8_4:-16662668 Msa1316360:CDS
ATTCATTACTTAAGATTCAT+TGG 0.334499 8_4:+16662603 None:intergenic
AGAAGATTGATTGCTGCTTA+TGG 0.334533 8_4:+16662717 None:intergenic
ATCAGAGACTTTAACCTTTG+AGG 0.335279 8_4:-16666951 Msa1316360:CDS
GACTTTAACCTTTGAGGATG+TGG 0.376866 8_4:-16666945 Msa1316360:CDS
ATAAGCAGCAATCAATCTTC+TGG 0.400727 8_4:-16662715 Msa1316360:CDS
TGATGGAAAAGTACTATGTC+GGG 0.401001 8_4:-16662807 Msa1316360:CDS
CTGGTGCCGTTGCTGATATT+GGG 0.414415 8_4:-16662667 Msa1316360:CDS
CTTATGGTAGATGCTTGAAT+TGG 0.417094 8_4:+16662733 None:intergenic
GATGCTTGAATTGGTGCTGT+TGG 0.425349 8_4:+16662742 None:intergenic
CTGGATCATAGTCAACAAAA+AGG 0.426357 8_4:-16666897 Msa1316360:intron
GGATTGTTCTTAGCTGCTGC+TGG 0.435494 8_4:+16662763 None:intergenic
AATCTTGCAGTTGAAGAAGA+TGG 0.435798 8_4:-16666981 Msa1316360:intron
TAAGTAATGAATTTGAACTT+TGG 0.441457 8_4:-16662592 Msa1316360:three_prime_UTR
GTGGCCAACATCTTCAAAAT+CGG 0.455103 8_4:+16662849 None:intergenic
CGCAATCTAGCATGAATAAG+AGG 0.472461 8_4:+16662425 None:intergenic
ACAATAACAAGAACGATTGC+TGG 0.477730 8_4:-16666916 Msa1316360:CDS
GTTGAAGTTCTTGCAGTACC+TGG 0.488377 8_4:-16662686 Msa1316360:CDS
TAATAATCTATATCAACATA+AGG 0.507284 8_4:-16662528 Msa1316360:three_prime_UTR
CCAATATCAGCAACGGCACC+AGG 0.516481 8_4:+16662668 None:intergenic
ATCTTGCAGTTGAAGAAGAT+GGG 0.518015 8_4:-16666980 Msa1316360:intron
TGACTCGGCAACAGAGATGA+TGG 0.533371 8_4:-16662824 Msa1316360:CDS
ATGATGGAAAAGTACTATGT+CGG 0.538408 8_4:-16662808 Msa1316360:CDS
AGCTGCTGCTGGAAGAGTGT+TGG 0.552849 8_4:+16662774 None:intergenic
GAGATATTATATCAGAGTCA+TGG 0.553803 8_4:+16662401 None:intergenic
GTGCTTAGCCACATCCTCAA+AGG 0.580670 8_4:+16666937 None:intergenic
AGATGTTGGCCACAGTGACT+CGG 0.590642 8_4:-16662839 Msa1316360:CDS
GCCAACATCTTCAAAATCGG+TGG 0.624406 8_4:+16662852 None:intergenic
GCAGATCCCAATATCAGCAA+CGG 0.642745 8_4:+16662661 None:intergenic
GATGGAAAAGTACTATGTCG+GGG 0.689368 8_4:-16662806 Msa1316360:CDS
TCTCTGTTGCCGAGTCACTG+TGG 0.717695 8_4:+16662830 None:intergenic
GGAAAAGTACTATGTCGGGG+AGG 0.724893 8_4:-16662803 Msa1316360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAATATATTTTATTTT+GGG + chr8_4:16665009-16665028 None:intergenic 0.0%
!!! ATATTAAATATATTTTATTT+TGG + chr8_4:16665010-16665029 None:intergenic 0.0%
!!! TTAAAATCTGATTATTTTTT+TGG - chr8_4:16662377-16662396 Msa1316360:three_prime_UTR 10.0%
!!! TAAAATCTGATTATTTTTTT+GGG - chr8_4:16662378-16662397 Msa1316360:three_prime_UTR 10.0%
!! TATTGTAGTTAAAAAAAAAT+TGG - chr8_4:16663756-16663775 Msa1316360:intron 10.0%
!! ATTGTAGTTAAAAAAAAATT+GGG - chr8_4:16663757-16663776 Msa1316360:intron 10.0%
!!! ACTGTTTTTTTTTTTTTTTT+GGG + chr8_4:16664939-16664958 None:intergenic 10.0%
!!! TACTGTTTTTTTTTTTTTTT+TGG + chr8_4:16664940-16664959 None:intergenic 10.0%
!! AAGTAATGAAATTTATATTT+AGG - chr8_4:16665828-16665847 Msa1316360:intron 10.0%
!! AAAAACTAAATTGGAATAAA+AGG + chr8_4:16663124-16663143 None:intergenic 15.0%
!!! ATAAATTTATACTCTTTTTG+AGG + chr8_4:16663437-16663456 None:intergenic 15.0%
!! TTGTAGTTAAAAAAAAATTG+GGG - chr8_4:16663758-16663777 Msa1316360:intron 15.0%
!!! AATATGTTTTGATAATTAGA+CGG + chr8_4:16663964-16663983 None:intergenic 15.0%
!!! TTTTTTAAACATAAGTATTG+TGG - chr8_4:16664323-16664342 Msa1316360:intron 15.0%
!! TTTAAATTAGTAAACTCTTA+TGG - chr8_4:16664442-16664461 Msa1316360:intron 15.0%
!! TTAAATTAGTAAACTCTTAT+GGG - chr8_4:16664443-16664462 Msa1316360:intron 15.0%
!!! TTTCTGTTTTTTTTCTTTTT+CGG - chr8_4:16665102-16665121 Msa1316360:intron 15.0%
!!! AGAGATTTTAAAAAGTAAAT+AGG + chr8_4:16665269-16665288 None:intergenic 15.0%
!! TATAAATTTATGTTGTTAGA+TGG - chr8_4:16665769-16665788 Msa1316360:intron 15.0%
!! TAATAATCTATATCAACATA+AGG - chr8_4:16666933-16666952 Msa1316360:CDS 15.0%
!!! ATATCTCAAATATTTTGAAA+TGG - chr8_4:16667076-16667095 Msa1316360:intron 15.0%
!!! ATTTTAAGAACTGAAAATGA+AGG + chr8_4:16662364-16662383 None:intergenic 20.0%
!!! TTATGTTATTGTCTAGTTTT+TGG - chr8_4:16662914-16662933 Msa1316360:intron 20.0%
!! TAAATTGGAATAAAAGGTTA+TGG + chr8_4:16663118-16663137 None:intergenic 20.0%
!!! TTTTTCAATTTTTTTTGGCT+TGG - chr8_4:16663148-16663167 Msa1316360:intron 20.0%
!!! TTTTAAACTTTCTCGATTTT+GGG + chr8_4:16663284-16663303 None:intergenic 20.0%
!!! TTTTTAAACTTTCTCGATTT+TGG + chr8_4:16663285-16663304 None:intergenic 20.0%
!! TAAACATTCAATCTCTTATT+GGG + chr8_4:16663395-16663414 None:intergenic 20.0%
!! TTAAACATTCAATCTCTTAT+TGG + chr8_4:16663396-16663415 None:intergenic 20.0%
!! TGTAGTTAAAAAAAAATTGG+GGG - chr8_4:16663759-16663778 Msa1316360:intron 20.0%
!! ACAATATTAAAGCAAAATGT+TGG + chr8_4:16663786-16663805 None:intergenic 20.0%
!!! TTTTGCTTTAATATTGTATG+TGG - chr8_4:16663789-16663808 Msa1316360:intron 20.0%
!!! GCATCTAATTTTATACTAAT+TGG - chr8_4:16663811-16663830 Msa1316360:intron 20.0%
!!! TTTAACTTGTTTGCATTAAA+AGG - chr8_4:16663834-16663853 Msa1316360:intron 20.0%
!!! TTTGAATTTGCTGTAAAAAT+TGG - chr8_4:16663883-16663902 Msa1316360:intron 20.0%
!! AAAAATTGGATAAAGTTACA+TGG - chr8_4:16663897-16663916 Msa1316360:intron 20.0%
!! AATGATGAGAGAAAAAAAAA+AGG + chr8_4:16664009-16664028 None:intergenic 20.0%
!! AAAAAAAAAACAGAAAGACA+TGG - chr8_4:16664857-16664876 Msa1316360:intron 20.0%
!! AAAAAAAAACAGTAGAATTG+TGG - chr8_4:16664946-16664965 Msa1316360:intron 20.0%
!! AAAAAAAACAGTAGAATTGT+GGG - chr8_4:16664947-16664966 Msa1316360:intron 20.0%
!!! TTCTGTTTTTTTTCTTTTTC+GGG - chr8_4:16665103-16665122 Msa1316360:intron 20.0%
!!! TACTTTTTAAAATCTCTTAG+AGG - chr8_4:16665272-16665291 Msa1316360:intron 20.0%
!! TATTTATTAGTAGCAATGTA+GGG + chr8_4:16665444-16665463 None:intergenic 20.0%
!! TTATTTATTAGTAGCAATGT+AGG + chr8_4:16665445-16665464 None:intergenic 20.0%
!!! ATTTCTCTCTAAGATTAAAA+TGG + chr8_4:16665694-16665713 None:intergenic 20.0%
!! GTATTCCTATGTTTATTATA+GGG + chr8_4:16665918-16665937 None:intergenic 20.0%
!! TGTATTCCTATGTTTATTAT+AGG + chr8_4:16665919-16665938 None:intergenic 20.0%
!!! TTTGTACTTTTGTTATTAGT+AGG - chr8_4:16666000-16666019 Msa1316360:intron 20.0%
!!! ATTTTTCACATGACTAAAAT+GGG + chr8_4:16666205-16666224 None:intergenic 20.0%
!!! GTTGTTATTTATTATTCTCA+GGG - chr8_4:16666380-16666399 Msa1316360:intron 20.0%
!! ATTCATTACTTAAGATTCAT+TGG + chr8_4:16666861-16666880 None:intergenic 20.0%
!! TAAGTAATGAATTTGAACTT+TGG - chr8_4:16666869-16666888 Msa1316360:intron 20.0%
! AGGAATATGAATATGATTCA+TGG - chr8_4:16662774-16662793 Msa1316360:CDS 25.0%
! TGAATATGATTCATGGTATT+AGG - chr8_4:16662781-16662800 Msa1316360:CDS 25.0%
! GAATATGATTCATGGTATTA+GGG - chr8_4:16662782-16662801 Msa1316360:CDS 25.0%
! TAGAATACACATTGAATTCA+GGG + chr8_4:16662960-16662979 None:intergenic 25.0%
! ATAGAATACACATTGAATTC+AGG + chr8_4:16662961-16662980 None:intergenic 25.0%
!! TGATCTGTCAATAATTTGTA+TGG - chr8_4:16663017-16663036 Msa1316360:intron 25.0%
!! ATGTAGTCATTCTAATTTGT+AGG + chr8_4:16663233-16663252 None:intergenic 25.0%
! TTAATACTCACTCTCTAATT+GGG - chr8_4:16663330-16663349 Msa1316360:intron 25.0%
!! TTAAATCAATGTGAAGTGTT+GGG - chr8_4:16663353-16663372 Msa1316360:intron 25.0%
!!! GAAATTAGATGGATTTTTGA+AGG + chr8_4:16663479-16663498 None:intergenic 25.0%
! ATGATGCAAAAAAACTGTAA+TGG + chr8_4:16663513-16663532 None:intergenic 25.0%
! TTAGACTCTATTTATATCAG+TGG + chr8_4:16663863-16663882 None:intergenic 25.0%
!!! TAAAGTTACATGGTTTTAGA+AGG - chr8_4:16663907-16663926 Msa1316360:intron 25.0%
! CATATTCATACTGTGAAAAT+TGG - chr8_4:16663978-16663997 Msa1316360:intron 25.0%
! CACTAAAAGTTAAAAATCCA+TGG + chr8_4:16664227-16664246 None:intergenic 25.0%
! ATCAATGAAACTATAATGCT+AGG - chr8_4:16664279-16664298 Msa1316360:intron 25.0%
! AAATATCCAACATTCTAACT+TGG + chr8_4:16664361-16664380 None:intergenic 25.0%
! AATTTGCAAAGATTTAACCA+GGG + chr8_4:16664650-16664669 None:intergenic 25.0%
! AGAAAAAAAACAGAAAGACA+CGG + chr8_4:16665098-16665117 None:intergenic 25.0%
!!! TTTTTAAAATCTCTTAGAGG+AGG - chr8_4:16665275-16665294 Msa1316360:intron 25.0%
! AGTATTTCATATTACTCAGT+GGG - chr8_4:16665390-16665409 Msa1316360:intron 25.0%
! TTCTTAAACGAAATAATCAG+TGG + chr8_4:16665487-16665506 None:intergenic 25.0%
! GTATTTATCATGTTACTGAT+GGG + chr8_4:16665614-16665633 None:intergenic 25.0%
! TACTTTAAACAAACGCATTT+CGG + chr8_4:16665813-16665832 None:intergenic 25.0%
! ATTACAATGGAATACAAGTT+AGG + chr8_4:16666051-16666070 None:intergenic 25.0%
! AACTTGTATTCCATTGTAAT+AGG - chr8_4:16666051-16666070 Msa1316360:intron 25.0%
! ACATCATATACCTATTACAA+TGG + chr8_4:16666064-16666083 None:intergenic 25.0%
!! CATTTTTCACATGACTAAAA+TGG + chr8_4:16666206-16666225 None:intergenic 25.0%
!!! CATTTTAGTCATGTGAAAAA+TGG - chr8_4:16666204-16666223 Msa1316360:intron 25.0%
!!! CTGTCTCAAATTATTTTTCT+CGG - chr8_4:16666348-16666367 Msa1316360:intron 25.0%
!!! CGTTGTTATTTATTATTCTC+AGG - chr8_4:16666379-16666398 Msa1316360:intron 25.0%
!!! TGTGTTTTATTATCATGTAG+AGG - chr8_4:16666987-16667006 Msa1316360:intron 25.0%
!!! GTGTTTTATTATCATGTAGA+GGG - chr8_4:16666988-16667007 Msa1316360:intron 25.0%
!! TTTGTGTTCTTGATTTTCTA+TGG - chr8_4:16667013-16667032 Msa1316360:intron 25.0%
ACTGAGAATGATTGTGATAT+AGG - chr8_4:16662754-16662773 Msa1316360:CDS 30.0%
CATTAGATCATGTCATGATA+TGG + chr8_4:16663074-16663093 None:intergenic 30.0%
! TCTAATTTGTAGGAAGATCA+AGG + chr8_4:16663223-16663242 None:intergenic 30.0%
GTTAATACTCACTCTCTAAT+TGG - chr8_4:16663329-16663348 Msa1316360:intron 30.0%
GTTAAATCAATGTGAAGTGT+TGG - chr8_4:16663352-16663371 Msa1316360:intron 30.0%
!! ATGGATTTTTGAAGGAAATG+AGG + chr8_4:16663471-16663490 None:intergenic 30.0%
TTAACATCACGGAAATTAGA+TGG + chr8_4:16663490-16663509 None:intergenic 30.0%
AACTGTAATGGTTAACATCA+CGG + chr8_4:16663501-16663520 None:intergenic 30.0%
! TGCATACATATTAAGAGTGT+CGG + chr8_4:16663628-16663647 None:intergenic 30.0%
!! TTTCTCTCATCATTTTGACA+TGG - chr8_4:16664015-16664034 Msa1316360:intron 30.0%
! TATATTTTGCACAGTTGCAA+AGG + chr8_4:16664044-16664063 None:intergenic 30.0%
AATTGCTAAAGAGTGAAGAA+CGG + chr8_4:16664178-16664197 None:intergenic 30.0%
TCATTACCAAGTTAGAATGT+TGG - chr8_4:16664352-16664371 Msa1316360:intron 30.0%
! AGTGTTGAAAACATCTACAA+TGG + chr8_4:16664413-16664432 None:intergenic 30.0%
ATGATTAATCTAGTAACAGC+TGG + chr8_4:16664560-16664579 None:intergenic 30.0%
GAATTTGCAAAGATTTAACC+AGG + chr8_4:16664651-16664670 None:intergenic 30.0%
GAGTATTTCATATTACTCAG+TGG - chr8_4:16665389-16665408 Msa1316360:intron 30.0%
GTATTTCATATTACTCAGTG+GGG - chr8_4:16665391-16665410 Msa1316360:intron 30.0%
TATTTCATATTACTCAGTGG+GGG - chr8_4:16665392-16665411 Msa1316360:intron 30.0%
CGTATTTATCATGTTACTGA+TGG + chr8_4:16665615-16665634 None:intergenic 30.0%
AATACGATCTTTCATATGAG+TGG - chr8_4:16665629-16665648 Msa1316360:intron 30.0%
GAGAAATATGAACTCATCAT+TGG - chr8_4:16665707-16665726 Msa1316360:intron 30.0%
TTAGATGGCATAAACTACAT+TGG - chr8_4:16665784-16665803 Msa1316360:intron 30.0%
ATATTTAGGAATAACTTCCC+AGG - chr8_4:16665842-16665861 Msa1316360:intron 30.0%
TAGCACCCTATAATAAACAT+AGG - chr8_4:16665910-16665929 Msa1316360:intron 30.0%
ACACATTCACATGAATGAAT+GGG + chr8_4:16665951-16665970 None:intergenic 30.0%
AACACATTCACATGAATGAA+TGG + chr8_4:16665952-16665971 None:intergenic 30.0%
! ATATGATGTTACCCCATTTT+TGG - chr8_4:16666075-16666094 Msa1316360:intron 30.0%
! TCATGTCTTTAAAGAAGGTA+GGG - chr8_4:16666319-16666338 Msa1316360:intron 30.0%
TGAGTTGCTGAAAAAAACTA+CGG + chr8_4:16666419-16666438 None:intergenic 30.0%
! TTTTCTTGCTCTCTTCTTAT+AGG + chr8_4:16666511-16666530 None:intergenic 30.0%
ACATTCAACTAACAATCTTC+TGG - chr8_4:16666562-16666581 Msa1316360:intron 30.0%
!! ATGATGGAAAAGTACTATGT+CGG - chr8_4:16666653-16666672 Msa1316360:intron 30.0%
GAGATATTATATCAGAGTCA+TGG + chr8_4:16667063-16667082 None:intergenic 30.0%
!! TACAAGATTTTGACAGAGGT+TGG + chr8_4:16662314-16662333 None:intergenic 35.0%
!! TGCTTACAAGATTTTGACAG+AGG + chr8_4:16662318-16662337 None:intergenic 35.0%
AATCTTGCAGTTGAAGAAGA+TGG - chr8_4:16662480-16662499 Msa1316360:three_prime_UTR 35.0%
ATCTTGCAGTTGAAGAAGAT+GGG - chr8_4:16662481-16662500 Msa1316360:three_prime_UTR 35.0%
ATCAGAGACTTTAACCTTTG+AGG - chr8_4:16662510-16662529 Msa1316360:three_prime_UTR 35.0%
ACAATAACAAGAACGATTGC+TGG - chr8_4:16662545-16662564 Msa1316360:three_prime_UTR 35.0%
CTGGATCATAGTCAACAAAA+AGG - chr8_4:16662564-16662583 Msa1316360:three_prime_UTR 35.0%
!!! GGTATTAGGGTTTTAAACTG+CGG - chr8_4:16662795-16662814 Msa1316360:CDS 35.0%
GACAGATCAAAATACTCTTG+TGG + chr8_4:16663006-16663025 None:intergenic 35.0%
CACTCTTAATATGTATGCAG+TGG - chr8_4:16663629-16663648 Msa1316360:intron 35.0%
TAATATGTATGCAGTGGTGT+TGG - chr8_4:16663635-16663654 Msa1316360:intron 35.0%
!! ATCACATTCTCAGCTTGTTA+TGG - chr8_4:16664071-16664090 Msa1316360:intron 35.0%
!! TCACATTCTCAGCTTGTTAT+GGG - chr8_4:16664072-16664091 Msa1316360:intron 35.0%
AGATTCAACTTGGTAGAGTT+AGG + chr8_4:16664128-16664147 None:intergenic 35.0%
CAATGAAGCTAGATTCAACT+TGG + chr8_4:16664138-16664157 None:intergenic 35.0%
GGACAAATTGACAAATCACA+AGG + chr8_4:16664206-16664225 None:intergenic 35.0%
! GTGATTTGTCAATTTGTCCA+TGG - chr8_4:16664207-16664226 Msa1316360:intron 35.0%
! CTATAATGCTAGGTCTTTTC+TGG - chr8_4:16664289-16664308 Msa1316360:intron 35.0%
!! TTGAGTTGATAACCTTGCTT+TGG - chr8_4:16664500-16664519 Msa1316360:intron 35.0%
AGATTAGATTCTCCAAAGCA+AGG + chr8_4:16664515-16664534 None:intergenic 35.0%
GAAGACTTTGCTACTCTAAA+CGG + chr8_4:16664622-16664641 None:intergenic 35.0%
! GCTGATTATGAAGATTGGTT+TGG + chr8_4:16664722-16664741 None:intergenic 35.0%
TTTCAAAACGACTGCTATGT+AGG - chr8_4:16664974-16664993 Msa1316360:intron 35.0%
!!! AGTTTTGAGATGAGAAAGCA+AGG + chr8_4:16665200-16665219 None:intergenic 35.0%
GAGTAATATGAAATACTCCG+TGG + chr8_4:16665387-16665406 None:intergenic 35.0%
TTCGTTTAAGAACTAGCATC+AGG - chr8_4:16665495-16665514 Msa1316360:intron 35.0%
! GAACTCATCATTGGTTACTT+CGG - chr8_4:16665716-16665735 Msa1316360:intron 35.0%
ATTTCCATCATTGCTTTCCT+GGG + chr8_4:16665862-16665881 None:intergenic 35.0%
AATTTCCATCATTGCTTTCC+TGG + chr8_4:16665863-16665882 None:intergenic 35.0%
!! GTCTCGGTTTATTTTTCTCA+GGG + chr8_4:16666270-16666289 None:intergenic 35.0%
!! TGTCTCGGTTTATTTTTCTC+AGG + chr8_4:16666271-16666290 None:intergenic 35.0%
! TTGCCTCATGTCTTTAAAGA+AGG - chr8_4:16666314-16666333 Msa1316360:intron 35.0%
! CTACCTTCTTTAAAGACATG+AGG + chr8_4:16666320-16666339 None:intergenic 35.0%
! CTCATGTCTTTAAAGAAGGT+AGG - chr8_4:16666318-16666337 Msa1316360:intron 35.0%
! CATGTCTTTAAAGAAGGTAG+GGG - chr8_4:16666320-16666339 Msa1316360:intron 35.0%
GAGTTGCTGAAAAAAACTAC+GGG + chr8_4:16666418-16666437 None:intergenic 35.0%
! AATCTTCTGGTGTTTTACAC+AGG - chr8_4:16666575-16666594 Msa1316360:intron 35.0%
! ATCTTCTGGTGTTTTACACA+GGG - chr8_4:16666576-16666595 Msa1316360:intron 35.0%
!! TGATGGAAAAGTACTATGTC+GGG - chr8_4:16666654-16666673 Msa1316360:intron 35.0%
CTTATGGTAGATGCTTGAAT+TGG + chr8_4:16666731-16666750 None:intergenic 35.0%
! AGAAGATTGATTGCTGCTTA+TGG + chr8_4:16666747-16666766 None:intergenic 35.0%
ATAAGCAGCAATCAATCTTC+TGG - chr8_4:16666746-16666765 Msa1316360:intron 35.0%
!!! GGCTATAGTTTTAGACTCTT+TGG - chr8_4:16666890-16666909 Msa1316360:intron 35.0%
! ACATAAGGCAGTGTTCTTTT+TGG - chr8_4:16666948-16666967 Msa1316360:CDS 35.0%
! GACTTTAACCTTTGAGGATG+TGG - chr8_4:16662516-16662535 Msa1316360:three_prime_UTR 40.0%
! CAAAATACTCTTGTGGACTG+TGG + chr8_4:16662999-16663018 None:intergenic 40.0%
!! AGTATTAACGAGAGTGTTGC+TGG + chr8_4:16663318-16663337 None:intergenic 40.0%
!! TGAAGTGTTGGGACATACAT+TGG - chr8_4:16663364-16663383 Msa1316360:intron 40.0%
ACAGGGGGTTAATAGACATT+TGG + chr8_4:16663547-16663566 None:intergenic 40.0%
TATTAACCCCCTGTTATGAG+AGG - chr8_4:16663553-16663572 Msa1316360:intron 40.0%
TTCCTTACCTCTCATAACAG+GGG + chr8_4:16663563-16663582 None:intergenic 40.0%
GTTCCTTACCTCTCATAACA+GGG + chr8_4:16663564-16663583 None:intergenic 40.0%
AGTTCCTTACCTCTCATAAC+AGG + chr8_4:16663565-16663584 None:intergenic 40.0%
AGGTAAGGAACTATGATGCA+CGG - chr8_4:16663573-16663592 Msa1316360:intron 40.0%
!!! GTGAGGATAATGGGAGTTTT+AGG - chr8_4:16663725-16663744 Msa1316360:intron 40.0%
!!! TAATGGGAGTTTTAGGCACA+AGG - chr8_4:16663732-16663751 Msa1316360:intron 40.0%
GACTTTAGACGCTAGAATAC+TGG + chr8_4:16664590-16664609 None:intergenic 40.0%
AGCCATGTTCACTGAAGTAA+CGG - chr8_4:16664694-16664713 Msa1316360:intron 40.0%
TTCCGTTACTTCAGTGAACA+TGG + chr8_4:16664699-16664718 None:intergenic 40.0%
GTGCAGCTGATTATGAAGAT+TGG + chr8_4:16664727-16664746 None:intergenic 40.0%
GACTCTGCAAAGACACAATT+TGG - chr8_4:16664884-16664903 Msa1316360:intron 40.0%
AAAGACACAATTTGGCGACA+CGG - chr8_4:16664892-16664911 Msa1316360:intron 40.0%
AACGACTGCTATGTAGGATT+TGG - chr8_4:16664980-16664999 Msa1316360:intron 40.0%
TGCAATTTACTCTGAGCACT+TGG - chr8_4:16665302-16665321 Msa1316360:intron 40.0%
GCAATTTACTCTGAGCACTT+GGG - chr8_4:16665303-16665322 Msa1316360:intron 40.0%
! AGACAGCAAACTTTAAGGGA+GGG + chr8_4:16665335-16665354 None:intergenic 40.0%
! TAGACAGCAAACTTTAAGGG+AGG + chr8_4:16665336-16665355 None:intergenic 40.0%
!! TCCCTTAAAGTTTGCTGTCT+AGG - chr8_4:16665335-16665354 Msa1316360:intron 40.0%
CCCTAGACAGCAAACTTTAA+GGG + chr8_4:16665339-16665358 None:intergenic 40.0%
!! CCCTTAAAGTTTGCTGTCTA+GGG - chr8_4:16665336-16665355 Msa1316360:intron 40.0%
!! CCTTAAAGTTTGCTGTCTAG+GGG - chr8_4:16665337-16665356 Msa1316360:intron 40.0%
!! CTTAAAGTTTGCTGTCTAGG+GGG - chr8_4:16665338-16665357 Msa1316360:intron 40.0%
CAAGCCACTGAAATATTCCA+CGG - chr8_4:16665367-16665386 Msa1316360:intron 40.0%
TACTCCGTGGAATATTTCAG+TGG + chr8_4:16665374-16665393 None:intergenic 40.0%
TAGTAGCAATGTAGGGACTT+GGG + chr8_4:16665437-16665456 None:intergenic 40.0%
TTAGTAGCAATGTAGGGACT+TGG + chr8_4:16665438-16665457 None:intergenic 40.0%
!! TTGGCTGGTTTATAGACCAA+CGG - chr8_4:16665573-16665592 Msa1316360:intron 40.0%
TTGGTTACTTCGGCAAACTT+CGG - chr8_4:16665726-16665745 Msa1316360:intron 40.0%
GGGATGATCATCCAAAAATG+GGG + chr8_4:16666089-16666108 None:intergenic 40.0%
CGGGATGATCATCCAAAAAT+GGG + chr8_4:16666090-16666109 None:intergenic 40.0%
!! CCATTTTTGGATGATCATCC+CGG - chr8_4:16666088-16666107 Msa1316360:intron 40.0%
AGACATGAGGCAAAGTTGTT+CGG + chr8_4:16666307-16666326 None:intergenic 40.0%
CTTCTTATAGGCTATGACAG+AGG + chr8_4:16666499-16666518 None:intergenic 40.0%
!!! ACCACCGATTTTGAAGATGT+TGG - chr8_4:16666608-16666627 Msa1316360:intron 40.0%
GTGGCCAACATCTTCAAAAT+CGG + chr8_4:16666615-16666634 None:intergenic 40.0%
!! GATGGAAAAGTACTATGTCG+GGG - chr8_4:16666655-16666674 Msa1316360:intron 40.0%
GCATTTGCTCTTCAGTACTA+TGG - chr8_4:16666821-16666840 Msa1316360:intron 40.0%
CGCAATCTAGCATGAATAAG+AGG + chr8_4:16667039-16667058 None:intergenic 40.0%
TGACGTCGCAGTAATGATTG+TGG - chr8_4:16663048-16663067 Msa1316360:intron 45.0%
TCCTTACCTCTCATAACAGG+GGG + chr8_4:16663562-16663581 None:intergenic 45.0%
TGTCTCCTTGTCTGTTGTGT+CGG - chr8_4:16663686-16663705 Msa1316360:intron 45.0%
TTATCCTCACCTGTCAAGCA+CGG + chr8_4:16663715-16663734 None:intergenic 45.0%
TGCTTGACAGGTGAGGATAA+TGG - chr8_4:16663715-16663734 Msa1316360:intron 45.0%
GCTTGACAGGTGAGGATAAT+GGG - chr8_4:16663716-16663735 Msa1316360:intron 45.0%
!! TCTCAGCTTGTTATGGGAGA+TGG - chr8_4:16664078-16664097 Msa1316360:intron 45.0%
!! ATGCTAGGTCTTTTCTGGTG+TGG - chr8_4:16664294-16664313 Msa1316360:intron 45.0%
ACTCTTATGGGTAGTGTCTG+CGG - chr8_4:16664455-16664474 Msa1316360:intron 45.0%
AGCAAAGTCTTCGATATCCC+TGG - chr8_4:16664630-16664649 Msa1316360:intron 45.0%
ATTTACTCTGAGCACTTGGG+AGG - chr8_4:16665306-16665325 Msa1316360:intron 45.0%
TTTACTCTGAGCACTTGGGA+GGG - chr8_4:16665307-16665326 Msa1316360:intron 45.0%
CCCCTAGACAGCAAACTTTA+AGG + chr8_4:16665340-16665359 None:intergenic 45.0%
CGTGGAATATTTCAGTGGCT+TGG + chr8_4:16665369-16665388 None:intergenic 45.0%
TATTACTCAGTGGGGGACTT+CGG - chr8_4:16665399-16665418 Msa1316360:intron 45.0%
TCAGTGGTAGAACTGCTTAG+TGG + chr8_4:16665471-16665490 None:intergenic 45.0%
CAACTGTGCACCTTCCAAAT+GGG - chr8_4:16665546-16665565 Msa1316360:intron 45.0%
TTCGGACAGGTCATGATATC+TGG - chr8_4:16665744-16665763 Msa1316360:intron 45.0%
ACTTCCCAGGAAAGCAATGA+TGG - chr8_4:16665855-16665874 Msa1316360:intron 45.0%
GGGTGCTAGAAAATTCACTC+AGG + chr8_4:16665898-16665917 None:intergenic 45.0%
CCGGGATGATCATCCAAAAA+TGG + chr8_4:16666091-16666110 None:intergenic 45.0%
! TTTTTGGATGATCATCCCGG+AGG - chr8_4:16666091-16666110 Msa1316360:intron 45.0%
GAGGCTTTACTTTCTGCTAC+AGG - chr8_4:16666118-16666137 Msa1316360:intron 45.0%
GGGTAGGAACAAAGTTGTCT+CGG + chr8_4:16666286-16666305 None:intergenic 45.0%
GACATGAGGCAAAGTTGTTC+GGG + chr8_4:16666306-16666325 None:intergenic 45.0%
! TCTGGTGTTTTACACAGGGA+AGG - chr8_4:16666580-16666599 Msa1316360:intron 45.0%
GCCAACATCTTCAAAATCGG+TGG + chr8_4:16666612-16666631 None:intergenic 45.0%
!! GATGCTTGAATTGGTGCTGT+TGG + chr8_4:16666722-16666741 None:intergenic 45.0%
GTTGAAGTTCTTGCAGTACC+TGG - chr8_4:16666775-16666794 Msa1316360:intron 45.0%
GCAGATCCCAATATCAGCAA+CGG + chr8_4:16666803-16666822 None:intergenic 45.0%
!! AAAAAAAAAAAAAACTAAAT+TGG + chr8_4:16663133-16663152 None:intergenic 5.0%
!!! TTTTTTTTTTCAATTTTTTT+TGG - chr8_4:16663143-16663162 Msa1316360:intron 5.0%
GTGCTTAGCCACATCCTCAA+AGG + chr8_4:16662527-16662546 None:intergenic 50.0%
TGCGGTCTCAGTAACGATTG+TGG - chr8_4:16662813-16662832 Msa1316360:CDS 50.0%
TCACATCACGAGCGATCTGA+TGG - chr8_4:16662836-16662855 Msa1316360:CDS 50.0%
ACCCCCTGTTATGAGAGGTA+AGG - chr8_4:16663558-16663577 Msa1316360:intron 50.0%
ACGCGACACGCTTAATGCTA+AGG + chr8_4:16663602-16663621 None:intergenic 50.0%
GGAATCCGACACAACAGACA+AGG + chr8_4:16663694-16663713 None:intergenic 50.0%
AGAGTGAAGAACGGTGTGAC+TGG + chr8_4:16664169-16664188 None:intergenic 50.0%
GCTGCTTACAGGACAAGCTA+TGG + chr8_4:16664677-16664696 None:intergenic 50.0%
CAGTGAACATGGCTGCTTAC+AGG + chr8_4:16664688-16664707 None:intergenic 50.0%
TGAAGCACAGACACTGCTGT+TGG - chr8_4:16664754-16664773 Msa1316360:intron 50.0%
GCATCTGACACATGTCGTAC+CGG + chr8_4:16664814-16664833 None:intergenic 50.0%
GTACGACATGTGTCAGATGC+AGG - chr8_4:16664814-16664833 Msa1316360:intron 50.0%
GACACGTGTCTTTGCAGTGA+AGG + chr8_4:16665047-16665066 None:intergenic 50.0%
GACACTGCAAAGACACGGTT+TGG + chr8_4:16665071-16665090 None:intergenic 50.0%
GAAAGCAAGGACACTGCTGT+TGG + chr8_4:16665187-16665206 None:intergenic 50.0%
! CCATTTGGAAGGTGCACAGT+TGG + chr8_4:16665548-16665567 None:intergenic 50.0%
CCAACTGTGCACCTTCCAAA+TGG - chr8_4:16665545-16665564 Msa1316360:intron 50.0%
CACCTTCCAAATGGGTGGAT+TGG - chr8_4:16665554-16665573 Msa1316360:intron 50.0%
AGCCAATCCACCCATTTGGA+AGG + chr8_4:16665559-16665578 None:intergenic 50.0%
!! TTCCAAATGGGTGGATTGGC+TGG - chr8_4:16665558-16665577 Msa1316360:intron 50.0%
AACCAGCCAATCCACCCATT+TGG + chr8_4:16665563-16665582 None:intergenic 50.0%
TGTTACTGATGGGACCGAAG+AGG + chr8_4:16665604-16665623 None:intergenic 50.0%
TACTTCGGCAAACTTCGGAC+AGG - chr8_4:16665731-16665750 Msa1316360:intron 50.0%
AAGTAAAGCCTCGTCACCTC+CGG + chr8_4:16666110-16666129 None:intergenic 50.0%
TGAGGCAAAGTTGTTCGGGT+AGG + chr8_4:16666302-16666321 None:intergenic 50.0%
AGATGTTGGCCACAGTGACT+CGG - chr8_4:16666622-16666641 Msa1316360:intron 50.0%
! TGACTCGGCAACAGAGATGA+TGG - chr8_4:16666637-16666656 Msa1316360:intron 50.0%
!! GGAAAAGTACTATGTCGGGG+AGG - chr8_4:16666658-16666677 Msa1316360:intron 50.0%
GGATTGTTCTTAGCTGCTGC+TGG + chr8_4:16666701-16666720 None:intergenic 50.0%
!! CTGGTGCCGTTGCTGATATT+GGG - chr8_4:16666794-16666813 Msa1316360:intron 50.0%
GCGATCTGATGGAGCTGATG+TGG - chr8_4:16662847-16662866 Msa1316360:CDS 55.0%
CCTCGATTGTTGTCACGCTG+CGG - chr8_4:16662870-16662889 Msa1316360:intron 55.0%
TGTCGGATTCCGTGCTTGAC+AGG - chr8_4:16663703-16663722 Msa1316360:intron 55.0%
GATTCCGTGCTTGACAGGTG+AGG - chr8_4:16663708-16663727 Msa1316360:intron 55.0%
CAGCAGTGTCTGTGCTTCAG+AGG + chr8_4:16664753-16664772 None:intergenic 55.0%
AGCACAGACACTGCTGTTGG+TGG - chr8_4:16664757-16664776 Msa1316360:intron 55.0%
GCACAGACACTGCTGTTGGT+GGG - chr8_4:16664758-16664777 Msa1316360:intron 55.0%
CGACATGTGTCAGATGCAGG+TGG - chr8_4:16664817-16664836 Msa1316360:intron 55.0%
CATGTGTCAGATGCAGGTGG+CGG - chr8_4:16664820-16664839 Msa1316360:intron 55.0%
GCAGCGACACTGCAAAGACA+CGG + chr8_4:16665076-16665095 None:intergenic 55.0%
! GTCGTACTGGTGTCTGACAC+CGG - chr8_4:16665151-16665170 Msa1316360:intron 55.0%
! TCGTACTGGTGTCTGACACC+GGG - chr8_4:16665152-16665171 Msa1316360:intron 55.0%
! TGCTGTTGGTGGACATGTCC+CGG + chr8_4:16665173-16665192 None:intergenic 55.0%
AGCAAGGACACTGCTGTTGG+TGG + chr8_4:16665184-16665203 None:intergenic 55.0%
TTGGCGACATGGGAATCAGC+AGG + chr8_4:16665529-16665548 None:intergenic 55.0%
AGGTGCACAGTTGGCGACAT+GGG + chr8_4:16665539-16665558 None:intergenic 55.0%
AAGGTGCACAGTTGGCGACA+TGG + chr8_4:16665540-16665559 None:intergenic 55.0%
CTGTGCACCTTCCAAATGGG+TGG - chr8_4:16665549-16665568 Msa1316360:intron 55.0%
GACCAACGGATCTGCCTCTT+CGG - chr8_4:16665587-16665606 Msa1316360:intron 55.0%
AGTAAAGCCTCGTCACCTCC+GGG + chr8_4:16666109-16666128 None:intergenic 55.0%
TCTCTGTTGCCGAGTCACTG+TGG + chr8_4:16666634-16666653 None:intergenic 55.0%
! AGCTGCTGCTGGAAGAGTGT+TGG + chr8_4:16666690-16666709 None:intergenic 55.0%
CCAATATCAGCAACGGCACC+AGG + chr8_4:16666796-16666815 None:intergenic 55.0%
!! CCTGGTGCCGTTGCTGATAT+TGG - chr8_4:16666793-16666812 Msa1316360:intron 55.0%
CCGCAGCGTGACAACAATCG+AGG + chr8_4:16662873-16662892 None:intergenic 60.0%
!! TGCTGTTGGTGGGCTTGTCC+CGG - chr8_4:16664768-16664787 Msa1316360:intron 60.0%
GTACGACACGTGCCAGATGC+AGG + chr8_4:16665138-16665157 None:intergenic 60.0%
GCATCTGGCACGTGTCGTAC+TGG - chr8_4:16665138-16665157 Msa1316360:intron 60.0%
TGGGGGACTTCGGCACATCA+TGG - chr8_4:16665409-16665428 Msa1316360:intron 60.0%
GACCGAAGAGGCAGATCCGT+TGG + chr8_4:16665592-16665611 None:intergenic 60.0%
TGATCATCCCGGAGGTGACG+AGG - chr8_4:16666099-16666118 Msa1316360:intron 60.0%
!! TGGTGGGCTTGTCCCGGTGT+CGG - chr8_4:16664774-16664793 Msa1316360:intron 65.0%
TCTGACGCGTGTCCGACACC+GGG + chr8_4:16664789-16664808 None:intergenic 65.0%
GTCTGACGCGTGTCCGACAC+CGG + chr8_4:16664790-16664809 None:intergenic 65.0%
GTCGGACACGCGTCAGACAC+CGG - chr8_4:16664792-16664811 Msa1316360:intron 65.0%
CACGTGCCAGATGCAGGTGG+CGG + chr8_4:16665132-16665151 None:intergenic 65.0%
CGACACGTGCCAGATGCAGG+TGG + chr8_4:16665135-16665154 None:intergenic 65.0%
GGGACACCGCCACCTGCATC+TGG - chr8_4:16665123-16665142 Msa1316360:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 16662250 16667233 16662250 ID=Msa1316360;Name=Msa1316360
chr8_4 mRNA 16662250 16667233 16662250 ID=Msa1316360-mRNA-1;Parent=Msa1316360;Name=Msa1316360-mRNA-1;_AED=0.03;_eAED=0.03;_QI=90|0.66|0.75|1|0.33|0.75|4|362|133
chr8_4 exon 16662250 16662886 16662250 ID=Msa1316360-mRNA-1:exon:6221;Parent=Msa1316360-mRNA-1
chr8_4 exon 16663371 16663410 16663371 ID=Msa1316360-mRNA-1:exon:6220;Parent=Msa1316360-mRNA-1
chr8_4 exon 16666898 16666993 16666898 ID=Msa1316360-mRNA-1:exon:6219;Parent=Msa1316360-mRNA-1
chr8_4 exon 16667153 16667233 16667153 ID=Msa1316360-mRNA-1:exon:6218;Parent=Msa1316360-mRNA-1
chr8_4 five_prime_UTR 16667153 16667233 16667153 ID=Msa1316360-mRNA-1:five_prime_utr;Parent=Msa1316360-mRNA-1
chr8_4 five_prime_UTR 16666985 16666993 16666985 ID=Msa1316360-mRNA-1:five_prime_utr;Parent=Msa1316360-mRNA-1
chr8_4 CDS 16666898 16666984 16666898 ID=Msa1316360-mRNA-1:cds;Parent=Msa1316360-mRNA-1
chr8_4 CDS 16663371 16663410 16663371 ID=Msa1316360-mRNA-1:cds;Parent=Msa1316360-mRNA-1
chr8_4 CDS 16662612 16662886 16662612 ID=Msa1316360-mRNA-1:cds;Parent=Msa1316360-mRNA-1
chr8_4 three_prime_UTR 16662250 16662611 16662250 ID=Msa1316360-mRNA-1:three_prime_utr;Parent=Msa1316360-mRNA-1
Gene Sequence

>Msa1316360

ATGGGTTCAAAATCAGAGACTTTAACCTTTGAGGATGTGGCTAAGCACAATAACAAGAACGATTGCTGGATCATAGTCAACAAAAAGGTATATGATGTTACCCCATTTTTGGATGATCATCCCGGAGGGAAGGATGCTACCACCGATTTTGAAGATGTTGGCCACAGTGACTCGGCAACAGAGATGATGGAAAAGTACTATGTCGGGGAGGTTGACGCCAACACTCTTCCAGCAGCAGCTAAGAACAATCCAACAGCACCAATTCAAGCATCTACCATAAGCAGCAATCAATCTTCTGGAGTTTTGTTGAAGTTCTTGCAGTACCTGGTGCCGTTGCTGATATTGGGATCTGCATTTGCTCTTCAGTACTATGGAAAAAGAAGCAAGTCCAATGAATCTTAA

Protein sequence

>Msa1316360

MGSKSETLTFEDVAKHNNKNDCWIIVNKKVYDVTPFLDDHPGGKDATTDFEDVGHSDSATEMMEKYYVGEVDANTLPAAAKNNPTAPIQASTISSNQSSGVLLKFLQYLVPLLILGSAFALQYYGKRSKSNES*