AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0031310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031310 MtrunA17_Chr1g0189231 97.051 1085 25 3 1 1079 1 1084 0.0 2177
Msa0031310 MtrunA17_Chr6g0488541 58.708 1068 382 10 32 1048 69 1128 0.0 1294
Msa0031310 MtrunA17_Chr7g0263111 28.753 473 228 17 463 916 61 443 6.12e-43 163
Msa0031310 MtrunA17_Chr8g0375751 26.969 419 223 14 523 917 61 420 1.88e-35 140
Msa0031310 MtrunA17_Chr4g0054951 33.948 271 138 7 603 869 310 543 3.63e-34 139
Msa0031310 MtrunA17_Chr4g0054941 33.210 271 140 7 603 869 310 543 2.24e-33 137
Msa0031310 MtrunA17_Chr6g0479511 25.693 397 209 13 507 865 34 382 4.05e-33 132
Msa0031310 MtrunA17_Chr8g0382571 31.058 293 159 9 580 865 189 445 4.58e-33 134
Msa0031310 MtrunA17_Chr6g0452181 26.376 436 216 13 522 913 56 430 4.90e-33 134
Msa0031310 MtrunA17_Chr1g0201271 29.740 269 145 8 601 865 369 597 1.25e-32 135
Msa0031310 MtrunA17_Chr5g0400311 32.374 278 147 8 596 869 360 600 1.39e-32 135
Msa0031310 MtrunA17_Chr6g0466801 30.855 269 142 8 601 865 367 595 6.95e-32 133
Msa0031310 MtrunA17_Chr1g0165011 25.935 401 197 13 516 865 58 409 3.09e-31 128
Msa0031310 MtrunA17_Chr1g0154491 30.086 349 171 12 516 858 45 326 1.65e-30 124
Msa0031310 MtrunA17_Chr5g0394901 31.839 223 129 4 601 819 352 555 1.43e-29 125
Msa0031310 MtrunA17_Chr1g0205121 33.184 223 126 4 601 819 313 516 1.65e-29 125
Msa0031310 MtrunA17_Chr1g0185281 32.889 225 128 4 599 819 284 489 2.48e-29 124
Msa0031310 MtrunA17_Chr7g0260081 31.752 274 147 7 601 869 286 524 8.07e-29 122
Msa0031310 MtrunA17_Chr8g0355021 26.667 270 155 7 603 865 227 460 6.11e-23 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031310 AT1G65580.1 62.878 1091 367 11 16 1079 22 1101 0.0 1432
Msa0031310 AT2G43900.1 61.339 1001 363 8 68 1048 113 1109 0.0 1313
Msa0031310 AT2G43900.2 59.535 1033 362 9 68 1048 113 1141 0.0 1300
Msa0031310 AT1G05630.2 60.353 1019 375 9 68 1062 105 1118 0.0 1291
Msa0031310 AT1G05630.1 58.405 1053 375 10 68 1062 105 1152 0.0 1273
Msa0031310 AT2G31830.2 56.256 1031 420 9 72 1077 120 1144 0.0 1201
Msa0031310 AT2G31830.1 56.791 1016 408 9 72 1062 120 1129 0.0 1198
Msa0031310 AT1G65580.2 66.427 834 269 3 257 1079 2 835 0.0 1189
Msa0031310 AT1G05630.3 62.406 798 273 8 68 843 105 897 0.0 1045
Msa0031310 AT2G31830.3 59.292 791 295 8 72 841 120 904 0.0 962
Msa0031310 AT2G01900.3 28.571 399 202 13 517 882 61 409 1.65e-36 144
Msa0031310 AT2G01900.1 28.571 399 202 13 517 882 53 401 1.65e-36 144
Msa0031310 AT4G18010.1 34.409 279 142 10 595 869 381 622 4.55e-35 143
Msa0031310 AT3G63240.2 33.798 287 151 7 583 865 259 510 2.72e-34 139
Msa0031310 AT3G63240.1 33.798 287 151 7 583 865 259 510 2.72e-34 139
Msa0031310 AT1G71710.1 30.970 268 142 6 602 865 407 635 2.21e-33 138
Msa0031310 AT1G71710.2 31.086 267 141 6 603 865 399 626 2.57e-33 138
Msa0031310 AT2G01900.2 27.569 399 197 14 517 882 53 392 5.47e-32 130
Msa0031310 AT2G37440.1 27.295 403 191 15 521 874 82 431 7.61e-31 128
Msa0031310 AT2G37440.3 27.295 403 191 15 521 874 82 431 7.61e-31 128
Msa0031310 AT1G34120.5 28.571 266 153 5 602 865 181 411 1.10e-30 127
Msa0031310 AT4G18010.2 35.874 223 117 7 595 813 381 581 2.34e-30 128
Msa0031310 AT1G05470.2 29.304 273 155 6 606 874 352 590 3.34e-30 128
Msa0031310 AT1G05470.1 29.304 273 155 6 606 874 352 590 3.34e-30 128
Msa0031310 AT2G32010.2 31.852 270 144 8 601 865 324 558 4.15e-30 127
Msa0031310 AT2G32010.1 31.852 270 144 8 601 865 324 558 4.15e-30 127
Msa0031310 AT2G32010.4 31.852 270 144 8 601 865 324 558 4.15e-30 127
Msa0031310 AT2G32010.3 31.852 270 144 8 601 865 324 558 4.15e-30 127
Msa0031310 AT1G34120.2 28.571 266 153 5 602 865 336 566 8.38e-30 126
Msa0031310 AT1G34120.1 28.571 266 153 5 602 865 332 562 8.64e-30 126
Msa0031310 AT5G04980.4 29.278 263 151 5 606 865 160 390 1.55e-29 122
Msa0031310 AT5G04980.1 30.038 263 149 6 606 865 195 425 2.43e-29 123
Msa0031310 AT5G04980.3 30.038 263 149 6 606 865 195 425 2.43e-29 123
Msa0031310 AT5G04980.2 30.038 263 149 6 606 865 224 454 2.85e-29 123
Msa0031310 AT1G34120.3 28.947 266 151 6 602 865 336 565 3.13e-29 124
Msa0031310 AT5G65090.2 30.741 270 145 8 602 865 198 431 3.27e-29 123
Msa0031310 AT2G37440.2 26.700 397 202 14 524 876 1 352 4.81e-29 121
Msa0031310 AT5G65090.3 30.741 270 145 8 602 865 261 494 5.62e-29 123
Msa0031310 AT5G65090.1 30.741 270 145 8 602 865 261 494 5.62e-29 123
Msa0031310 AT1G47510.1 28.358 335 166 11 528 858 60 324 6.61e-28 116
Msa0031310 AT1G47510.4 28.782 271 147 7 593 859 35 263 1.23e-27 114
Msa0031310 AT1G47510.2 32.544 169 100 3 692 858 105 261 1.50e-17 84.7
Msa0031310 AT1G34120.4 24.390 164 102 3 602 763 332 475 8.61e-13 72.4

Find 315 sgRNAs with CRISPR-Local

Find 709 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTACTTATGGAATGCAAATT+TGG 0.128312 1_1:+58032138 Msa0031310:CDS
GTTGCTTCTAACAAATATTT+TGG 0.129585 1_1:+58038154 Msa0031310:three_prime_UTR
GCCTTCAATGCAAGACTTTC+CGG 0.167686 1_1:+58031839 Msa0031310:CDS
CCGCCTTTGGCGATGAATTC+AGG 0.183076 1_1:-58028219 None:intergenic
TATGGTAGATAGACATTTAC+AGG 0.212201 1_1:-58038039 None:intergenic
TTTGATTGCTGAATGCAATT+TGG 0.216266 1_1:+58035294 Msa0031310:CDS
CTGACCTTGTTTCAAGTTCT+AGG 0.242223 1_1:+58031862 Msa0031310:CDS
CATCAGTTGAGAGGTTCTTT+TGG 0.255502 1_1:+58036478 Msa0031310:CDS
AAATAGTCACTCACCTTAAT+TGG 0.255905 1_1:-58037764 None:intergenic
TTTGTACTTATGATAGTTTC+AGG 0.256838 1_1:-58036325 None:intergenic
TCAATCACAATCACTTCTTA+TGG 0.266530 1_1:+58028666 Msa0031310:CDS
GGAAAATCCAGTGGCATGTT+AGG 0.267644 1_1:+58038089 Msa0031310:three_prime_UTR
CTGAACGTGGACTACGGTTC+TGG 0.269605 1_1:+58028394 Msa0031310:CDS
CGCTCACGTAATGCCATAAT+GGG 0.269882 1_1:+58031921 Msa0031310:CDS
GGTTCAACATTTAAACGAAT+TGG 0.286201 1_1:+58032929 Msa0031310:CDS
GAAGATTCGCTGTTGGTATA+TGG 0.288190 1_1:+58028581 Msa0031310:CDS
ATTCAATTCAGAACTGAAAA+TGG 0.292913 1_1:-58027926 None:intergenic
TGGACGTGCTATTGGAAATA+AGG 0.293258 1_1:+58033367 Msa0031310:CDS
CCAGGGAGCTGTTGCTTTGA+GGG 0.296075 1_1:+58034021 Msa0031310:intron
CTCAAGATTCCCTTACTTCA+TGG 0.304893 1_1:+58032441 Msa0031310:CDS
TTCTGCTGGGCAGTGGTGGC+TGG 0.316135 1_1:+58032880 Msa0031310:CDS
TTGCGACCGAGTCGCAATTA+TGG 0.320678 1_1:+58028364 Msa0031310:CDS
GGACTGGAGGGTAGTTCTGC+TGG 0.328570 1_1:+58032866 Msa0031310:CDS
AGCCCTTGAAGCACCAATTA+AGG 0.328669 1_1:+58037751 Msa0031310:exon
TTCCGCGCGATTCGATCTAA+TGG 0.336779 1_1:+58027984 Msa0031310:exon
AGGTTAAATTGAGCTCCTTT+TGG 0.341931 1_1:-58038019 None:intergenic
TATCTCAAAGATGCTTTGAT+TGG 0.343370 1_1:+58034531 Msa0031310:CDS
CACCGTTTCGTGAATCGGTT+TGG 0.344154 1_1:+58028490 Msa0031310:CDS
GATTCCGGCACCGCCGCCTT+TGG 0.348253 1_1:-58028232 None:intergenic
GCGCTCACGTAATGCCATAA+TGG 0.349932 1_1:+58031920 Msa0031310:CDS
TGAGTTTACGGTCGAGGAAT+TGG 0.351414 1_1:-58028173 None:intergenic
GATGTTGGCCTTGTTGTTGT+TGG 0.354509 1_1:+58032482 Msa0031310:CDS
TTCCCTTTCAATTGTAGCTT+CGG 0.354787 1_1:-58038070 None:intergenic
GACTTCGCCGGCGATTTGTT+TGG 0.355477 1_1:+58028512 Msa0031310:CDS
TGTGGCTTTGGACGTGCTAT+TGG 0.356280 1_1:+58033359 Msa0031310:CDS
CAAAATTGCTTCCTTGTCTC+TGG 0.356746 1_1:-58037530 None:intergenic
CCCCTATCAGGTTACCCTTC+AGG 0.357341 1_1:-58032196 None:intergenic
ACCAGGGAGCTGTTGCTTTG+AGG 0.360681 1_1:+58034020 Msa0031310:intron
GCAGCAGTTCCATGTGGCTT+TGG 0.360733 1_1:+58033347 Msa0031310:CDS
AGATAATCTTTCATTAAAAT+CGG 0.362721 1_1:-58028616 None:intergenic
ATTGGATCCAGGCAACTTGC+AGG 0.363077 1_1:+58032947 Msa0031310:CDS
GAGTGCACCGTTTCGTGAAT+CGG 0.364631 1_1:+58028485 Msa0031310:CDS
GTAGCTTCGGCTGTTTAGTA+TGG 0.368059 1_1:-58038057 None:intergenic
GAATCGCGCGGAAAGAATAT+AGG 0.374975 1_1:-58027974 None:intergenic
AAGGCAAAGGTGTGGAGTGC+TGG 0.376191 1_1:+58029859 Msa0031310:CDS
AGCCGTTTGGTTGAGTCAAT+TGG 0.377498 1_1:-58037636 None:intergenic
TAACAATTGATGGAATGATT+TGG 0.380093 1_1:+58032021 Msa0031310:CDS
GTTGTATTTAAGAGGTTTGT+TGG 0.380263 1_1:-58034163 None:intergenic
GCAGACATGATTGTATTTCT+TGG 0.380609 1_1:+58034455 Msa0031310:CDS
CCAATACGGAGACAGGAGTT+TGG 0.381547 1_1:+58036244 Msa0031310:CDS
GGATCAGCTTCGAGCTGAAA+TGG 0.382975 1_1:+58034565 Msa0031310:CDS
CAAACATTAGACTTCATGTT+GGG 0.388130 1_1:+58033312 Msa0031310:CDS
TACTTATGGAATGCAAATTT+GGG 0.388626 1_1:+58032139 Msa0031310:CDS
ATCCAGGCAACTTGCAGGCT+TGG 0.392811 1_1:+58032952 Msa0031310:CDS
GAGAGGAGGTTTGAAGATTC+CGG 0.397056 1_1:-58028247 None:intergenic
CTAGCATCTCATTATTTGCT+TGG 0.399889 1_1:+58038190 Msa0031310:three_prime_UTR
TCACCTTAATTGGTGCTTCA+AGG 0.400676 1_1:-58037754 None:intergenic
GTTGCAGCAAAGGGAGCCTT+TGG 0.401006 1_1:+58031966 Msa0031310:CDS
GCACTTGTAGTAACAATTGA+TGG 0.403616 1_1:+58032011 Msa0031310:CDS
GTTGGTGGAATGAATAGAAT+TGG 0.404222 1_1:-58028130 None:intergenic
AAATGAAGGTCACATATTAT+AGG 0.404304 1_1:-58038249 None:intergenic
TACCAGGTGTTGTATTTAAG+AGG 0.404326 1_1:-58034171 None:intergenic
CCAAACTCCTGTCTCCGTAT+TGG 0.404332 1_1:-58036244 None:intergenic
AGGATATTCAAGTGGCTTGC+TGG 0.410437 1_1:+58032046 Msa0031310:CDS
GAAAGAACCCAATGGAACTT+TGG 0.414866 1_1:-58031896 None:intergenic
GACCTGAAGGGTAACCTGAT+AGG 0.415830 1_1:+58032194 Msa0031310:CDS
TGAACGACACCAAGCTGGTT+TGG 0.418007 1_1:+58034652 Msa0031310:CDS
AGTCTGATCGATTCTCCATT+TGG 0.418680 1_1:-58031815 None:intergenic
AAATGGAGAGACCGAGCGTT+TGG 0.419384 1_1:-58027909 None:intergenic
CGACACCAAGCTGGTTTGGC+AGG 0.421696 1_1:+58034656 Msa0031310:CDS
CATTTAAACGAATTGGATCC+AGG 0.422554 1_1:+58032936 Msa0031310:CDS
GGTCTTATAATACCAGTTGC+AGG 0.424170 1_1:-58037412 None:intergenic
ATGTATATTGTATTAAATGA+AGG 0.425127 1_1:-58038263 None:intergenic
CGCCTTTGGCGATGAATTCA+GGG 0.428684 1_1:-58028218 None:intergenic
GGTCGGAGATAGTGAGTTTA+CGG 0.428899 1_1:-58028185 None:intergenic
ATCGCCAAAGGCGGCGGTGC+CGG 0.430167 1_1:+58028228 Msa0031310:CDS
AAGATGAAGAAGCGTCGTTT+TGG 0.432240 1_1:-58028017 None:intergenic
CAGAACCTAGCCATGAAGTA+AGG 0.432253 1_1:-58032451 None:intergenic
TGTAGCCATTTGTAGATAGC+TGG 0.435365 1_1:-58029789 None:intergenic
TGGTTGCGGATGAAGGGAAT+AGG 0.437115 1_1:+58028532 Msa0031310:CDS
GACCAAGCCTGCAAGTTGCC+TGG 0.438966 1_1:-58032954 None:intergenic
CCCTTACGCGAGACTCAGAT+TGG 0.440816 1_1:+58028321 Msa0031310:CDS
GCTTTGATTGGCTTAGAGAA+AGG 0.443441 1_1:+58034543 Msa0031310:CDS
ATTTGTTTGGTTGCGGATGA+AGG 0.446369 1_1:+58028525 Msa0031310:CDS
ATGTTGGCCTTGTTGTTGTT+GGG 0.447214 1_1:+58032483 Msa0031310:CDS
CTTCGAGCTGAAATGGAAGC+TGG 0.447564 1_1:+58034572 Msa0031310:CDS
CTTTGATTGGCTTAGAGAAA+GGG 0.447830 1_1:+58034544 Msa0031310:CDS
GTCTGGCATTGTCCAGGTAT+TGG 0.451126 1_1:+58032172 Msa0031310:CDS
ACTCAGGAAGAGTTTGTTGA+TGG 0.451219 1_1:+58037478 Msa0031310:CDS
GCTTCTATTCCAATGTTTCG+TGG 0.453642 1_1:+58034303 Msa0031310:CDS
GACTGGAGGGTAGTTCTGCT+GGG 0.455784 1_1:+58032867 Msa0031310:CDS
AATCGCGCGGAAAGAATATA+GGG 0.457226 1_1:-58027973 None:intergenic
ACCTGAAGGGTAACCTGATA+GGG 0.459789 1_1:+58032195 Msa0031310:CDS
GGCTATGCAATTTATGCAGC+TGG 0.463431 1_1:-58037732 None:intergenic
TACACTTCCTTGGACGTGCC+TGG 0.464196 1_1:-58037659 None:intergenic
GGTTCTGTGGCCTCAGATGT+TGG 0.464990 1_1:+58032467 Msa0031310:CDS
GACAGAAGCCAAAGTTCCAT+TGG 0.468814 1_1:+58031888 Msa0031310:CDS
GTGATTGTGATTGAAAGAAC+AGG 0.470082 1_1:-58028657 None:intergenic
TGCAATACTGAAGAGACAAC+AGG 0.470288 1_1:-58035322 None:intergenic
CTGAGTCTCGCGTAAGGGAT+GGG 0.470537 1_1:-58028316 None:intergenic
TCCAATCTGAGTCTCGCGTA+AGG 0.471792 1_1:-58028322 None:intergenic
ATTTGGGTAGGTTATGTGTC+TGG 0.472737 1_1:+58032155 Msa0031310:CDS
GAGGTTTGTTGGTCGACTAA+AGG 0.473639 1_1:-58034152 None:intergenic
GATACCTCAATAATCTGATC+TGG 0.475261 1_1:-58037433 None:intergenic
TGGGTTGCAAGAGGTTGAAA+TGG 0.476153 1_1:+58032502 Msa0031310:CDS
GCCGGAAAGTCTTGCATTGA+AGG 0.477110 1_1:-58031840 None:intergenic
GTAGTTCTGCTGGGCAGTGG+TGG 0.477422 1_1:+58032876 Msa0031310:CDS
TGGACGTGCCTGGAGCCGTT+TGG 0.477930 1_1:-58037649 None:intergenic
ATCGGTGAAGTACACTTCCT+TGG 0.480038 1_1:-58037669 None:intergenic
TTACTGCTTCACGCATTCCT+TGG 0.480387 1_1:-58034604 None:intergenic
AGGGTAGTTCTGCTGGGCAG+TGG 0.482882 1_1:+58032873 Msa0031310:CDS
TACGCAAAATTAATGTGTCC+TGG 0.486489 1_1:-58036366 None:intergenic
TGAAACGTCGTCGTTGTCGT+TGG 0.487718 1_1:-58028103 None:intergenic
GATTCCCTTACTTCATGGCT+AGG 0.488496 1_1:+58032446 Msa0031310:CDS
AAGTGGCTTGCTGGTGCAAT+GGG 0.491693 1_1:+58032055 Msa0031310:CDS
CACCTTAATTGGTGCTTCAA+GGG 0.491787 1_1:-58037753 None:intergenic
TGATCTAGGGGATCTGTGGT+CGG 0.492661 1_1:+58029642 Msa0031310:intron
TATAGGAAGTCATTAACAAA+TGG 0.494459 1_1:-58038232 None:intergenic
CAAGAGGTTGAAATGGGCGC+TGG 0.495167 1_1:+58032509 Msa0031310:CDS
TTGAGTGGCACTTGGAATGT+TGG 0.495567 1_1:+58032404 Msa0031310:CDS
TGATACCATTTAATTCCAAA+AGG 0.496544 1_1:+58038004 Msa0031310:three_prime_UTR
GATCTAGGGGATCTGTGGTC+GGG 0.497803 1_1:+58029643 Msa0031310:intron
TACTTCATGGCTAGGTTCTG+TGG 0.497882 1_1:+58032454 Msa0031310:CDS
GAAAATCCAGTGGCATGTTA+GGG 0.499054 1_1:+58038090 Msa0031310:three_prime_UTR
CTGTGGTCGGGTTCAGAAGG+AGG 0.499297 1_1:+58029655 Msa0031310:CDS
TACCCTTCAGGTCCAATACC+TGG 0.500021 1_1:-58032184 None:intergenic
AGGAGGACGGGAAGGATGTA+CGG 0.500575 1_1:-58028277 None:intergenic
TTTCAATTCAGATGGCCAAA+TGG 0.500882 1_1:+58031800 Msa0031310:CDS
AGATGAACCAATACGGAGAC+AGG 0.503011 1_1:+58036237 Msa0031310:CDS
CGAAGGGCAGACTACTGTAC+TGG 0.503492 1_1:+58036435 Msa0031310:CDS
TGCTTCACGCATTCCTTGGA+AGG 0.504405 1_1:-58034600 None:intergenic
TGACTCAACCAAACGGCTCC+AGG 0.504665 1_1:+58037641 Msa0031310:CDS
GTCGACTAAAGGACATTGTT+CGG 0.507124 1_1:-58034141 None:intergenic
TTATGTGTCTGGCATTGTCC+AGG 0.507537 1_1:+58032166 Msa0031310:CDS
AAAAGAAACGCATCCCTGCC+TGG 0.507732 1_1:+58035236 Msa0031310:CDS
GCCGGCGATTTGTTTGGTTG+CGG 0.507926 1_1:+58028518 Msa0031310:CDS
CTCAAGCATATAGGTAGGAC+TGG 0.508609 1_1:+58032850 Msa0031310:intron
ATTGATGGAATGATTTGGAC+AGG 0.509230 1_1:+58032026 Msa0031310:CDS
GTCCAAACCGATTCACGAAA+CGG 0.513271 1_1:-58028492 None:intergenic
ATTCAGGTAAGTCCTGCAAC+TGG 0.514095 1_1:+58037400 Msa0031310:intron
GATCTGTATGCGTCGTGGTA+CGG 0.515404 1_1:+58028426 Msa0031310:CDS
TGGATTGCCTAGGTGGCTTG+AGG 0.516378 1_1:+58036498 Msa0031310:CDS
ACAGAAGCCAAAGTTCCATT+GGG 0.516885 1_1:+58031889 Msa0031310:CDS
GTGTCGTTCAAACTTGTATG+TGG 0.518152 1_1:-58034639 None:intergenic
GCTGCACATTTAGATGCAGT+TGG 0.519575 1_1:+58034088 Msa0031310:CDS
TTGCGACTCGGTCGCAACAA+TGG 0.519963 1_1:-58028358 None:intergenic
AGGCAAAGGTGTGGAGTGCT+GGG 0.521311 1_1:+58029860 Msa0031310:CDS
GCAATCGAGACGGCGGTTGG+TGG 0.521437 1_1:-58028145 None:intergenic
AGGAGCCAGCTATCTACAAA+TGG 0.521693 1_1:+58029784 Msa0031310:CDS
GAATTCATCGCCAAAGGCGG+CGG 0.522449 1_1:+58028222 Msa0031310:CDS
GTTCGCCGAGTTGCAGCAAA+GGG 0.522989 1_1:+58031957 Msa0031310:CDS
TGGAAATGGCAATCGCATAC+AGG 0.523350 1_1:+58032079 Msa0031310:CDS
AGACCGAGCGTTTGGACAGA+AGG 0.523471 1_1:-58027901 None:intergenic
TGTGGTCGGGTTCAGAAGGA+GGG 0.527175 1_1:+58029656 Msa0031310:CDS
GGATGGAACATCACCTCTCC+AGG 0.527747 1_1:+58032305 Msa0031310:CDS
GAGCCTTTGGAGATGAGAAT+CGG 0.527887 1_1:+58031979 Msa0031310:CDS
ATTGGTTTCCAGCCTGCAGA+AGG 0.529588 1_1:+58034413 Msa0031310:intron
TCGTGGTACGGTGGAGAAGT+AGG 0.529824 1_1:+58028438 Msa0031310:CDS
CATGCAATCGAGACGGCGGT+TGG 0.529843 1_1:-58028148 None:intergenic
TAAAGATCTTGAGTGGCACT+TGG 0.530907 1_1:+58032396 Msa0031310:CDS
AAAATTCTGTCACACCAGGC+AGG 0.533000 1_1:-58035250 None:intergenic
ATCAGATAATTCAAAGGCAA+AGG 0.533635 1_1:+58029846 Msa0031310:CDS
CCAATCTGAGTCTCGCGTAA+GGG 0.533674 1_1:-58028321 None:intergenic
AACTCAGGTATCCCTTCTGC+AGG 0.534161 1_1:-58034425 None:intergenic
AAGACCAGATCAGATTATTG+AGG 0.534380 1_1:+58037429 Msa0031310:CDS
CAAAAGAACCTCTCAACTGA+TGG 0.535254 1_1:-58036477 None:intergenic
TTTGTTTGGTTGCGGATGAA+GGG 0.535744 1_1:+58028526 Msa0031310:CDS
TGCAACTCGGCGAACAGCAT+CGG 0.536199 1_1:-58031949 None:intergenic
AGCCGAAGCTACAATTGAAA+GGG 0.536884 1_1:+58038068 Msa0031310:three_prime_UTR
TTCGAGCTGAAATGGAAGCT+GGG 0.537932 1_1:+58034573 Msa0031310:CDS
TTATGGTCTGCGACTGAACG+TGG 0.538492 1_1:+58028381 Msa0031310:CDS
GTGTGGAGTGGACATAGAGA+TGG 0.538655 1_1:+58028558 Msa0031310:CDS
GGAAAGAATATAGGGAGTAT+TGG 0.542260 1_1:-58027965 None:intergenic
ACATTTGTACCACGAAACAT+TGG 0.542372 1_1:-58034312 None:intergenic
CAGCCGAAGCTACAATTGAA+AGG 0.544158 1_1:+58038067 Msa0031310:three_prime_UTR
ACTTCATGTTGGGGATGTTG+AGG 0.544204 1_1:+58033322 Msa0031310:CDS
TCTGAGTCTCGCGTAAGGGA+TGG 0.544937 1_1:-58028317 None:intergenic
TATAAGAAAGTGCGTTGTTG+AGG 0.545101 1_1:-58028057 None:intergenic
CAAGTGGCTTGCTGGTGCAA+TGG 0.545187 1_1:+58032054 Msa0031310:CDS
AAAATGCTATCAAGAGGTCC+TGG 0.545545 1_1:-58032323 None:intergenic
GGGAATAGGTTGGTGTGGAG+TGG 0.545958 1_1:+58028546 Msa0031310:CDS
AACCAATTGACTCAACCAAA+CGG 0.548151 1_1:+58037634 Msa0031310:CDS
TACTGTACTGGAGGATCAGA+AGG 0.550107 1_1:+58036447 Msa0031310:CDS
ACAAACATTAGACTTCATGT+TGG 0.550962 1_1:+58033311 Msa0031310:CDS
GCCAACCTGCCAAACCAGCT+TGG 0.551445 1_1:-58034661 None:intergenic
ATGGTGTTGTACAAAACTCT+TGG 0.551451 1_1:+58037497 Msa0031310:CDS
CTCCCTGAATTCATCGCCAA+AGG 0.551588 1_1:+58028216 Msa0031310:CDS
TGAGGGTTAGAGTGTATGAT+CGG 0.553134 1_1:+58034038 Msa0031310:CDS
GATCTGTGGTCGGGTTCAGA+AGG 0.553223 1_1:+58029652 Msa0031310:CDS
AGCATATAGGTAGGACTGGA+GGG 0.554205 1_1:+58032854 Msa0031310:intron
CTGCGACTGAACGTGGACTA+CGG 0.554270 1_1:+58028388 Msa0031310:CDS
TTGTGGTTGAACTTGAATCA+TGG 0.554273 1_1:+58037931 Msa0031310:three_prime_UTR
GAACTTGAAACAAGGTCAGC+CGG 0.555555 1_1:-58031858 None:intergenic
TGAATTCAGGGAGAGGGAGG+TGG 0.559758 1_1:-58028206 None:intergenic
TATGGAATGCAAATTTGGGT+AGG 0.560889 1_1:+58032143 Msa0031310:CDS
TGAGTCTCGCGTAAGGGATG+GGG 0.561019 1_1:-58028315 None:intergenic
TGTCCAGGTATTGGACCTGA+AGG 0.561084 1_1:+58032181 Msa0031310:CDS
AATATTACCTCAAGCCACCT+AGG 0.562574 1_1:-58036505 None:intergenic
TGCGGATGAAGGGAATAGGT+TGG 0.563513 1_1:+58028536 Msa0031310:CDS
GGGTTGCAAGAGGTTGAAAT+GGG 0.564094 1_1:+58032503 Msa0031310:CDS
AGATAGTGAGTTTACGGTCG+AGG 0.564361 1_1:-58028179 None:intergenic
AAATTCTGTCACACCAGGCA+GGG 0.567856 1_1:-58035249 None:intergenic
GAAGCTGGGAATGCCTTCCA+AGG 0.568907 1_1:+58034587 Msa0031310:CDS
TCATGAGGAATTTCAGACTC+AGG 0.570956 1_1:+58037462 Msa0031310:CDS
AACGGCTCCAGGCACGTCCA+AGG 0.571832 1_1:+58037652 Msa0031310:CDS
ACTATCTGTGACATCCATGC+AGG 0.573452 1_1:-58036167 None:intergenic
GGCTTGCTGGTGCAATGGGA+TGG 0.573848 1_1:+58032059 Msa0031310:CDS
TACGCGAGACTCAGATTGGA+CGG 0.573930 1_1:+58028325 Msa0031310:CDS
AGATGCAGCGCACAGGCTTG+TGG 0.573980 1_1:-58036192 None:intergenic
CTGTATGCGTCGTGGTACGG+TGG 0.574593 1_1:+58028429 Msa0031310:CDS
TTGTTCGAAATAATTTGCGA+AGG 0.574719 1_1:+58036418 Msa0031310:CDS
TAAAGGGCCACAAACGTCGT+CGG 0.575235 1_1:-58038326 None:intergenic
CAACTGCCCTAACATGCCAC+TGG 0.575265 1_1:-58038096 None:intergenic
TTCATCTGACAGAGGAGGAA+AGG 0.575700 1_1:+58029719 Msa0031310:CDS
TGAATCGGTTTGGACTTCGC+CGG 0.576063 1_1:+58028500 Msa0031310:CDS
TGTTCGCCGAGTTGCAGCAA+AGG 0.576318 1_1:+58031956 Msa0031310:CDS
CTCGAGTAGATGAACCAATA+CGG 0.576561 1_1:+58036230 Msa0031310:CDS
TAATTCGAGAGAAGGAGGAC+GGG 0.576986 1_1:-58028289 None:intergenic
GTGGAGAAGTAGGTGGTGTG+AGG 0.577805 1_1:+58028448 Msa0031310:CDS
AACCTCTTAAATACAACACC+TGG 0.578781 1_1:+58034169 Msa0031310:CDS
GTAGAAAAGATGCAGCGCAC+AGG 0.579203 1_1:-58036199 None:intergenic
ATGAAGGGAATAGGTTGGTG+TGG 0.579410 1_1:+58028541 Msa0031310:CDS
ATAGACAAAACACTGGATGA+AGG 0.579738 1_1:+58032908 Msa0031310:CDS
GGATGTACGGCGGCGCGGAG+AGG 0.580045 1_1:-58028264 None:intergenic
TCGAGAGAAGGAGGACGGGA+AGG 0.581232 1_1:-58028285 None:intergenic
CAATAGGTACGAAGCCTGCA+TGG 0.582129 1_1:+58036153 Msa0031310:intron
TGGCGATGAATTCAGGGAGA+GGG 0.582484 1_1:-58028212 None:intergenic
GGTGGAATGAATAGAATTGG+AGG 0.583925 1_1:-58028127 None:intergenic
CTGGTGCAATGGGATGGAAA+TGG 0.584105 1_1:+58032065 Msa0031310:CDS
CGCAGACCATAATTGCGACT+CGG 0.585355 1_1:-58028370 None:intergenic
GAACACAAAATGCTATCAAG+AGG 0.585696 1_1:-58032329 None:intergenic
TGTTGTTGTTGGGTTGCAAG+AGG 0.587409 1_1:+58032493 Msa0031310:CDS
AGAACCTAGCCATGAAGTAA+GGG 0.587761 1_1:-58032450 None:intergenic
TGTACGGCGGCGCGGAGAGG+AGG 0.588332 1_1:-58028261 None:intergenic
GTCGTTGGAAGAAGAAGAAG+AGG 0.591232 1_1:-58028088 None:intergenic
GATTTGATCTAGGGGATCTG+TGG 0.591401 1_1:+58029638 Msa0031310:intron
TCCGCAACCAAACAAATCGC+CGG 0.591927 1_1:-58028519 None:intergenic
TTCAGGGAGAGGGAGGTGGT+CGG 0.592018 1_1:-58028202 None:intergenic
ATACCTTCTGTCCAAACGCT+CGG 0.592553 1_1:+58027898 Msa0031310:five_prime_UTR
AAGTTTGAACGACACCAAGC+TGG 0.593721 1_1:+58034647 Msa0031310:CDS
CGATGAATTCAGGGAGAGGG+AGG 0.594579 1_1:-58028209 None:intergenic
ACCACGGTGGCATACGAGGA+TGG 0.594620 1_1:+58032288 Msa0031310:CDS
CTTTCCTAGAACTTGAAACA+AGG 0.597016 1_1:-58031866 None:intergenic
ATCTATTCATCTGACAGAGG+AGG 0.599412 1_1:+58029714 Msa0031310:CDS
TTTGAGCAATTCATTTGATG+TGG 0.599823 1_1:+58037705 Msa0031310:CDS
CTTAGTATCAGATAATTCAA+AGG 0.599990 1_1:+58029840 Msa0031310:CDS
AGGCTCCCTTTGCTGCAACT+CGG 0.603078 1_1:-58031962 None:intergenic
CAACATAATTCTTCAAAACC+AGG 0.604281 1_1:+58036348 Msa0031310:CDS
TTGGCGATGAATTCAGGGAG+AGG 0.604449 1_1:-58028213 None:intergenic
CCTGAATTCATCGCCAAAGG+CGG 0.604862 1_1:+58028219 Msa0031310:CDS
ATGTCTGCCTCAGATAACTC+AGG 0.605077 1_1:-58034440 None:intergenic
GGGAAGGATGTACGGCGGCG+CGG 0.607719 1_1:-58028269 None:intergenic
ATTTGGACAGGATATTCAAG+TGG 0.608816 1_1:+58032038 Msa0031310:CDS
TGTTCGAAATAATTTGCGAA+GGG 0.608875 1_1:+58036419 Msa0031310:CDS
TCATGTTGGGGATGTTGAGG+CGG 0.609394 1_1:+58033325 Msa0031310:CDS
TCTCCGATTCTCATCTCCAA+AGG 0.609708 1_1:-58031982 None:intergenic
AAGCATATAGGTAGGACTGG+AGG 0.611789 1_1:+58032853 Msa0031310:intron
GAAGTAGGTGGTGTGAGGAG+TGG 0.614026 1_1:+58028453 Msa0031310:CDS
AGTTGGCTATGTATTCACAT+TGG 0.614806 1_1:+58032262 Msa0031310:CDS
AACATTGAACAGCAAATGGG+TGG 0.615120 1_1:-58032112 None:intergenic
TGGGGACGTAATTCGAGAGA+AGG 0.616003 1_1:-58028297 None:intergenic
GAAAACATAAAGATCTTGAG+TGG 0.619660 1_1:+58032389 Msa0031310:CDS
CCTGAAGGGTAACCTGATAG+GGG 0.619748 1_1:+58032196 Msa0031310:CDS
AGAGATCCTACGTTGACTTG+AGG 0.621762 1_1:+58029764 Msa0031310:CDS
AACAGTGGTGAACACGCACT+CGG 0.622597 1_1:-58037597 None:intergenic
TGTGGAGTGGACATAGAGAT+GGG 0.622977 1_1:+58028559 Msa0031310:CDS
GCTAACCACGGTGGCATACG+AGG 0.623769 1_1:+58032284 Msa0031310:CDS
CAGGCTTGGTCATTGCTGTG+TGG 0.625182 1_1:+58032966 Msa0031310:CDS
GGATATGATAGACAAAACAC+TGG 0.627351 1_1:+58032901 Msa0031310:CDS
CGTTCAAACTTGTATGTGGG+AGG 0.627825 1_1:-58034635 None:intergenic
GAGATGGGAAGATTCGCTGT+TGG 0.628267 1_1:+58028574 Msa0031310:CDS
GTAATTCGAGAGAAGGAGGA+CGG 0.628813 1_1:-58028290 None:intergenic
CTTGCAACCCAACAACAACA+AGG 0.629793 1_1:-58032490 None:intergenic
GTACAGAGAAAGCAAATGCA+AGG 0.630958 1_1:+58037967 Msa0031310:three_prime_UTR
TAAAATAAAGTGTGCCAGCG+TGG 0.631179 1_1:+58027845 None:intergenic
TGTCGTTCAAACTTGTATGT+GGG 0.634355 1_1:-58034638 None:intergenic
GGACGTAATTCGAGAGAAGG+AGG 0.635159 1_1:-58028294 None:intergenic
GACAGAGGAGGAAAGGCACA+AGG 0.636905 1_1:+58029726 Msa0031310:CDS
GTGTGAAGACTCCAGAGACA+AGG 0.636970 1_1:+58037519 Msa0031310:CDS
GGCACTTGGAATGTTGGACA+AGG 0.645154 1_1:+58032410 Msa0031310:CDS
AACAACAAGGCCAACATCTG+AGG 0.646340 1_1:-58032477 None:intergenic
CATGTTGTGACGAACCACGC+TGG 0.648750 1_1:-58027859 None:intergenic
AAACATTAGACTTCATGTTG+GGG 0.649582 1_1:+58033313 Msa0031310:CDS
GTCCAGGTATTGGACCTGAA+GGG 0.651295 1_1:+58032182 Msa0031310:CDS
GCAACAAACCATCAGTTGAG+AGG 0.652514 1_1:+58036469 Msa0031310:CDS
GCTCACGTAATGCCATAATG+GGG 0.653820 1_1:+58031922 Msa0031310:CDS
ATAATTCAAAGGCAAAGGTG+TGG 0.656062 1_1:+58029851 Msa0031310:CDS
GAGGCGGCAGCAGTTCCATG+TGG 0.658265 1_1:+58033341 Msa0031310:CDS
AGGGCAGACTACTGTACTGG+AGG 0.659691 1_1:+58036438 Msa0031310:CDS
ATAGCACGTCCAAAGCCACA+TGG 0.663632 1_1:-58033356 None:intergenic
TTAAAGATCTGTATGCGTCG+TGG 0.664733 1_1:+58028421 Msa0031310:CDS
TGGTACGGTGGAGAAGTAGG+TGG 0.665391 1_1:+58028441 Msa0031310:CDS
TGAGGTATCAGTGCATCATG+AGG 0.665545 1_1:+58037447 Msa0031310:CDS
ATACAAAATTCTGTCACACC+AGG 0.668595 1_1:-58035254 None:intergenic
TTGGTTTCCAGCCTGCAGAA+GGG 0.670134 1_1:+58034414 Msa0031310:intron
AGGGATACCTGAGTTATCTG+AGG 0.671277 1_1:+58034433 Msa0031310:CDS
AATTGAAAGGGAAAATCCAG+TGG 0.673658 1_1:+58038080 Msa0031310:three_prime_UTR
AAAATCTATTCATCTGACAG+AGG 0.675320 1_1:+58029711 Msa0031310:CDS
GTATTCACATTGGCTAACCA+CGG 0.676920 1_1:+58032272 Msa0031310:CDS
CTCACGTAATGCCATAATGG+GGG 0.677397 1_1:+58031923 Msa0031310:CDS
GCTATCAAGAGGTCCTGGAG+AGG 0.678266 1_1:-58032318 None:intergenic
TCAAACGTTGAAAATCAGAT+CGG 0.678275 1_1:-58037687 None:intergenic
ATTGGAGCATGCAATCGAGA+CGG 0.679008 1_1:-58028155 None:intergenic
CTGGCTCCTCAAGTCAACGT+AGG 0.684792 1_1:-58029770 None:intergenic
GTGGTCGGGTTCAGAAGGAG+GGG 0.685407 1_1:+58029657 Msa0031310:CDS
TCCATCCTCGTATGCCACCG+TGG 0.685454 1_1:-58032289 None:intergenic
TGAGCGCTGAAAGAACCCAA+TGG 0.689656 1_1:-58031904 None:intergenic
GCAATACTGAAGAGACAACA+GGG 0.696256 1_1:-58035321 None:intergenic
GGAGCATGCAATCGAGACGG+CGG 0.701657 1_1:-58028152 None:intergenic
TGTTGAGGAGTAGACGACAG+TGG 0.706369 1_1:-58028042 None:intergenic
CTGAAGGGTAACCTGATAGG+GGG 0.706991 1_1:+58032197 Msa0031310:CDS
TTATCTTGGCAAGCTCATCG+TGG 0.720020 1_1:+58028633 Msa0031310:CDS
ATCCATTAGATCGAATCGCG+CGG 0.726055 1_1:-58027986 None:intergenic
TTCACATTGGCTAACCACGG+TGG 0.730525 1_1:+58032275 Msa0031310:CDS
AGGACGGGAAGGATGTACGG+CGG 0.758417 1_1:-58028274 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATAATTTATAAATTTTT+AGG - chr1_1:58031108-58031127 None:intergenic 0.0%
!! AAAAAAAAATAAAAAATATT+GGG - chr1_1:58033896-58033915 None:intergenic 0.0%
!! TAAAAAAAAATAAAAAATAT+TGG - chr1_1:58033897-58033916 None:intergenic 0.0%
!! AAAATGAATAAAATTCAAAT+AGG + chr1_1:58030264-58030283 Msa0031310:intron 10.0%
!! AAATGAATAAAATTCAAATA+GGG + chr1_1:58030265-58030284 Msa0031310:intron 10.0%
!! ATTTAATAATGTGAAAAAAT+AGG - chr1_1:58030518-58030537 None:intergenic 10.0%
!!! ATTTATCTAAAATTATACTA+TGG + chr1_1:58031123-58031142 Msa0031310:intron 10.0%
!!! TTTATCTAAAATTATACTAT+GGG + chr1_1:58031124-58031143 Msa0031310:intron 10.0%
!! GTTATAGAATAAATATATAT+TGG + chr1_1:58033061-58033080 Msa0031310:intron 10.0%
!!! AATTTAATTTTTCATTCTTT+TGG + chr1_1:58035025-58035044 Msa0031310:intron 10.0%
!!! ATTTAATTTTTCATTCTTTT+GGG + chr1_1:58035026-58035045 Msa0031310:intron 10.0%
!! AAAAAATTTAAAGAAAAAGA+TGG - chr1_1:58036106-58036125 None:intergenic 10.0%
!!! ACTATTTTGTTTTATTATTT+TGG + chr1_1:58037780-58037799 Msa0031310:intron 10.0%
!!! TAAAAGATTTTACATTTAAA+GGG - chr1_1:58038345-58038364 None:intergenic 10.0%
!! AGATAATCTTTCATTAAAAT+CGG - chr1_1:58028619-58028638 None:intergenic 15.0%
!!! ATTTTAATGAAAGATTATCT+TGG + chr1_1:58028619-58028638 Msa0031310:CDS 15.0%
!!! ATATTTAGACTATTTTTGTT+AGG + chr1_1:58030036-58030055 Msa0031310:intron 15.0%
!!! TATTTAGACTATTTTTGTTA+GGG + chr1_1:58030037-58030056 Msa0031310:intron 15.0%
!! TTAATAAAATCTCTCATTTA+TGG - chr1_1:58031009-58031028 None:intergenic 15.0%
!! CCTATTTATAAGAAAAAATT+AGG - chr1_1:58031305-58031324 None:intergenic 15.0%
!!! CCTAATTTTTTCTTATAAAT+AGG + chr1_1:58031302-58031321 Msa0031310:intron 15.0%
!! ATGTATAAAGATATCATAAA+TGG + chr1_1:58031615-58031634 Msa0031310:intron 15.0%
!! AAAAATACACTTAAATGATT+AGG - chr1_1:58031707-58031726 None:intergenic 15.0%
!!! CTATAATATCAAATGATTTT+AGG - chr1_1:58033654-58033673 None:intergenic 15.0%
!! AATAGAAAAACATATTTACA+AGG + chr1_1:58033706-58033725 Msa0031310:intron 15.0%
!!! AAAACAATATTTTATTCAAG+AGG + chr1_1:58033935-58033954 Msa0031310:intron 15.0%
!! ACGTATAATTATAAATTGAA+TGG + chr1_1:58035075-58035094 Msa0031310:intron 15.0%
!!! TATGAAATGTTTATTTTGAA+GGG + chr1_1:58035200-58035219 Msa0031310:intron 15.0%
!! TTTATATGTTTATTGCATTT+GGG + chr1_1:58035358-58035377 Msa0031310:intron 15.0%
!!! AATGATTTTACATTACAAAT+AGG + chr1_1:58035941-58035960 Msa0031310:intron 15.0%
!!! ATGATTTTACATTACAAATA+GGG + chr1_1:58035942-58035961 Msa0031310:intron 15.0%
!! TAATTATTTATGATTACAGA+AGG + chr1_1:58036558-58036577 Msa0031310:intron 15.0%
!! TGCTAAAAAATTATACATTA+TGG + chr1_1:58036745-58036764 Msa0031310:intron 15.0%
!!! ATTTTGTTTTATTATTTTGG+TGG + chr1_1:58037783-58037802 Msa0031310:intron 15.0%
!!! TTTTTTTCTTTTCTTTTCAT+AGG + chr1_1:58037904-58037923 Msa0031310:intron 15.0%
!!! TTTTTTCTTTTCTTTTCATA+GGG + chr1_1:58037905-58037924 Msa0031310:intron 15.0%
!! ATGTATATTGTATTAAATGA+AGG - chr1_1:58038266-58038285 None:intergenic 15.0%
!! TAAATAATATAAAAAGACCA+TGG + chr1_1:58038285-58038304 Msa0031310:three_prime_UTR 15.0%
!!! TTTTTTTTACTAATAATCCA+TGG - chr1_1:58038305-58038324 None:intergenic 15.0%
!!! CTAAAAGATTTTACATTTAA+AGG - chr1_1:58038346-58038365 None:intergenic 15.0%
!!! TTAAATGTAAAATCTTTTAG+TGG + chr1_1:58038346-58038365 Msa0031310:three_prime_UTR 15.0%
!!! ACAGGAATTTATTTTAATGA+AGG - chr1_1:58029114-58029133 None:intergenic 20.0%
!! ATAACCATAAACTTAGATTT+AGG - chr1_1:58029378-58029397 None:intergenic 20.0%
!!! GTTATTTTACTTACAAAAGT+AGG + chr1_1:58029393-58029412 Msa0031310:intron 20.0%
!! ATAAACATCTATAAGCATAT+AGG - chr1_1:58029421-58029440 None:intergenic 20.0%
!! TATATGCTTATAGATGTTTA+TGG + chr1_1:58029420-58029439 Msa0031310:intron 20.0%
!! GTAATATATGAATGTTAGTA+TGG + chr1_1:58029940-58029959 Msa0031310:intron 20.0%
!! TAAGTCAAGTGATAAAAAAT+AGG + chr1_1:58030459-58030478 Msa0031310:intron 20.0%
!! TAAAAAATAGGAAAGAACTT+AGG + chr1_1:58030471-58030490 Msa0031310:intron 20.0%
!!! AAGCTAAATAGTTTGTAATT+TGG + chr1_1:58030668-58030687 Msa0031310:intron 20.0%
!!! AAATTTAAAACTTCAGTTCA+AGG + chr1_1:58030717-58030736 Msa0031310:intron 20.0%
!!! TCTGAAATGAAATTTTCTTT+TGG + chr1_1:58030862-58030881 Msa0031310:intron 20.0%
!! TTAATCAACAAGCATAAAAA+TGG - chr1_1:58030893-58030912 None:intergenic 20.0%
!! TATTAATCCAACTATTGAAT+TGG + chr1_1:58031023-58031042 Msa0031310:intron 20.0%
!! GGTTATATATATTCAATGAT+TGG + chr1_1:58031155-58031174 Msa0031310:intron 20.0%
!!! TTCAAGTTTCTCTTATAAAT+AGG - chr1_1:58031223-58031242 None:intergenic 20.0%
!!! TTTTTTCTTATAAATAGGAC+CGG + chr1_1:58031307-58031326 Msa0031310:intron 20.0%
!! TATACTATATCCATACATAT+TGG - chr1_1:58031376-58031395 None:intergenic 20.0%
!!! TATATATTGGTTTTTGAAGT+TGG + chr1_1:58033074-58033093 Msa0031310:intron 20.0%
!! TCTTTAATAGTAGATATGTT+AGG + chr1_1:58033466-58033485 Msa0031310:intron 20.0%
!! AAAAATAAAAAATATTGGGG+TGG - chr1_1:58033892-58033911 None:intergenic 20.0%
!!! TTTTACAGAATTTGCTTTTA+AGG + chr1_1:58033912-58033931 Msa0031310:intron 20.0%
!! ATTACTTGAAAAGAATAAAG+TGG - chr1_1:58034351-58034370 None:intergenic 20.0%
!!! TTTTTGATGCTATAGTTTAA+AGG - chr1_1:58034834-58034853 None:intergenic 20.0%
!!! AATATAAACAGCATTTTTTG+TGG - chr1_1:58035120-58035139 None:intergenic 20.0%
!!! GTATGAAATGTTTATTTTGA+AGG + chr1_1:58035199-58035218 Msa0031310:intron 20.0%
!! GTTTATATGTTTATTGCATT+TGG + chr1_1:58035357-58035376 Msa0031310:intron 20.0%
!! AAATTTGCCTTATCAATAAA+GGG - chr1_1:58035475-58035494 None:intergenic 20.0%
!! TAAATTTGCCTTATCAATAA+AGG - chr1_1:58035476-58035495 None:intergenic 20.0%
!! TGTGGGTAAAATATATAATA+TGG + chr1_1:58035762-58035781 Msa0031310:intron 20.0%
!! AAGATTGTGAACAAATATAT+CGG + chr1_1:58036926-58036945 Msa0031310:intron 20.0%
!!! AAACTTGTTTCATTTAGAAA+AGG + chr1_1:58037331-58037350 Msa0031310:intron 20.0%
! ATTCAATTCAGAACTGAAAA+TGG - chr1_1:58027929-58027948 None:intergenic 25.0%
! TGTCAATCAATCAATCATAT+TGG - chr1_1:58028863-58028882 None:intergenic 25.0%
!! CAGTGTAAAACTTTTTATAC+TGG + chr1_1:58028881-58028900 Msa0031310:intron 25.0%
! AATAGTATGATGTCTGATTT+AGG + chr1_1:58029030-58029049 Msa0031310:intron 25.0%
! GAAAAGAAACAAATCCAAAT+TGG - chr1_1:58029057-58029076 None:intergenic 25.0%
! TATAAGCTGTTTATCAAAAC+AGG - chr1_1:58029132-58029151 None:intergenic 25.0%
!!! TTTAGTTTAACTTTTGCTGT+AGG - chr1_1:58029196-58029215 None:intergenic 25.0%
!! TGTTTTCATAAGCTATCTTA+AGG + chr1_1:58029245-58029264 Msa0031310:intron 25.0%
!!! TAAGTTTTGTGAGACTTTTT+TGG - chr1_1:58029327-58029346 None:intergenic 25.0%
!!! GTTAGAAAAGAGAGTTTTTT+TGG + chr1_1:58029447-58029466 Msa0031310:intron 25.0%
!! TTCTTTCTTGATTTGATCTA+GGG + chr1_1:58029629-58029648 Msa0031310:intron 25.0%
! CTTAGTATCAGATAATTCAA+AGG + chr1_1:58029840-58029859 Msa0031310:CDS 25.0%
!! GGTATTTTTCATATGCTTTA+TGG + chr1_1:58029881-58029900 Msa0031310:CDS 25.0%
!! TCATAATTTTTCATATCCTG+TGG + chr1_1:58030004-58030023 Msa0031310:intron 25.0%
! ACTTGATAAGAAGTTTAAAG+TGG + chr1_1:58030085-58030104 Msa0031310:intron 25.0%
!!! TTAAAGTGGAAGTTTTATCT+TGG + chr1_1:58030099-58030118 Msa0031310:intron 25.0%
!!! TAAAGTGGAAGTTTTATCTT+GGG + chr1_1:58030100-58030119 Msa0031310:intron 25.0%
! CTTGTTAAGGATTCAAAAAA+AGG - chr1_1:58030193-58030212 None:intergenic 25.0%
! GTTTCTACACTTAACAAAAA+GGG - chr1_1:58030242-58030261 None:intergenic 25.0%
! AGTTTCTACACTTAACAAAA+AGG - chr1_1:58030243-58030262 None:intergenic 25.0%
!!! TTACACAAATGGTTCTATTT+TGG + chr1_1:58030365-58030384 Msa0031310:intron 25.0%
!!! TACACAAATGGTTCTATTTT+GGG + chr1_1:58030366-58030385 Msa0031310:intron 25.0%
!! ACAGTTTTACCCATAAAATT+AGG - chr1_1:58030576-58030595 None:intergenic 25.0%
!! AAACTGTTTGTGTATTTTGT+AGG + chr1_1:58030589-58030608 Msa0031310:intron 25.0%
! TATCTTAGAGCTTATTCTTT+AGG - chr1_1:58030648-58030667 None:intergenic 25.0%
! TCATTTCAGATACTAGATTA+AGG - chr1_1:58030852-58030871 None:intergenic 25.0%
! TACTTATATCTTGTAGATCA+GGG - chr1_1:58031066-58031085 None:intergenic 25.0%
! TTGTGTCTAATATTTAGACT+TGG + chr1_1:58031348-58031367 Msa0031310:intron 25.0%
! TTTATACATCTCATGTCATA+GGG - chr1_1:58031604-58031623 None:intergenic 25.0%
!!! AAGATATCATAAATGGATTG+AGG + chr1_1:58031622-58031641 Msa0031310:intron 25.0%
! CTAAGTATCAAATAACAATG+AGG - chr1_1:58031648-58031667 None:intergenic 25.0%
!! TTGAAAGTTTTCAATTCAGA+TGG + chr1_1:58031792-58031811 Msa0031310:CDS 25.0%
! TAACAATTGATGGAATGATT+TGG + chr1_1:58032021-58032040 Msa0031310:CDS 25.0%
! AAAAACATTGAACAGCAAAT+GGG - chr1_1:58032118-58032137 None:intergenic 25.0%
!!! GTTCAATGTTTTTGTACTTA+TGG + chr1_1:58032125-58032144 Msa0031310:CDS 25.0%
! TACTTATGGAATGCAAATTT+GGG + chr1_1:58032139-58032158 Msa0031310:CDS 25.0%
! AAGGTAGGTTAATATTATCA+TGG + chr1_1:58033532-58033551 Msa0031310:intron 25.0%
! TAAATAAATACACTGTGTAG+TGG - chr1_1:58033578-58033597 None:intergenic 25.0%
! TAGTATGTTTGTTCATTTAC+TGG + chr1_1:58033792-58033811 Msa0031310:intron 25.0%
! AAATAATGAGTTAACCAGAT+TGG + chr1_1:58033844-58033863 Msa0031310:intron 25.0%
! ACAATCAATTTCCATATCAA+TGG - chr1_1:58033997-58034016 None:intergenic 25.0%
! TCAAGATAAATACATGGATA+AGG - chr1_1:58034229-58034248 None:intergenic 25.0%
!!! AGTTTAAAGGTGTTAGTATT+TGG - chr1_1:58034821-58034840 None:intergenic 25.0%
! ATATCAATTGCTGAAATTGT+AGG + chr1_1:58034953-58034972 Msa0031310:intron 25.0%
! TATCAATTGCTGAAATTGTA+GGG + chr1_1:58034954-58034973 Msa0031310:intron 25.0%
!!! CATTTTTTGTGGCTTAAAAA+TGG - chr1_1:58035109-58035128 None:intergenic 25.0%
! GTATTAAGTCTCATTATACT+TGG + chr1_1:58035419-58035438 Msa0031310:intron 25.0%
! AATTTGCCTTATCAATAAAG+GGG - chr1_1:58035474-58035493 None:intergenic 25.0%
!! TTTTACCCACAATAAAAGTA+CGG - chr1_1:58035753-58035772 None:intergenic 25.0%
!!! AGACACATGTTTTTTGTATA+GGG - chr1_1:58035819-58035838 None:intergenic 25.0%
!!! AAGACACATGTTTTTTGTAT+AGG - chr1_1:58035820-58035839 None:intergenic 25.0%
! ATAAGACACTCAATTTCAAT+TGG - chr1_1:58036000-58036019 None:intergenic 25.0%
! TATATCATCTTACCTTCAAT+AGG + chr1_1:58036137-58036156 Msa0031310:intron 25.0%
! TTTGTACTTATGATAGTTTC+AGG - chr1_1:58036328-58036347 None:intergenic 25.0%
! AGATTGTGAACAAATATATC+GGG + chr1_1:58036927-58036946 Msa0031310:intron 25.0%
!! GAAGTTTCATATTGTAGTTT+TGG + chr1_1:58037087-58037106 Msa0031310:intron 25.0%
! GTATTCATACACTCAAAATT+CGG - chr1_1:58037310-58037329 None:intergenic 25.0%
!!! TTGTTTTATTATTTTGGTGG+AGG + chr1_1:58037786-58037805 Msa0031310:intron 25.0%
! TGATACCATTTAATTCCAAA+AGG + chr1_1:58038004-58038023 Msa0031310:three_prime_UTR 25.0%
!! TAAGTTTGTCTTTTAGATGA+TGG + chr1_1:58038132-58038151 Msa0031310:three_prime_UTR 25.0%
!! GTTGCTTCTAACAAATATTT+TGG + chr1_1:58038154-58038173 Msa0031310:three_prime_UTR 25.0%
! TATAGGAAGTCATTAACAAA+TGG - chr1_1:58038235-58038254 None:intergenic 25.0%
! AAATGAAGGTCACATATTAT+AGG - chr1_1:58038252-58038271 None:intergenic 25.0%
TCAATCACAATCACTTCTTA+TGG + chr1_1:58028666-58028685 Msa0031310:CDS 30.0%
! AAAACTTTTTATACTGGCAG+TGG + chr1_1:58028887-58028906 Msa0031310:intron 30.0%
! AGTCTTTAGGAATAGTCTTT+AGG + chr1_1:58028993-58029012 Msa0031310:intron 30.0%
! GTCTTTAGGAATAGTCTTTA+GGG + chr1_1:58028994-58029013 Msa0031310:intron 30.0%
GCAACCTAAATCTAAGTTTA+TGG + chr1_1:58029371-58029390 Msa0031310:intron 30.0%
ATGCTTATAGATGTTTATGG+AGG + chr1_1:58029423-58029442 Msa0031310:intron 30.0%
!!! GAGTTTTTTTGGCAAAATTG+AGG + chr1_1:58029458-58029477 Msa0031310:intron 30.0%
! GTTCTTTCTTGATTTGATCT+AGG + chr1_1:58029628-58029647 Msa0031310:intron 30.0%
! TCTTTCTTGATTTGATCTAG+GGG + chr1_1:58029630-58029649 Msa0031310:intron 30.0%
AAGGAGGGGTTATAAAAATA+TGG + chr1_1:58029671-58029690 Msa0031310:CDS 30.0%
GGTTATAAAAATATGGCCTT+GGG + chr1_1:58029678-58029697 Msa0031310:CDS 30.0%
AAAATCTATTCATCTGACAG+AGG + chr1_1:58029711-58029730 Msa0031310:CDS 30.0%
ATCAGATAATTCAAAGGCAA+AGG + chr1_1:58029846-58029865 Msa0031310:CDS 30.0%
TATATTACTACCACTAAGAG+AGG - chr1_1:58029928-58029947 None:intergenic 30.0%
CAATTCTTGACTTAGTAAAC+CGG + chr1_1:58030433-58030452 Msa0031310:intron 30.0%
AATTCTTGACTTAGTAAACC+GGG + chr1_1:58030434-58030453 Msa0031310:intron 30.0%
! ACTGCTTCATCCTAATTTTA+TGG + chr1_1:58030563-58030582 Msa0031310:intron 30.0%
! CTGCTTCATCCTAATTTTAT+GGG + chr1_1:58030564-58030583 Msa0031310:intron 30.0%
TATGAAAGTTAGTGACATCA+AGG - chr1_1:58030695-58030714 None:intergenic 30.0%
TAATCCAACTATTGAATTGG+AGG + chr1_1:58031026-58031045 Msa0031310:intron 30.0%
AAAACCTCCAATTCAATAGT+TGG - chr1_1:58031033-58031052 None:intergenic 30.0%
GTACTTATATCTTGTAGATC+AGG - chr1_1:58031067-58031086 None:intergenic 30.0%
ATTATACTATGGGAACATAG+AGG + chr1_1:58031134-58031153 Msa0031310:intron 30.0%
CTAAAAAATAATACTCCCTC+CGG + chr1_1:58031196-58031215 Msa0031310:intron 30.0%
GTTTCTCTTATAAATAGGAC+CGG - chr1_1:58031218-58031237 None:intergenic 30.0%
! ACTAGATACATCAACTTTTG+TGG - chr1_1:58031247-58031266 None:intergenic 30.0%
! TGTCACATTAGTTATTTCCT+AGG + chr1_1:58031400-58031419 Msa0031310:intron 30.0%
! GTCACATTAGTTATTTCCTA+GGG + chr1_1:58031401-58031420 Msa0031310:intron 30.0%
TTACCTAGTTGTTCTTTCAT+GGG - chr1_1:58031490-58031509 None:intergenic 30.0%
! GAATGCATTACATTTTTACG+CGG + chr1_1:58031519-58031538 Msa0031310:intron 30.0%
TTATACATCTCATGTCATAG+GGG - chr1_1:58031603-58031622 None:intergenic 30.0%
CTTTATACATCTCATGTCAT+AGG - chr1_1:58031605-58031624 None:intergenic 30.0%
CTAGCTTATATCAAATTGAC+AGG - chr1_1:58031733-58031752 None:intergenic 30.0%
CAAAAACATTGAACAGCAAA+TGG - chr1_1:58032119-58032138 None:intergenic 30.0%
GTACTTATGGAATGCAAATT+TGG + chr1_1:58032138-58032157 Msa0031310:CDS 30.0%
! TAGCATTTTGTGTTCAGAAT+TGG + chr1_1:58032337-58032356 Msa0031310:CDS 30.0%
! AGCATTTTGTGTTCAGAATT+GGG + chr1_1:58032338-58032357 Msa0031310:CDS 30.0%
GAAAACATAAAGATCTTGAG+TGG + chr1_1:58032389-58032408 Msa0031310:CDS 30.0%
TTTGACCATGCAAAAATTCA+TGG + chr1_1:58032693-58032712 Msa0031310:intron 30.0%
GTTATACTGTGTATGTATGT+GGG - chr1_1:58032779-58032798 None:intergenic 30.0%
AGTTATACTGTGTATGTATG+TGG - chr1_1:58032780-58032799 None:intergenic 30.0%
TGTTATGAACAAGAAAGGTT+AGG - chr1_1:58032811-58032830 None:intergenic 30.0%
GGTTCAACATTTAAACGAAT+TGG + chr1_1:58032929-58032948 Msa0031310:CDS 30.0%
!!! TATTGGTTTTTGAAGTTGGT+TGG + chr1_1:58033078-58033097 Msa0031310:intron 30.0%
!!! ATTGGTTTTTGAAGTTGGTT+GGG + chr1_1:58033079-58033098 Msa0031310:intron 30.0%
ATATACGTTCAAACTGAATG+AGG - chr1_1:58033227-58033246 None:intergenic 30.0%
ACAAACATTAGACTTCATGT+TGG + chr1_1:58033311-58033330 Msa0031310:CDS 30.0%
CAAACATTAGACTTCATGTT+GGG + chr1_1:58033312-58033331 Msa0031310:CDS 30.0%
AAACATTAGACTTCATGTTG+GGG + chr1_1:58033313-58033332 Msa0031310:CDS 30.0%
! TTTCTTGTGTTTCTACATCT+TGG + chr1_1:58033440-58033459 Msa0031310:intron 30.0%
AATCCTACAAGAAAAACTGT+CGG - chr1_1:58033501-58033520 None:intergenic 30.0%
GTAGGATTATGAGAATTCTA+AGG + chr1_1:58033513-58033532 Msa0031310:intron 30.0%
!! GATTATGAGAATTCTAAGGT+AGG + chr1_1:58033517-58033536 Msa0031310:intron 30.0%
!! TCAAATGATTTTAGGTGTAG+TGG - chr1_1:58033646-58033665 None:intergenic 30.0%
TGTCATTCTAACCATTGATA+TGG + chr1_1:58033983-58034002 Msa0031310:intron 30.0%
GTTGTATTTAAGAGGTTTGT+TGG - chr1_1:58034166-58034185 None:intergenic 30.0%
AACAGGTCAAGATAAATACA+TGG - chr1_1:58034235-58034254 None:intergenic 30.0%
TATCTCAAAGATGCTTTGAT+TGG + chr1_1:58034531-58034550 Msa0031310:CDS 30.0%
AAAATCATTATTACGAGGTG+AGG - chr1_1:58034909-58034928 None:intergenic 30.0%
CAGTGAAAATCATTATTACG+AGG - chr1_1:58034914-58034933 None:intergenic 30.0%
TTTGATTGCTGAATGCAATT+TGG + chr1_1:58035294-58035313 Msa0031310:CDS 30.0%
GTTTATTGCATTTGGGTATA+CGG + chr1_1:58035365-58035384 Msa0031310:intron 30.0%
ACACACATATGCATAAAAGA+GGG + chr1_1:58035526-58035545 Msa0031310:intron 30.0%
! AACATTTTGCTAGAACAAGT+TGG + chr1_1:58035702-58035721 Msa0031310:intron 30.0%
!! TGAAGAAAGTGTCACATATA+GGG - chr1_1:58035789-58035808 None:intergenic 30.0%
TAATGCTACACAATCAGTAA+AGG - chr1_1:58036046-58036065 None:intergenic 30.0%
CAACATAATTCTTCAAAACC+AGG + chr1_1:58036348-58036367 Msa0031310:CDS 30.0%
! TTGTTCGAAATAATTTGCGA+AGG + chr1_1:58036418-58036437 Msa0031310:CDS 30.0%
! TGTTCGAAATAATTTGCGAA+GGG + chr1_1:58036419-58036438 Msa0031310:CDS 30.0%
AAAGTAACAAAAAAGCTGCA+AGG + chr1_1:58036631-58036650 Msa0031310:intron 30.0%
!! ATGTAAAGCAAATTTTGGCA+TGG - chr1_1:58036663-58036682 None:intergenic 30.0%
! TGTGCATGTAAAGCAAATTT+TGG - chr1_1:58036668-58036687 None:intergenic 30.0%
TCAGTCATCAATGTTTACAA+TGG - chr1_1:58036854-58036873 None:intergenic 30.0%
GATTGTGAACAAATATATCG+GGG + chr1_1:58036928-58036947 Msa0031310:intron 30.0%
!! TTAGATGTTTTGCTATCACA+TGG + chr1_1:58036993-58037012 Msa0031310:intron 30.0%
!!! CTAGTCTTTTTTTAGTTCAC+AGG - chr1_1:58037247-58037266 None:intergenic 30.0%
! AAAAGACTAGTTCCAACAAT+TGG + chr1_1:58037257-58037276 Msa0031310:intron 30.0%
GTAGTACTAAATCCAATTGT+TGG - chr1_1:58037272-58037291 None:intergenic 30.0%
ATCATATGATGCATTGCAAA+GGG - chr1_1:58037360-58037379 None:intergenic 30.0%
TATCATATGATGCATTGCAA+AGG - chr1_1:58037361-58037380 None:intergenic 30.0%
!!! GGAAGCAATTTTGATTGTTA+AGG + chr1_1:58037540-58037559 Msa0031310:CDS 30.0%
!!! ATTTTGATTGTTAAGGTGCA+TGG + chr1_1:58037547-58037566 Msa0031310:CDS 30.0%
!! TTTTGATTGTTAAGGTGCAT+GGG + chr1_1:58037548-58037567 Msa0031310:CDS 30.0%
! TTTTCTTGGATGAATAACAG+TGG - chr1_1:58037615-58037634 None:intergenic 30.0%
!!! TTGAGTCAATTGGTTTTTCT+TGG - chr1_1:58037629-58037648 None:intergenic 30.0%
TCAAACGTTGAAAATCAGAT+CGG - chr1_1:58037690-58037709 None:intergenic 30.0%
TTTGAGCAATTCATTTGATG+TGG + chr1_1:58037705-58037724 Msa0031310:CDS 30.0%
AAATAGTCACTCACCTTAAT+TGG - chr1_1:58037767-58037786 None:intergenic 30.0%
TTATTATTGCATGCATACAC+AGG - chr1_1:58037852-58037871 None:intergenic 30.0%
GCAAACATCTTGATTATGTT+TGG + chr1_1:58037872-58037891 Msa0031310:intron 30.0%
TATGGTAGATAGACATTTAC+AGG - chr1_1:58038042-58038061 None:intergenic 30.0%
! TTGCTTGGAATTTTGTGTAA+TGG + chr1_1:58038205-58038224 Msa0031310:three_prime_UTR 30.0%
! GGAAAGAATATAGGGAGTAT+TGG - chr1_1:58027968-58027987 None:intergenic 35.0%
! TATAAGAAAGTGCGTTGTTG+AGG - chr1_1:58028060-58028079 None:intergenic 35.0%
! GTTGGTGGAATGAATAGAAT+TGG - chr1_1:58028133-58028152 None:intergenic 35.0%
GTGATTGTGATTGAAAGAAC+AGG - chr1_1:58028660-58028679 None:intergenic 35.0%
GAAATTGTGACTAGTAAGCA+AGG + chr1_1:58028925-58028944 Msa0031310:intron 35.0%
! TAGGAATAGTCTTTAGGGAT+AGG + chr1_1:58028999-58029018 Msa0031310:intron 35.0%
TGTCTGATTTAGGTCCAATT+TGG + chr1_1:58029040-58029059 Msa0031310:intron 35.0%
GGGTTATAAAAATATGGCCT+TGG + chr1_1:58029677-58029696 Msa0031310:CDS 35.0%
! TATAAAAATATGGCCTTGGG+AGG + chr1_1:58029681-58029700 Msa0031310:CDS 35.0%
ATAATTCAAAGGCAAAGGTG+TGG + chr1_1:58029851-58029870 Msa0031310:CDS 35.0%
AACACACTCTCTTACACAAA+TGG + chr1_1:58030354-58030373 Msa0031310:intron 35.0%
TAGAAGTCAACGATGTTCAA+AGG + chr1_1:58030394-58030413 Msa0031310:intron 35.0%
CGGTTTACTAAGTCAAGAAT+TGG - chr1_1:58030435-58030454 None:intergenic 35.0%
TTTATCACTTGACTTACTCC+CGG - chr1_1:58030455-58030474 None:intergenic 35.0%
AACTTCAGTTCAAGGTAAAG+TGG + chr1_1:58030725-58030744 Msa0031310:intron 35.0%
ACTTCAGTTCAAGGTAAAGT+GGG + chr1_1:58030726-58030745 Msa0031310:intron 35.0%
!! TGTATACTTTTCAAGCCCAA+GGG + chr1_1:58030760-58030779 Msa0031310:intron 35.0%
GTGCTAGAGATGTAATACTT+CGG + chr1_1:58030800-58030819 Msa0031310:intron 35.0%
TATGTGTGTCTTTGTCATTG+TGG - chr1_1:58030931-58030950 None:intergenic 35.0%
ACAATGACAAAGACACACAT+AGG + chr1_1:58030930-58030949 Msa0031310:intron 35.0%
! GTATGTCAAGATTTTACGCT+TGG - chr1_1:58030966-58030985 None:intergenic 35.0%
TTTCTTATAAATAGGACCGG+AGG + chr1_1:58031310-58031329 Msa0031310:intron 35.0%
TTCTTATAAATAGGACCGGA+GGG + chr1_1:58031311-58031330 Msa0031310:intron 35.0%
! AGACTTGGTACCAATATGTA+TGG + chr1_1:58031363-58031382 Msa0031310:intron 35.0%
AAACCCATGAAAGAACAACT+AGG + chr1_1:58031484-58031503 Msa0031310:intron 35.0%
CTTACCTAGTTGTTCTTTCA+TGG - chr1_1:58031491-58031510 None:intergenic 35.0%
AGCATGCATCGGAATAAAAA+AGG - chr1_1:58031569-58031588 None:intergenic 35.0%
TATACATCTCATGTCATAGG+GGG - chr1_1:58031602-58031621 None:intergenic 35.0%
CTAGTGCTTATTCATGTACA+GGG + chr1_1:58031749-58031768 Msa0031310:intron 35.0%
TTTCAATTCAGATGGCCAAA+TGG + chr1_1:58031800-58031819 Msa0031310:CDS 35.0%
CTTTCCTAGAACTTGAAACA+AGG - chr1_1:58031869-58031888 None:intergenic 35.0%
GCACTTGTAGTAACAATTGA+TGG + chr1_1:58032011-58032030 Msa0031310:CDS 35.0%
! ATTGATGGAATGATTTGGAC+AGG + chr1_1:58032026-58032045 Msa0031310:CDS 35.0%
ATTTGGACAGGATATTCAAG+TGG + chr1_1:58032038-58032057 Msa0031310:CDS 35.0%
TATGGAATGCAAATTTGGGT+AGG + chr1_1:58032143-58032162 Msa0031310:CDS 35.0%
!!! CCAACTGTCATTTTTACAAC+TGG - chr1_1:58032242-58032261 None:intergenic 35.0%
CCAGTTGTAAAAATGACAGT+TGG + chr1_1:58032239-58032258 Msa0031310:CDS 35.0%
GTAAAAATGACAGTTGGAGT+TGG + chr1_1:58032245-58032264 Msa0031310:CDS 35.0%
AGTTGGCTATGTATTCACAT+TGG + chr1_1:58032262-58032281 Msa0031310:CDS 35.0%
GAACACAAAATGCTATCAAG+AGG - chr1_1:58032332-58032351 None:intergenic 35.0%
! ATTTTGTGTTCAGAATTGGG+CGG + chr1_1:58032341-58032360 Msa0031310:CDS 35.0%
ACCATGCAAAAATTCATGGA+TGG + chr1_1:58032697-58032716 Msa0031310:intron 35.0%
! ACCATCCATGAATTTTTGCA+TGG - chr1_1:58032701-58032720 None:intergenic 35.0%
TATATGCTTGAGAGAGATAG+GGG - chr1_1:58032842-58032861 None:intergenic 35.0%
CTATATGCTTGAGAGAGATA+GGG - chr1_1:58032843-58032862 None:intergenic 35.0%
GGATATGATAGACAAAACAC+TGG + chr1_1:58032901-58032920 Msa0031310:CDS 35.0%
ATAGACAAAACACTGGATGA+AGG + chr1_1:58032908-58032927 Msa0031310:CDS 35.0%
CATTTAAACGAATTGGATCC+AGG + chr1_1:58032936-58032955 Msa0031310:CDS 35.0%
ATTAAGAGCCCAACTATTGA+TGG - chr1_1:58033174-58033193 None:intergenic 35.0%
! GGTAGTTGGTATTTCATTTC+AGG - chr1_1:58033202-58033221 None:intergenic 35.0%
!!! TTGTCGTTGATTTTGTGTTC+AGG + chr1_1:58033282-58033301 Msa0031310:intron 35.0%
!!! TGTCGTTGATTTTGTGTTCA+GGG + chr1_1:58033283-58033302 Msa0031310:intron 35.0%
! GTGCTATTGGAAATAAGGTA+GGG + chr1_1:58033372-58033391 Msa0031310:intron 35.0%
!! GATTTTAGGTGTAGTGGAAA+TGG - chr1_1:58033640-58033659 None:intergenic 35.0%
! GAGTTAACCAGATTGGTTAT+AGG + chr1_1:58033851-58033870 Msa0031310:intron 35.0%
! TTAACCAGATTGGTTATAGG+TGG + chr1_1:58033854-58033873 Msa0031310:intron 35.0%
TAAACCACCTATAACCAATC+TGG - chr1_1:58033861-58033880 None:intergenic 35.0%
AACCTCTTAAATACAACACC+TGG + chr1_1:58034169-58034188 Msa0031310:CDS 35.0%
! TACCAGGTGTTGTATTTAAG+AGG - chr1_1:58034174-58034193 None:intergenic 35.0%
AACAGTAATAGACAGAGGAA+AGG - chr1_1:58034197-58034216 None:intergenic 35.0%
TGAGAAACAGTAATAGACAG+AGG - chr1_1:58034202-58034221 None:intergenic 35.0%
TCTTGACCTGTTTATAGATC+TGG + chr1_1:58034243-58034262 Msa0031310:intron 35.0%
!! TTATAGATCTGGCTTGCTAT+TGG + chr1_1:58034254-58034273 Msa0031310:intron 35.0%
ACATTTGTACCACGAAACAT+TGG - chr1_1:58034315-58034334 None:intergenic 35.0%
GCAGACATGATTGTATTTCT+TGG + chr1_1:58034455-58034474 Msa0031310:CDS 35.0%
!! CTTTGATTGGCTTAGAGAAA+GGG + chr1_1:58034544-58034563 Msa0031310:CDS 35.0%
TGTCGTTCAAACTTGTATGT+GGG - chr1_1:58034641-58034660 None:intergenic 35.0%
! TCTCTGAAAACTGAACTTGA+AGG + chr1_1:58034737-58034756 Msa0031310:intron 35.0%
! CTCTGAAAACTGAACTTGAA+GGG + chr1_1:58034738-58034757 Msa0031310:intron 35.0%
! GATTTTCACTGTTCTCTTCA+TGG + chr1_1:58034923-58034942 Msa0031310:intron 35.0%
!! TATTTTGAAGGGTATGACTC+TGG + chr1_1:58035211-58035230 Msa0031310:intron 35.0%
ATACAAAATTCTGTCACACC+AGG - chr1_1:58035257-58035276 None:intergenic 35.0%
GATCAAAATACCCTACCATA+AGG + chr1_1:58035387-58035406 Msa0031310:intron 35.0%
TAATACGCACAAAGTCCTTA+TGG - chr1_1:58035405-58035424 None:intergenic 35.0%
CACACACATATGCATAAAAG+AGG + chr1_1:58035525-58035544 Msa0031310:intron 35.0%
GTACATCACAAGAATATCAG+AGG + chr1_1:58035592-58035611 Msa0031310:intron 35.0%
AAGAATATCAGAGGATTGAC+AGG + chr1_1:58035601-58035620 Msa0031310:intron 35.0%
! ACTTTGCCGTACTTTTATTG+TGG + chr1_1:58035744-58035763 Msa0031310:intron 35.0%
! CTTTGCCGTACTTTTATTGT+GGG + chr1_1:58035745-58035764 Msa0031310:intron 35.0%
!! CTGAAGAAAGTGTCACATAT+AGG - chr1_1:58035790-58035809 None:intergenic 35.0%
ATGTGACACTTTCTTCAGAT+CGG + chr1_1:58035792-58035811 Msa0031310:intron 35.0%
! TGGAGTTTTTGTGATGTGTA+GGG - chr1_1:58035870-58035889 None:intergenic 35.0%
! ATGGAGTTTTTGTGATGTGT+AGG - chr1_1:58035871-58035890 None:intergenic 35.0%
TTGACAATGTCACATTGACA+TGG - chr1_1:58035890-58035909 None:intergenic 35.0%
TCAATGTGACATTGTCAAAG+CGG + chr1_1:58035892-58035911 Msa0031310:intron 35.0%
TACGCAAAATTAATGTGTCC+TGG - chr1_1:58036369-58036388 None:intergenic 35.0%
!! TAAAGCAAATTTTGGCATGG+CGG - chr1_1:58036660-58036679 None:intergenic 35.0%
AGATGAGATCTACACACTTA+AGG + chr1_1:58036801-58036820 Msa0031310:intron 35.0%
AAATATATCGGGGAGTAAGT+TGG + chr1_1:58036938-58036957 Msa0031310:intron 35.0%
ATGCAGTCAATGTGAAAGAT+AGG + chr1_1:58037036-58037055 Msa0031310:intron 35.0%
TGACTGCTGATCAAATTGAA+CGG - chr1_1:58037147-58037166 None:intergenic 35.0%
CAAAACATCATACAGATGTG+TGG + chr1_1:58037165-58037184 Msa0031310:intron 35.0%
! ACCTGCACATTTTATGATTC+AGG + chr1_1:58037384-58037403 Msa0031310:intron 35.0%
ACCTGAATCATAAAATGTGC+AGG - chr1_1:58037388-58037407 None:intergenic 35.0%
AAGACCAGATCAGATTATTG+AGG + chr1_1:58037429-58037448 Msa0031310:CDS 35.0%
GATACCTCAATAATCTGATC+TGG - chr1_1:58037436-58037455 None:intergenic 35.0%
!! ATGGTGTTGTACAAAACTCT+TGG + chr1_1:58037497-58037516 Msa0031310:CDS 35.0%
! AACCAATTGACTCAACCAAA+CGG + chr1_1:58037634-58037653 Msa0031310:CDS 35.0%
AACTGATAAACTGTCTTGCA+AGG + chr1_1:58037816-58037835 Msa0031310:intron 35.0%
ACTGATAAACTGTCTTGCAA+GGG + chr1_1:58037817-58037836 Msa0031310:intron 35.0%
TTGTGGTTGAACTTGAATCA+TGG + chr1_1:58037931-58037950 Msa0031310:three_prime_UTR 35.0%
!!! GAGCTCCTTTTGGAATTAAA+TGG - chr1_1:58038012-58038031 None:intergenic 35.0%
! AGGTTAAATTGAGCTCCTTT+TGG - chr1_1:58038022-58038041 None:intergenic 35.0%
TTCCCTTTCAATTGTAGCTT+CGG - chr1_1:58038073-58038092 None:intergenic 35.0%
AATTGAAAGGGAAAATCCAG+TGG + chr1_1:58038080-58038099 Msa0031310:three_prime_UTR 35.0%
CTAGCATCTCATTATTTGCT+TGG + chr1_1:58038190-58038209 Msa0031310:three_prime_UTR 35.0%
AATCGCGCGGAAAGAATATA+GGG - chr1_1:58027976-58027995 None:intergenic 40.0%
!!! AAGATGAAGAAGCGTCGTTT+TGG - chr1_1:58028020-58028039 None:intergenic 40.0%
GGTGGAATGAATAGAATTGG+AGG - chr1_1:58028130-58028149 None:intergenic 40.0%
TTAAAGATCTGTATGCGTCG+TGG + chr1_1:58028421-58028440 Msa0031310:CDS 40.0%
ATTTGTTTGGTTGCGGATGA+AGG + chr1_1:58028525-58028544 Msa0031310:CDS 40.0%
TTTGTTTGGTTGCGGATGAA+GGG + chr1_1:58028526-58028545 Msa0031310:CDS 40.0%
GAAGATTCGCTGTTGGTATA+TGG + chr1_1:58028581-58028600 Msa0031310:CDS 40.0%
ATCTATTCATCTGACAGAGG+AGG + chr1_1:58029714-58029733 Msa0031310:CDS 40.0%
TGTAGCCATTTGTAGATAGC+TGG - chr1_1:58029792-58029811 None:intergenic 40.0%
! TTTTTCATATCCTGTGGTCG+CGG + chr1_1:58030010-58030029 Msa0031310:intron 40.0%
TAAATATAATCCGCGACCAC+AGG - chr1_1:58030023-58030042 None:intergenic 40.0%
AAATGCTAACAAGTGCCCTT+GGG + chr1_1:58030060-58030079 Msa0031310:intron 40.0%
AATCCTTAACAAGTGCCCTT+AGG + chr1_1:58030200-58030219 Msa0031310:intron 40.0%
CTTGCTAACAAGTGACCTAA+GGG - chr1_1:58030218-58030237 None:intergenic 40.0%
TCTTGCTAACAAGTGACCTA+AGG - chr1_1:58030219-58030238 None:intergenic 40.0%
AGTCAACGATGTTCAAAGGA+TGG + chr1_1:58030398-58030417 Msa0031310:intron 40.0%
!! CTGTATACTTTTCAAGCCCA+AGG + chr1_1:58030759-58030778 Msa0031310:intron 40.0%
TACATCTCTAGCACACATCT+CGG - chr1_1:58030794-58030813 None:intergenic 40.0%
AACAACCATAAGCTGTTACG+TGG - chr1_1:58030829-58030848 None:intergenic 40.0%
!!! GATTTTACGCTTGGTGTAAG+TGG - chr1_1:58030957-58030976 None:intergenic 40.0%
CTTGACATACTTACGTCCTT+TGG + chr1_1:58030976-58030995 Msa0031310:intron 40.0%
CATTTATGGAGAGCTACCAA+AGG - chr1_1:58030995-58031014 None:intergenic 40.0%
CTCTTATAAATAGGACCGGA+GGG - chr1_1:58031214-58031233 None:intergenic 40.0%
TCTCTTATAAATAGGACCGG+AGG - chr1_1:58031215-58031234 None:intergenic 40.0%
AAACTACCTATTACTCCCTC+CGG - chr1_1:58031329-58031348 None:intergenic 40.0%
AAAAAGGACACGAGAGATTC+AGG - chr1_1:58031553-58031572 None:intergenic 40.0%
GCTAGTGCTTATTCATGTAC+AGG + chr1_1:58031748-58031767 Msa0031310:intron 40.0%
! AGTCTGATCGATTCTCCATT+TGG - chr1_1:58031818-58031837 None:intergenic 40.0%
!! CTGACCTTGTTTCAAGTTCT+AGG + chr1_1:58031862-58031881 Msa0031310:CDS 40.0%
ACAGAAGCCAAAGTTCCATT+GGG + chr1_1:58031889-58031908 Msa0031310:CDS 40.0%
GAAAGAACCCAATGGAACTT+TGG - chr1_1:58031899-58031918 None:intergenic 40.0%
AACATTGAACAGCAAATGGG+TGG - chr1_1:58032115-58032134 None:intergenic 40.0%
ATTTGGGTAGGTTATGTGTC+TGG + chr1_1:58032155-58032174 Msa0031310:CDS 40.0%
! GTATTCACATTGGCTAACCA+CGG + chr1_1:58032272-58032291 Msa0031310:CDS 40.0%
AAAATGCTATCAAGAGGTCC+TGG - chr1_1:58032326-58032345 None:intergenic 40.0%
TAAAGATCTTGAGTGGCACT+TGG + chr1_1:58032396-58032415 Msa0031310:CDS 40.0%
CTCAAGATTCCCTTACTTCA+TGG + chr1_1:58032441-58032460 Msa0031310:CDS 40.0%
AGAACCTAGCCATGAAGTAA+GGG - chr1_1:58032453-58032472 None:intergenic 40.0%
!! ATGTTGGCCTTGTTGTTGTT+GGG + chr1_1:58032483-58032502 Msa0031310:CDS 40.0%
TGATAGGTAAGAGTGAGAAC+AGG - chr1_1:58032747-58032766 None:intergenic 40.0%
ATGTGGGTAAGGTACATGAT+AGG - chr1_1:58032763-58032782 None:intergenic 40.0%
ACTGTGTATGTATGTGGGTA+AGG - chr1_1:58032774-58032793 None:intergenic 40.0%
CCTATATGCTTGAGAGAGAT+AGG - chr1_1:58032844-58032863 None:intergenic 40.0%
CCTATCTCTCTCAAGCATAT+AGG + chr1_1:58032841-58032860 Msa0031310:intron 40.0%
TCTCTCTCAAGCATATAGGT+AGG + chr1_1:58032845-58032864 Msa0031310:intron 40.0%
TCACGTGTATTTCTCCACAT+AGG - chr1_1:58032998-58033017 None:intergenic 40.0%
ATCGATGCACCATCAATAGT+TGG + chr1_1:58033162-58033181 Msa0031310:intron 40.0%
TCGATGCACCATCAATAGTT+GGG + chr1_1:58033163-58033182 Msa0031310:intron 40.0%
ACGTTCAAACTGAATGAGGA+CGG - chr1_1:58033223-58033242 None:intergenic 40.0%
! TTTTCGAAGTTCTGCCTTGT+TGG + chr1_1:58033251-58033270 Msa0031310:intron 40.0%
CGACAATTGAAGAACCAACA+AGG - chr1_1:58033268-58033287 None:intergenic 40.0%
! TGGACGTGCTATTGGAAATA+AGG + chr1_1:58033367-58033386 Msa0031310:CDS 40.0%
! CGTGCTATTGGAAATAAGGT+AGG + chr1_1:58033371-58033390 Msa0031310:intron 40.0%
! GATCCGACAGTTTTTCTTGT+AGG + chr1_1:58033495-58033514 Msa0031310:intron 40.0%
TGGAAATTGATTGTCTCACC+AGG + chr1_1:58034003-58034022 Msa0031310:intron 40.0%
GGAAATTGATTGTCTCACCA+GGG + chr1_1:58034004-58034023 Msa0031310:intron 40.0%
TGAGGGTTAGAGTGTATGAT+CGG + chr1_1:58034038-58034057 Msa0031310:CDS 40.0%
GTCGACTAAAGGACATTGTT+CGG - chr1_1:58034144-58034163 None:intergenic 40.0%
AGCAAGCCAGATCTATAAAC+AGG - chr1_1:58034252-58034271 None:intergenic 40.0%
GCTTCTATTCCAATGTTTCG+TGG + chr1_1:58034303-58034322 Msa0031310:CDS 40.0%
!! GAAGCACTGATTCTTGAGAT+TGG + chr1_1:58034395-58034414 Msa0031310:intron 40.0%
!! GCTTTGATTGGCTTAGAGAA+AGG + chr1_1:58034543-58034562 Msa0031310:CDS 40.0%
! GTGTCGTTCAAACTTGTATG+TGG - chr1_1:58034642-58034661 None:intergenic 40.0%
ACACACACACACACACAAAT+TGG + chr1_1:58034714-58034733 Msa0031310:intron 40.0%
TTCACTGTTCTCTTCATGGA+TGG + chr1_1:58034927-58034946 Msa0031310:intron 40.0%
TTGCTGAAATTGTAGGGTTG+AGG + chr1_1:58034960-58034979 Msa0031310:intron 40.0%
TGAAATTGTAGGGTTGAGGT+GGG + chr1_1:58034964-58034983 Msa0031310:intron 40.0%
GCAATACTGAAGAGACAACA+GGG - chr1_1:58035324-58035343 None:intergenic 40.0%
TGCAATACTGAAGAGACAAC+AGG - chr1_1:58035325-58035344 None:intergenic 40.0%
CTCTGACCCCTTTATTGATA+AGG + chr1_1:58035465-58035484 Msa0031310:intron 40.0%
GATCAGATTCAGAACCTGTT+GGG + chr1_1:58035561-58035580 Msa0031310:intron 40.0%
ATGTACTACTGAATCCCAAC+AGG - chr1_1:58035578-58035597 None:intergenic 40.0%
! TTTGCTAGAACAAGTTGGCT+TGG + chr1_1:58035707-58035726 Msa0031310:intron 40.0%
!!! CAAGTTGGCTTGGCAAATTT+TGG + chr1_1:58035717-58035736 Msa0031310:intron 40.0%
! GGAGTTTTTGTGATGTGTAG+GGG - chr1_1:58035869-58035888 None:intergenic 40.0%
CAAAGCGGCAATAGATGTTA+AGG + chr1_1:58035907-58035926 Msa0031310:intron 40.0%
! ATGTTTCCGAAAAGCATGAG+TGG + chr1_1:58036075-58036094 Msa0031310:intron 40.0%
CTCGAGTAGATGAACCAATA+CGG + chr1_1:58036230-58036249 Msa0031310:CDS 40.0%
CAAAAGAACCTCTCAACTGA+TGG - chr1_1:58036480-58036499 None:intergenic 40.0%
! CATCAGTTGAGAGGTTCTTT+TGG + chr1_1:58036478-58036497 Msa0031310:CDS 40.0%
AATATTACCTCAAGCCACCT+AGG - chr1_1:58036508-58036527 None:intergenic 40.0%
TGAGATCTACACACTTAAGG+AGG + chr1_1:58036804-58036823 Msa0031310:intron 40.0%
GTTTACAATGGACCTGTGTA+GGG - chr1_1:58036842-58036861 None:intergenic 40.0%
TGTTTACAATGGACCTGTGT+AGG - chr1_1:58036843-58036862 None:intergenic 40.0%
! TCACATTGACTGCATGAAAG+TGG - chr1_1:58037031-58037050 None:intergenic 40.0%
! TTTTGGTCAACTCACTCTTG+TGG + chr1_1:58037104-58037123 Msa0031310:intron 40.0%
! GGTGTTATGTCTGCATCATA+TGG + chr1_1:58037201-58037220 Msa0031310:intron 40.0%
! GGTCTTATAATACCAGTTGC+AGG - chr1_1:58037415-58037434 None:intergenic 40.0%
TCATGAGGAATTTCAGACTC+AGG + chr1_1:58037462-58037481 Msa0031310:CDS 40.0%
!! ACTCAGGAAGAGTTTGTTGA+TGG + chr1_1:58037478-58037497 Msa0031310:CDS 40.0%
CAAAATTGCTTCCTTGTCTC+TGG - chr1_1:58037533-58037552 None:intergenic 40.0%
! CACCTTAATTGGTGCTTCAA+GGG - chr1_1:58037756-58037775 None:intergenic 40.0%
! TCACCTTAATTGGTGCTTCA+AGG - chr1_1:58037757-58037776 None:intergenic 40.0%
! TTCTTTTCATAGGGAGCTTG+TGG + chr1_1:58037914-58037933 Msa0031310:intron 40.0%
GTACAGAGAAAGCAAATGCA+AGG + chr1_1:58037967-58037986 Msa0031310:three_prime_UTR 40.0%
AGCCGAAGCTACAATTGAAA+GGG + chr1_1:58038068-58038087 Msa0031310:three_prime_UTR 40.0%
GAAAATCCAGTGGCATGTTA+GGG + chr1_1:58038090-58038109 Msa0031310:three_prime_UTR 40.0%
AAAAAATCCGACGACGTTTG+TGG + chr1_1:58038319-58038338 Msa0031310:three_prime_UTR 40.0%
ATACCTTCTGTCCAAACGCT+CGG + chr1_1:58027898-58027917 Msa0031310:five_prime_UTR 45.0%
GAATCGCGCGGAAAGAATAT+AGG - chr1_1:58027977-58027996 None:intergenic 45.0%
ATCCATTAGATCGAATCGCG+CGG - chr1_1:58027989-58028008 None:intergenic 45.0%
GTCGTTGGAAGAAGAAGAAG+AGG - chr1_1:58028091-58028110 None:intergenic 45.0%
ATTGGAGCATGCAATCGAGA+CGG - chr1_1:58028158-58028177 None:intergenic 45.0%
TGAGTTTACGGTCGAGGAAT+TGG - chr1_1:58028176-58028195 None:intergenic 45.0%
AGATAGTGAGTTTACGGTCG+AGG - chr1_1:58028182-58028201 None:intergenic 45.0%
GGTCGGAGATAGTGAGTTTA+CGG - chr1_1:58028188-58028207 None:intergenic 45.0%
GAGAGGAGGTTTGAAGATTC+CGG - chr1_1:58028250-58028269 None:intergenic 45.0%
TAATTCGAGAGAAGGAGGAC+GGG - chr1_1:58028292-58028311 None:intergenic 45.0%
GTAATTCGAGAGAAGGAGGA+CGG - chr1_1:58028293-58028312 None:intergenic 45.0%
! GTCCAAACCGATTCACGAAA+CGG - chr1_1:58028495-58028514 None:intergenic 45.0%
!! ATGAAGGGAATAGGTTGGTG+TGG + chr1_1:58028541-58028560 Msa0031310:CDS 45.0%
TGTGGAGTGGACATAGAGAT+GGG + chr1_1:58028559-58028578 Msa0031310:CDS 45.0%
TTATCTTGGCAAGCTCATCG+TGG + chr1_1:58028633-58028652 Msa0031310:CDS 45.0%
! GTTGTTACTTGCGATTGCGA+TGG + chr1_1:58028969-58028988 Msa0031310:intron 45.0%
CGATTGCGATGGAAGTCTTT+AGG + chr1_1:58028980-58028999 Msa0031310:intron 45.0%
GATTTGATCTAGGGGATCTG+TGG + chr1_1:58029638-58029657 Msa0031310:intron 45.0%
!! GATTTTTCAACAGCCTCCCA+AGG - chr1_1:58029697-58029716 None:intergenic 45.0%
TTCATCTGACAGAGGAGGAA+AGG + chr1_1:58029719-58029738 Msa0031310:CDS 45.0%
!! AGAGATCCTACGTTGACTTG+AGG + chr1_1:58029764-58029783 Msa0031310:CDS 45.0%
AGGAGCCAGCTATCTACAAA+TGG + chr1_1:58029784-58029803 Msa0031310:CDS 45.0%
GAAATGCTAACAAGTGCCCT+TGG + chr1_1:58030059-58030078 Msa0031310:intron 45.0%
AATGCTAACAAGTGCCCTTG+GGG + chr1_1:58030061-58030080 Msa0031310:intron 45.0%
CTTCTTATCAAGTGCCCCAA+GGG - chr1_1:58030078-58030097 None:intergenic 45.0%
ACTTCTTATCAAGTGCCCCA+AGG - chr1_1:58030079-58030098 None:intergenic 45.0%
!! TGACCTAAGGGCACTTGTTA+AGG - chr1_1:58030206-58030225 None:intergenic 45.0%
TAGCACACATCTCGGACAAA+AGG - chr1_1:58030786-58030805 None:intergenic 45.0%
CAAGAAGCAAGTTAGACCCT+AGG - chr1_1:58031420-58031439 None:intergenic 45.0%
GCCTTCAATGCAAGACTTTC+CGG + chr1_1:58031839-58031858 Msa0031310:CDS 45.0%
GAACTTGAAACAAGGTCAGC+CGG - chr1_1:58031861-58031880 None:intergenic 45.0%
GACAGAAGCCAAAGTTCCAT+TGG + chr1_1:58031888-58031907 Msa0031310:CDS 45.0%
CGCTCACGTAATGCCATAAT+GGG + chr1_1:58031921-58031940 Msa0031310:CDS 45.0%
GCTCACGTAATGCCATAATG+GGG + chr1_1:58031922-58031941 Msa0031310:CDS 45.0%
CTCACGTAATGCCATAATGG+GGG + chr1_1:58031923-58031942 Msa0031310:CDS 45.0%
! GAGCCTTTGGAGATGAGAAT+CGG + chr1_1:58031979-58031998 Msa0031310:CDS 45.0%
TCTCCGATTCTCATCTCCAA+AGG - chr1_1:58031985-58032004 None:intergenic 45.0%
! AGGATATTCAAGTGGCTTGC+TGG + chr1_1:58032046-58032065 Msa0031310:CDS 45.0%
TGGAAATGGCAATCGCATAC+AGG + chr1_1:58032079-58032098 Msa0031310:CDS 45.0%
TTATGTGTCTGGCATTGTCC+AGG + chr1_1:58032166-58032185 Msa0031310:CDS 45.0%
ACCTGAAGGGTAACCTGATA+GGG + chr1_1:58032195-58032214 Msa0031310:CDS 45.0%
TTGAGTGGCACTTGGAATGT+TGG + chr1_1:58032404-58032423 Msa0031310:CDS 45.0%
GATTCCCTTACTTCATGGCT+AGG + chr1_1:58032446-58032465 Msa0031310:CDS 45.0%
CAGAACCTAGCCATGAAGTA+AGG - chr1_1:58032454-58032473 None:intergenic 45.0%
TACTTCATGGCTAGGTTCTG+TGG + chr1_1:58032454-58032473 Msa0031310:CDS 45.0%
AACAACAAGGCCAACATCTG+AGG - chr1_1:58032480-58032499 None:intergenic 45.0%
!! GATGTTGGCCTTGTTGTTGT+TGG + chr1_1:58032482-58032501 Msa0031310:CDS 45.0%
CTTGCAACCCAACAACAACA+AGG - chr1_1:58032493-58032512 None:intergenic 45.0%
! TGTTGTTGTTGGGTTGCAAG+AGG + chr1_1:58032493-58032512 Msa0031310:CDS 45.0%
TGGGTTGCAAGAGGTTGAAA+TGG + chr1_1:58032502-58032521 Msa0031310:CDS 45.0%
GGGTTGCAAGAGGTTGAAAT+GGG + chr1_1:58032503-58032522 Msa0031310:CDS 45.0%
!! GGGGGTGTTATGAACAAGAA+AGG - chr1_1:58032816-58032835 None:intergenic 45.0%
TTGAGAGAGATAGGGGTTAG+GGG - chr1_1:58032835-58032854 None:intergenic 45.0%
CTTGAGAGAGATAGGGGTTA+GGG - chr1_1:58032836-58032855 None:intergenic 45.0%
CTCAAGCATATAGGTAGGAC+TGG + chr1_1:58032850-58032869 Msa0031310:intron 45.0%
AAGCATATAGGTAGGACTGG+AGG + chr1_1:58032853-58032872 Msa0031310:intron 45.0%
AGCATATAGGTAGGACTGGA+GGG + chr1_1:58032854-58032873 Msa0031310:intron 45.0%
AACTGAATGAGGACGGTAGT+TGG - chr1_1:58033216-58033235 None:intergenic 45.0%
ACTTCATGTTGGGGATGTTG+AGG + chr1_1:58033322-58033341 Msa0031310:CDS 45.0%
CTATGCTTTGCAAGCTGGTT+TGG + chr1_1:58033412-58033431 Msa0031310:intron 45.0%
GCTGCACATTTAGATGCAGT+TGG + chr1_1:58034088-58034107 Msa0031310:CDS 45.0%
!! GAGGTTTGTTGGTCGACTAA+AGG - chr1_1:58034155-58034174 None:intergenic 45.0%
!! ATAGACAGAGGAAAGGTACC+AGG - chr1_1:58034190-58034209 None:intergenic 45.0%
AAGTTCCAGCTGCAACAGAA+AGG - chr1_1:58034281-58034300 None:intergenic 45.0%
AGGGATACCTGAGTTATCTG+AGG + chr1_1:58034433-58034452 Msa0031310:CDS 45.0%
ATGTCTGCCTCAGATAACTC+AGG - chr1_1:58034443-58034462 None:intergenic 45.0%
TTCGAGCTGAAATGGAAGCT+GGG + chr1_1:58034573-58034592 Msa0031310:CDS 45.0%
TTACTGCTTCACGCATTCCT+TGG - chr1_1:58034607-58034626 None:intergenic 45.0%
CGTTCAAACTTGTATGTGGG+AGG - chr1_1:58034638-58034657 None:intergenic 45.0%
AAGTTTGAACGACACCAAGC+TGG + chr1_1:58034647-58034666 Msa0031310:CDS 45.0%
CATTATTACGAGGTGAGGCT+GGG - chr1_1:58034904-58034923 None:intergenic 45.0%
TCATTATTACGAGGTGAGGC+TGG - chr1_1:58034905-58034924 None:intergenic 45.0%
CTGAAATTGTAGGGTTGAGG+TGG + chr1_1:58034963-58034982 Msa0031310:intron 45.0%
GAAATTGTAGGGTTGAGGTG+GGG + chr1_1:58034965-58034984 Msa0031310:intron 45.0%
TTTGGGTGCTTGCAACTTCA+TGG + chr1_1:58035043-58035062 Msa0031310:intron 45.0%
AAATTCTGTCACACCAGGCA+GGG - chr1_1:58035252-58035271 None:intergenic 45.0%
AAAATTCTGTCACACCAGGC+AGG - chr1_1:58035253-58035272 None:intergenic 45.0%
CGCACAAAGTCCTTATGGTA+GGG - chr1_1:58035400-58035419 None:intergenic 45.0%
ACGCACAAAGTCCTTATGGT+AGG - chr1_1:58035401-58035420 None:intergenic 45.0%
CGATCAGATTCAGAACCTGT+TGG + chr1_1:58035560-58035579 Msa0031310:intron 45.0%
! GTGCTTCCACTCATGCTTTT+CGG - chr1_1:58036084-58036103 None:intergenic 45.0%
ACTATCTGTGACATCCATGC+AGG - chr1_1:58036170-58036189 None:intergenic 45.0%
AGATGAACCAATACGGAGAC+AGG + chr1_1:58036237-58036256 Msa0031310:CDS 45.0%
TACTGTACTGGAGGATCAGA+AGG + chr1_1:58036447-58036466 Msa0031310:CDS 45.0%
GCAACAAACCATCAGTTGAG+AGG + chr1_1:58036469-58036488 Msa0031310:CDS 45.0%
! GAGGTTCTTTTGGATTGCCT+AGG + chr1_1:58036488-58036507 Msa0031310:CDS 45.0%
! GTTCTTTTGGATTGCCTAGG+TGG + chr1_1:58036491-58036510 Msa0031310:CDS 45.0%
AAGTTGAAGAAGCCCTACAC+AGG + chr1_1:58036827-58036846 Msa0031310:intron 45.0%
TAGTGGAGATAAGACTGCTG+AGG + chr1_1:58036882-58036901 Msa0031310:intron 45.0%
ATGATGCAGACATAACACCC+CGG - chr1_1:58037200-58037219 None:intergenic 45.0%
ATTCAGGTAAGTCCTGCAAC+TGG + chr1_1:58037400-58037419 Msa0031310:intron 45.0%
! TGAGGTATCAGTGCATCATG+AGG + chr1_1:58037447-58037466 Msa0031310:CDS 45.0%
AGCCGTTTGGTTGAGTCAAT+TGG - chr1_1:58037639-58037658 None:intergenic 45.0%
ATCGGTGAAGTACACTTCCT+TGG - chr1_1:58037672-58037691 None:intergenic 45.0%
GGCTATGCAATTTATGCAGC+TGG - chr1_1:58037735-58037754 None:intergenic 45.0%
! AGCCCTTGAAGCACCAATTA+AGG + chr1_1:58037751-58037770 Msa0031310:exon 45.0%
GTAGCTTCGGCTGTTTAGTA+TGG - chr1_1:58038060-58038079 None:intergenic 45.0%
CAGCCGAAGCTACAATTGAA+AGG + chr1_1:58038067-58038086 Msa0031310:three_prime_UTR 45.0%
GGAAAATCCAGTGGCATGTT+AGG + chr1_1:58038089-58038108 Msa0031310:three_prime_UTR 45.0%
!! AAAAAAAATAAAAAATATTG+GGG - chr1_1:58033895-58033914 None:intergenic 5.0%
AAATGGAGAGACCGAGCGTT+TGG - chr1_1:58027912-58027931 None:intergenic 50.0%
TTCCGCGCGATTCGATCTAA+TGG + chr1_1:58027984-58028003 Msa0031310:exon 50.0%
!!! GAAGCGTCGTTTTGGTGAAG+TGG - chr1_1:58028012-58028031 None:intergenic 50.0%
TGTTGAGGAGTAGACGACAG+TGG - chr1_1:58028045-58028064 None:intergenic 50.0%
TGAAACGTCGTCGTTGTCGT+TGG - chr1_1:58028106-58028125 None:intergenic 50.0%
TGGCGATGAATTCAGGGAGA+GGG - chr1_1:58028215-58028234 None:intergenic 50.0%
TTGGCGATGAATTCAGGGAG+AGG - chr1_1:58028216-58028235 None:intergenic 50.0%
CTCCCTGAATTCATCGCCAA+AGG + chr1_1:58028216-58028235 Msa0031310:CDS 50.0%
CGCCTTTGGCGATGAATTCA+GGG - chr1_1:58028221-58028240 None:intergenic 50.0%
CCTGAATTCATCGCCAAAGG+CGG + chr1_1:58028219-58028238 Msa0031310:CDS 50.0%
GGACGTAATTCGAGAGAAGG+AGG - chr1_1:58028297-58028316 None:intergenic 50.0%
TGGGGACGTAATTCGAGAGA+AGG - chr1_1:58028300-58028319 None:intergenic 50.0%
CCAATCTGAGTCTCGCGTAA+GGG - chr1_1:58028324-58028343 None:intergenic 50.0%
TCCAATCTGAGTCTCGCGTA+AGG - chr1_1:58028325-58028344 None:intergenic 50.0%
TACGCGAGACTCAGATTGGA+CGG + chr1_1:58028325-58028344 Msa0031310:CDS 50.0%
TTGCGACCGAGTCGCAATTA+TGG + chr1_1:58028364-58028383 Msa0031310:CDS 50.0%
CGCAGACCATAATTGCGACT+CGG - chr1_1:58028373-58028392 None:intergenic 50.0%
TTATGGTCTGCGACTGAACG+TGG + chr1_1:58028381-58028400 Msa0031310:CDS 50.0%
GATCTGTATGCGTCGTGGTA+CGG + chr1_1:58028426-58028445 Msa0031310:CDS 50.0%
GAGTGCACCGTTTCGTGAAT+CGG + chr1_1:58028485-58028504 Msa0031310:CDS 50.0%
CACCGTTTCGTGAATCGGTT+TGG + chr1_1:58028490-58028509 Msa0031310:CDS 50.0%
!! TGAATCGGTTTGGACTTCGC+CGG + chr1_1:58028500-58028519 Msa0031310:CDS 50.0%
TCCGCAACCAAACAAATCGC+CGG - chr1_1:58028522-58028541 None:intergenic 50.0%
TGGTTGCGGATGAAGGGAAT+AGG + chr1_1:58028532-58028551 Msa0031310:CDS 50.0%
TGCGGATGAAGGGAATAGGT+TGG + chr1_1:58028536-58028555 Msa0031310:CDS 50.0%
GTGTGGAGTGGACATAGAGA+TGG + chr1_1:58028558-58028577 Msa0031310:CDS 50.0%
GAGATGGGAAGATTCGCTGT+TGG + chr1_1:58028574-58028593 Msa0031310:CDS 50.0%
TGATCTAGGGGATCTGTGGT+CGG + chr1_1:58029642-58029661 Msa0031310:intron 50.0%
TACCACTAAGAGAGGCTGCT+AGG - chr1_1:58029920-58029939 None:intergenic 50.0%
ATCTCGGACAAAAGGCCCTT+GGG - chr1_1:58030778-58030797 None:intergenic 50.0%
GGCATCCACGTAACAGCTTA+TGG + chr1_1:58030821-58030840 Msa0031310:intron 50.0%
ATAGGACCGGAGGGAGTAAT+AGG + chr1_1:58031320-58031339 Msa0031310:intron 50.0%
GCCGGAAAGTCTTGCATTGA+AGG - chr1_1:58031843-58031862 None:intergenic 50.0%
!! TGAGCGCTGAAAGAACCCAA+TGG - chr1_1:58031907-58031926 None:intergenic 50.0%
GCGCTCACGTAATGCCATAA+TGG + chr1_1:58031920-58031939 Msa0031310:CDS 50.0%
!! AAGTGGCTTGCTGGTGCAAT+GGG + chr1_1:58032055-58032074 Msa0031310:CDS 50.0%
CTGGTGCAATGGGATGGAAA+TGG + chr1_1:58032065-58032084 Msa0031310:CDS 50.0%
GTCTGGCATTGTCCAGGTAT+TGG + chr1_1:58032172-58032191 Msa0031310:CDS 50.0%
!! TGTCCAGGTATTGGACCTGA+AGG + chr1_1:58032181-58032200 Msa0031310:CDS 50.0%
!! GTCCAGGTATTGGACCTGAA+GGG + chr1_1:58032182-58032201 Msa0031310:CDS 50.0%
TACCCTTCAGGTCCAATACC+TGG - chr1_1:58032187-58032206 None:intergenic 50.0%
GACCTGAAGGGTAACCTGAT+AGG + chr1_1:58032194-58032213 Msa0031310:CDS 50.0%
CCTGAAGGGTAACCTGATAG+GGG + chr1_1:58032196-58032215 Msa0031310:CDS 50.0%
CTGAAGGGTAACCTGATAGG+GGG + chr1_1:58032197-58032216 Msa0031310:CDS 50.0%
! TTCACATTGGCTAACCACGG+TGG + chr1_1:58032275-58032294 Msa0031310:CDS 50.0%
GGCACTTGGAATGTTGGACA+AGG + chr1_1:58032410-58032429 Msa0031310:CDS 50.0%
TGAGAGAGATAGGGGTTAGG+GGG - chr1_1:58032834-58032853 None:intergenic 50.0%
GCTTGAGAGAGATAGGGGTT+AGG - chr1_1:58032837-58032856 None:intergenic 50.0%
ATTGGATCCAGGCAACTTGC+AGG + chr1_1:58032947-58032966 Msa0031310:CDS 50.0%
CTGTGTGGTGAGTACCTATG+TGG + chr1_1:58032981-58033000 Msa0031310:intron 50.0%
GTGGAGAAATACACGTGAGC+TGG + chr1_1:58033000-58033019 Msa0031310:intron 50.0%
TCATGTTGGGGATGTTGAGG+CGG + chr1_1:58033325-58033344 Msa0031310:CDS 50.0%
ATAGCACGTCCAAAGCCACA+TGG - chr1_1:58033359-58033378 None:intergenic 50.0%
!! TGTGGCTTTGGACGTGCTAT+TGG + chr1_1:58033359-58033378 Msa0031310:CDS 50.0%
TGCTGCTATGCTTTGCAAGC+TGG + chr1_1:58033407-58033426 Msa0031310:intron 50.0%
TTGGTCCTTTCTGTTGCAGC+TGG + chr1_1:58034273-58034292 Msa0031310:intron 50.0%
! ATTGGTTTCCAGCCTGCAGA+AGG + chr1_1:58034413-58034432 Msa0031310:intron 50.0%
TTGGTTTCCAGCCTGCAGAA+GGG + chr1_1:58034414-58034433 Msa0031310:intron 50.0%
AACTCAGGTATCCCTTCTGC+AGG - chr1_1:58034428-58034447 None:intergenic 50.0%
GGATCAGCTTCGAGCTGAAA+TGG + chr1_1:58034565-58034584 Msa0031310:CDS 50.0%
CTTCGAGCTGAAATGGAAGC+TGG + chr1_1:58034572-58034591 Msa0031310:CDS 50.0%
TGCTTCACGCATTCCTTGGA+AGG - chr1_1:58034603-58034622 None:intergenic 50.0%
TGAACGACACCAAGCTGGTT+TGG + chr1_1:58034652-58034671 Msa0031310:CDS 50.0%
GTGTGTGTGTGTGTGTGTTG+AGG - chr1_1:58034688-58034707 None:intergenic 50.0%
GGTGCTTGCAACTTCATGGA+TGG + chr1_1:58035047-58035066 Msa0031310:intron 50.0%
AAAAGAAACGCATCCCTGCC+TGG + chr1_1:58035236-58035255 Msa0031310:CDS 50.0%
GCAGGCTTCGTACCTATTGA+AGG - chr1_1:58036152-58036171 None:intergenic 50.0%
CAATAGGTACGAAGCCTGCA+TGG + chr1_1:58036153-58036172 Msa0031310:intron 50.0%
GTAGAAAAGATGCAGCGCAC+AGG - chr1_1:58036202-58036221 None:intergenic 50.0%
CCAAACTCCTGTCTCCGTAT+TGG - chr1_1:58036247-58036266 None:intergenic 50.0%
CCAATACGGAGACAGGAGTT+TGG + chr1_1:58036244-58036263 Msa0031310:CDS 50.0%
GATGACTGACGAGTGTGTAG+TGG + chr1_1:58036865-58036884 Msa0031310:intron 50.0%
TGGAGATAAGACTGCTGAGG+TGG + chr1_1:58036885-58036904 Msa0031310:intron 50.0%
GAACGGCGCAGCAATAAATG+TGG - chr1_1:58037130-58037149 None:intergenic 50.0%
GTGTGAAGACTCCAGAGACA+AGG + chr1_1:58037519-58037538 Msa0031310:CDS 50.0%
AACAGTGGTGAACACGCACT+CGG - chr1_1:58037600-58037619 None:intergenic 50.0%
TAAAGGGCCACAAACGTCGT+CGG - chr1_1:58038329-58038348 None:intergenic 50.0%
CATGTTGTGACGAACCACGC+TGG - chr1_1:58027862-58027881 None:intergenic 55.0%
AGACCGAGCGTTTGGACAGA+AGG - chr1_1:58027904-58027923 None:intergenic 55.0%
TGAATTCAGGGAGAGGGAGG+TGG - chr1_1:58028209-58028228 None:intergenic 55.0%
CGATGAATTCAGGGAGAGGG+AGG - chr1_1:58028212-58028231 None:intergenic 55.0%
CCGCCTTTGGCGATGAATTC+AGG - chr1_1:58028222-58028241 None:intergenic 55.0%
GAATTCATCGCCAAAGGCGG+CGG + chr1_1:58028222-58028241 Msa0031310:CDS 55.0%
AGGAGGACGGGAAGGATGTA+CGG - chr1_1:58028280-58028299 None:intergenic 55.0%
TGAGTCTCGCGTAAGGGATG+GGG - chr1_1:58028318-58028337 None:intergenic 55.0%
CTGAGTCTCGCGTAAGGGAT+GGG - chr1_1:58028319-58028338 None:intergenic 55.0%
TCTGAGTCTCGCGTAAGGGA+TGG - chr1_1:58028320-58028339 None:intergenic 55.0%
CCCTTACGCGAGACTCAGAT+TGG + chr1_1:58028321-58028340 Msa0031310:CDS 55.0%
!! TTGCGACTCGGTCGCAACAA+TGG - chr1_1:58028361-58028380 None:intergenic 55.0%
! CTGCGACTGAACGTGGACTA+CGG + chr1_1:58028388-58028407 Msa0031310:CDS 55.0%
! CTGAACGTGGACTACGGTTC+TGG + chr1_1:58028394-58028413 Msa0031310:CDS 55.0%
TCGTGGTACGGTGGAGAAGT+AGG + chr1_1:58028438-58028457 Msa0031310:CDS 55.0%
TGGTACGGTGGAGAAGTAGG+TGG + chr1_1:58028441-58028460 Msa0031310:CDS 55.0%
GTGGAGAAGTAGGTGGTGTG+AGG + chr1_1:58028448-58028467 Msa0031310:CDS 55.0%
GAAGTAGGTGGTGTGAGGAG+TGG + chr1_1:58028453-58028472 Msa0031310:CDS 55.0%
! GACTTCGCCGGCGATTTGTT+TGG + chr1_1:58028512-58028531 Msa0031310:CDS 55.0%
! GCCGGCGATTTGTTTGGTTG+CGG + chr1_1:58028518-58028537 Msa0031310:CDS 55.0%
!! GGGAATAGGTTGGTGTGGAG+TGG + chr1_1:58028546-58028565 Msa0031310:CDS 55.0%
GATCTAGGGGATCTGTGGTC+GGG + chr1_1:58029643-58029662 Msa0031310:intron 55.0%
GATCTGTGGTCGGGTTCAGA+AGG + chr1_1:58029652-58029671 Msa0031310:CDS 55.0%
TGTGGTCGGGTTCAGAAGGA+GGG + chr1_1:58029656-58029675 Msa0031310:CDS 55.0%
! GACAGAGGAGGAAAGGCACA+AGG + chr1_1:58029726-58029745 Msa0031310:CDS 55.0%
CTGGCTCCTCAAGTCAACGT+AGG - chr1_1:58029773-58029792 None:intergenic 55.0%
! AAGGCAAAGGTGTGGAGTGC+TGG + chr1_1:58029859-58029878 Msa0031310:CDS 55.0%
! AGGCAAAGGTGTGGAGTGCT+GGG + chr1_1:58029860-58029879 Msa0031310:CDS 55.0%
CTCCTAGCAGCCTCTCTTAG+TGG + chr1_1:58029915-58029934 Msa0031310:intron 55.0%
CATCTCGGACAAAAGGCCCT+TGG - chr1_1:58030779-58030798 None:intergenic 55.0%
TATTCCGATGCATGCTGCCC+TGG + chr1_1:58031573-58031592 Msa0031310:intron 55.0%
TGCAACTCGGCGAACAGCAT+CGG - chr1_1:58031952-58031971 None:intergenic 55.0%
TGTTCGCCGAGTTGCAGCAA+AGG + chr1_1:58031956-58031975 Msa0031310:CDS 55.0%
GTTCGCCGAGTTGCAGCAAA+GGG + chr1_1:58031957-58031976 Msa0031310:CDS 55.0%
AGGCTCCCTTTGCTGCAACT+CGG - chr1_1:58031965-58031984 None:intergenic 55.0%
GTTGCAGCAAAGGGAGCCTT+TGG + chr1_1:58031966-58031985 Msa0031310:CDS 55.0%
!! CAAGTGGCTTGCTGGTGCAA+TGG + chr1_1:58032054-58032073 Msa0031310:CDS 55.0%
CCCCTATCAGGTTACCCTTC+AGG - chr1_1:58032199-58032218 None:intergenic 55.0%
AGGGTAACCTGATAGGGGGT+TGG + chr1_1:58032201-58032220 Msa0031310:CDS 55.0%
GGGTAACCTGATAGGGGGTT+GGG + chr1_1:58032202-58032221 Msa0031310:CDS 55.0%
TAACCTGATAGGGGGTTGGG+TGG + chr1_1:58032205-58032224 Msa0031310:CDS 55.0%
GGATGGAACATCACCTCTCC+AGG + chr1_1:58032305-58032324 Msa0031310:CDS 55.0%
GCTATCAAGAGGTCCTGGAG+AGG - chr1_1:58032321-58032340 None:intergenic 55.0%
GGTTCTGTGGCCTCAGATGT+TGG + chr1_1:58032467-58032486 Msa0031310:CDS 55.0%
CAAGAGGTTGAAATGGGCGC+TGG + chr1_1:58032509-58032528 Msa0031310:CDS 55.0%
! GACTGGAGGGTAGTTCTGCT+GGG + chr1_1:58032867-58032886 Msa0031310:CDS 55.0%
ATCCAGGCAACTTGCAGGCT+TGG + chr1_1:58032952-58032971 Msa0031310:CDS 55.0%
! CAGGCTTGGTCATTGCTGTG+TGG + chr1_1:58032966-58032985 Msa0031310:CDS 55.0%
GCAGCAGTTCCATGTGGCTT+TGG + chr1_1:58033347-58033366 Msa0031310:CDS 55.0%
!! ACCAGGGAGCTGTTGCTTTG+AGG + chr1_1:58034020-58034039 Msa0031310:intron 55.0%
!! CCAGGGAGCTGTTGCTTTGA+GGG + chr1_1:58034021-58034040 Msa0031310:intron 55.0%
GAAGCTGGGAATGCCTTCCA+AGG + chr1_1:58034587-58034606 Msa0031310:CDS 55.0%
!! ACCAAGCTGGTTTGGCAGGT+TGG + chr1_1:58034660-58034679 Msa0031310:intron 55.0%
TTGTAGGGTTGAGGTGGGGA+AGG + chr1_1:58034969-58034988 Msa0031310:intron 55.0%
TGTAGGGTTGAGGTGGGGAA+GGG + chr1_1:58034970-58034989 Msa0031310:intron 55.0%
CGAAGGGCAGACTACTGTAC+TGG + chr1_1:58036435-58036454 Msa0031310:CDS 55.0%
AGGGCAGACTACTGTACTGG+AGG + chr1_1:58036438-58036457 Msa0031310:CDS 55.0%
TGGATTGCCTAGGTGGCTTG+AGG + chr1_1:58036498-58036517 Msa0031310:CDS 55.0%
AGATGTGTGGCCACAGTAGC+CGG + chr1_1:58037178-58037197 Msa0031310:intron 55.0%
ACATAACACCCCGGCTACTG+TGG - chr1_1:58037191-58037210 None:intergenic 55.0%
TGACTCAACCAAACGGCTCC+AGG + chr1_1:58037641-58037660 Msa0031310:CDS 55.0%
TACACTTCCTTGGACGTGCC+TGG - chr1_1:58037662-58037681 None:intergenic 55.0%
CAACTGCCCTAACATGCCAC+TGG - chr1_1:58038099-58038118 None:intergenic 55.0%
CATGCAATCGAGACGGCGGT+TGG - chr1_1:58028151-58028170 None:intergenic 60.0%
GGAGCATGCAATCGAGACGG+CGG - chr1_1:58028155-58028174 None:intergenic 60.0%
TTCAGGGAGAGGGAGGTGGT+CGG - chr1_1:58028205-58028224 None:intergenic 60.0%
AGGACGGGAAGGATGTACGG+CGG - chr1_1:58028277-58028296 None:intergenic 60.0%
TCGAGAGAAGGAGGACGGGA+AGG - chr1_1:58028288-58028307 None:intergenic 60.0%
CTGTATGCGTCGTGGTACGG+TGG + chr1_1:58028429-58028448 Msa0031310:CDS 60.0%
CTGTGGTCGGGTTCAGAAGG+AGG + chr1_1:58029655-58029674 Msa0031310:CDS 60.0%
GTGGTCGGGTTCAGAAGGAG+GGG + chr1_1:58029657-58029676 Msa0031310:CDS 60.0%
CATGTCATAGGGGGCGACCA+GGG - chr1_1:58031593-58031612 None:intergenic 60.0%
TCATGTCATAGGGGGCGACC+AGG - chr1_1:58031594-58031613 None:intergenic 60.0%
!! AGCATCGGCTGCCCCCATTA+TGG - chr1_1:58031937-58031956 None:intergenic 60.0%
!! GGCTTGCTGGTGCAATGGGA+TGG + chr1_1:58032059-58032078 Msa0031310:CDS 60.0%
GCTAACCACGGTGGCATACG+AGG + chr1_1:58032284-58032303 Msa0031310:CDS 60.0%
ACCACGGTGGCATACGAGGA+TGG + chr1_1:58032288-58032307 Msa0031310:CDS 60.0%
TCCATCCTCGTATGCCACCG+TGG - chr1_1:58032292-58032311 None:intergenic 60.0%
! GGACTGGAGGGTAGTTCTGC+TGG + chr1_1:58032866-58032885 Msa0031310:CDS 60.0%
! AGGGTAGTTCTGCTGGGCAG+TGG + chr1_1:58032873-58032892 Msa0031310:CDS 60.0%
! GTAGTTCTGCTGGGCAGTGG+TGG + chr1_1:58032876-58032895 Msa0031310:CDS 60.0%
GACCAAGCCTGCAAGTTGCC+TGG - chr1_1:58032957-58032976 None:intergenic 60.0%
CCCTCAAAGCAACAGCTCCC+TGG - chr1_1:58034024-58034043 None:intergenic 60.0%
CAGGTATCCCTTCTGCAGGC+TGG - chr1_1:58034424-58034443 None:intergenic 60.0%
!! CGACACCAAGCTGGTTTGGC+AGG + chr1_1:58034656-58034675 Msa0031310:CDS 60.0%
GCCAACCTGCCAAACCAGCT+TGG - chr1_1:58034664-58034683 None:intergenic 60.0%
AGATGCAGCGCACAGGCTTG+TGG - chr1_1:58036195-58036214 None:intergenic 60.0%
GATGTGTGGCCACAGTAGCC+GGG + chr1_1:58037179-58037198 Msa0031310:intron 60.0%
ATGTGTGGCCACAGTAGCCG+GGG + chr1_1:58037180-58037199 Msa0031310:intron 60.0%
GCAATCGAGACGGCGGTTGG+TGG - chr1_1:58028148-58028167 None:intergenic 65.0%
GCGACCAGGGCAGCATGCAT+CGG - chr1_1:58031580-58031599 None:intergenic 65.0%
GAGCCACCCAACCCCCTATC+AGG - chr1_1:58032211-58032230 None:intergenic 65.0%
TTCTGCTGGGCAGTGGTGGC+TGG + chr1_1:58032880-58032899 Msa0031310:CDS 65.0%
GAGGCGGCAGCAGTTCCATG+TGG + chr1_1:58033341-58033360 Msa0031310:CDS 65.0%
TGGACGTGCCTGGAGCCGTT+TGG - chr1_1:58037652-58037671 None:intergenic 65.0%
AACGGCTCCAGGCACGTCCA+AGG + chr1_1:58037652-58037671 Msa0031310:CDS 65.0%
ATCGCCAAAGGCGGCGGTGC+CGG + chr1_1:58028228-58028247 Msa0031310:CDS 70.0%
GATTCCGGCACCGCCGCCTT+TGG - chr1_1:58028235-58028254 None:intergenic 70.0%
GGGAAGGATGTACGGCGGCG+CGG - chr1_1:58028272-58028291 None:intergenic 70.0%
TGTACGGCGGCGCGGAGAGG+AGG - chr1_1:58028264-58028283 None:intergenic 75.0%
GGATGTACGGCGGCGCGGAG+AGG - chr1_1:58028267-58028286 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 58027848 58038391 58027848 ID=Msa0031310;Name=Msa0031310
chr1_1 mRNA 58027848 58038391 58027848 ID=Msa0031310-mRNA-1;Parent=Msa0031310;Name=Msa0031310-mRNA-1;_AED=0.08;_eAED=0.08;_QI=155|1|1|1|0.90|0.83|12|479|1079
chr1_1 exon 58027848 58028687 58027848 ID=Msa0031310-mRNA-1:exon:17611;Parent=Msa0031310-mRNA-1
chr1_1 exon 58029650 58029902 58029650 ID=Msa0031310-mRNA-1:exon:17612;Parent=Msa0031310-mRNA-1
chr1_1 exon 58031770 58032562 58031770 ID=Msa0031310-mRNA-1:exon:17613;Parent=Msa0031310-mRNA-1
chr1_1 exon 58032863 58032987 58032863 ID=Msa0031310-mRNA-1:exon:17614;Parent=Msa0031310-mRNA-1
chr1_1 exon 58033304 58033388 58033304 ID=Msa0031310-mRNA-1:exon:17615;Parent=Msa0031310-mRNA-1
chr1_1 exon 58034025 58034190 58034025 ID=Msa0031310-mRNA-1:exon:17616;Parent=Msa0031310-mRNA-1
chr1_1 exon 58034292 58034332 58034292 ID=Msa0031310-mRNA-1:exon:17617;Parent=Msa0031310-mRNA-1
chr1_1 exon 58034425 58034677 58034425 ID=Msa0031310-mRNA-1:exon:17618;Parent=Msa0031310-mRNA-1
chr1_1 exon 58035221 58035344 58035221 ID=Msa0031310-mRNA-1:exon:17619;Parent=Msa0031310-mRNA-1
chr1_1 exon 58036159 58036519 58036159 ID=Msa0031310-mRNA-1:exon:17620;Parent=Msa0031310-mRNA-1
chr1_1 exon 58037406 58037772 58037406 ID=Msa0031310-mRNA-1:exon:17621;Parent=Msa0031310-mRNA-1
chr1_1 exon 58037926 58038391 58037926 ID=Msa0031310-mRNA-1:exon:17622;Parent=Msa0031310-mRNA-1
chr1_1 five_prime_UTR 58027848 58028002 58027848 ID=Msa0031310-mRNA-1:five_prime_utr;Parent=Msa0031310-mRNA-1
chr1_1 CDS 58028003 58028687 58028003 ID=Msa0031310-mRNA-1:cds;Parent=Msa0031310-mRNA-1
chr1_1 CDS 58029650 58029902 58029650 ID=Msa0031310-mRNA-1:cds;Parent=Msa0031310-mRNA-1
chr1_1 CDS 58031770 58032562 58031770 ID=Msa0031310-mRNA-1:cds;Parent=Msa0031310-mRNA-1
chr1_1 CDS 58032863 58032987 58032863 ID=Msa0031310-mRNA-1:cds;Parent=Msa0031310-mRNA-1
chr1_1 CDS 58033304 58033388 58033304 ID=Msa0031310-mRNA-1:cds;Parent=Msa0031310-mRNA-1
chr1_1 CDS 58034025 58034190 58034025 ID=Msa0031310-mRNA-1:cds;Parent=Msa0031310-mRNA-1
chr1_1 CDS 58034292 58034332 58034292 ID=Msa0031310-mRNA-1:cds;Parent=Msa0031310-mRNA-1
chr1_1 CDS 58034425 58034677 58034425 ID=Msa0031310-mRNA-1:cds;Parent=Msa0031310-mRNA-1
chr1_1 CDS 58035221 58035344 58035221 ID=Msa0031310-mRNA-1:cds;Parent=Msa0031310-mRNA-1
chr1_1 CDS 58036159 58036519 58036159 ID=Msa0031310-mRNA-1:cds;Parent=Msa0031310-mRNA-1
chr1_1 CDS 58037406 58037759 58037406 ID=Msa0031310-mRNA-1:cds;Parent=Msa0031310-mRNA-1
chr1_1 three_prime_UTR 58037760 58037772 58037760 ID=Msa0031310-mRNA-1:three_prime_utr;Parent=Msa0031310-mRNA-1
chr1_1 three_prime_UTR 58037926 58038391 58037926 ID=Msa0031310-mRNA-1:three_prime_utr;Parent=Msa0031310-mRNA-1
Gene Sequence

>Msa0031310

ATGGATCCACTTCACCAAAACGACGCTTCTTCATCTTTTCCACTGTCGTCTACTCCTCAACAACGCACTTTCTTATATTCACGTTCCTCTTCTTCTTCTTCCAACGACAACGACGACGTTTCATCCTCCAATTCTATTCATTCCACCAACCGCCGTCTCGATTGCATGCTCCAATTCCTCGACCGTAAACTCACTATCTCCGACCACCTCCCTCTCCCTGAATTCATCGCCAAAGGCGGCGGTGCCGGAATCTTCAAACCTCCTCTCCGCGCCGCCGTACATCCTTCCCGTCCTCCTTCTCTCGAATTACGTCCCCATCCCTTACGCGAGACTCAGATTGGACGGTTTTTACGCACCATTGTTGCGACCGAGTCGCAATTATGGTCTGCGACTGAACGTGGACTACGGTTCTGGAATTTTAAAGATCTGTATGCGTCGTGGTACGGTGGAGAAGTAGGTGGTGTGAGGAGTGGTGATGAAGAGAGTGCACCGTTTCGTGAATCGGTTTGGACTTCGCCGGCGATTTGTTTGGTTGCGGATGAAGGGAATAGGTTGGTGTGGAGTGGACATAGAGATGGGAAGATTCGCTGTTGGTATATGGATTCTCAGAATTCCGATTTTAATGAAAGATTATCTTGGCAAGCTCATCGTGGACCTGTTCTTTCAATCACAATCACTTCTTATGGGGATCTGTGGTCGGGTTCAGAAGGAGGGGTTATAAAAATATGGCCTTGGGAGGCTGTTGAAAAATCTATTCATCTGACAGAGGAGGAAAGGCACAAGGCTGTCATATTCATCGAGAGATCCTACGTTGACTTGAGGAGCCAGCTATCTACAAATGGCTACAATAACATGCTAACTTCAGATATAAAGTACTTAGTATCAGATAATTCAAAGGCAAAGGTGTGGAGTGCTGGGTATTTTTCATATGCTTTATGGGATGCTCGTACAAGAGAGTTGTTGAAAGTTTTCAATTCAGATGGCCAAATGGAGAATCGATCAGACTTGCCTTCAATGCAAGACTTTCCGGCTGACCTTGTTTCAAGTTCTAGGAAAGACAGAAGCCAAAGTTCCATTGGGTTCTTTCAGCGCTCACGTAATGCCATAATGGGGGCAGCCGATGCTGTTCGCCGAGTTGCAGCAAAGGGAGCCTTTGGAGATGAGAATCGGAGAACTGAAGCACTTGTAGTAACAATTGATGGAATGATTTGGACAGGATATTCAAGTGGCTTGCTGGTGCAATGGGATGGAAATGGCAATCGCATACAGGATTTTATTTACCACCCATTTGCTGTTCAATGTTTTTGTACTTATGGAATGCAAATTTGGGTAGGTTATGTGTCTGGCATTGTCCAGGTATTGGACCTGAAGGGTAACCTGATAGGGGGTTGGGTGGCTCATAGCTGTCCAGTTGTAAAAATGACAGTTGGAGTTGGCTATGTATTCACATTGGCTAACCACGGTGGCATACGAGGATGGAACATCACCTCTCCAGGACCTCTTGATAGCATTTTGTGTTCAGAATTGGGCGGCAAAGAATTTTTATATACTAAAATAGAAAACATAAAGATCTTGAGTGGCACTTGGAATGTTGGACAAGGAAAAGCATCTCAAGATTCCCTTACTTCATGGCTAGGTTCTGTGGCCTCAGATGTTGGCCTTGTTGTTGTTGGGTTGCAAGAGGTTGAAATGGGCGCTGGATTTCTTGCAATGTCTGCAGCTAAAGAAACTGTAGGACTGGAGGGTAGTTCTGCTGGGCAGTGGTGGCTGGATATGATAGACAAAACACTGGATGAAGGTTCAACATTTAAACGAATTGGATCCAGGCAACTTGCAGGCTTGGTCATTGCTGTGTGGGTTAAAACAAACATTAGACTTCATGTTGGGGATGTTGAGGCGGCAGCAGTTCCATGTGGCTTTGGACGTGCTATTGGAAATAAGGGAGCTGTTGCTTTGAGGGTTAGAGTGTATGATCGGATTATGTGCTTTGTTAATTGTCACTTTGCTGCACATTTAGATGCAGTTGGTCGTCGCAATTCAGATTTTGATTATGTATACCGAACAATGTCCTTTAGTCGACCAACAAACCTCTTAAATACAACACCTGCTGGAACTTCAGCTTCTATTCCAATGTTTCGTGGTACAAATCCTGCAGAAGGGATACCTGAGTTATCTGAGGCAGACATGATTGTATTTCTTGGTGATTTGAACTATCGTCTTGATGACATTTCGTATGATGAAGCAAGAGATTTTGTATCTCAAAGATGCTTTGATTGGCTTAGAGAAAGGGATCAGCTTCGAGCTGAAATGGAAGCTGGGAATGCCTTCCAAGGAATGCGTGAAGCAGTAATAACATTTCCTCCCACATACAAGTTTGAACGACACCAAGCTGGTTTGGCAGGGTATGACTCTGGTGAAAAGAAACGCATCCCTGCCTGGTGTGACAGAATTTTGTATCGTGATAGTCGCTCTTCTTTGATTGCTGAATGCAATTTGGAGTACCCTGTTGTCTCTTCAGTATTGCAGTACGAAGCCTGCATGGATGTCACAGATAGTGACCACAAGCCTGTGCGCTGCATCTTTTCTACAGATATTGCTCGAGTAGATGAACCAATACGGAGACAGGAGTTTGGAGAAATTCTCGAGTCAAATGAGAAAATAAAATGTCTTCTGAAAGAATTGTACAAGATTCCTGAAACTATCATAAGTACAAACAACATAATTCTTCAAAACCAGGACACATTAATTTTGCGTATTACTAATAAAAGTACAGAAGACAATGCTTTGTTCGAAATAATTTGCGAAGGGCAGACTACTGTACTGGAGGATCAGAAGGCAACAAACCATCAGTTGAGAGGTTCTTTTGGATTGCCTAGGTGGCTTGAGGTAAGTCCTGCAACTGGTATTATAAGACCAGATCAGATTATTGAGGTATCAGTGCATCATGAGGAATTTCAGACTCAGGAAGAGTTTGTTGATGGTGTTGTACAAAACTCTTGGTGTGAAGACTCCAGAGACAAGGAAGCAATTTTGATTGTTAAGGTGCATGGGAATTACGCTATTCAGACAAGAAATCACCGAGTGCGTGTTCACCACTGTTATTCATCCAAGAAAAACCAATTGACTCAACCAAACGGCTCCAGGCACGTCCAAGGAAGTGTACTTCACCGATCTGATTTTCAACGTTTGAGCAATTCATTTGATGTGGTTGACCAGCTGCATAAATTGCATAGCCCTTGA
Protein sequence

>Msa0031310

MDPLHQNDASSSFPLSSTPQQRTFLYSRSSSSSSNDNDDVSSSNSIHSTNRRLDCMLQFLDRKLTISDHLPLPEFIAKGGGAGIFKPPLRAAVHPSRPPSLELRPHPLRETQIGRFLRTIVATESQLWSATERGLRFWNFKDLYASWYGGEVGGVRSGDEESAPFRESVWTSPAICLVADEGNRLVWSGHRDGKIRCWYMDSQNSDFNERLSWQAHRGPVLSITITSYGDLWSGSEGGVIKIWPWEAVEKSIHLTEEERHKAVIFIERSYVDLRSQLSTNGYNNMLTSDIKYLVSDNSKAKVWSAGYFSYALWDARTRELLKVFNSDGQMENRSDLPSMQDFPADLVSSSRKDRSQSSIGFFQRSRNAIMGAADAVRRVAAKGAFGDENRRTEALVVTIDGMIWTGYSSGLLVQWDGNGNRIQDFIYHPFAVQCFCTYGMQIWVGYVSGIVQVLDLKGNLIGGWVAHSCPVVKMTVGVGYVFTLANHGGIRGWNITSPGPLDSILCSELGGKEFLYTKIENIKILSGTWNVGQGKASQDSLTSWLGSVASDVGLVVVGLQEVEMGAGFLAMSAAKETVGLEGSSAGQWWLDMIDKTLDEGSTFKRIGSRQLAGLVIAVWVKTNIRLHVGDVEAAAVPCGFGRAIGNKGAVALRVRVYDRIMCFVNCHFAAHLDAVGRRNSDFDYVYRTMSFSRPTNLLNTTPAGTSASIPMFRGTNPAEGIPELSEADMIVFLGDLNYRLDDISYDEARDFVSQRCFDWLRERDQLRAEMEAGNAFQGMREAVITFPPTYKFERHQAGLAGYDSGEKKRIPAWCDRILYRDSRSSLIAECNLEYPVVSSVLQYEACMDVTDSDHKPVRCIFSTDIARVDEPIRRQEFGEILESNEKIKCLLKELYKIPETIISTNNIILQNQDTLILRITNKSTEDNALFEIICEGQTTVLEDQKATNHQLRGSFGLPRWLEVSPATGIIRPDQIIEVSVHHEEFQTQEEFVDGVVQNSWCEDSRDKEAILIVKVHGNYAIQTRNHRVRVHHCYSSKKNQLTQPNGSRHVQGSVLHRSDFQRLSNSFDVVDQLHKLHSP*