AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1435400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1435400 MtrunA17_Chr7g0237691 90.076 393 1 2 1 392 1 356 0.0 659
Msa1435400 MtrunA17_Chr4g0063281 38.545 275 122 7 19 291 43 272 7.45e-58 192
Msa1435400 MtrunA17_Chr3g0115161 61.165 103 40 0 180 282 128 230 4.25e-38 139
Msa1435400 MtrunA17_Chr3g0115161 46.591 88 41 2 24 111 48 129 2.62e-16 79.0
Msa1435400 MtrunA17_Chr4g0051231 46.939 147 67 2 141 279 90 233 2.04e-36 136
Msa1435400 MtrunA17_Chr4g0051231 70.000 50 15 0 19 68 46 95 5.34e-19 87.8
Msa1435400 MtrunA17_Chr1g0148061 46.479 142 71 2 174 315 94 230 1.38e-33 127
Msa1435400 MtrunA17_Chr1g0148061 62.069 58 22 0 10 67 12 69 2.25e-16 79.3
Msa1435400 MtrunA17_Chr8g0378741 50.000 90 45 0 177 266 131 220 3.68e-25 106
Msa1435400 MtrunA17_Chr8g0378741 52.113 71 34 0 19 89 41 111 1.16e-17 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1435400 AT3G24740.3 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1435400 AT3G24740.1 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1435400 AT3G24740.5 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1435400 AT3G24740.6 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1435400 AT3G24740.2 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1435400 AT3G24740.4 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1435400 AT3G25910.1 36.965 257 139 4 19 275 36 269 2.00e-50 174
Msa1435400 AT4G31410.1 48.889 135 64 1 182 316 102 231 1.86e-35 132
Msa1435400 AT4G31410.1 55.357 56 23 1 22 77 30 83 1.95e-14 73.9
Msa1435400 AT4G31410.2 48.889 135 64 1 182 316 102 231 1.86e-35 132
Msa1435400 AT4G31410.2 55.357 56 23 1 22 77 30 83 1.95e-14 73.9
Msa1435400 AT4G31410.3 48.889 135 64 1 182 316 102 231 1.86e-35 132
Msa1435400 AT4G31410.3 55.357 56 23 1 22 77 30 83 1.95e-14 73.9
Msa1435400 AT4G08460.4 48.624 109 56 0 175 283 100 208 6.93e-33 124
Msa1435400 AT4G08460.4 51.786 56 25 1 24 77 47 102 5.22e-14 72.0
Msa1435400 AT4G08460.1 48.624 109 56 0 175 283 100 208 6.93e-33 124
Msa1435400 AT4G08460.1 51.786 56 25 1 24 77 47 102 5.22e-14 72.0
Msa1435400 AT4G08460.2 48.624 109 56 0 175 283 100 208 6.93e-33 124
Msa1435400 AT4G08460.2 51.786 56 25 1 24 77 47 102 5.22e-14 72.0
Msa1435400 AT4G08460.3 48.624 109 56 0 175 283 100 208 6.93e-33 124
Msa1435400 AT4G08460.3 51.786 56 25 1 24 77 47 102 5.22e-14 72.0
Msa1435400 AT1G68140.2 47.115 104 55 0 180 283 118 221 7.97e-30 117
Msa1435400 AT1G68140.2 68.000 50 16 0 19 68 48 97 1.31e-17 83.2
Msa1435400 AT1G68140.1 47.115 104 55 0 180 283 118 221 1.20e-29 117
Msa1435400 AT1G68140.1 68.000 50 16 0 19 68 48 97 1.48e-17 83.6
Msa1435400 AT1G68140.4 47.115 104 55 0 180 283 118 221 1.20e-29 117
Msa1435400 AT1G68140.4 68.000 50 16 0 19 68 48 97 1.48e-17 83.6
Msa1435400 AT1G68140.3 47.115 104 55 0 180 283 118 221 1.20e-29 117
Msa1435400 AT1G68140.3 68.000 50 16 0 19 68 48 97 1.48e-17 83.6
Msa1435400 AT1G77770.3 49.000 100 51 0 180 279 85 184 6.30e-27 108
Msa1435400 AT1G77770.3 55.556 54 24 0 19 72 24 77 3.10e-14 72.8
Msa1435400 AT1G77770.2 49.000 100 51 0 180 279 85 184 6.30e-27 108
Msa1435400 AT1G77770.2 55.556 54 24 0 19 72 24 77 3.10e-14 72.8
Msa1435400 AT1G77770.1 49.000 100 51 0 180 279 85 184 6.70e-27 108
Msa1435400 AT1G77770.1 50.000 66 32 1 19 83 24 89 2.80e-14 72.8
Msa1435400 AT2G26050.1 42.353 85 48 1 179 262 71 155 1.11e-16 79.0
Msa1435400 AT1G15430.1 39.535 86 52 0 179 264 106 191 1.50e-16 79.3
Msa1435400 AT1G15430.1 63.830 47 17 0 20 66 47 93 6.37e-14 71.6
Msa1435400 AT1G15430.2 39.535 86 52 0 179 264 106 191 1.50e-16 79.3
Msa1435400 AT1G15430.2 63.830 47 17 0 20 66 47 93 6.37e-14 71.6
Msa1435400 AT1G80220.1 39.806 103 59 2 179 280 100 200 2.49e-16 78.6
Msa1435400 AT1G80220.1 53.571 56 22 1 22 73 43 98 9.71e-12 65.1

Find 106 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAAGAACTTTGTAAATT+TGG 0.086986 tig0027701:-38853 Msa1435400:intergenic
CTGACCGTCGTCGCTATCTT+TGG 0.205802 tig0027701:+39640 Msa1435400:CDS
CTCATTTGCTGGAGATTATC+TGG 0.236537 tig0027701:+39266 Msa1435400:CDS
GGGGATTACGTTCTCGAAAA+TGG 0.268380 tig0027701:+39444 Msa1435400:CDS
ACATTTGTGATACAAGTTAT+AGG 0.274353 tig0027701:+38776 Msa1435400:CDS
CTATGTAGGGGCACAGTATT+AGG 0.283301 tig0027701:+39174 Msa1435400:CDS
TTAAAGAACTTTGTAAATTT+GGG 0.285619 tig0027701:-38852 Msa1435400:intergenic
ATAGAGTATTAATTTCATTT+TGG 0.288715 tig0027701:-38963 Msa1435400:intergenic
CAATGGTGTTATCCATCATT+TGG 0.297444 tig0027701:-39557 Msa1435400:intergenic
TGACCGTCGTCGCTATCTTT+GGG 0.306879 tig0027701:+39641 Msa1435400:CDS
ATAACACCATTGAAATTGTT+AGG 0.318676 tig0027701:+39568 Msa1435400:CDS
TGCCACGCTTGTTCTCTTGT+CGG 0.342123 tig0027701:-39345 Msa1435400:intergenic
AGGGATTCATGCTCATTTGC+TGG 0.342371 tig0027701:+39255 Msa1435400:CDS
TTTGAGCGCCAGAGAGAATA+TGG 0.354225 tig0027701:+39372 Msa1435400:CDS
TACCAGGAGCTGTGGTAGTT+GGG 0.361459 tig0027701:+39424 Msa1435400:CDS
CTAAATGTCTACTTGGATCT+TGG 0.362438 tig0027701:-39026 Msa1435400:intergenic
GTTTGCATTGTCCTCTATGT+AGG 0.375371 tig0027701:+39160 Msa1435400:CDS
TACCAGGTGGTGGTAGGGAG+GGG 0.376072 tig0027701:+39484 Msa1435400:CDS
CTTTGGGGTGAGAATTTGTT+GGG 0.387062 tig0027701:+39657 Msa1435400:CDS
TCTACGAATATTTAATGAAC+TGG 0.389467 tig0027701:+39707 Msa1435400:CDS
GTTAATATCAAAACTATTAC+CGG 0.394163 tig0027701:-38893 Msa1435400:intergenic
GCATGCTCTTCACAGAGAAT+TGG 0.394274 tig0027701:+38666 Msa1435400:CDS
TTCAAACGACGGCGCCTCCT+TGG 0.409832 tig0027701:-39750 Msa1435400:intergenic
TTATAGGCATTCAAATTGTC+TGG 0.411863 tig0027701:+38792 Msa1435400:CDS
TGCTGATTCTGAGAACTTGC+AGG 0.412339 tig0027701:+39077 Msa1435400:CDS
ATAAACACTAACAACTCTTC+CGG 0.422488 tig0027701:+38874 Msa1435400:CDS
ACTTTGCAGCTCTCATGATA+AGG 0.425611 tig0027701:+38741 Msa1435400:CDS
ATTAATACTCTATTGTCTGT+TGG 0.425972 tig0027701:+38973 Msa1435400:CDS
CCATTTGAAGAACGAGCTCT+TGG 0.431014 tig0027701:-39594 Msa1435400:intergenic
TCTTTGGGGTGAGAATTTGT+TGG 0.432599 tig0027701:+39656 Msa1435400:CDS
CCAAGAGCTCGTTCTTCAAA+TGG 0.433577 tig0027701:+39594 Msa1435400:CDS
ATTCTGAGAACTTGCAGGAC+AGG 0.434425 tig0027701:+39082 Msa1435400:CDS
TAAATGTCTACTTGGATCTT+GGG 0.439889 tig0027701:-39025 Msa1435400:intergenic
TTTGCATTGTCCTCTATGTA+GGG 0.447980 tig0027701:+39161 Msa1435400:CDS
CACCATCTTGTTCCAAATGA+TGG 0.449976 tig0027701:+39545 Msa1435400:CDS
TCAAACGACGGCGCCTCCTT+GGG 0.458119 tig0027701:-39749 Msa1435400:intergenic
TGGTTCCCTAACAATTTCAA+TGG 0.459007 tig0027701:-39574 Msa1435400:intergenic
CTTTGCAGCTCTCATGATAA+GGG 0.464712 tig0027701:+38742 Msa1435400:CDS
GGAGGCGCCGTCGTTTGAAT+AGG 0.466130 tig0027701:+39754 Msa1435400:CDS
GTTACCAGGTGGTGGTAGGG+AGG 0.472492 tig0027701:+39482 Msa1435400:CDS
TAACACCATTGAAATTGTTA+GGG 0.485966 tig0027701:+39569 Msa1435400:CDS
CAATATCACCATATTCTCTC+TGG 0.489351 tig0027701:-39380 Msa1435400:intergenic
CTCGAAAATGGAGATGGTAT+TGG 0.491652 tig0027701:+39456 Msa1435400:CDS
TTGGAACAAGATGGTGGTAG+TGG 0.494227 tig0027701:-39538 Msa1435400:intergenic
GATGGTATTGGTAGGTTACC+AGG 0.501983 tig0027701:+39468 Msa1435400:CDS
GCAGGACAGGGCTGTTCTTG+AGG 0.502162 tig0027701:+39095 Msa1435400:CDS
TGTGGATGGTCCATGCAGAT+AGG 0.502449 tig0027701:-38703 Msa1435400:intergenic
AATTCCACAAGGATCGAGAC+AGG 0.502538 tig0027701:+38996 Msa1435400:CDS
GTAGGTTACCAGGTGGTGGT+AGG 0.505182 tig0027701:+39478 Msa1435400:CDS
ATACCAGGAGCTGTGGTAGT+TGG 0.506423 tig0027701:+39423 Msa1435400:CDS
TGGAATTGCGTAGGCATGCT+AGG 0.511583 tig0027701:+39286 Msa1435400:CDS
TAGGTTACCAGGTGGTGGTA+GGG 0.512795 tig0027701:+39479 Msa1435400:CDS
GACCGTCGTCGCTATCTTTG+GGG 0.514814 tig0027701:+39642 Msa1435400:CDS
GCTATTCAGTCTGCCATACC+AGG 0.516031 tig0027701:+39408 Msa1435400:CDS
TGTTGGTCTAAATGTCTACT+TGG 0.518204 tig0027701:-39033 Msa1435400:intergenic
CAAACTCGACTTTGAGTCCT+CGG 0.522532 tig0027701:-39142 Msa1435400:intergenic
GGTGGTAGGGAGGGGAGCAA+TGG 0.523498 tig0027701:+39492 Msa1435400:CDS
CTAAAATGCCTTCATCATGT+TGG 0.523887 tig0027701:-39050 Msa1435400:intergenic
ACATCAGAGGGACGAGAAGT+AGG 0.527291 tig0027701:-39318 Msa1435400:intergenic
TATCATGAGAGCTGCAAAGT+AGG 0.528215 tig0027701:-38738 Msa1435400:intergenic
CAATCATGAATGATCTTCGT+TGG 0.532620 tig0027701:-39784 Msa1435400:intergenic
TTCTGAGAACTTGCAGGACA+GGG 0.533978 tig0027701:+39083 Msa1435400:CDS
ATTGGTAGGTTACCAGGTGG+TGG 0.534392 tig0027701:+39474 Msa1435400:CDS
TTACCAGGTGGTGGTAGGGA+GGG 0.536579 tig0027701:+39483 Msa1435400:CDS
CTCCCCTCCCTACCACCACC+TGG 0.537599 tig0027701:-39486 Msa1435400:intergenic
ATCCATCATTTGGAACAAGA+TGG 0.540246 tig0027701:-39547 Msa1435400:intergenic
AACTACCACAGCTCCTGGTA+TGG 0.541534 tig0027701:-39421 Msa1435400:intergenic
TCCCCAACTACCACAGCTCC+TGG 0.541696 tig0027701:-39426 Msa1435400:intergenic
ACCAGGAGCTGTGGTAGTTG+GGG 0.553461 tig0027701:+39425 Msa1435400:CDS
CACGGTGCGAGGAAGATGGC+TGG 0.561637 tig0027701:+38610 None:intergenic
AGGCTGGGAGGTTGTTGAAG+AGG 0.565561 tig0027701:+39194 Msa1435400:CDS
CATTTAGACCAACATGATGA+AGG 0.566826 tig0027701:+39042 Msa1435400:CDS
GAGCTCGTTCTTCAAATGGA+TGG 0.567465 tig0027701:+39598 Msa1435400:CDS
AGTAGGAGAACAGCATTATG+TGG 0.571923 tig0027701:-38721 Msa1435400:intergenic
AGGGAGGGGAGCAATGGCAA+TGG 0.578428 tig0027701:+39498 Msa1435400:CDS
TCACCCTGTCTCGATCCTTG+TGG 0.586932 tig0027701:-39000 Msa1435400:intergenic
GTCTGCCATACCAGGAGCTG+TGG 0.587043 tig0027701:+39416 Msa1435400:CDS
TTGCATTGTCCTCTATGTAG+GGG 0.587725 tig0027701:+39162 Msa1435400:CDS
ATAAGAAGAGAAGTTGCTCA+AGG 0.588030 tig0027701:+39235 Msa1435400:CDS
GGAGAACAGCATTATGTGGA+TGG 0.588463 tig0027701:-38717 Msa1435400:intergenic
TACGTTCTCGAAAATGGAGA+TGG 0.597289 tig0027701:+39450 Msa1435400:CDS
AATACTGTGCCCCTACATAG+AGG 0.600766 tig0027701:-39171 Msa1435400:intergenic
GAGATTATCTGGAATTGCGT+AGG 0.608619 tig0027701:+39277 Msa1435400:CDS
ATGGCAATGGTAATGTACCT+TGG 0.614535 tig0027701:+39511 Msa1435400:CDS
AGTTTCATGTCCTATCTGCA+TGG 0.615030 tig0027701:+38693 Msa1435400:CDS
TAAGAAGAGAAGTTGCTCAA+GGG 0.617758 tig0027701:+39236 Msa1435400:CDS
GTTCTTCAAATGGATGGTCA+AGG 0.631888 tig0027701:+39604 Msa1435400:CDS
TAGGGGCACAGTATTAGGCT+GGG 0.632550 tig0027701:+39179 Msa1435400:CDS
AAAATGGAGATGGTATTGGT+AGG 0.633136 tig0027701:+39460 Msa1435400:CDS
GGACAGGGCTGTTCTTGAGG+AGG 0.634510 tig0027701:+39098 Msa1435400:CDS
AAAATTGAGAGACAACTCTA+CGG 0.637192 tig0027701:+38825 Msa1435400:CDS
AAGATGCATCTCATGTCCCA+AGG 0.639920 tig0027701:+39733 Msa1435400:CDS
TCTTGTCGGATCAACATCAG+AGG 0.652568 tig0027701:-39331 Msa1435400:intergenic
CATCATTTGGAACAAGATGG+TGG 0.659005 tig0027701:-39544 Msa1435400:intergenic
ACCTCGTCCTATTCAAACGA+CGG 0.662069 tig0027701:-39761 Msa1435400:intergenic
TTGTCTGTTGGAATTCCACA+AGG 0.662938 tig0027701:+38985 Msa1435400:CDS
ATTCCACAAGGATCGAGACA+GGG 0.664648 tig0027701:+38997 Msa1435400:CDS
CTTGTCGGATCAACATCAGA+GGG 0.668547 tig0027701:-39330 Msa1435400:intergenic
CACCCCAAAGATAGCGACGA+CGG 0.669001 tig0027701:-39644 Msa1435400:intergenic
ATCCGACAAGAGAACAAGCG+TGG 0.676885 tig0027701:+39343 Msa1435400:CDS
AGATGTAGATAATTCATCCG+AGG 0.680649 tig0027701:+39125 Msa1435400:CDS
GCCGTCGTTTGAATAGGACG+AGG 0.693738 tig0027701:+39760 Msa1435400:CDS
ATGCATCTCATGTCCCAAGG+AGG 0.718218 tig0027701:+39736 Msa1435400:CDS
GGGCACAGTATTAGGCTGGG+AGG 0.723334 tig0027701:+39182 Msa1435400:CDS
ATGGTGGTAGTGGTTAACCA+AGG 0.736997 tig0027701:-39528 Msa1435400:intergenic
GGTATTGGTAGGTTACCAGG+TGG 0.762448 tig0027701:+39471 Msa1435400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAGAACTTTGTAAATTT+GGG - tig0027701:38855-38874 Msa1435400:intergenic 15.0%
!! ATTAAAGAACTTTGTAAATT+TGG - tig0027701:38856-38875 Msa1435400:intergenic 15.0%
!!! ATAGAGTATTAATTTCATTT+TGG - tig0027701:38966-38985 Msa1435400:intergenic 15.0%
!! TTAAAGAACTTTGTAAATTT+GGG - tig0027701:38855-38874 Msa1435400:intergenic 15.0%
!! ATTAAAGAACTTTGTAAATT+TGG - tig0027701:38856-38875 Msa1435400:intergenic 15.0%
!!! ATAGAGTATTAATTTCATTT+TGG - tig0027701:38966-38985 Msa1435400:intergenic 15.0%
!!! TGTCTCTCAATTTTTTAAAT+CGG - tig0027701:38819-38838 Msa1435400:intergenic 20.0%
!! GTTAATATCAAAACTATTAC+CGG - tig0027701:38896-38915 Msa1435400:intergenic 20.0%
!!! TGTCTCTCAATTTTTTAAAT+CGG - tig0027701:38819-38838 Msa1435400:intergenic 20.0%
!! GTTAATATCAAAACTATTAC+CGG - tig0027701:38896-38915 Msa1435400:intergenic 20.0%
! ACATTTGTGATACAAGTTAT+AGG + tig0027701:38776-38795 Msa1435400:CDS 25.0%
! ATTAATACTCTATTGTCTGT+TGG + tig0027701:38973-38992 Msa1435400:CDS 25.0%
! ATAACACCATTGAAATTGTT+AGG + tig0027701:39568-39587 Msa1435400:CDS 25.0%
! TAACACCATTGAAATTGTTA+GGG + tig0027701:39569-39588 Msa1435400:CDS 25.0%
! TCTACGAATATTTAATGAAC+TGG + tig0027701:39707-39726 Msa1435400:CDS 25.0%
! ACATTTGTGATACAAGTTAT+AGG + tig0027701:38776-38795 Msa1435400:CDS 25.0%
! ATTAATACTCTATTGTCTGT+TGG + tig0027701:38973-38992 Msa1435400:CDS 25.0%
! ATAACACCATTGAAATTGTT+AGG + tig0027701:39568-39587 Msa1435400:CDS 25.0%
! TAACACCATTGAAATTGTTA+GGG + tig0027701:39569-39588 Msa1435400:CDS 25.0%
! TCTACGAATATTTAATGAAC+TGG + tig0027701:39707-39726 Msa1435400:CDS 25.0%
TTATAGGCATTCAAATTGTC+TGG + tig0027701:38792-38811 Msa1435400:CDS 30.0%
AAAATTGAGAGACAACTCTA+CGG + tig0027701:38825-38844 Msa1435400:CDS 30.0%
ATAAACACTAACAACTCTTC+CGG + tig0027701:38874-38893 Msa1435400:CDS 30.0%
TAAATGTCTACTTGGATCTT+GGG - tig0027701:39028-39047 Msa1435400:intergenic 30.0%
TTATAGGCATTCAAATTGTC+TGG + tig0027701:38792-38811 Msa1435400:CDS 30.0%
AAAATTGAGAGACAACTCTA+CGG + tig0027701:38825-38844 Msa1435400:CDS 30.0%
ATAAACACTAACAACTCTTC+CGG + tig0027701:38874-38893 Msa1435400:CDS 30.0%
TAAATGTCTACTTGGATCTT+GGG - tig0027701:39028-39047 Msa1435400:intergenic 30.0%
CTAAATGTCTACTTGGATCT+TGG - tig0027701:39029-39048 Msa1435400:intergenic 35.0%
! TGTTGGTCTAAATGTCTACT+TGG - tig0027701:39036-39055 Msa1435400:intergenic 35.0%
CATTTAGACCAACATGATGA+AGG + tig0027701:39042-39061 Msa1435400:CDS 35.0%
CTAAAATGCCTTCATCATGT+TGG - tig0027701:39053-39072 Msa1435400:intergenic 35.0%
AGATGTAGATAATTCATCCG+AGG + tig0027701:39125-39144 Msa1435400:CDS 35.0%
TTTGCATTGTCCTCTATGTA+GGG + tig0027701:39161-39180 Msa1435400:CDS 35.0%
ATAAGAAGAGAAGTTGCTCA+AGG + tig0027701:39235-39254 Msa1435400:CDS 35.0%
TAAGAAGAGAAGTTGCTCAA+GGG + tig0027701:39236-39255 Msa1435400:CDS 35.0%
CAATATCACCATATTCTCTC+TGG - tig0027701:39383-39402 Msa1435400:intergenic 35.0%
!! AAAATGGAGATGGTATTGGT+AGG + tig0027701:39460-39479 Msa1435400:CDS 35.0%
! ATCCATCATTTGGAACAAGA+TGG - tig0027701:39550-39569 Msa1435400:intergenic 35.0%
!! CAATGGTGTTATCCATCATT+TGG - tig0027701:39560-39579 Msa1435400:intergenic 35.0%
TGGTTCCCTAACAATTTCAA+TGG - tig0027701:39577-39596 Msa1435400:intergenic 35.0%
CTAAATGTCTACTTGGATCT+TGG - tig0027701:39029-39048 Msa1435400:intergenic 35.0%
! TGTTGGTCTAAATGTCTACT+TGG - tig0027701:39036-39055 Msa1435400:intergenic 35.0%
CATTTAGACCAACATGATGA+AGG + tig0027701:39042-39061 Msa1435400:CDS 35.0%
CTAAAATGCCTTCATCATGT+TGG - tig0027701:39053-39072 Msa1435400:intergenic 35.0%
AGATGTAGATAATTCATCCG+AGG + tig0027701:39125-39144 Msa1435400:CDS 35.0%
TTTGCATTGTCCTCTATGTA+GGG + tig0027701:39161-39180 Msa1435400:CDS 35.0%
ATAAGAAGAGAAGTTGCTCA+AGG + tig0027701:39235-39254 Msa1435400:CDS 35.0%
TAAGAAGAGAAGTTGCTCAA+GGG + tig0027701:39236-39255 Msa1435400:CDS 35.0%
CAATATCACCATATTCTCTC+TGG - tig0027701:39383-39402 Msa1435400:intergenic 35.0%
!! AAAATGGAGATGGTATTGGT+AGG + tig0027701:39460-39479 Msa1435400:CDS 35.0%
! ATCCATCATTTGGAACAAGA+TGG - tig0027701:39550-39569 Msa1435400:intergenic 35.0%
!! CAATGGTGTTATCCATCATT+TGG - tig0027701:39560-39579 Msa1435400:intergenic 35.0%
TGGTTCCCTAACAATTTCAA+TGG - tig0027701:39577-39596 Msa1435400:intergenic 35.0%
AGTTTCATGTCCTATCTGCA+TGG + tig0027701:38693-38712 Msa1435400:CDS 40.0%
AGTAGGAGAACAGCATTATG+TGG - tig0027701:38724-38743 Msa1435400:intergenic 40.0%
TATCATGAGAGCTGCAAAGT+AGG - tig0027701:38741-38760 Msa1435400:intergenic 40.0%
ACTTTGCAGCTCTCATGATA+AGG + tig0027701:38741-38760 Msa1435400:CDS 40.0%
CTTTGCAGCTCTCATGATAA+GGG + tig0027701:38742-38761 Msa1435400:CDS 40.0%
TTGTCTGTTGGAATTCCACA+AGG + tig0027701:38985-39004 Msa1435400:CDS 40.0%
GTTTGCATTGTCCTCTATGT+AGG + tig0027701:39160-39179 Msa1435400:CDS 40.0%
TTGCATTGTCCTCTATGTAG+GGG + tig0027701:39162-39181 Msa1435400:CDS 40.0%
! CTCATTTGCTGGAGATTATC+TGG + tig0027701:39266-39285 Msa1435400:CDS 40.0%
! GAGATTATCTGGAATTGCGT+AGG + tig0027701:39277-39296 Msa1435400:CDS 40.0%
TACGTTCTCGAAAATGGAGA+TGG + tig0027701:39450-39469 Msa1435400:CDS 40.0%
CTCGAAAATGGAGATGGTAT+TGG + tig0027701:39456-39475 Msa1435400:CDS 40.0%
! ATGGCAATGGTAATGTACCT+TGG + tig0027701:39511-39530 Msa1435400:CDS 40.0%
! CATCATTTGGAACAAGATGG+TGG - tig0027701:39547-39566 Msa1435400:intergenic 40.0%
CACCATCTTGTTCCAAATGA+TGG + tig0027701:39545-39564 Msa1435400:CDS 40.0%
GTTCTTCAAATGGATGGTCA+AGG + tig0027701:39604-39623 Msa1435400:CDS 40.0%
!! TCTTTGGGGTGAGAATTTGT+TGG + tig0027701:39656-39675 Msa1435400:CDS 40.0%
!! CTTTGGGGTGAGAATTTGTT+GGG + tig0027701:39657-39676 Msa1435400:CDS 40.0%
AGTTTCATGTCCTATCTGCA+TGG + tig0027701:38693-38712 Msa1435400:CDS 40.0%
AGTAGGAGAACAGCATTATG+TGG - tig0027701:38724-38743 Msa1435400:intergenic 40.0%
TATCATGAGAGCTGCAAAGT+AGG - tig0027701:38741-38760 Msa1435400:intergenic 40.0%
ACTTTGCAGCTCTCATGATA+AGG + tig0027701:38741-38760 Msa1435400:CDS 40.0%
CTTTGCAGCTCTCATGATAA+GGG + tig0027701:38742-38761 Msa1435400:CDS 40.0%
TTGTCTGTTGGAATTCCACA+AGG + tig0027701:38985-39004 Msa1435400:CDS 40.0%
GTTTGCATTGTCCTCTATGT+AGG + tig0027701:39160-39179 Msa1435400:CDS 40.0%
TTGCATTGTCCTCTATGTAG+GGG + tig0027701:39162-39181 Msa1435400:CDS 40.0%
! CTCATTTGCTGGAGATTATC+TGG + tig0027701:39266-39285 Msa1435400:CDS 40.0%
! GAGATTATCTGGAATTGCGT+AGG + tig0027701:39277-39296 Msa1435400:CDS 40.0%
TACGTTCTCGAAAATGGAGA+TGG + tig0027701:39450-39469 Msa1435400:CDS 40.0%
CTCGAAAATGGAGATGGTAT+TGG + tig0027701:39456-39475 Msa1435400:CDS 40.0%
! ATGGCAATGGTAATGTACCT+TGG + tig0027701:39511-39530 Msa1435400:CDS 40.0%
! CATCATTTGGAACAAGATGG+TGG - tig0027701:39547-39566 Msa1435400:intergenic 40.0%
CACCATCTTGTTCCAAATGA+TGG + tig0027701:39545-39564 Msa1435400:CDS 40.0%
GTTCTTCAAATGGATGGTCA+AGG + tig0027701:39604-39623 Msa1435400:CDS 40.0%
!! TCTTTGGGGTGAGAATTTGT+TGG + tig0027701:39656-39675 Msa1435400:CDS 40.0%
!! CTTTGGGGTGAGAATTTGTT+GGG + tig0027701:39657-39676 Msa1435400:CDS 40.0%
GCATGCTCTTCACAGAGAAT+TGG + tig0027701:38666-38685 Msa1435400:CDS 45.0%
GGAGAACAGCATTATGTGGA+TGG - tig0027701:38720-38739 Msa1435400:intergenic 45.0%
AATTCCACAAGGATCGAGAC+AGG + tig0027701:38996-39015 Msa1435400:CDS 45.0%
ATTCCACAAGGATCGAGACA+GGG + tig0027701:38997-39016 Msa1435400:CDS 45.0%
!! TGCTGATTCTGAGAACTTGC+AGG + tig0027701:39077-39096 Msa1435400:CDS 45.0%
! ATTCTGAGAACTTGCAGGAC+AGG + tig0027701:39082-39101 Msa1435400:CDS 45.0%
! TTCTGAGAACTTGCAGGACA+GGG + tig0027701:39083-39102 Msa1435400:CDS 45.0%
CAAACTCGACTTTGAGTCCT+CGG - tig0027701:39145-39164 Msa1435400:intergenic 45.0%
AATACTGTGCCCCTACATAG+AGG - tig0027701:39174-39193 Msa1435400:intergenic 45.0%
! CTATGTAGGGGCACAGTATT+AGG + tig0027701:39174-39193 Msa1435400:CDS 45.0%
AGGGATTCATGCTCATTTGC+TGG + tig0027701:39255-39274 Msa1435400:CDS 45.0%
CTTGTCGGATCAACATCAGA+GGG - tig0027701:39333-39352 Msa1435400:intergenic 45.0%
TCTTGTCGGATCAACATCAG+AGG - tig0027701:39334-39353 Msa1435400:intergenic 45.0%
TTTGAGCGCCAGAGAGAATA+TGG + tig0027701:39372-39391 Msa1435400:CDS 45.0%
GGGGATTACGTTCTCGAAAA+TGG + tig0027701:39444-39463 Msa1435400:CDS 45.0%
!! GATGGTATTGGTAGGTTACC+AGG + tig0027701:39468-39487 Msa1435400:CDS 45.0%
!! ATGGTGGTAGTGGTTAACCA+AGG - tig0027701:39531-39550 Msa1435400:intergenic 45.0%
! TTGGAACAAGATGGTGGTAG+TGG - tig0027701:39541-39560 Msa1435400:intergenic 45.0%
CCATTTGAAGAACGAGCTCT+TGG - tig0027701:39597-39616 Msa1435400:intergenic 45.0%
CCAAGAGCTCGTTCTTCAAA+TGG + tig0027701:39594-39613 Msa1435400:CDS 45.0%
GAGCTCGTTCTTCAAATGGA+TGG + tig0027701:39598-39617 Msa1435400:CDS 45.0%
AAGATGCATCTCATGTCCCA+AGG + tig0027701:39733-39752 Msa1435400:CDS 45.0%
ACCTCGTCCTATTCAAACGA+CGG - tig0027701:39764-39783 Msa1435400:intergenic 45.0%
GCATGCTCTTCACAGAGAAT+TGG + tig0027701:38666-38685 Msa1435400:CDS 45.0%
GGAGAACAGCATTATGTGGA+TGG - tig0027701:38720-38739 Msa1435400:intergenic 45.0%
AATTCCACAAGGATCGAGAC+AGG + tig0027701:38996-39015 Msa1435400:CDS 45.0%
ATTCCACAAGGATCGAGACA+GGG + tig0027701:38997-39016 Msa1435400:CDS 45.0%
!! TGCTGATTCTGAGAACTTGC+AGG + tig0027701:39077-39096 Msa1435400:CDS 45.0%
! ATTCTGAGAACTTGCAGGAC+AGG + tig0027701:39082-39101 Msa1435400:CDS 45.0%
! TTCTGAGAACTTGCAGGACA+GGG + tig0027701:39083-39102 Msa1435400:CDS 45.0%
CAAACTCGACTTTGAGTCCT+CGG - tig0027701:39145-39164 Msa1435400:intergenic 45.0%
AATACTGTGCCCCTACATAG+AGG - tig0027701:39174-39193 Msa1435400:intergenic 45.0%
! CTATGTAGGGGCACAGTATT+AGG + tig0027701:39174-39193 Msa1435400:CDS 45.0%
AGGGATTCATGCTCATTTGC+TGG + tig0027701:39255-39274 Msa1435400:CDS 45.0%
CTTGTCGGATCAACATCAGA+GGG - tig0027701:39333-39352 Msa1435400:intergenic 45.0%
TCTTGTCGGATCAACATCAG+AGG - tig0027701:39334-39353 Msa1435400:intergenic 45.0%
TTTGAGCGCCAGAGAGAATA+TGG + tig0027701:39372-39391 Msa1435400:CDS 45.0%
GGGGATTACGTTCTCGAAAA+TGG + tig0027701:39444-39463 Msa1435400:CDS 45.0%
!! GATGGTATTGGTAGGTTACC+AGG + tig0027701:39468-39487 Msa1435400:CDS 45.0%
!! ATGGTGGTAGTGGTTAACCA+AGG - tig0027701:39531-39550 Msa1435400:intergenic 45.0%
! TTGGAACAAGATGGTGGTAG+TGG - tig0027701:39541-39560 Msa1435400:intergenic 45.0%
CCATTTGAAGAACGAGCTCT+TGG - tig0027701:39597-39616 Msa1435400:intergenic 45.0%
CCAAGAGCTCGTTCTTCAAA+TGG + tig0027701:39594-39613 Msa1435400:CDS 45.0%
GAGCTCGTTCTTCAAATGGA+TGG + tig0027701:39598-39617 Msa1435400:CDS 45.0%
AAGATGCATCTCATGTCCCA+AGG + tig0027701:39733-39752 Msa1435400:CDS 45.0%
ACCTCGTCCTATTCAAACGA+CGG - tig0027701:39764-39783 Msa1435400:intergenic 45.0%
TGTGGATGGTCCATGCAGAT+AGG - tig0027701:38706-38725 Msa1435400:intergenic 50.0%
! TAGGGGCACAGTATTAGGCT+GGG + tig0027701:39179-39198 Msa1435400:CDS 50.0%
TGGAATTGCGTAGGCATGCT+AGG + tig0027701:39286-39305 Msa1435400:CDS 50.0%
ACATCAGAGGGACGAGAAGT+AGG - tig0027701:39321-39340 Msa1435400:intergenic 50.0%
ATCCGACAAGAGAACAAGCG+TGG + tig0027701:39343-39362 Msa1435400:CDS 50.0%
TGCCACGCTTGTTCTCTTGT+CGG - tig0027701:39348-39367 Msa1435400:intergenic 50.0%
GCTATTCAGTCTGCCATACC+AGG + tig0027701:39408-39427 Msa1435400:CDS 50.0%
AACTACCACAGCTCCTGGTA+TGG - tig0027701:39424-39443 Msa1435400:intergenic 50.0%
ATACCAGGAGCTGTGGTAGT+TGG + tig0027701:39423-39442 Msa1435400:CDS 50.0%
TACCAGGAGCTGTGGTAGTT+GGG + tig0027701:39424-39443 Msa1435400:CDS 50.0%
!! GGTATTGGTAGGTTACCAGG+TGG + tig0027701:39471-39490 Msa1435400:CDS 50.0%
ATTGGTAGGTTACCAGGTGG+TGG + tig0027701:39474-39493 Msa1435400:CDS 50.0%
! TAGGTTACCAGGTGGTGGTA+GGG + tig0027701:39479-39498 Msa1435400:CDS 50.0%
TGACCGTCGTCGCTATCTTT+GGG + tig0027701:39641-39660 Msa1435400:CDS 50.0%
ATGCATCTCATGTCCCAAGG+AGG + tig0027701:39736-39755 Msa1435400:CDS 50.0%
TGTGGATGGTCCATGCAGAT+AGG - tig0027701:38706-38725 Msa1435400:intergenic 50.0%
! TAGGGGCACAGTATTAGGCT+GGG + tig0027701:39179-39198 Msa1435400:CDS 50.0%
TGGAATTGCGTAGGCATGCT+AGG + tig0027701:39286-39305 Msa1435400:CDS 50.0%
ACATCAGAGGGACGAGAAGT+AGG - tig0027701:39321-39340 Msa1435400:intergenic 50.0%
ATCCGACAAGAGAACAAGCG+TGG + tig0027701:39343-39362 Msa1435400:CDS 50.0%
TGCCACGCTTGTTCTCTTGT+CGG - tig0027701:39348-39367 Msa1435400:intergenic 50.0%
GCTATTCAGTCTGCCATACC+AGG + tig0027701:39408-39427 Msa1435400:CDS 50.0%
AACTACCACAGCTCCTGGTA+TGG - tig0027701:39424-39443 Msa1435400:intergenic 50.0%
ATACCAGGAGCTGTGGTAGT+TGG + tig0027701:39423-39442 Msa1435400:CDS 50.0%
TACCAGGAGCTGTGGTAGTT+GGG + tig0027701:39424-39443 Msa1435400:CDS 50.0%
!! GGTATTGGTAGGTTACCAGG+TGG + tig0027701:39471-39490 Msa1435400:CDS 50.0%
ATTGGTAGGTTACCAGGTGG+TGG + tig0027701:39474-39493 Msa1435400:CDS 50.0%
! TAGGTTACCAGGTGGTGGTA+GGG + tig0027701:39479-39498 Msa1435400:CDS 50.0%
TGACCGTCGTCGCTATCTTT+GGG + tig0027701:39641-39660 Msa1435400:CDS 50.0%
ATGCATCTCATGTCCCAAGG+AGG + tig0027701:39736-39755 Msa1435400:CDS 50.0%
TCACCCTGTCTCGATCCTTG+TGG - tig0027701:39003-39022 Msa1435400:intergenic 55.0%
! GTAGGGGCACAGTATTAGGC+TGG + tig0027701:39178-39197 Msa1435400:CDS 55.0%
AGGCTGGGAGGTTGTTGAAG+AGG + tig0027701:39194-39213 Msa1435400:CDS 55.0%
ACCAGGAGCTGTGGTAGTTG+GGG + tig0027701:39425-39444 Msa1435400:CDS 55.0%
! GTAGGTTACCAGGTGGTGGT+AGG + tig0027701:39478-39497 Msa1435400:CDS 55.0%
! TTACCAGGTGGTGGTAGGGA+GGG + tig0027701:39483-39502 Msa1435400:CDS 55.0%
CTGACCGTCGTCGCTATCTT+TGG + tig0027701:39640-39659 Msa1435400:CDS 55.0%
GACCGTCGTCGCTATCTTTG+GGG + tig0027701:39642-39661 Msa1435400:CDS 55.0%
CACCCCAAAGATAGCGACGA+CGG - tig0027701:39647-39666 Msa1435400:intergenic 55.0%
GCCGTCGTTTGAATAGGACG+AGG + tig0027701:39760-39779 Msa1435400:CDS 55.0%
TCACCCTGTCTCGATCCTTG+TGG - tig0027701:39003-39022 Msa1435400:intergenic 55.0%
! GTAGGGGCACAGTATTAGGC+TGG + tig0027701:39178-39197 Msa1435400:CDS 55.0%
AGGCTGGGAGGTTGTTGAAG+AGG + tig0027701:39194-39213 Msa1435400:CDS 55.0%
ACCAGGAGCTGTGGTAGTTG+GGG + tig0027701:39425-39444 Msa1435400:CDS 55.0%
! GTAGGTTACCAGGTGGTGGT+AGG + tig0027701:39478-39497 Msa1435400:CDS 55.0%
! TTACCAGGTGGTGGTAGGGA+GGG + tig0027701:39483-39502 Msa1435400:CDS 55.0%
CTGACCGTCGTCGCTATCTT+TGG + tig0027701:39640-39659 Msa1435400:CDS 55.0%
GACCGTCGTCGCTATCTTTG+GGG + tig0027701:39642-39661 Msa1435400:CDS 55.0%
CACCCCAAAGATAGCGACGA+CGG - tig0027701:39647-39666 Msa1435400:intergenic 55.0%
GCCGTCGTTTGAATAGGACG+AGG + tig0027701:39760-39779 Msa1435400:CDS 55.0%
GCAGGACAGGGCTGTTCTTG+AGG + tig0027701:39095-39114 Msa1435400:CDS 60.0%
GGACAGGGCTGTTCTTGAGG+AGG + tig0027701:39098-39117 Msa1435400:CDS 60.0%
GGGCACAGTATTAGGCTGGG+AGG + tig0027701:39182-39201 Msa1435400:CDS 60.0%
GTCTGCCATACCAGGAGCTG+TGG + tig0027701:39416-39435 Msa1435400:CDS 60.0%
TCCCCAACTACCACAGCTCC+TGG - tig0027701:39429-39448 Msa1435400:intergenic 60.0%
! GTTACCAGGTGGTGGTAGGG+AGG + tig0027701:39482-39501 Msa1435400:CDS 60.0%
! TACCAGGTGGTGGTAGGGAG+GGG + tig0027701:39484-39503 Msa1435400:CDS 60.0%
AGGGAGGGGAGCAATGGCAA+TGG + tig0027701:39498-39517 Msa1435400:CDS 60.0%
TCAAACGACGGCGCCTCCTT+GGG - tig0027701:39752-39771 Msa1435400:intergenic 60.0%
TTCAAACGACGGCGCCTCCT+TGG - tig0027701:39753-39772 Msa1435400:intergenic 60.0%
!! GGAGGCGCCGTCGTTTGAAT+AGG + tig0027701:39754-39773 Msa1435400:CDS 60.0%
GCAGGACAGGGCTGTTCTTG+AGG + tig0027701:39095-39114 Msa1435400:CDS 60.0%
GGACAGGGCTGTTCTTGAGG+AGG + tig0027701:39098-39117 Msa1435400:CDS 60.0%
GGGCACAGTATTAGGCTGGG+AGG + tig0027701:39182-39201 Msa1435400:CDS 60.0%
GTCTGCCATACCAGGAGCTG+TGG + tig0027701:39416-39435 Msa1435400:CDS 60.0%
TCCCCAACTACCACAGCTCC+TGG - tig0027701:39429-39448 Msa1435400:intergenic 60.0%
! GTTACCAGGTGGTGGTAGGG+AGG + tig0027701:39482-39501 Msa1435400:CDS 60.0%
! TACCAGGTGGTGGTAGGGAG+GGG + tig0027701:39484-39503 Msa1435400:CDS 60.0%
AGGGAGGGGAGCAATGGCAA+TGG + tig0027701:39498-39517 Msa1435400:CDS 60.0%
TCAAACGACGGCGCCTCCTT+GGG - tig0027701:39752-39771 Msa1435400:intergenic 60.0%
TTCAAACGACGGCGCCTCCT+TGG - tig0027701:39753-39772 Msa1435400:intergenic 60.0%
!! GGAGGCGCCGTCGTTTGAAT+AGG + tig0027701:39754-39773 Msa1435400:CDS 60.0%
GGTGGTAGGGAGGGGAGCAA+TGG + tig0027701:39492-39511 Msa1435400:CDS 65.0%
GGTGGTAGGGAGGGGAGCAA+TGG + tig0027701:39492-39511 Msa1435400:CDS 65.0%
CTCCCCTCCCTACCACCACC+TGG - tig0027701:39489-39508 Msa1435400:intergenic 70.0%
CTCCCCTCCCTACCACCACC+TGG - tig0027701:39489-39508 Msa1435400:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0027701 gene 38625 39803 38625 ID=Msa1435400;Name=Msa1435400
tig0027701 mRNA 38625 39803 38625 ID=Msa1435400-mRNA-1;Parent=Msa1435400;Name=Msa1435400-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|392
tig0027701 exon 38625 39803 38625 ID=Msa1435400-mRNA-1:exon:9659;Parent=Msa1435400-mRNA-1
tig0027701 CDS 38625 39803 38625 ID=Msa1435400-mRNA-1:cds;Parent=Msa1435400-mRNA-1
Gene Sequence

>Msa1435400

ATGGCTGGTTTTAAGCGAAGATTATGTAATGATTCAGATATGCATGCTCTTCACAGAGAATTGGATGAAGTTTCATGTCCTATCTGCATGGACCATCCACATAATGCTGTTCTCCTACTTTGCAGCTCTCATGATAAGGGCTGCAGATCTTACATTTGTGATACAAGTTATAGGCATTCAAATTGTCTGGACCGATTTAAAAAATTGAGAGACAACTCTACGGAGAACCCAAATTTACAAAGTTCTTTAATAAACACTAACAACTCTTCCGGTAATAGTTTTGATATTAACTTTACTATGCAATCTGACATGCATAATGTTGATGAATTATTACTCTACCAAAATGAAATTAATACTCTATTGTCTGTTGGAATTCCACAAGGATCGAGACAGGGTGATGCCCAAGATCCAAGTAGACATTTAGACCAACATGATGAAGGCATTTTAGAAACTGCTGATTCTGAGAACTTGCAGGACAGGGCTGTTCTTGAGGAGGAATTAGATGTAGATAATTCATCCGAGGACTCAAAGTCGAGTTTGCATTGTCCTCTATGTAGGGGCACAGTATTAGGCTGGGAGGTTGTTGAAGAGGCTAGAAATTATCTGAATAATAAGAAGAGAAGTTGCTCAAGGGATTCATGCTCATTTGCTGGAGATTATCTGGAATTGCGTAGGCATGCTAGGAGAGTTCATCCTACTTCTCGTCCCTCTGATGTTGATCCGACAAGAGAACAAGCGTGGCAACAATTTGAGCGCCAGAGAGAATATGGTGATATTGTGAGTGCTATTCAGTCTGCCATACCAGGAGCTGTGGTAGTTGGGGATTACGTTCTCGAAAATGGAGATGGTATTGGTAGGTTACCAGGTGGTGGTAGGGAGGGGAGCAATGGCAATGGTAATGTACCTTGGTTAACCACTACCACCATCTTGTTCCAAATGATGGATAACACCATTGAAATTGTTAGGGAACCAAGAGCTCGTTCTTCAAATGGATGGTCAAGGCATCGTCGTTCATCTGACCGTCGTCGCTATCTTTGGGGTGAGAATTTGTTGGGTCTTCAAGATAATGAAGTCGAAGAAGATCTACGAATATTTAATGAACTGGTTGAAGATGCATCTCATGTCCCAAGGAGGCGCCGTCGTTTGAATAGGACGAGGTCCAACGAAGATCATTCATGA

Protein sequence

>Msa1435400

MAGFKRRLCNDSDMHALHRELDEVSCPICMDHPHNAVLLLCSSHDKGCRSYICDTSYRHSNCLDRFKKLRDNSTENPNLQSSLINTNNSSGNSFDINFTMQSDMHNVDELLLYQNEINTLLSVGIPQGSRQGDAQDPSRHLDQHDEGILETADSENLQDRAVLEEELDVDNSSEDSKSSLHCPLCRGTVLGWEVVEEARNYLNNKKRSCSRDSCSFAGDYLELRRHARRVHPTSRPSDVDPTREQAWQQFERQREYGDIVSAIQSAIPGAVVVGDYVLENGDGIGRLPGGGREGSNGNGNVPWLTTTTILFQMMDNTIEIVREPRARSSNGWSRHRRSSDRRRYLWGENLLGLQDNEVEEDLRIFNELVEDASHVPRRRRRLNRTRSNEDHS*