Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025630 | sp|Q9SJL9|XTH32_ARATH | 81.100 | 291 | 55 | 0 | 5 | 295 | 8 | 298 | 1.03e-180 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025630 | Msa0110970 | 0.808043 | 3.760096e-50 | -8.615850e-47 |
| Msa0025630 | Msa0345330 | 0.803178 | 3.945183e-49 | -8.615850e-47 |
| Msa0025630 | Msa0422850 | 0.843334 | 1.493843e-58 | -8.615850e-47 |
| Msa0025630 | Msa0422930 | 0.841032 | 6.074291e-58 | -8.615850e-47 |
| Msa0025630 | Msa0513160 | 0.806093 | 9.722397e-50 | -8.615850e-47 |
| Msa0025630 | Msa0527860 | 0.816960 | 4.223353e-52 | -8.615850e-47 |
| Msa0025630 | Msa0574890 | 0.834640 | 2.666116e-56 | -8.615850e-47 |
| Msa0025630 | Msa0582450 | 0.818734 | 1.679268e-52 | -8.615850e-47 |
| Msa0025630 | Msa0586190 | 0.820394 | 7.021558e-53 | -8.615850e-47 |
| Msa0025630 | Msa0625630 | 0.807782 | 4.271775e-50 | -8.615850e-47 |
| Msa0025630 | Msa0663300 | 0.813071 | 3.081586e-51 | -8.615850e-47 |
| Msa0025630 | Msa0664060 | 0.806378 | 8.468524e-50 | -8.615850e-47 |
| Msa0025630 | Msa0930780 | 0.813480 | 2.505632e-51 | -8.615850e-47 |
| Msa0025630 | Msa0948290 | 0.811422 | 7.057111e-51 | -8.615850e-47 |
| Msa0025630 | Msa1047980 | 0.805613 | 1.226764e-49 | -8.615850e-47 |
| Msa0025630 | Msa1236100 | 0.812891 | 3.373856e-51 | -8.615850e-47 |
| Msa0025630 | Msa1445190 | 0.806176 | 9.341609e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025630 | MtrunA17_Chr1g0180451 | 98.986 | 296 | 3 | 0 | 1 | 296 | 1 | 296 | 0.0 | 613 |
| Msa0025630 | MtrunA17_Chr7g0264731 | 82.818 | 291 | 50 | 0 | 6 | 296 | 3 | 293 | 0.0 | 518 |
| Msa0025630 | MtrunA17_Chr4g0028221 | 69.204 | 289 | 89 | 0 | 6 | 294 | 16 | 304 | 1.93e-153 | 431 |
| Msa0025630 | MtrunA17_Chr2g0327411 | 64.145 | 304 | 98 | 2 | 2 | 294 | 6 | 309 | 1.21e-143 | 406 |
| Msa0025630 | MtrunA17_Chr1g0161951 | 40.604 | 298 | 156 | 7 | 5 | 294 | 7 | 291 | 1.14e-69 | 219 |
| Msa0025630 | MtrunA17_Chr8g0365231 | 37.134 | 307 | 176 | 6 | 1 | 294 | 8 | 310 | 3.01e-65 | 207 |
| Msa0025630 | MtrunA17_Chr8g0375981 | 39.799 | 299 | 153 | 8 | 6 | 294 | 9 | 290 | 3.13e-65 | 207 |
| Msa0025630 | MtrunA17_Chr5g0410621 | 38.182 | 275 | 155 | 4 | 32 | 294 | 34 | 305 | 1.79e-61 | 198 |
| Msa0025630 | MtrunA17_Chr1g0206681 | 38.745 | 271 | 147 | 8 | 35 | 294 | 29 | 291 | 7.88e-61 | 195 |
| Msa0025630 | MtrunA17_Chr3g0096651 | 41.636 | 269 | 139 | 7 | 34 | 294 | 24 | 282 | 6.03e-60 | 192 |
| Msa0025630 | MtrunA17_Chr7g0258911 | 39.245 | 265 | 144 | 6 | 39 | 294 | 23 | 279 | 1.53e-58 | 189 |
| Msa0025630 | MtrunA17_Chr8g0377841 | 40.076 | 262 | 141 | 6 | 39 | 294 | 30 | 281 | 4.53e-58 | 187 |
| Msa0025630 | MtrunA17_Chr4g0072611 | 38.868 | 265 | 145 | 7 | 39 | 294 | 24 | 280 | 7.52e-58 | 187 |
| Msa0025630 | MtrunA17_Chr7g0252631 | 36.486 | 296 | 156 | 9 | 8 | 294 | 15 | 287 | 1.10e-57 | 187 |
| Msa0025630 | MtrunA17_Chr5g0443391 | 41.597 | 238 | 125 | 6 | 61 | 294 | 51 | 278 | 1.11e-57 | 187 |
| Msa0025630 | MtrunA17_Chr7g0252621 | 37.500 | 280 | 143 | 9 | 24 | 294 | 31 | 287 | 3.20e-57 | 186 |
| Msa0025630 | MtrunA17_Chr6g0486581 | 38.760 | 258 | 139 | 6 | 48 | 294 | 34 | 283 | 4.27e-57 | 185 |
| Msa0025630 | MtrunA17_Chr4g0072601 | 40.310 | 258 | 133 | 7 | 48 | 294 | 36 | 283 | 5.75e-57 | 185 |
| Msa0025630 | MtrunA17_Chr3g0122031 | 40.152 | 264 | 141 | 6 | 37 | 294 | 25 | 277 | 1.40e-56 | 184 |
| Msa0025630 | MtrunA17_Chr3g0122021 | 40.152 | 264 | 141 | 6 | 37 | 294 | 25 | 277 | 1.72e-56 | 183 |
| Msa0025630 | MtrunA17_Chr7g0252601 | 38.722 | 266 | 142 | 8 | 40 | 294 | 32 | 287 | 8.70e-56 | 182 |
| Msa0025630 | MtrunA17_Chr4g0071341 | 37.132 | 272 | 152 | 7 | 34 | 294 | 18 | 281 | 2.00e-55 | 181 |
| Msa0025630 | MtrunA17_Chr4g0023961 | 38.583 | 254 | 133 | 5 | 48 | 286 | 35 | 280 | 3.58e-55 | 180 |
| Msa0025630 | MtrunA17_Chr6g0461761 | 37.879 | 264 | 147 | 7 | 40 | 294 | 32 | 287 | 9.78e-55 | 179 |
| Msa0025630 | MtrunA17_Chr4g0072671 | 37.410 | 278 | 153 | 6 | 30 | 294 | 16 | 285 | 1.14e-54 | 179 |
| Msa0025630 | MtrunA17_Chr2g0323161 | 36.000 | 275 | 153 | 5 | 35 | 294 | 20 | 286 | 1.15e-54 | 179 |
| Msa0025630 | MtrunA17_Chr1g0206081 | 36.397 | 272 | 146 | 8 | 39 | 294 | 34 | 294 | 4.45e-54 | 177 |
| Msa0025630 | MtrunA17_Chr2g0299061 | 36.667 | 270 | 132 | 7 | 39 | 286 | 25 | 277 | 6.11e-54 | 177 |
| Msa0025630 | MtrunA17_Chr6g0461731 | 37.500 | 264 | 148 | 7 | 40 | 294 | 55 | 310 | 1.39e-53 | 177 |
| Msa0025630 | MtrunA17_Chr8g0382041 | 36.727 | 275 | 150 | 7 | 35 | 294 | 29 | 294 | 6.83e-51 | 171 |
| Msa0025630 | MtrunA17_Chr4g0054431 | 36.194 | 268 | 154 | 7 | 36 | 294 | 28 | 287 | 7.01e-50 | 167 |
| Msa0025630 | MtrunA17_Chr4g0054451 | 36.194 | 268 | 154 | 7 | 36 | 294 | 30 | 289 | 7.56e-50 | 167 |
| Msa0025630 | MtrunA17_Chr4g0072681 | 39.823 | 226 | 116 | 6 | 81 | 294 | 26 | 243 | 2.92e-49 | 164 |
| Msa0025630 | MtrunA17_Chr8g0389641 | 35.878 | 262 | 115 | 7 | 39 | 294 | 28 | 242 | 1.01e-47 | 160 |
| Msa0025630 | MtrunA17_Chr8g0340001 | 39.912 | 228 | 115 | 6 | 69 | 286 | 8 | 223 | 2.00e-47 | 158 |
| Msa0025630 | MtrunA17_Chr7g0235541 | 40.741 | 216 | 109 | 9 | 87 | 294 | 3 | 207 | 4.51e-39 | 136 |
| Msa0025630 | MtrunA17_Chr8g0390201 | 40.609 | 197 | 93 | 7 | 113 | 294 | 22 | 209 | 5.04e-39 | 136 |
| Msa0025630 | MtrunA17_Chr2g0303861 | 32.353 | 272 | 154 | 12 | 37 | 296 | 26 | 279 | 1.89e-36 | 131 |
| Msa0025630 | MtrunA17_Chr2g0303721 | 30.483 | 269 | 155 | 11 | 35 | 294 | 25 | 270 | 1.34e-32 | 121 |
| Msa0025630 | MtrunA17_Chr8g0350711 | 33.333 | 174 | 99 | 6 | 65 | 234 | 59 | 219 | 9.08e-15 | 72.0 |
| Msa0025630 | MtrunA17_Chr4g0072641 | 38.211 | 123 | 61 | 6 | 176 | 294 | 37 | 148 | 1.22e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025630 | AT2G36870.1 | 81.100 | 291 | 55 | 0 | 5 | 295 | 8 | 298 | 0.0 | 503 |
| Msa0025630 | AT3G44990.1 | 64.746 | 295 | 101 | 2 | 1 | 294 | 1 | 293 | 1.09e-138 | 393 |
| Msa0025630 | AT2G36870.2 | 79.532 | 171 | 35 | 0 | 5 | 175 | 8 | 178 | 8.60e-100 | 290 |
| Msa0025630 | AT1G10550.1 | 35.714 | 308 | 171 | 6 | 6 | 294 | 10 | 309 | 6.77e-65 | 206 |
| Msa0025630 | AT1G14720.1 | 39.405 | 269 | 152 | 5 | 34 | 294 | 25 | 290 | 2.22e-64 | 206 |
| Msa0025630 | AT4G14130.1 | 41.791 | 268 | 134 | 7 | 39 | 294 | 27 | 284 | 6.41e-64 | 203 |
| Msa0025630 | AT1G32170.1 | 40.441 | 272 | 147 | 5 | 34 | 294 | 26 | 293 | 8.07e-62 | 199 |
| Msa0025630 | AT5G57550.1 | 38.246 | 285 | 154 | 6 | 7 | 286 | 6 | 273 | 8.49e-62 | 197 |
| Msa0025630 | AT2G01850.1 | 40.152 | 264 | 147 | 5 | 39 | 294 | 30 | 290 | 3.78e-61 | 197 |
| Msa0025630 | AT5G57530.1 | 40.370 | 270 | 142 | 8 | 35 | 294 | 22 | 282 | 1.63e-60 | 194 |
| Msa0025630 | AT3G23730.1 | 39.852 | 271 | 142 | 7 | 37 | 294 | 24 | 286 | 6.63e-60 | 193 |
| Msa0025630 | AT1G11545.1 | 37.500 | 312 | 151 | 10 | 2 | 294 | 13 | 299 | 2.56e-58 | 189 |
| Msa0025630 | AT5G57540.1 | 40.000 | 265 | 142 | 8 | 39 | 294 | 25 | 281 | 7.48e-58 | 187 |
| Msa0025630 | AT4G18990.1 | 37.324 | 284 | 150 | 6 | 34 | 294 | 34 | 312 | 1.86e-57 | 189 |
| Msa0025630 | AT5G57560.1 | 39.483 | 271 | 142 | 9 | 37 | 294 | 20 | 281 | 3.10e-57 | 186 |
| Msa0025630 | AT4G25810.1 | 40.000 | 270 | 141 | 9 | 37 | 294 | 23 | 283 | 2.65e-56 | 183 |
| Msa0025630 | AT4G30290.1 | 44.681 | 235 | 107 | 7 | 69 | 294 | 56 | 276 | 2.96e-56 | 183 |
| Msa0025630 | AT3G25050.1 | 36.466 | 266 | 153 | 5 | 38 | 295 | 33 | 290 | 3.04e-56 | 183 |
| Msa0025630 | AT4G25820.1 | 41.729 | 266 | 136 | 9 | 39 | 294 | 29 | 285 | 3.11e-56 | 183 |
| Msa0025630 | AT5G48070.1 | 37.377 | 305 | 146 | 10 | 2 | 294 | 10 | 281 | 3.27e-56 | 183 |
| Msa0025630 | AT5G13870.2 | 33.887 | 301 | 171 | 7 | 1 | 294 | 8 | 287 | 4.14e-56 | 183 |
| Msa0025630 | AT5G13870.1 | 33.887 | 301 | 171 | 7 | 1 | 294 | 8 | 287 | 4.14e-56 | 183 |
| Msa0025630 | AT5G13870.3 | 33.887 | 301 | 171 | 7 | 1 | 294 | 8 | 287 | 4.14e-56 | 183 |
| Msa0025630 | AT4G30280.1 | 44.681 | 235 | 107 | 7 | 69 | 294 | 61 | 281 | 1.05e-55 | 182 |
| Msa0025630 | AT1G65310.1 | 44.589 | 231 | 113 | 7 | 69 | 294 | 61 | 281 | 1.85e-55 | 181 |
| Msa0025630 | AT1G65310.2 | 44.589 | 231 | 113 | 7 | 69 | 294 | 83 | 303 | 3.21e-55 | 181 |
| Msa0025630 | AT4G30270.1 | 38.662 | 269 | 140 | 8 | 32 | 294 | 16 | 265 | 4.60e-55 | 179 |
| Msa0025630 | AT4G03210.1 | 36.194 | 268 | 140 | 5 | 35 | 286 | 24 | 276 | 1.37e-54 | 179 |
| Msa0025630 | AT4G37800.1 | 38.806 | 268 | 147 | 6 | 36 | 294 | 30 | 289 | 5.23e-54 | 177 |
| Msa0025630 | AT2G14620.1 | 35.762 | 302 | 167 | 10 | 4 | 294 | 9 | 294 | 9.28e-54 | 177 |
| Msa0025630 | AT4G13080.1 | 35.216 | 301 | 175 | 7 | 1 | 294 | 4 | 291 | 1.16e-53 | 177 |
| Msa0025630 | AT5G65730.1 | 35.235 | 298 | 160 | 8 | 6 | 294 | 17 | 290 | 1.21e-53 | 177 |
| Msa0025630 | AT2G06850.1 | 38.267 | 277 | 146 | 9 | 31 | 294 | 26 | 290 | 4.66e-53 | 175 |
| Msa0025630 | AT2G18800.1 | 36.803 | 269 | 140 | 8 | 48 | 294 | 36 | 296 | 1.78e-52 | 174 |
| Msa0025630 | AT4G13090.1 | 36.333 | 300 | 164 | 7 | 5 | 294 | 6 | 288 | 7.10e-52 | 172 |
| Msa0025630 | AT2G06850.2 | 40.336 | 238 | 119 | 8 | 68 | 294 | 5 | 230 | 3.48e-50 | 166 |
| Msa0025630 | AT4G03210.2 | 36.800 | 250 | 124 | 6 | 61 | 294 | 25 | 256 | 3.70e-49 | 164 |
| Msa0025630 | AT2G14620.2 | 37.872 | 235 | 129 | 7 | 69 | 294 | 18 | 244 | 5.38e-49 | 163 |
| Msa0025630 | AT4G28850.1 | 35.581 | 267 | 152 | 5 | 40 | 294 | 29 | 287 | 2.72e-48 | 163 |
| Msa0025630 | AT2G14620.3 | 37.991 | 229 | 125 | 7 | 75 | 294 | 13 | 233 | 1.60e-47 | 159 |
| Msa0025630 | AT4G18990.2 | 38.208 | 212 | 105 | 5 | 104 | 294 | 32 | 238 | 6.26e-42 | 146 |
| Msa0025630 | AT3G48580.1 | 34.082 | 267 | 133 | 10 | 42 | 294 | 36 | 273 | 8.30e-40 | 140 |
| Msa0025630 | AT3G48580.3 | 34.034 | 238 | 119 | 8 | 68 | 294 | 4 | 214 | 2.55e-36 | 129 |
| Msa0025630 | AT3G48580.2 | 29.963 | 267 | 124 | 11 | 42 | 294 | 36 | 253 | 2.10e-24 | 99.4 |
Find 104 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGTAAAGTGAATAAATT+TGG | 0.094868 | 1_1:-48985820 | Msa0025630:three_prime_UTR |
| CTAAGACCAATGTGGGTTTA+TGG | 0.178750 | 1_1:-48986133 | Msa0025630:CDS |
| CTTCCTTGGGTACCTCCTTA+TGG | 0.183924 | 1_1:+48986174 | None:intergenic |
| TTTATGTAATGTTTCTCTTT+TGG | 0.190680 | 1_1:-48985659 | Msa0025630:three_prime_UTR |
| GGCCACCTTCCCCTGGTTAC+TGG | 0.192690 | 1_1:-48987998 | Msa0025630:CDS |
| ACTATTGCCAAGATCCTAAA+AGG | 0.237364 | 1_1:-48985883 | Msa0025630:CDS |
| TGTGGGTTTATGGTTCTATC+TGG | 0.242094 | 1_1:-48986123 | Msa0025630:CDS |
| ATCAACATGGAACAACAATT+TGG | 0.259205 | 1_1:-48987899 | Msa0025630:CDS |
| TTCCTTGGGTACCTCCTTAT+GGG | 0.266893 | 1_1:+48986175 | None:intergenic |
| TTCATCACTATGCTATAGTT+TGG | 0.290387 | 1_1:-48987250 | Msa0025630:CDS |
| ATTGTAAAGTGAATAAATTT+GGG | 0.292679 | 1_1:-48985819 | Msa0025630:three_prime_UTR |
| GAATAAATTTGGGGATGATT+TGG | 0.292944 | 1_1:-48985809 | Msa0025630:three_prime_UTR |
| CAATGGTTATAGAAACCTTT+GGG | 0.298310 | 1_1:-48987943 | Msa0025630:CDS |
| AAGATTTAACCCCAACATTC+AGG | 0.298689 | 1_1:+48985845 | None:intergenic |
| ACATTTGTCTGCAAAGTATA+AGG | 0.303238 | 1_1:+48987353 | None:intergenic |
| GAAGTAGACATTGAATTTCT+AGG | 0.341397 | 1_1:-48987392 | Msa0025630:CDS |
| AAGTTACCTACCTTTGTTCA+TGG | 0.344414 | 1_1:-48988084 | Msa0025630:exon |
| CAGACAAATGTTTATATAAG+AGG | 0.361231 | 1_1:-48987341 | Msa0025630:CDS |
| TAGACTAACACCTGAATGTT+GGG | 0.370136 | 1_1:-48985855 | Msa0025630:CDS |
| AACAATGTACAGATTCTTAG+TGG | 0.388025 | 1_1:-48986206 | Msa0025630:intron |
| GAATTTCTAGGGACAACATT+TGG | 0.388283 | 1_1:-48987380 | Msa0025630:CDS |
| TTCCATGTTGATCCATGCTT+TGG | 0.388299 | 1_1:+48987910 | None:intergenic |
| AATGTTGCATCACTCTTCCT+TGG | 0.393842 | 1_1:+48986160 | None:intergenic |
| CTCCATCAAGCAATGCCTAT+TGG | 0.402610 | 1_1:-48988019 | Msa0025630:CDS |
| GTGACTTACATTAATTCCTT+AGG | 0.405222 | 1_1:+48987224 | None:intergenic |
| ACAATGGTTATAGAAACCTT+TGG | 0.410802 | 1_1:-48987944 | Msa0025630:CDS |
| AACATTCAGGTGTTAGTCTA+TGG | 0.416142 | 1_1:+48985858 | None:intergenic |
| TTTGTGTACTTTGCAACAAA+AGG | 0.422740 | 1_1:+48986043 | None:intergenic |
| TACTCAGTGAAAGGTGCATA+TGG | 0.429327 | 1_1:+48988175 | None:intergenic |
| TAAACCCACATTGGTCTTAG+TGG | 0.431879 | 1_1:+48986136 | None:intergenic |
| GGCCAATAGGCATTGCTTGA+TGG | 0.432918 | 1_1:+48988017 | None:intergenic |
| CCATTTCGATCGGGATACTT+TGG | 0.438416 | 1_1:-48987621 | Msa0025630:CDS |
| CGGCCACGGCCTCGCCGTAT+CGG | 0.441815 | 1_1:-48985973 | Msa0025630:CDS |
| GCCTATTGGCCACCTTCCCC+TGG | 0.450220 | 1_1:-48988005 | Msa0025630:CDS |
| ACAACATTGGTCTATGAGTT+GGG | 0.459656 | 1_1:-48985930 | Msa0025630:CDS |
| CCAAAGTATCCCGATCGAAA+TGG | 0.463082 | 1_1:+48987621 | None:intergenic |
| ACCAGGGGAAGGTGGCCAAT+AGG | 0.463800 | 1_1:+48988004 | None:intergenic |
| GTGCATATGGAAGAAGAGTA+TGG | 0.464426 | 1_1:+48988188 | None:intergenic |
| AACAACATTGGTCTATGAGT+TGG | 0.476903 | 1_1:-48985931 | Msa0025630:CDS |
| ATGTTGCATCACTCTTCCTT+GGG | 0.478571 | 1_1:+48986161 | None:intergenic |
| TCATCATGGGCAACAGAAGA+TGG | 0.483074 | 1_1:-48986094 | Msa0025630:CDS |
| TTGTAACTTGGCCAGTAACC+AGG | 0.483999 | 1_1:+48987987 | None:intergenic |
| TGCGTCGCGTTGGTGTCGTC+CGG | 0.489754 | 1_1:-48985993 | Msa0025630:CDS |
| ACTGGCCAAGTTACAAAGTC+AGG | 0.490063 | 1_1:-48987980 | Msa0025630:CDS |
| TCTAACAATGAAGCGCATCC+AGG | 0.493067 | 1_1:-48987425 | Msa0025630:CDS |
| TCTACTTCATCATGAAATCC+TGG | 0.494735 | 1_1:+48987407 | None:intergenic |
| GCGTTGGTGTCGTCCGGCCA+CGG | 0.495474 | 1_1:-48985987 | Msa0025630:CDS |
| ATTTGGCTTGATAGAACCTC+AGG | 0.506453 | 1_1:-48987882 | Msa0025630:intron |
| ATAACTCCTGCAGTGTAGCC+AGG | 0.507404 | 1_1:+48987579 | None:intergenic |
| GCCTCGCCGTATCGGTCCGG+TGG | 0.507497 | 1_1:-48985965 | Msa0025630:CDS |
| AAGTAGACATTGAATTTCTA+GGG | 0.508075 | 1_1:-48987391 | Msa0025630:CDS |
| ACGGCCTCGCCGTATCGGTC+CGG | 0.518193 | 1_1:-48985968 | Msa0025630:CDS |
| TATATAAGAGGGAGTGGTGA+TGG | 0.520979 | 1_1:-48987329 | Msa0025630:CDS |
| CTTCATCCTGGCTACACTGC+AGG | 0.522870 | 1_1:-48987585 | Msa0025630:CDS |
| CTATCTGGGATGCTTCATCA+TGG | 0.522981 | 1_1:-48986108 | Msa0025630:CDS |
| TAGTGGATGATATGCCCATA+AGG | 0.525035 | 1_1:-48986189 | Msa0025630:CDS |
| GTGGGTTTATGGTTCTATCT+GGG | 0.528303 | 1_1:-48986122 | Msa0025630:CDS |
| CGATACGGCGAGGCCGTGGC+CGG | 0.537351 | 1_1:+48985974 | None:intergenic |
| GTCGAATCGTCCATTTCGAT+CGG | 0.539068 | 1_1:-48987631 | Msa0025630:CDS |
| AATGTTTATATAAGAGGGAG+TGG | 0.539977 | 1_1:-48987335 | Msa0025630:CDS |
| GAGAAATGAAATTTCATCTG+TGG | 0.540326 | 1_1:-48987292 | Msa0025630:CDS |
| AGACAAATGTTTATATAAGA+GGG | 0.545157 | 1_1:-48987340 | Msa0025630:CDS |
| TGATCCATGCTTTGGTGCTG+AGG | 0.547528 | 1_1:+48987918 | None:intergenic |
| TGCTATAGTTTGGAATCCTA+AGG | 0.550228 | 1_1:-48987240 | Msa0025630:CDS |
| TCGAATCGTCCATTTCGATC+GGG | 0.552144 | 1_1:-48987630 | Msa0025630:CDS |
| GGACCGATACGGCGAGGCCG+TGG | 0.552441 | 1_1:+48985970 | None:intergenic |
| ATTTCCACTAAGACCAATGT+GGG | 0.553604 | 1_1:-48986140 | Msa0025630:CDS |
| TGTACTTTGCAACAAAAGGT+TGG | 0.556484 | 1_1:+48986047 | None:intergenic |
| ATAGACTAACACCTGAATGT+TGG | 0.559466 | 1_1:-48985856 | Msa0025630:CDS |
| ATGCTTGTGTGTATAAATGC+AGG | 0.563739 | 1_1:+48988131 | None:intergenic |
| ATAGACCTGACTTTGTAACT+TGG | 0.565331 | 1_1:+48987975 | None:intergenic |
| TTGTAAAGTGAATAAATTTG+GGG | 0.568123 | 1_1:-48985818 | Msa0025630:three_prime_UTR |
| GCACAGCCTATGCGTCGCGT+TGG | 0.570367 | 1_1:-48986003 | Msa0025630:CDS |
| GGCCAGTAACCAGGGGAAGG+TGG | 0.570410 | 1_1:+48987996 | None:intergenic |
| GTCAACCCACCGGACCGATA+CGG | 0.571686 | 1_1:+48985959 | None:intergenic |
| ACGACACCAACGCGACGCAT+AGG | 0.572730 | 1_1:+48985997 | None:intergenic |
| GAAAAGCCATGAACAAAGGT+AGG | 0.576111 | 1_1:+48988078 | None:intergenic |
| TGTAACTTGGCCAGTAACCA+GGG | 0.579562 | 1_1:+48987988 | None:intergenic |
| GGGTCCTCAGCACCAAAGCA+TGG | 0.591378 | 1_1:-48987922 | Msa0025630:CDS |
| CTATTGCCAAGATCCTAAAA+GGG | 0.591532 | 1_1:-48985882 | Msa0025630:CDS |
| GCTTCGATTAAACTTCATCC+TGG | 0.593516 | 1_1:-48987597 | Msa0025630:CDS |
| CCTCGCCGTATCGGTCCGGT+GGG | 0.599396 | 1_1:-48985964 | Msa0025630:CDS |
| TGCCCATAAGGAGGTACCCA+AGG | 0.604081 | 1_1:-48986177 | Msa0025630:CDS |
| CAGGGTGTGTGTGAGAGTGA+TGG | 0.605046 | 1_1:+48988150 | None:intergenic |
| TACACAAACTTCAAAGCTAG+TGG | 0.609014 | 1_1:-48986028 | Msa0025630:CDS |
| TATCTGGGATGCTTCATCAT+GGG | 0.609596 | 1_1:-48986107 | Msa0025630:CDS |
| TTGTTGTCTTGTCAACCCAC+CGG | 0.610498 | 1_1:+48985949 | None:intergenic |
| GTGATGGACTACTCAGTGAA+AGG | 0.620153 | 1_1:+48988166 | None:intergenic |
| TTTGGTGCTGAGGACCCCAA+AGG | 0.620328 | 1_1:+48987928 | None:intergenic |
| TTGGGTTCAAAGACACCACA+TGG | 0.630330 | 1_1:-48985912 | Msa0025630:CDS |
| CACCAAAGCATGGATCAACA+TGG | 0.631601 | 1_1:-48987912 | Msa0025630:CDS |
| AAAGGAAAAGCCATGAACAA+AGG | 0.636067 | 1_1:+48988074 | None:intergenic |
| CTAGCAAAGAGAAATATGAA+AGG | 0.636720 | 1_1:+48988056 | None:intergenic |
| CTTGGCCAGTAACCAGGGGA+AGG | 0.646246 | 1_1:+48987993 | None:intergenic |
| GTAACTTGGCCAGTAACCAG+GGG | 0.650744 | 1_1:+48987989 | None:intergenic |
| GGTTGACAAGACAACAACAT+TGG | 0.653516 | 1_1:-48985943 | Msa0025630:CDS |
| AATGGTTATAGAAACCTTTG+GGG | 0.656393 | 1_1:-48987942 | Msa0025630:CDS |
| CATTTCCACTAAGACCAATG+TGG | 0.658778 | 1_1:-48986141 | Msa0025630:CDS |
| GGCAATAGTTATAAACCATG+TGG | 0.659315 | 1_1:+48985897 | None:intergenic |
| AGACTAACACCTGAATGTTG+GGG | 0.661530 | 1_1:-48985854 | Msa0025630:CDS |
| TGCTTGTGTGTATAAATGCA+GGG | 0.673374 | 1_1:+48988132 | None:intergenic |
| ATAGAACCATAAACCCACAT+TGG | 0.677652 | 1_1:+48986127 | None:intergenic |
| TGGATGATATGCCCATAAGG+AGG | 0.688479 | 1_1:-48986186 | Msa0025630:CDS |
| CCCACCGGACCGATACGGCG+AGG | 0.695099 | 1_1:+48985964 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAAATAAATGAAATAAAA+TGG | + | chr1_1:48986969-48986988 | None:intergenic | 10.0% |
| !! | TTATTTCATTTATTTATCAT+CGG | - | chr1_1:48986971-48986990 | Msa0025630:intron | 10.0% |
| !!! | TATATTTTTTTCAAAGAAAA+TGG | + | chr1_1:48987230-48987249 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATTTCAATCTAA+TGG | - | chr1_1:48987425-48987444 | Msa0025630:CDS | 10.0% |
| !! | GAAACTAATTATATATAATA+AGG | + | chr1_1:48987526-48987545 | None:intergenic | 10.0% |
| !!! | TATTTTTTTAATTTTTCATG+CGG | - | chr1_1:48988117-48988136 | Msa0025630:five_prime_UTR | 10.0% |
| !! | ATAATTAGAAAGAAAAATGT+AGG | + | chr1_1:48986199-48986218 | None:intergenic | 15.0% |
| !!! | CATTTTTCTTTCTAATTATT+AGG | - | chr1_1:48986200-48986219 | Msa0025630:intron | 15.0% |
| !! | TATTGTAAAGTGAATAAATT+TGG | - | chr1_1:48988046-48988065 | Msa0025630:CDS | 15.0% |
| !! | ATTGTAAAGTGAATAAATTT+GGG | - | chr1_1:48988047-48988066 | Msa0025630:CDS | 15.0% |
| !!! | AGTTATTTCCAAAATTACAA+TGG | - | chr1_1:48986103-48986122 | Msa0025630:CDS | 20.0% |
| !!! | AAATGAAGTTGATTAATAGA+AGG | - | chr1_1:48986352-48986371 | Msa0025630:intron | 20.0% |
| !! | AGACAAATGTTTATATAAGA+GGG | - | chr1_1:48986526-48986545 | Msa0025630:intron | 20.0% |
| !! | AAAAATGCAATAATGTAACT+TGG | - | chr1_1:48987090-48987109 | Msa0025630:intron | 20.0% |
| !! | AAAATGCAATAATGTAACTT+GGG | - | chr1_1:48987091-48987110 | Msa0025630:intron | 20.0% |
| !!! | TGACATTTTGTAAAATGAAA+TGG | - | chr1_1:48987188-48987207 | Msa0025630:intron | 20.0% |
| !! | TTCAAAGAAAATGGTATTAT+TGG | + | chr1_1:48987221-48987240 | None:intergenic | 20.0% |
| !! | GGAATCTTACTAATTATAAA+TGG | - | chr1_1:48987463-48987482 | Msa0025630:intron | 20.0% |
| !! | AAAAAAAAATCACTTTCACA+TGG | + | chr1_1:48987572-48987591 | None:intergenic | 20.0% |
| !!! | TGTGAAAGTGATTTTTTTTT+TGG | - | chr1_1:48987572-48987591 | Msa0025630:CDS | 20.0% |
| !! | TTGTAAAGTGAATAAATTTG+GGG | - | chr1_1:48988048-48988067 | Msa0025630:CDS | 20.0% |
| !!! | AAATTTGTGTGTATGATTTT+TGG | - | chr1_1:48988184-48988203 | Msa0025630:five_prime_UTR | 20.0% |
| !!! | TTTATGTAATGTTTCTCTTT+TGG | - | chr1_1:48988207-48988226 | Msa0025630:five_prime_UTR | 20.0% |
| !!! | TTATGTAATGTTTCTCTTTT+GGG | - | chr1_1:48988208-48988227 | Msa0025630:five_prime_UTR | 20.0% |
| ! | TCTATCTACTGGAAAAATTA+CGG | - | chr1_1:48986047-48986066 | Msa0025630:CDS | 25.0% |
| ! | TTAAAGTTTCAGCAAAATCA+TGG | + | chr1_1:48986078-48986097 | None:intergenic | 25.0% |
| ! | TCTTTCTAATTATTAGGAAG+TGG | - | chr1_1:48986206-48986225 | Msa0025630:intron | 25.0% |
| ! | AAGTAGACATTGAATTTCTA+GGG | - | chr1_1:48986475-48986494 | Msa0025630:intron | 25.0% |
| ! | CAGACAAATGTTTATATAAG+AGG | - | chr1_1:48986525-48986544 | Msa0025630:intron | 25.0% |
| !!! | TAGTGATGAAATTTTTTGGT+AGG | + | chr1_1:48986606-48986625 | None:intergenic | 25.0% |
| !!! | AGCATAGTGATGAAATTTTT+TGG | + | chr1_1:48986610-48986629 | None:intergenic | 25.0% |
| ! | GAGACATTTCACTTAATAAA+TGG | - | chr1_1:48986726-48986745 | Msa0025630:intron | 25.0% |
| ! | TGACGATTATTATACTATGT+CGG | + | chr1_1:48986835-48986854 | None:intergenic | 25.0% |
| ! | TTAAATGTGACACTCTTTAA+AGG | + | chr1_1:48986872-48986891 | None:intergenic | 25.0% |
| ! | GAAATAACCACAAGTTTATA+AGG | - | chr1_1:48986926-48986945 | Msa0025630:intron | 25.0% |
| ! | AAACTATCCTTATAAACTTG+TGG | + | chr1_1:48986936-48986955 | None:intergenic | 25.0% |
| ! | TTCAAAAAAGTAGAGCATAT+AGG | - | chr1_1:48987016-48987035 | Msa0025630:intron | 25.0% |
| ! | TCAAAAAAGTAGAGCATATA+GGG | - | chr1_1:48987017-48987036 | Msa0025630:intron | 25.0% |
| ! | TTCAGCAGAAAAAGAAATAT+TGG | + | chr1_1:48987046-48987065 | None:intergenic | 25.0% |
| !! | TTTTTCTGCTGAAACATAAT+AGG | - | chr1_1:48987053-48987072 | Msa0025630:intron | 25.0% |
| !! | TTTTCTGCTGAAACATAATA+GGG | - | chr1_1:48987054-48987073 | Msa0025630:intron | 25.0% |
| !!! | ATTGATTTGTCTGATTCTTA+CGG | - | chr1_1:48987130-48987149 | Msa0025630:intron | 25.0% |
| ! | TTTATTATTCCTTTCGAATC+TGG | - | chr1_1:48987297-48987316 | Msa0025630:CDS | 25.0% |
| ! | TTGACACAACAAATTAAGTT+AGG | - | chr1_1:48988160-48988179 | Msa0025630:five_prime_UTR | 25.0% |
| CTAGCAAAGAGAAATATGAA+AGG | + | chr1_1:48985813-48985832 | None:intergenic | 30.0% | |
| ACAATGGTTATAGAAACCTT+TGG | - | chr1_1:48985922-48985941 | Msa0025630:CDS | 30.0% | |
| CAATGGTTATAGAAACCTTT+GGG | - | chr1_1:48985923-48985942 | Msa0025630:CDS | 30.0% | |
| AATGGTTATAGAAACCTTTG+GGG | - | chr1_1:48985924-48985943 | Msa0025630:CDS | 30.0% | |
| ATCAACATGGAACAACAATT+TGG | - | chr1_1:48985967-48985986 | Msa0025630:CDS | 30.0% | |
| ATTTCCAAAATTACAATGGC+CGG | - | chr1_1:48986107-48986126 | Msa0025630:CDS | 30.0% | |
| GAAGTAGACATTGAATTTCT+AGG | - | chr1_1:48986474-48986493 | Msa0025630:intron | 30.0% | |
| ACATTTGTCTGCAAAGTATA+AGG | + | chr1_1:48986516-48986535 | None:intergenic | 30.0% | |
| AATGTTTATATAAGAGGGAG+TGG | - | chr1_1:48986531-48986550 | Msa0025630:intron | 30.0% | |
| !! | AGTGGTGATGGAAAAATTAT+AGG | - | chr1_1:48986549-48986568 | Msa0025630:intron | 30.0% |
| GAGAAATGAAATTTCATCTG+TGG | - | chr1_1:48986574-48986593 | Msa0025630:intron | 30.0% | |
| TTCATCACTATGCTATAGTT+TGG | - | chr1_1:48986616-48986635 | Msa0025630:intron | 30.0% | |
| GTGACTTACATTAATTCCTT+AGG | + | chr1_1:48986645-48986664 | None:intergenic | 30.0% | |
| ATGTCTCTTATAGTTGAGAT+CGG | + | chr1_1:48986713-48986732 | None:intergenic | 30.0% | |
| ACATTATATGTGGAGAAGTA+GGG | + | chr1_1:48987326-48987345 | None:intergenic | 30.0% | |
| !!! | TTTTTTGTCAGCTAGTTTAG+TGG | + | chr1_1:48987361-48987380 | None:intergenic | 30.0% |
| TCTAATGGTCATGATATTGA+AGG | - | chr1_1:48987440-48987459 | Msa0025630:intron | 30.0% | |
| CTAATGGTCATGATATTGAA+GGG | - | chr1_1:48987441-48987460 | Msa0025630:intron | 30.0% | |
| TAATGGTCATGATATTGAAG+GGG | - | chr1_1:48987442-48987461 | Msa0025630:intron | 30.0% | |
| AACAATGTACAGATTCTTAG+TGG | - | chr1_1:48987660-48987679 | Msa0025630:intron | 30.0% | |
| TTTGTGTACTTTGCAACAAA+AGG | + | chr1_1:48987826-48987845 | None:intergenic | 30.0% | |
| GAATAAATTTGGGGATGATT+TGG | - | chr1_1:48988057-48988076 | Msa0025630:CDS | 30.0% | |
| TGCTTGTGTGTATAAATGCA+GGG | + | chr1_1:48985737-48985756 | None:intergenic | 35.0% | |
| ATGCTTGTGTGTATAAATGC+AGG | + | chr1_1:48985738-48985757 | None:intergenic | 35.0% | |
| AAGTTACCTACCTTTGTTCA+TGG | - | chr1_1:48985782-48985801 | Msa0025630:three_prime_UTR | 35.0% | |
| AAAGGAAAAGCCATGAACAA+AGG | + | chr1_1:48985795-48985814 | None:intergenic | 35.0% | |
| ATAGACCTGACTTTGTAACT+TGG | + | chr1_1:48985894-48985913 | None:intergenic | 35.0% | |
| ! | AGGTCTATGAGCTTTTACAA+TGG | - | chr1_1:48985906-48985925 | Msa0025630:CDS | 35.0% |
| ACTAATCAGATTCATACCTG+AGG | + | chr1_1:48986003-48986022 | None:intergenic | 35.0% | |
| AGTGTAGATACTCTATCTAC+TGG | - | chr1_1:48986036-48986055 | Msa0025630:CDS | 35.0% | |
| ATCTACTGGAAAAATTACGG+TGG | - | chr1_1:48986050-48986069 | Msa0025630:CDS | 35.0% | |
| TTCACGAAATCAAATTGTGC+CGG | + | chr1_1:48986129-48986148 | None:intergenic | 35.0% | |
| TTTGTGCATGTTTGAATTCG+CGG | + | chr1_1:48986157-48986176 | None:intergenic | 35.0% | |
| TCTACTTCATCATGAAATCC+TGG | + | chr1_1:48986462-48986481 | None:intergenic | 35.0% | |
| ! | GAATTTCTAGGGACAACATT+TGG | - | chr1_1:48986486-48986505 | Msa0025630:intron | 35.0% |
| ! | TGCTATAGTTTGGAATCCTA+AGG | - | chr1_1:48986626-48986645 | Msa0025630:intron | 35.0% |
| GTCTGATTCTTACGGAATAT+AGG | - | chr1_1:48987138-48987157 | Msa0025630:intron | 35.0% | |
| CACATTATATGTGGAGAAGT+AGG | + | chr1_1:48987327-48987346 | None:intergenic | 35.0% | |
| GGATTCACACACATTATATG+TGG | + | chr1_1:48987336-48987355 | None:intergenic | 35.0% | |
| GCTGCAATTGTATAATGGTA+TGG | + | chr1_1:48987550-48987569 | None:intergenic | 35.0% | |
| ACATGGCTGCAATTGTATAA+TGG | + | chr1_1:48987555-48987574 | None:intergenic | 35.0% | |
| ATTTCCACTAAGACCAATGT+GGG | - | chr1_1:48987726-48987745 | Msa0025630:intron | 35.0% | |
| ATAGAACCATAAACCCACAT+TGG | + | chr1_1:48987742-48987761 | None:intergenic | 35.0% | |
| TGTACTTTGCAACAAAAGGT+TGG | + | chr1_1:48987822-48987841 | None:intergenic | 35.0% | |
| TACACAAACTTCAAAGCTAG+TGG | - | chr1_1:48987838-48987857 | Msa0025630:intron | 35.0% | |
| ! | AACAACATTGGTCTATGAGT+TGG | - | chr1_1:48987935-48987954 | Msa0025630:CDS | 35.0% |
| ! | ACAACATTGGTCTATGAGTT+GGG | - | chr1_1:48987936-48987955 | Msa0025630:CDS | 35.0% |
| GGCAATAGTTATAAACCATG+TGG | + | chr1_1:48987972-48987991 | None:intergenic | 35.0% | |
| ACTATTGCCAAGATCCTAAA+AGG | - | chr1_1:48987983-48988002 | Msa0025630:CDS | 35.0% | |
| CTATTGCCAAGATCCTAAAA+GGG | - | chr1_1:48987984-48988003 | Msa0025630:CDS | 35.0% | |
| ! | AACATTCAGGTGTTAGTCTA+TGG | + | chr1_1:48988011-48988030 | None:intergenic | 35.0% |
| ATAGACTAACACCTGAATGT+TGG | - | chr1_1:48988010-48988029 | Msa0025630:CDS | 35.0% | |
| TAGACTAACACCTGAATGTT+GGG | - | chr1_1:48988011-48988030 | Msa0025630:CDS | 35.0% | |
| AAGATTTAACCCCAACATTC+AGG | + | chr1_1:48988024-48988043 | None:intergenic | 35.0% | |
| GTGCATATGGAAGAAGAGTA+TGG | + | chr1_1:48985681-48985700 | None:intergenic | 40.0% | |
| ! | TACTCAGTGAAAGGTGCATA+TGG | + | chr1_1:48985694-48985713 | None:intergenic | 40.0% |
| GAAAAGCCATGAACAAAGGT+AGG | + | chr1_1:48985791-48985810 | None:intergenic | 40.0% | |
| TTCCATGTTGATCCATGCTT+TGG | + | chr1_1:48985959-48985978 | None:intergenic | 40.0% | |
| !! | ATTTGGCTTGATAGAACCTC+AGG | - | chr1_1:48985984-48986003 | Msa0025630:CDS | 40.0% |
| GCTTCGATTAAACTTCATCC+TGG | - | chr1_1:48986269-48986288 | Msa0025630:intron | 40.0% | |
| TATATAAGAGGGAGTGGTGA+TGG | - | chr1_1:48986537-48986556 | Msa0025630:intron | 40.0% | |
| CTCTTATAGTTGAGATCGGA+GGG | + | chr1_1:48986709-48986728 | None:intergenic | 40.0% | |
| TCTCTTATAGTTGAGATCGG+AGG | + | chr1_1:48986710-48986729 | None:intergenic | 40.0% | |
| ! | TAGTGGATGATATGCCCATA+AGG | - | chr1_1:48987677-48987696 | Msa0025630:intron | 40.0% |
| ATGTTGCATCACTCTTCCTT+GGG | + | chr1_1:48987708-48987727 | None:intergenic | 40.0% | |
| AATGTTGCATCACTCTTCCT+TGG | + | chr1_1:48987709-48987728 | None:intergenic | 40.0% | |
| CATTTCCACTAAGACCAATG+TGG | - | chr1_1:48987725-48987744 | Msa0025630:intron | 40.0% | |
| !! | TAAACCCACATTGGTCTTAG+TGG | + | chr1_1:48987733-48987752 | None:intergenic | 40.0% |
| CTAAGACCAATGTGGGTTTA+TGG | - | chr1_1:48987733-48987752 | Msa0025630:intron | 40.0% | |
| ! | TGTGGGTTTATGGTTCTATC+TGG | - | chr1_1:48987743-48987762 | Msa0025630:intron | 40.0% |
| ! | GTGGGTTTATGGTTCTATCT+GGG | - | chr1_1:48987744-48987763 | Msa0025630:intron | 40.0% |
| ! | TATCTGGGATGCTTCATCAT+GGG | - | chr1_1:48987759-48987778 | Msa0025630:intron | 40.0% |
| GGTTGACAAGACAACAACAT+TGG | - | chr1_1:48987923-48987942 | Msa0025630:CDS | 40.0% | |
| !!! | TATGGTCCCTTTTAGGATCT+TGG | + | chr1_1:48987993-48988012 | None:intergenic | 40.0% |
| !! | GTTAGTCTATGGTCCCTTTT+AGG | + | chr1_1:48988000-48988019 | None:intergenic | 40.0% |
| AGACTAACACCTGAATGTTG+GGG | - | chr1_1:48988012-48988031 | Msa0025630:CDS | 40.0% | |
| !! | GTGATGGACTACTCAGTGAA+AGG | + | chr1_1:48985703-48985722 | None:intergenic | 45.0% |
| CTCCATCAAGCAATGCCTAT+TGG | - | chr1_1:48985847-48985866 | Msa0025630:exon | 45.0% | |
| TGTAACTTGGCCAGTAACCA+GGG | + | chr1_1:48985881-48985900 | None:intergenic | 45.0% | |
| TTGTAACTTGGCCAGTAACC+AGG | + | chr1_1:48985882-48985901 | None:intergenic | 45.0% | |
| ACTGGCCAAGTTACAAAGTC+AGG | - | chr1_1:48985886-48985905 | Msa0025630:CDS | 45.0% | |
| CACCAAAGCATGGATCAACA+TGG | - | chr1_1:48985954-48985973 | Msa0025630:CDS | 45.0% | |
| !! | TGTGCCGGCCATTGTAATTT+TGG | + | chr1_1:48986114-48986133 | None:intergenic | 45.0% |
| GTCGAATCGTCCATTTCGAT+CGG | - | chr1_1:48986235-48986254 | Msa0025630:intron | 45.0% | |
| TCGAATCGTCCATTTCGATC+GGG | - | chr1_1:48986236-48986255 | Msa0025630:intron | 45.0% | |
| ! | CCAAAGTATCCCGATCGAAA+TGG | + | chr1_1:48986248-48986267 | None:intergenic | 45.0% |
| CCATTTCGATCGGGATACTT+TGG | - | chr1_1:48986245-48986264 | Msa0025630:intron | 45.0% | |
| TCTAACAATGAAGCGCATCC+AGG | - | chr1_1:48986441-48986460 | Msa0025630:intron | 45.0% | |
| GTAGGGAATCCAGATTCGAA+AGG | + | chr1_1:48987309-48987328 | None:intergenic | 45.0% | |
| ! | TTGTCAGCTAGTTTAGTGGC+TGG | + | chr1_1:48987357-48987376 | None:intergenic | 45.0% |
| TGGATGATATGCCCATAAGG+AGG | - | chr1_1:48987680-48987699 | Msa0025630:intron | 45.0% | |
| TTCCTTGGGTACCTCCTTAT+GGG | + | chr1_1:48987694-48987713 | None:intergenic | 45.0% | |
| ! | CTATCTGGGATGCTTCATCA+TGG | - | chr1_1:48987758-48987777 | Msa0025630:intron | 45.0% |
| TCATCATGGGCAACAGAAGA+TGG | - | chr1_1:48987772-48987791 | Msa0025630:intron | 45.0% | |
| TTGTTGTCTTGTCAACCCAC+CGG | + | chr1_1:48987920-48987939 | None:intergenic | 45.0% | |
| TTGGGTTCAAAGACACCACA+TGG | - | chr1_1:48987954-48987973 | Msa0025630:CDS | 45.0% | |
| ! | GGCCAATAGGCATTGCTTGA+TGG | + | chr1_1:48985852-48985871 | None:intergenic | 50.0% |
| GTAACTTGGCCAGTAACCAG+GGG | + | chr1_1:48985880-48985899 | None:intergenic | 50.0% | |
| !! | TGATCCATGCTTTGGTGCTG+AGG | + | chr1_1:48985951-48985970 | None:intergenic | 50.0% |
| ATAACTCCTGCAGTGTAGCC+AGG | + | chr1_1:48986290-48986309 | None:intergenic | 50.0% | |
| TAGTTGAGATCGGAGGGAGT+AGG | + | chr1_1:48986703-48986722 | None:intergenic | 50.0% | |
| CTTCCTTGGGTACCTCCTTA+TGG | + | chr1_1:48987695-48987714 | None:intergenic | 50.0% | |
| CAGGGTGTGTGTGAGAGTGA+TGG | + | chr1_1:48985719-48985738 | None:intergenic | 55.0% | |
| !! | TTTGGTGCTGAGGACCCCAA+AGG | + | chr1_1:48985941-48985960 | None:intergenic | 55.0% |
| CTTCATCCTGGCTACACTGC+AGG | - | chr1_1:48986281-48986300 | Msa0025630:intron | 55.0% | |
| !! | TGCCCATAAGGAGGTACCCA+AGG | - | chr1_1:48987689-48987708 | Msa0025630:intron | 55.0% |
| ACCAGGGGAAGGTGGCCAAT+AGG | + | chr1_1:48985865-48985884 | None:intergenic | 60.0% | |
| CTTGGCCAGTAACCAGGGGA+AGG | + | chr1_1:48985876-48985895 | None:intergenic | 60.0% | |
| GGGTCCTCAGCACCAAAGCA+TGG | - | chr1_1:48985944-48985963 | Msa0025630:CDS | 60.0% | |
| ACGACACCAACGCGACGCAT+AGG | + | chr1_1:48987872-48987891 | None:intergenic | 60.0% | |
| GTCAACCCACCGGACCGATA+CGG | + | chr1_1:48987910-48987929 | None:intergenic | 60.0% | |
| GCCTATTGGCCACCTTCCCC+TGG | - | chr1_1:48985861-48985880 | Msa0025630:CDS | 65.0% | |
| GGCCACCTTCCCCTGGTTAC+TGG | - | chr1_1:48985868-48985887 | Msa0025630:CDS | 65.0% | |
| GGCCAGTAACCAGGGGAAGG+TGG | + | chr1_1:48985873-48985892 | None:intergenic | 65.0% | |
| GCACAGCCTATGCGTCGCGT+TGG | - | chr1_1:48987863-48987882 | Msa0025630:intron | 65.0% | |
| !! | TGCGTCGCGTTGGTGTCGTC+CGG | - | chr1_1:48987873-48987892 | Msa0025630:intron | 65.0% |
| !! | GCGTTGGTGTCGTCCGGCCA+CGG | - | chr1_1:48987879-48987898 | Msa0025630:intron | 70.0% |
| ! | ACGGCCTCGCCGTATCGGTC+CGG | - | chr1_1:48987898-48987917 | Msa0025630:CDS | 70.0% |
| ! | CCTCGCCGTATCGGTCCGGT+GGG | - | chr1_1:48987902-48987921 | Msa0025630:CDS | 70.0% |
| CGATACGGCGAGGCCGTGGC+CGG | + | chr1_1:48987895-48987914 | None:intergenic | 75.0% | |
| CGGCCACGGCCTCGCCGTAT+CGG | - | chr1_1:48987893-48987912 | Msa0025630:CDS | 75.0% | |
| GGACCGATACGGCGAGGCCG+TGG | + | chr1_1:48987899-48987918 | None:intergenic | 75.0% | |
| ! | GCCTCGCCGTATCGGTCCGG+TGG | - | chr1_1:48987901-48987920 | Msa0025630:CDS | 75.0% |
| CCCACCGGACCGATACGGCG+AGG | + | chr1_1:48987905-48987924 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 48985651 | 48988237 | 48985651 | ID=Msa0025630;Name=Msa0025630 |
| chr1_1 | mRNA | 48985651 | 48988237 | 48985651 | ID=Msa0025630-mRNA-1;Parent=Msa0025630;Name=Msa0025630-mRNA-1;_AED=0.19;_eAED=0.19;_QI=150|1|1|1|0.75|0.6|5|172|296 |
| chr1_1 | exon | 48985651 | 48985688 | 48985651 | ID=Msa0025630-mRNA-1:exon:14084;Parent=Msa0025630-mRNA-1 |
| chr1_1 | exon | 48985716 | 48986216 | 48985716 | ID=Msa0025630-mRNA-1:exon:14083;Parent=Msa0025630-mRNA-1 |
| chr1_1 | exon | 48987233 | 48987450 | 48987233 | ID=Msa0025630-mRNA-1:exon:14082;Parent=Msa0025630-mRNA-1 |
| chr1_1 | exon | 48987566 | 48987666 | 48987566 | ID=Msa0025630-mRNA-1:exon:14081;Parent=Msa0025630-mRNA-1 |
| chr1_1 | exon | 48987883 | 48988237 | 48987883 | ID=Msa0025630-mRNA-1:exon:14080;Parent=Msa0025630-mRNA-1 |
| chr1_1 | five_prime_UTR | 48988088 | 48988237 | 48988088 | ID=Msa0025630-mRNA-1:five_prime_utr;Parent=Msa0025630-mRNA-1 |
| chr1_1 | CDS | 48987883 | 48988087 | 48987883 | ID=Msa0025630-mRNA-1:cds;Parent=Msa0025630-mRNA-1 |
| chr1_1 | CDS | 48987566 | 48987666 | 48987566 | ID=Msa0025630-mRNA-1:cds;Parent=Msa0025630-mRNA-1 |
| chr1_1 | CDS | 48987233 | 48987450 | 48987233 | ID=Msa0025630-mRNA-1:cds;Parent=Msa0025630-mRNA-1 |
| chr1_1 | CDS | 48985850 | 48986216 | 48985850 | ID=Msa0025630-mRNA-1:cds;Parent=Msa0025630-mRNA-1 |
| chr1_1 | three_prime_UTR | 48985716 | 48985849 | 48985716 | ID=Msa0025630-mRNA-1:three_prime_utr;Parent=Msa0025630-mRNA-1 |
| chr1_1 | three_prime_UTR | 48985651 | 48985688 | 48985651 | ID=Msa0025630-mRNA-1:three_prime_utr;Parent=Msa0025630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
