AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1021510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1021510 MtrunA17_Chr7g0237691 90.076 393 1 2 1 392 1 356 0.0 659
Msa1021510 MtrunA17_Chr4g0063281 38.545 275 122 7 19 291 43 272 7.45e-58 192
Msa1021510 MtrunA17_Chr3g0115161 61.165 103 40 0 180 282 128 230 4.25e-38 139
Msa1021510 MtrunA17_Chr3g0115161 46.591 88 41 2 24 111 48 129 2.62e-16 79.0
Msa1021510 MtrunA17_Chr4g0051231 46.939 147 67 2 141 279 90 233 2.04e-36 136
Msa1021510 MtrunA17_Chr4g0051231 70.000 50 15 0 19 68 46 95 5.34e-19 87.8
Msa1021510 MtrunA17_Chr1g0148061 46.479 142 71 2 174 315 94 230 1.38e-33 127
Msa1021510 MtrunA17_Chr1g0148061 62.069 58 22 0 10 67 12 69 2.25e-16 79.3
Msa1021510 MtrunA17_Chr8g0378741 50.000 90 45 0 177 266 131 220 3.68e-25 106
Msa1021510 MtrunA17_Chr8g0378741 52.113 71 34 0 19 89 41 111 1.16e-17 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1021510 AT3G24740.3 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1021510 AT3G24740.1 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1021510 AT3G24740.5 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1021510 AT3G24740.6 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1021510 AT3G24740.2 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1021510 AT3G24740.4 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1021510 AT3G25910.1 36.965 257 139 4 19 275 36 269 2.00e-50 174
Msa1021510 AT4G31410.1 48.889 135 64 1 182 316 102 231 1.86e-35 132
Msa1021510 AT4G31410.1 55.357 56 23 1 22 77 30 83 1.95e-14 73.9
Msa1021510 AT4G31410.2 48.889 135 64 1 182 316 102 231 1.86e-35 132
Msa1021510 AT4G31410.2 55.357 56 23 1 22 77 30 83 1.95e-14 73.9
Msa1021510 AT4G31410.3 48.889 135 64 1 182 316 102 231 1.86e-35 132
Msa1021510 AT4G31410.3 55.357 56 23 1 22 77 30 83 1.95e-14 73.9
Msa1021510 AT4G08460.4 48.624 109 56 0 175 283 100 208 6.93e-33 124
Msa1021510 AT4G08460.4 51.786 56 25 1 24 77 47 102 5.22e-14 72.0
Msa1021510 AT4G08460.1 48.624 109 56 0 175 283 100 208 6.93e-33 124
Msa1021510 AT4G08460.1 51.786 56 25 1 24 77 47 102 5.22e-14 72.0
Msa1021510 AT4G08460.2 48.624 109 56 0 175 283 100 208 6.93e-33 124
Msa1021510 AT4G08460.2 51.786 56 25 1 24 77 47 102 5.22e-14 72.0
Msa1021510 AT4G08460.3 48.624 109 56 0 175 283 100 208 6.93e-33 124
Msa1021510 AT4G08460.3 51.786 56 25 1 24 77 47 102 5.22e-14 72.0
Msa1021510 AT1G68140.2 47.115 104 55 0 180 283 118 221 7.97e-30 117
Msa1021510 AT1G68140.2 68.000 50 16 0 19 68 48 97 1.31e-17 83.2
Msa1021510 AT1G68140.1 47.115 104 55 0 180 283 118 221 1.20e-29 117
Msa1021510 AT1G68140.1 68.000 50 16 0 19 68 48 97 1.48e-17 83.6
Msa1021510 AT1G68140.4 47.115 104 55 0 180 283 118 221 1.20e-29 117
Msa1021510 AT1G68140.4 68.000 50 16 0 19 68 48 97 1.48e-17 83.6
Msa1021510 AT1G68140.3 47.115 104 55 0 180 283 118 221 1.20e-29 117
Msa1021510 AT1G68140.3 68.000 50 16 0 19 68 48 97 1.48e-17 83.6
Msa1021510 AT1G77770.3 49.000 100 51 0 180 279 85 184 6.30e-27 108
Msa1021510 AT1G77770.3 55.556 54 24 0 19 72 24 77 3.10e-14 72.8
Msa1021510 AT1G77770.2 49.000 100 51 0 180 279 85 184 6.30e-27 108
Msa1021510 AT1G77770.2 55.556 54 24 0 19 72 24 77 3.10e-14 72.8
Msa1021510 AT1G77770.1 49.000 100 51 0 180 279 85 184 6.70e-27 108
Msa1021510 AT1G77770.1 50.000 66 32 1 19 83 24 89 2.80e-14 72.8
Msa1021510 AT2G26050.1 42.353 85 48 1 179 262 71 155 1.11e-16 79.0
Msa1021510 AT1G15430.1 39.535 86 52 0 179 264 106 191 1.50e-16 79.3
Msa1021510 AT1G15430.1 63.830 47 17 0 20 66 47 93 6.37e-14 71.6
Msa1021510 AT1G15430.2 39.535 86 52 0 179 264 106 191 1.50e-16 79.3
Msa1021510 AT1G15430.2 63.830 47 17 0 20 66 47 93 6.37e-14 71.6
Msa1021510 AT1G80220.1 39.806 103 59 2 179 280 100 200 2.49e-16 78.6
Msa1021510 AT1G80220.1 53.571 56 22 1 22 73 43 98 9.71e-12 65.1

Find 106 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAAGAACTTTGTAAATT+TGG 0.086986 7_1:+45916398 None:intergenic
CTGACCGTCGTCGCTATCTT+TGG 0.205802 7_1:-45915611 Msa1021510:CDS
CTCATTTGCTGGAGATTATC+TGG 0.236537 7_1:-45915985 Msa1021510:CDS
GGGGATTACGTTCTCGAAAA+TGG 0.268380 7_1:-45915807 Msa1021510:CDS
ACATTTGTGATACAAGTTAT+AGG 0.274353 7_1:-45916475 Msa1021510:CDS
CTATGTAGGGGCACAGTATT+AGG 0.283301 7_1:-45916077 Msa1021510:CDS
TTAAAGAACTTTGTAAATTT+GGG 0.285619 7_1:+45916399 None:intergenic
ATAGAGTATTAATTTCATTT+TGG 0.288715 7_1:+45916288 None:intergenic
CAATGGTGTTATCCATCATT+TGG 0.297444 7_1:+45915694 None:intergenic
TGACCGTCGTCGCTATCTTT+GGG 0.306879 7_1:-45915610 Msa1021510:CDS
ATAACACCATTGAAATTGTT+AGG 0.318676 7_1:-45915683 Msa1021510:CDS
TGCCACGCTTGTTCTCTTGT+CGG 0.342123 7_1:+45915906 None:intergenic
AGGGATTCATGCTCATTTGC+TGG 0.342371 7_1:-45915996 Msa1021510:CDS
TTTGAGCGCCAGAGAGAATA+TGG 0.354225 7_1:-45915879 Msa1021510:CDS
TACCAGGAGCTGTGGTAGTT+GGG 0.361459 7_1:-45915827 Msa1021510:CDS
CTAAATGTCTACTTGGATCT+TGG 0.362438 7_1:+45916225 None:intergenic
GTTTGCATTGTCCTCTATGT+AGG 0.375371 7_1:-45916091 Msa1021510:CDS
TACCAGGTGGTGGTAGGGAG+GGG 0.376072 7_1:-45915767 Msa1021510:CDS
CTTTGGGGTGAGAATTTGTT+GGG 0.387062 7_1:-45915594 Msa1021510:CDS
TCTACGAATATTTAATGAAC+TGG 0.389467 7_1:-45915544 Msa1021510:CDS
GTTAATATCAAAACTATTAC+CGG 0.394163 7_1:+45916358 None:intergenic
GCATGCTCTTCACAGAGAAT+TGG 0.394274 7_1:-45916585 Msa1021510:CDS
TTCAAACGACGGCGCCTCCT+TGG 0.409832 7_1:+45915501 None:intergenic
TTATAGGCATTCAAATTGTC+TGG 0.411863 7_1:-45916459 Msa1021510:CDS
TGCTGATTCTGAGAACTTGC+AGG 0.412339 7_1:-45916174 Msa1021510:CDS
ATAAACACTAACAACTCTTC+CGG 0.422488 7_1:-45916377 Msa1021510:CDS
ACTTTGCAGCTCTCATGATA+AGG 0.425611 7_1:-45916510 Msa1021510:CDS
ATTAATACTCTATTGTCTGT+TGG 0.425972 7_1:-45916278 Msa1021510:CDS
CCATTTGAAGAACGAGCTCT+TGG 0.431014 7_1:+45915657 None:intergenic
TCTTTGGGGTGAGAATTTGT+TGG 0.432599 7_1:-45915595 Msa1021510:CDS
CCAAGAGCTCGTTCTTCAAA+TGG 0.433577 7_1:-45915657 Msa1021510:CDS
ATTCTGAGAACTTGCAGGAC+AGG 0.434425 7_1:-45916169 Msa1021510:CDS
TAAATGTCTACTTGGATCTT+GGG 0.439889 7_1:+45916226 None:intergenic
TTTGCATTGTCCTCTATGTA+GGG 0.447980 7_1:-45916090 Msa1021510:CDS
CACCATCTTGTTCCAAATGA+TGG 0.449976 7_1:-45915706 Msa1021510:CDS
TCAAACGACGGCGCCTCCTT+GGG 0.458119 7_1:+45915502 None:intergenic
TGGTTCCCTAACAATTTCAA+TGG 0.459007 7_1:+45915677 None:intergenic
CTTTGCAGCTCTCATGATAA+GGG 0.464712 7_1:-45916509 Msa1021510:CDS
GGAGGCGCCGTCGTTTGAAT+AGG 0.466130 7_1:-45915497 Msa1021510:CDS
GTTACCAGGTGGTGGTAGGG+AGG 0.472492 7_1:-45915769 Msa1021510:CDS
TAACACCATTGAAATTGTTA+GGG 0.485966 7_1:-45915682 Msa1021510:CDS
CAATATCACCATATTCTCTC+TGG 0.489351 7_1:+45915871 None:intergenic
CTCGAAAATGGAGATGGTAT+TGG 0.491652 7_1:-45915795 Msa1021510:CDS
TTGGAACAAGATGGTGGTAG+TGG 0.494227 7_1:+45915713 None:intergenic
GATGGTATTGGTAGGTTACC+AGG 0.501983 7_1:-45915783 Msa1021510:CDS
GCAGGACAGGGCTGTTCTTG+AGG 0.502162 7_1:-45916156 Msa1021510:CDS
TGTGGATGGTCCATGCAGAT+AGG 0.502449 7_1:+45916548 None:intergenic
AATTCCACAAGGATCGAGAC+AGG 0.502538 7_1:-45916255 Msa1021510:CDS
GTAGGTTACCAGGTGGTGGT+AGG 0.505182 7_1:-45915773 Msa1021510:CDS
ATACCAGGAGCTGTGGTAGT+TGG 0.506423 7_1:-45915828 Msa1021510:CDS
TGGAATTGCGTAGGCATGCT+AGG 0.511583 7_1:-45915965 Msa1021510:CDS
TAGGTTACCAGGTGGTGGTA+GGG 0.512795 7_1:-45915772 Msa1021510:CDS
GACCGTCGTCGCTATCTTTG+GGG 0.514814 7_1:-45915609 Msa1021510:CDS
GCTATTCAGTCTGCCATACC+AGG 0.516031 7_1:-45915843 Msa1021510:CDS
TGTTGGTCTAAATGTCTACT+TGG 0.518204 7_1:+45916218 None:intergenic
CAAACTCGACTTTGAGTCCT+CGG 0.522532 7_1:+45916109 None:intergenic
GGTGGTAGGGAGGGGAGCAA+TGG 0.523498 7_1:-45915759 Msa1021510:CDS
CTAAAATGCCTTCATCATGT+TGG 0.523887 7_1:+45916201 None:intergenic
ACATCAGAGGGACGAGAAGT+AGG 0.527291 7_1:+45915933 None:intergenic
TATCATGAGAGCTGCAAAGT+AGG 0.528215 7_1:+45916513 None:intergenic
CAATCATGAATGATCTTCGT+TGG 0.532620 7_1:+45915467 None:intergenic
TTCTGAGAACTTGCAGGACA+GGG 0.533978 7_1:-45916168 Msa1021510:CDS
ATTGGTAGGTTACCAGGTGG+TGG 0.534392 7_1:-45915777 Msa1021510:CDS
TTACCAGGTGGTGGTAGGGA+GGG 0.536579 7_1:-45915768 Msa1021510:CDS
CTCCCCTCCCTACCACCACC+TGG 0.537599 7_1:+45915765 None:intergenic
ATCCATCATTTGGAACAAGA+TGG 0.540246 7_1:+45915704 None:intergenic
AACTACCACAGCTCCTGGTA+TGG 0.541534 7_1:+45915830 None:intergenic
TCCCCAACTACCACAGCTCC+TGG 0.541696 7_1:+45915825 None:intergenic
ACCAGGAGCTGTGGTAGTTG+GGG 0.553461 7_1:-45915826 Msa1021510:CDS
CACGGTGCGAGGAAGATGGC+TGG 0.561637 7_1:-45916641 None:intergenic
AGGCTGGGAGGTTGTTGAAG+AGG 0.565561 7_1:-45916057 Msa1021510:CDS
CATTTAGACCAACATGATGA+AGG 0.566826 7_1:-45916209 Msa1021510:CDS
GAGCTCGTTCTTCAAATGGA+TGG 0.567465 7_1:-45915653 Msa1021510:CDS
AGTAGGAGAACAGCATTATG+TGG 0.571923 7_1:+45916530 None:intergenic
AGGGAGGGGAGCAATGGCAA+TGG 0.578428 7_1:-45915753 Msa1021510:CDS
TCACCCTGTCTCGATCCTTG+TGG 0.586932 7_1:+45916251 None:intergenic
GTCTGCCATACCAGGAGCTG+TGG 0.587043 7_1:-45915835 Msa1021510:CDS
TTGCATTGTCCTCTATGTAG+GGG 0.587725 7_1:-45916089 Msa1021510:CDS
ATAAGAAGAGAAGTTGCTCA+AGG 0.588030 7_1:-45916016 Msa1021510:CDS
GGAGAACAGCATTATGTGGA+TGG 0.588463 7_1:+45916534 None:intergenic
TACGTTCTCGAAAATGGAGA+TGG 0.597289 7_1:-45915801 Msa1021510:CDS
AATACTGTGCCCCTACATAG+AGG 0.600766 7_1:+45916080 None:intergenic
GAGATTATCTGGAATTGCGT+AGG 0.608619 7_1:-45915974 Msa1021510:CDS
ATGGCAATGGTAATGTACCT+TGG 0.614535 7_1:-45915740 Msa1021510:CDS
AGTTTCATGTCCTATCTGCA+TGG 0.615030 7_1:-45916558 Msa1021510:CDS
TAAGAAGAGAAGTTGCTCAA+GGG 0.617758 7_1:-45916015 Msa1021510:CDS
GTTCTTCAAATGGATGGTCA+AGG 0.631888 7_1:-45915647 Msa1021510:CDS
TAGGGGCACAGTATTAGGCT+GGG 0.632550 7_1:-45916072 Msa1021510:CDS
AAAATGGAGATGGTATTGGT+AGG 0.633136 7_1:-45915791 Msa1021510:CDS
GGACAGGGCTGTTCTTGAGG+AGG 0.634510 7_1:-45916153 Msa1021510:CDS
AAAATTGAGAGACAACTCTA+CGG 0.637192 7_1:-45916426 Msa1021510:CDS
AAGATGCATCTCATGTCCCA+AGG 0.639920 7_1:-45915518 Msa1021510:CDS
TCTTGTCGGATCAACATCAG+AGG 0.652568 7_1:+45915920 None:intergenic
CATCATTTGGAACAAGATGG+TGG 0.659005 7_1:+45915707 None:intergenic
ACCTCGTCCTATTCAAACGA+CGG 0.662069 7_1:+45915490 None:intergenic
TTGTCTGTTGGAATTCCACA+AGG 0.662938 7_1:-45916266 Msa1021510:CDS
ATTCCACAAGGATCGAGACA+GGG 0.664648 7_1:-45916254 Msa1021510:CDS
CTTGTCGGATCAACATCAGA+GGG 0.668547 7_1:+45915921 None:intergenic
CACCCCAAAGATAGCGACGA+CGG 0.669001 7_1:+45915607 None:intergenic
ATCCGACAAGAGAACAAGCG+TGG 0.676885 7_1:-45915908 Msa1021510:CDS
AGATGTAGATAATTCATCCG+AGG 0.680649 7_1:-45916126 Msa1021510:CDS
GCCGTCGTTTGAATAGGACG+AGG 0.693738 7_1:-45915491 Msa1021510:CDS
ATGCATCTCATGTCCCAAGG+AGG 0.718218 7_1:-45915515 Msa1021510:CDS
GGGCACAGTATTAGGCTGGG+AGG 0.723334 7_1:-45916069 Msa1021510:CDS
ATGGTGGTAGTGGTTAACCA+AGG 0.736997 7_1:+45915723 None:intergenic
GGTATTGGTAGGTTACCAGG+TGG 0.762448 7_1:-45915780 Msa1021510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAGAACTTTGTAAATTT+GGG + chr7_1:45915700-45915719 None:intergenic 15.0%
!! ATTAAAGAACTTTGTAAATT+TGG + chr7_1:45915701-45915720 None:intergenic 15.0%
!!! ATAGAGTATTAATTTCATTT+TGG + chr7_1:45915811-45915830 None:intergenic 15.0%
!! TTAAAGAACTTTGTAAATTT+GGG + chr7_1:45915700-45915719 None:intergenic 15.0%
!! ATTAAAGAACTTTGTAAATT+TGG + chr7_1:45915701-45915720 None:intergenic 15.0%
!!! ATAGAGTATTAATTTCATTT+TGG + chr7_1:45915811-45915830 None:intergenic 15.0%
!!! TGTCTCTCAATTTTTTAAAT+CGG + chr7_1:45915664-45915683 None:intergenic 20.0%
!! GTTAATATCAAAACTATTAC+CGG + chr7_1:45915741-45915760 None:intergenic 20.0%
!!! TGTCTCTCAATTTTTTAAAT+CGG + chr7_1:45915664-45915683 None:intergenic 20.0%
!! GTTAATATCAAAACTATTAC+CGG + chr7_1:45915741-45915760 None:intergenic 20.0%
! ACATTTGTGATACAAGTTAT+AGG - chr7_1:45915621-45915640 Msa1021510:CDS 25.0%
! ATTAATACTCTATTGTCTGT+TGG - chr7_1:45915818-45915837 Msa1021510:CDS 25.0%
! ATAACACCATTGAAATTGTT+AGG - chr7_1:45916413-45916432 Msa1021510:CDS 25.0%
! TAACACCATTGAAATTGTTA+GGG - chr7_1:45916414-45916433 Msa1021510:CDS 25.0%
! TCTACGAATATTTAATGAAC+TGG - chr7_1:45916552-45916571 Msa1021510:CDS 25.0%
! ACATTTGTGATACAAGTTAT+AGG - chr7_1:45915621-45915640 Msa1021510:CDS 25.0%
! ATTAATACTCTATTGTCTGT+TGG - chr7_1:45915818-45915837 Msa1021510:CDS 25.0%
! ATAACACCATTGAAATTGTT+AGG - chr7_1:45916413-45916432 Msa1021510:CDS 25.0%
! TAACACCATTGAAATTGTTA+GGG - chr7_1:45916414-45916433 Msa1021510:CDS 25.0%
! TCTACGAATATTTAATGAAC+TGG - chr7_1:45916552-45916571 Msa1021510:CDS 25.0%
TTATAGGCATTCAAATTGTC+TGG - chr7_1:45915637-45915656 Msa1021510:CDS 30.0%
AAAATTGAGAGACAACTCTA+CGG - chr7_1:45915670-45915689 Msa1021510:CDS 30.0%
ATAAACACTAACAACTCTTC+CGG - chr7_1:45915719-45915738 Msa1021510:CDS 30.0%
TAAATGTCTACTTGGATCTT+GGG + chr7_1:45915873-45915892 None:intergenic 30.0%
TTATAGGCATTCAAATTGTC+TGG - chr7_1:45915637-45915656 Msa1021510:CDS 30.0%
AAAATTGAGAGACAACTCTA+CGG - chr7_1:45915670-45915689 Msa1021510:CDS 30.0%
ATAAACACTAACAACTCTTC+CGG - chr7_1:45915719-45915738 Msa1021510:CDS 30.0%
TAAATGTCTACTTGGATCTT+GGG + chr7_1:45915873-45915892 None:intergenic 30.0%
CTAAATGTCTACTTGGATCT+TGG + chr7_1:45915874-45915893 None:intergenic 35.0%
! TGTTGGTCTAAATGTCTACT+TGG + chr7_1:45915881-45915900 None:intergenic 35.0%
CATTTAGACCAACATGATGA+AGG - chr7_1:45915887-45915906 Msa1021510:CDS 35.0%
CTAAAATGCCTTCATCATGT+TGG + chr7_1:45915898-45915917 None:intergenic 35.0%
AGATGTAGATAATTCATCCG+AGG - chr7_1:45915970-45915989 Msa1021510:CDS 35.0%
TTTGCATTGTCCTCTATGTA+GGG - chr7_1:45916006-45916025 Msa1021510:CDS 35.0%
ATAAGAAGAGAAGTTGCTCA+AGG - chr7_1:45916080-45916099 Msa1021510:CDS 35.0%
TAAGAAGAGAAGTTGCTCAA+GGG - chr7_1:45916081-45916100 Msa1021510:CDS 35.0%
CAATATCACCATATTCTCTC+TGG + chr7_1:45916228-45916247 None:intergenic 35.0%
!! AAAATGGAGATGGTATTGGT+AGG - chr7_1:45916305-45916324 Msa1021510:CDS 35.0%
! ATCCATCATTTGGAACAAGA+TGG + chr7_1:45916395-45916414 None:intergenic 35.0%
!! CAATGGTGTTATCCATCATT+TGG + chr7_1:45916405-45916424 None:intergenic 35.0%
TGGTTCCCTAACAATTTCAA+TGG + chr7_1:45916422-45916441 None:intergenic 35.0%
CTAAATGTCTACTTGGATCT+TGG + chr7_1:45915874-45915893 None:intergenic 35.0%
! TGTTGGTCTAAATGTCTACT+TGG + chr7_1:45915881-45915900 None:intergenic 35.0%
CATTTAGACCAACATGATGA+AGG - chr7_1:45915887-45915906 Msa1021510:CDS 35.0%
CTAAAATGCCTTCATCATGT+TGG + chr7_1:45915898-45915917 None:intergenic 35.0%
AGATGTAGATAATTCATCCG+AGG - chr7_1:45915970-45915989 Msa1021510:CDS 35.0%
TTTGCATTGTCCTCTATGTA+GGG - chr7_1:45916006-45916025 Msa1021510:CDS 35.0%
ATAAGAAGAGAAGTTGCTCA+AGG - chr7_1:45916080-45916099 Msa1021510:CDS 35.0%
TAAGAAGAGAAGTTGCTCAA+GGG - chr7_1:45916081-45916100 Msa1021510:CDS 35.0%
CAATATCACCATATTCTCTC+TGG + chr7_1:45916228-45916247 None:intergenic 35.0%
!! AAAATGGAGATGGTATTGGT+AGG - chr7_1:45916305-45916324 Msa1021510:CDS 35.0%
! ATCCATCATTTGGAACAAGA+TGG + chr7_1:45916395-45916414 None:intergenic 35.0%
!! CAATGGTGTTATCCATCATT+TGG + chr7_1:45916405-45916424 None:intergenic 35.0%
TGGTTCCCTAACAATTTCAA+TGG + chr7_1:45916422-45916441 None:intergenic 35.0%
AGTTTCATGTCCTATCTGCA+TGG - chr7_1:45915538-45915557 Msa1021510:CDS 40.0%
AGTAGGAGAACAGCATTATG+TGG + chr7_1:45915569-45915588 None:intergenic 40.0%
TATCATGAGAGCTGCAAAGT+AGG + chr7_1:45915586-45915605 None:intergenic 40.0%
ACTTTGCAGCTCTCATGATA+AGG - chr7_1:45915586-45915605 Msa1021510:CDS 40.0%
CTTTGCAGCTCTCATGATAA+GGG - chr7_1:45915587-45915606 Msa1021510:CDS 40.0%
TTGTCTGTTGGAATTCCACA+AGG - chr7_1:45915830-45915849 Msa1021510:CDS 40.0%
GTTTGCATTGTCCTCTATGT+AGG - chr7_1:45916005-45916024 Msa1021510:CDS 40.0%
TTGCATTGTCCTCTATGTAG+GGG - chr7_1:45916007-45916026 Msa1021510:CDS 40.0%
! CTCATTTGCTGGAGATTATC+TGG - chr7_1:45916111-45916130 Msa1021510:CDS 40.0%
! GAGATTATCTGGAATTGCGT+AGG - chr7_1:45916122-45916141 Msa1021510:CDS 40.0%
TACGTTCTCGAAAATGGAGA+TGG - chr7_1:45916295-45916314 Msa1021510:CDS 40.0%
CTCGAAAATGGAGATGGTAT+TGG - chr7_1:45916301-45916320 Msa1021510:CDS 40.0%
! ATGGCAATGGTAATGTACCT+TGG - chr7_1:45916356-45916375 Msa1021510:CDS 40.0%
! CATCATTTGGAACAAGATGG+TGG + chr7_1:45916392-45916411 None:intergenic 40.0%
CACCATCTTGTTCCAAATGA+TGG - chr7_1:45916390-45916409 Msa1021510:CDS 40.0%
GTTCTTCAAATGGATGGTCA+AGG - chr7_1:45916449-45916468 Msa1021510:CDS 40.0%
!! TCTTTGGGGTGAGAATTTGT+TGG - chr7_1:45916501-45916520 Msa1021510:CDS 40.0%
!! CTTTGGGGTGAGAATTTGTT+GGG - chr7_1:45916502-45916521 Msa1021510:CDS 40.0%
AGTTTCATGTCCTATCTGCA+TGG - chr7_1:45915538-45915557 Msa1021510:CDS 40.0%
AGTAGGAGAACAGCATTATG+TGG + chr7_1:45915569-45915588 None:intergenic 40.0%
TATCATGAGAGCTGCAAAGT+AGG + chr7_1:45915586-45915605 None:intergenic 40.0%
ACTTTGCAGCTCTCATGATA+AGG - chr7_1:45915586-45915605 Msa1021510:CDS 40.0%
CTTTGCAGCTCTCATGATAA+GGG - chr7_1:45915587-45915606 Msa1021510:CDS 40.0%
TTGTCTGTTGGAATTCCACA+AGG - chr7_1:45915830-45915849 Msa1021510:CDS 40.0%
GTTTGCATTGTCCTCTATGT+AGG - chr7_1:45916005-45916024 Msa1021510:CDS 40.0%
TTGCATTGTCCTCTATGTAG+GGG - chr7_1:45916007-45916026 Msa1021510:CDS 40.0%
! CTCATTTGCTGGAGATTATC+TGG - chr7_1:45916111-45916130 Msa1021510:CDS 40.0%
! GAGATTATCTGGAATTGCGT+AGG - chr7_1:45916122-45916141 Msa1021510:CDS 40.0%
TACGTTCTCGAAAATGGAGA+TGG - chr7_1:45916295-45916314 Msa1021510:CDS 40.0%
CTCGAAAATGGAGATGGTAT+TGG - chr7_1:45916301-45916320 Msa1021510:CDS 40.0%
! ATGGCAATGGTAATGTACCT+TGG - chr7_1:45916356-45916375 Msa1021510:CDS 40.0%
! CATCATTTGGAACAAGATGG+TGG + chr7_1:45916392-45916411 None:intergenic 40.0%
CACCATCTTGTTCCAAATGA+TGG - chr7_1:45916390-45916409 Msa1021510:CDS 40.0%
GTTCTTCAAATGGATGGTCA+AGG - chr7_1:45916449-45916468 Msa1021510:CDS 40.0%
!! TCTTTGGGGTGAGAATTTGT+TGG - chr7_1:45916501-45916520 Msa1021510:CDS 40.0%
!! CTTTGGGGTGAGAATTTGTT+GGG - chr7_1:45916502-45916521 Msa1021510:CDS 40.0%
GCATGCTCTTCACAGAGAAT+TGG - chr7_1:45915511-45915530 Msa1021510:CDS 45.0%
GGAGAACAGCATTATGTGGA+TGG + chr7_1:45915565-45915584 None:intergenic 45.0%
AATTCCACAAGGATCGAGAC+AGG - chr7_1:45915841-45915860 Msa1021510:CDS 45.0%
ATTCCACAAGGATCGAGACA+GGG - chr7_1:45915842-45915861 Msa1021510:CDS 45.0%
!! TGCTGATTCTGAGAACTTGC+AGG - chr7_1:45915922-45915941 Msa1021510:CDS 45.0%
! ATTCTGAGAACTTGCAGGAC+AGG - chr7_1:45915927-45915946 Msa1021510:CDS 45.0%
! TTCTGAGAACTTGCAGGACA+GGG - chr7_1:45915928-45915947 Msa1021510:CDS 45.0%
CAAACTCGACTTTGAGTCCT+CGG + chr7_1:45915990-45916009 None:intergenic 45.0%
AATACTGTGCCCCTACATAG+AGG + chr7_1:45916019-45916038 None:intergenic 45.0%
! CTATGTAGGGGCACAGTATT+AGG - chr7_1:45916019-45916038 Msa1021510:CDS 45.0%
AGGGATTCATGCTCATTTGC+TGG - chr7_1:45916100-45916119 Msa1021510:CDS 45.0%
CTTGTCGGATCAACATCAGA+GGG + chr7_1:45916178-45916197 None:intergenic 45.0%
TCTTGTCGGATCAACATCAG+AGG + chr7_1:45916179-45916198 None:intergenic 45.0%
TTTGAGCGCCAGAGAGAATA+TGG - chr7_1:45916217-45916236 Msa1021510:CDS 45.0%
GGGGATTACGTTCTCGAAAA+TGG - chr7_1:45916289-45916308 Msa1021510:CDS 45.0%
!! GATGGTATTGGTAGGTTACC+AGG - chr7_1:45916313-45916332 Msa1021510:CDS 45.0%
!! ATGGTGGTAGTGGTTAACCA+AGG + chr7_1:45916376-45916395 None:intergenic 45.0%
! TTGGAACAAGATGGTGGTAG+TGG + chr7_1:45916386-45916405 None:intergenic 45.0%
CCATTTGAAGAACGAGCTCT+TGG + chr7_1:45916442-45916461 None:intergenic 45.0%
CCAAGAGCTCGTTCTTCAAA+TGG - chr7_1:45916439-45916458 Msa1021510:CDS 45.0%
GAGCTCGTTCTTCAAATGGA+TGG - chr7_1:45916443-45916462 Msa1021510:CDS 45.0%
AAGATGCATCTCATGTCCCA+AGG - chr7_1:45916578-45916597 Msa1021510:CDS 45.0%
ACCTCGTCCTATTCAAACGA+CGG + chr7_1:45916609-45916628 None:intergenic 45.0%
GCATGCTCTTCACAGAGAAT+TGG - chr7_1:45915511-45915530 Msa1021510:CDS 45.0%
GGAGAACAGCATTATGTGGA+TGG + chr7_1:45915565-45915584 None:intergenic 45.0%
AATTCCACAAGGATCGAGAC+AGG - chr7_1:45915841-45915860 Msa1021510:CDS 45.0%
ATTCCACAAGGATCGAGACA+GGG - chr7_1:45915842-45915861 Msa1021510:CDS 45.0%
!! TGCTGATTCTGAGAACTTGC+AGG - chr7_1:45915922-45915941 Msa1021510:CDS 45.0%
! ATTCTGAGAACTTGCAGGAC+AGG - chr7_1:45915927-45915946 Msa1021510:CDS 45.0%
! TTCTGAGAACTTGCAGGACA+GGG - chr7_1:45915928-45915947 Msa1021510:CDS 45.0%
CAAACTCGACTTTGAGTCCT+CGG + chr7_1:45915990-45916009 None:intergenic 45.0%
AATACTGTGCCCCTACATAG+AGG + chr7_1:45916019-45916038 None:intergenic 45.0%
! CTATGTAGGGGCACAGTATT+AGG - chr7_1:45916019-45916038 Msa1021510:CDS 45.0%
AGGGATTCATGCTCATTTGC+TGG - chr7_1:45916100-45916119 Msa1021510:CDS 45.0%
CTTGTCGGATCAACATCAGA+GGG + chr7_1:45916178-45916197 None:intergenic 45.0%
TCTTGTCGGATCAACATCAG+AGG + chr7_1:45916179-45916198 None:intergenic 45.0%
TTTGAGCGCCAGAGAGAATA+TGG - chr7_1:45916217-45916236 Msa1021510:CDS 45.0%
GGGGATTACGTTCTCGAAAA+TGG - chr7_1:45916289-45916308 Msa1021510:CDS 45.0%
!! GATGGTATTGGTAGGTTACC+AGG - chr7_1:45916313-45916332 Msa1021510:CDS 45.0%
!! ATGGTGGTAGTGGTTAACCA+AGG + chr7_1:45916376-45916395 None:intergenic 45.0%
! TTGGAACAAGATGGTGGTAG+TGG + chr7_1:45916386-45916405 None:intergenic 45.0%
CCATTTGAAGAACGAGCTCT+TGG + chr7_1:45916442-45916461 None:intergenic 45.0%
CCAAGAGCTCGTTCTTCAAA+TGG - chr7_1:45916439-45916458 Msa1021510:CDS 45.0%
GAGCTCGTTCTTCAAATGGA+TGG - chr7_1:45916443-45916462 Msa1021510:CDS 45.0%
AAGATGCATCTCATGTCCCA+AGG - chr7_1:45916578-45916597 Msa1021510:CDS 45.0%
ACCTCGTCCTATTCAAACGA+CGG + chr7_1:45916609-45916628 None:intergenic 45.0%
TGTGGATGGTCCATGCAGAT+AGG + chr7_1:45915551-45915570 None:intergenic 50.0%
! TAGGGGCACAGTATTAGGCT+GGG - chr7_1:45916024-45916043 Msa1021510:CDS 50.0%
TGGAATTGCGTAGGCATGCT+AGG - chr7_1:45916131-45916150 Msa1021510:CDS 50.0%
ACATCAGAGGGACGAGAAGT+AGG + chr7_1:45916166-45916185 None:intergenic 50.0%
ATCCGACAAGAGAACAAGCG+TGG - chr7_1:45916188-45916207 Msa1021510:CDS 50.0%
TGCCACGCTTGTTCTCTTGT+CGG + chr7_1:45916193-45916212 None:intergenic 50.0%
GCTATTCAGTCTGCCATACC+AGG - chr7_1:45916253-45916272 Msa1021510:CDS 50.0%
AACTACCACAGCTCCTGGTA+TGG + chr7_1:45916269-45916288 None:intergenic 50.0%
ATACCAGGAGCTGTGGTAGT+TGG - chr7_1:45916268-45916287 Msa1021510:CDS 50.0%
TACCAGGAGCTGTGGTAGTT+GGG - chr7_1:45916269-45916288 Msa1021510:CDS 50.0%
!! GGTATTGGTAGGTTACCAGG+TGG - chr7_1:45916316-45916335 Msa1021510:CDS 50.0%
ATTGGTAGGTTACCAGGTGG+TGG - chr7_1:45916319-45916338 Msa1021510:CDS 50.0%
! TAGGTTACCAGGTGGTGGTA+GGG - chr7_1:45916324-45916343 Msa1021510:CDS 50.0%
TGACCGTCGTCGCTATCTTT+GGG - chr7_1:45916486-45916505 Msa1021510:CDS 50.0%
ATGCATCTCATGTCCCAAGG+AGG - chr7_1:45916581-45916600 Msa1021510:CDS 50.0%
TGTGGATGGTCCATGCAGAT+AGG + chr7_1:45915551-45915570 None:intergenic 50.0%
! TAGGGGCACAGTATTAGGCT+GGG - chr7_1:45916024-45916043 Msa1021510:CDS 50.0%
TGGAATTGCGTAGGCATGCT+AGG - chr7_1:45916131-45916150 Msa1021510:CDS 50.0%
ACATCAGAGGGACGAGAAGT+AGG + chr7_1:45916166-45916185 None:intergenic 50.0%
ATCCGACAAGAGAACAAGCG+TGG - chr7_1:45916188-45916207 Msa1021510:CDS 50.0%
TGCCACGCTTGTTCTCTTGT+CGG + chr7_1:45916193-45916212 None:intergenic 50.0%
GCTATTCAGTCTGCCATACC+AGG - chr7_1:45916253-45916272 Msa1021510:CDS 50.0%
AACTACCACAGCTCCTGGTA+TGG + chr7_1:45916269-45916288 None:intergenic 50.0%
ATACCAGGAGCTGTGGTAGT+TGG - chr7_1:45916268-45916287 Msa1021510:CDS 50.0%
TACCAGGAGCTGTGGTAGTT+GGG - chr7_1:45916269-45916288 Msa1021510:CDS 50.0%
!! GGTATTGGTAGGTTACCAGG+TGG - chr7_1:45916316-45916335 Msa1021510:CDS 50.0%
ATTGGTAGGTTACCAGGTGG+TGG - chr7_1:45916319-45916338 Msa1021510:CDS 50.0%
! TAGGTTACCAGGTGGTGGTA+GGG - chr7_1:45916324-45916343 Msa1021510:CDS 50.0%
TGACCGTCGTCGCTATCTTT+GGG - chr7_1:45916486-45916505 Msa1021510:CDS 50.0%
ATGCATCTCATGTCCCAAGG+AGG - chr7_1:45916581-45916600 Msa1021510:CDS 50.0%
TCACCCTGTCTCGATCCTTG+TGG + chr7_1:45915848-45915867 None:intergenic 55.0%
! GTAGGGGCACAGTATTAGGC+TGG - chr7_1:45916023-45916042 Msa1021510:CDS 55.0%
AGGCTGGGAGGTTGTTGAAG+AGG - chr7_1:45916039-45916058 Msa1021510:CDS 55.0%
ACCAGGAGCTGTGGTAGTTG+GGG - chr7_1:45916270-45916289 Msa1021510:CDS 55.0%
! GTAGGTTACCAGGTGGTGGT+AGG - chr7_1:45916323-45916342 Msa1021510:CDS 55.0%
! TTACCAGGTGGTGGTAGGGA+GGG - chr7_1:45916328-45916347 Msa1021510:CDS 55.0%
CTGACCGTCGTCGCTATCTT+TGG - chr7_1:45916485-45916504 Msa1021510:CDS 55.0%
GACCGTCGTCGCTATCTTTG+GGG - chr7_1:45916487-45916506 Msa1021510:CDS 55.0%
CACCCCAAAGATAGCGACGA+CGG + chr7_1:45916492-45916511 None:intergenic 55.0%
GCCGTCGTTTGAATAGGACG+AGG - chr7_1:45916605-45916624 Msa1021510:CDS 55.0%
TCACCCTGTCTCGATCCTTG+TGG + chr7_1:45915848-45915867 None:intergenic 55.0%
! GTAGGGGCACAGTATTAGGC+TGG - chr7_1:45916023-45916042 Msa1021510:CDS 55.0%
AGGCTGGGAGGTTGTTGAAG+AGG - chr7_1:45916039-45916058 Msa1021510:CDS 55.0%
ACCAGGAGCTGTGGTAGTTG+GGG - chr7_1:45916270-45916289 Msa1021510:CDS 55.0%
! GTAGGTTACCAGGTGGTGGT+AGG - chr7_1:45916323-45916342 Msa1021510:CDS 55.0%
! TTACCAGGTGGTGGTAGGGA+GGG - chr7_1:45916328-45916347 Msa1021510:CDS 55.0%
CTGACCGTCGTCGCTATCTT+TGG - chr7_1:45916485-45916504 Msa1021510:CDS 55.0%
GACCGTCGTCGCTATCTTTG+GGG - chr7_1:45916487-45916506 Msa1021510:CDS 55.0%
CACCCCAAAGATAGCGACGA+CGG + chr7_1:45916492-45916511 None:intergenic 55.0%
GCCGTCGTTTGAATAGGACG+AGG - chr7_1:45916605-45916624 Msa1021510:CDS 55.0%
GCAGGACAGGGCTGTTCTTG+AGG - chr7_1:45915940-45915959 Msa1021510:CDS 60.0%
GGACAGGGCTGTTCTTGAGG+AGG - chr7_1:45915943-45915962 Msa1021510:CDS 60.0%
GGGCACAGTATTAGGCTGGG+AGG - chr7_1:45916027-45916046 Msa1021510:CDS 60.0%
GTCTGCCATACCAGGAGCTG+TGG - chr7_1:45916261-45916280 Msa1021510:CDS 60.0%
TCCCCAACTACCACAGCTCC+TGG + chr7_1:45916274-45916293 None:intergenic 60.0%
! GTTACCAGGTGGTGGTAGGG+AGG - chr7_1:45916327-45916346 Msa1021510:CDS 60.0%
! TACCAGGTGGTGGTAGGGAG+GGG - chr7_1:45916329-45916348 Msa1021510:CDS 60.0%
AGGGAGGGGAGCAATGGCAA+TGG - chr7_1:45916343-45916362 Msa1021510:CDS 60.0%
TCAAACGACGGCGCCTCCTT+GGG + chr7_1:45916597-45916616 None:intergenic 60.0%
TTCAAACGACGGCGCCTCCT+TGG + chr7_1:45916598-45916617 None:intergenic 60.0%
!! GGAGGCGCCGTCGTTTGAAT+AGG - chr7_1:45916599-45916618 Msa1021510:CDS 60.0%
GCAGGACAGGGCTGTTCTTG+AGG - chr7_1:45915940-45915959 Msa1021510:CDS 60.0%
GGACAGGGCTGTTCTTGAGG+AGG - chr7_1:45915943-45915962 Msa1021510:CDS 60.0%
GGGCACAGTATTAGGCTGGG+AGG - chr7_1:45916027-45916046 Msa1021510:CDS 60.0%
GTCTGCCATACCAGGAGCTG+TGG - chr7_1:45916261-45916280 Msa1021510:CDS 60.0%
TCCCCAACTACCACAGCTCC+TGG + chr7_1:45916274-45916293 None:intergenic 60.0%
! GTTACCAGGTGGTGGTAGGG+AGG - chr7_1:45916327-45916346 Msa1021510:CDS 60.0%
! TACCAGGTGGTGGTAGGGAG+GGG - chr7_1:45916329-45916348 Msa1021510:CDS 60.0%
AGGGAGGGGAGCAATGGCAA+TGG - chr7_1:45916343-45916362 Msa1021510:CDS 60.0%
TCAAACGACGGCGCCTCCTT+GGG + chr7_1:45916597-45916616 None:intergenic 60.0%
TTCAAACGACGGCGCCTCCT+TGG + chr7_1:45916598-45916617 None:intergenic 60.0%
!! GGAGGCGCCGTCGTTTGAAT+AGG - chr7_1:45916599-45916618 Msa1021510:CDS 60.0%
GGTGGTAGGGAGGGGAGCAA+TGG - chr7_1:45916337-45916356 Msa1021510:CDS 65.0%
GGTGGTAGGGAGGGGAGCAA+TGG - chr7_1:45916337-45916356 Msa1021510:CDS 65.0%
CTCCCCTCCCTACCACCACC+TGG + chr7_1:45916334-45916353 None:intergenic 70.0%
CTCCCCTCCCTACCACCACC+TGG + chr7_1:45916334-45916353 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 45915470 45916648 45915470 ID=Msa1021510;Name=Msa1021510
chr7_1 mRNA 45915470 45916648 45915470 ID=Msa1021510-mRNA-1;Parent=Msa1021510;Name=Msa1021510-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|392
chr7_1 exon 45915470 45916648 45915470 ID=Msa1021510-mRNA-1:exon:9125;Parent=Msa1021510-mRNA-1
chr7_1 CDS 45915470 45916648 45915470 ID=Msa1021510-mRNA-1:cds;Parent=Msa1021510-mRNA-1
Gene Sequence

>Msa1021510

ATGGCTGGTTTTAAGCGAAGATTATGTAATGATTCAGATATGCATGCTCTTCACAGAGAATTGGATGAAGTTTCATGTCCTATCTGCATGGACCATCCACATAATGCTGTTCTCCTACTTTGCAGCTCTCATGATAAGGGCTGCAGATCTTACATTTGTGATACAAGTTATAGGCATTCAAATTGTCTGGACCGATTTAAAAAATTGAGAGACAACTCTACGGAGAACCCAAATTTACAAAGTTCTTTAATAAACACTAACAACTCTTCCGGTAATAGTTTTGATATTAACTTTACTATGCAATCTGACATGCATAATGTTGATGAATTATTACTCTACCAAAATGAAATTAATACTCTATTGTCTGTTGGAATTCCACAAGGATCGAGACAGGGTGATGCCCAAGATCCAAGTAGACATTTAGACCAACATGATGAAGGCATTTTAGAAACTGCTGATTCTGAGAACTTGCAGGACAGGGCTGTTCTTGAGGAGGAATTAGATGTAGATAATTCATCCGAGGACTCAAAGTCGAGTTTGCATTGTCCTCTATGTAGGGGCACAGTATTAGGCTGGGAGGTTGTTGAAGAGGCTAGAAATTATCTGAATAATAAGAAGAGAAGTTGCTCAAGGGATTCATGCTCATTTGCTGGAGATTATCTGGAATTGCGTAGGCATGCTAGGAGAGTTCATCCTACTTCTCGTCCCTCTGATGTTGATCCGACAAGAGAACAAGCGTGGCAACAATTTGAGCGCCAGAGAGAATATGGTGATATTGTGAGTGCTATTCAGTCTGCCATACCAGGAGCTGTGGTAGTTGGGGATTACGTTCTCGAAAATGGAGATGGTATTGGTAGGTTACCAGGTGGTGGTAGGGAGGGGAGCAATGGCAATGGTAATGTACCTTGGTTAACCACTACCACCATCTTGTTCCAAATGATGGATAACACCATTGAAATTGTTAGGGAACCAAGAGCTCGTTCTTCAAATGGATGGTCAAGGCATCGTCGTTCATCTGACCGTCGTCGCTATCTTTGGGGTGAGAATTTGTTGGGTCTTCAAGATAATGAAGTCGAAGAAGATCTACGAATATTTAATGAACTGGTTGAAGATGCATCTCATGTCCCAAGGAGGCGCCGTCGTTTGAATAGGACGAGGTCCAACGAAGATCATTCATGA

Protein sequence

>Msa1021510

MAGFKRRLCNDSDMHALHRELDEVSCPICMDHPHNAVLLLCSSHDKGCRSYICDTSYRHSNCLDRFKKLRDNSTENPNLQSSLINTNNSSGNSFDINFTMQSDMHNVDELLLYQNEINTLLSVGIPQGSRQGDAQDPSRHLDQHDEGILETADSENLQDRAVLEEELDVDNSSEDSKSSLHCPLCRGTVLGWEVVEEARNYLNNKKRSCSRDSCSFAGDYLELRRHARRVHPTSRPSDVDPTREQAWQQFERQREYGDIVSAIQSAIPGAVVVGDYVLENGDGIGRLPGGGREGSNGNGNVPWLTTTTILFQMMDNTIEIVREPRARSSNGWSRHRRSSDRRRYLWGENLLGLQDNEVEEDLRIFNELVEDASHVPRRRRRLNRTRSNEDHS*