Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299060 | XP_003597087.1 | 92.754 | 414 | 7 | 1 | 1 | 391 | 1 | 414 | 0.0 | 771 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299060 | sp|Q9M0Y3|ENT3_ARATH | 68.137 | 408 | 106 | 2 | 5 | 389 | 8 | 414 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299060 | G7IRM9 | 92.754 | 414 | 7 | 1 | 1 | 391 | 1 | 414 | 0.0 | 771 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021210 | Msa0299060 | 0.801368 | 9.304819e-49 | -8.615850e-47 |
| Msa0026910 | Msa0299060 | 0.803107 | 4.081768e-49 | -8.615850e-47 |
| Msa0031310 | Msa0299060 | 0.809671 | 1.686340e-50 | -8.615850e-47 |
| Msa0042550 | Msa0299060 | 0.801948 | 7.075160e-49 | -8.615850e-47 |
| Msa0058600 | Msa0299060 | 0.808961 | 2.394937e-50 | -8.615850e-47 |
| Msa0064300 | Msa0299060 | 0.800521 | 1.385965e-48 | -8.615850e-47 |
| Msa0078610 | Msa0299060 | 0.807759 | 4.320584e-50 | -8.615850e-47 |
| Msa0084720 | Msa0299060 | 0.800802 | 1.215044e-48 | -8.615850e-47 |
| Msa0114430 | Msa0299060 | 0.803184 | 3.935076e-49 | -8.615850e-47 |
| Msa0135410 | Msa0299060 | 0.813131 | 2.989344e-51 | -8.615850e-47 |
| Msa0137570 | Msa0299060 | 0.801629 | 8.227639e-49 | -8.615850e-47 |
| Msa0178510 | Msa0299060 | 0.811210 | 7.846183e-51 | -8.615850e-47 |
| Msa0187830 | Msa0299060 | 0.815713 | 8.027686e-52 | -8.615850e-47 |
| Msa0244140 | Msa0299060 | 0.807697 | 4.453930e-50 | -8.615850e-47 |
| Msa0244190 | Msa0299060 | 0.813508 | 2.470871e-51 | -8.615850e-47 |
| Msa0278190 | Msa0299060 | 0.811116 | 8.223467e-51 | -8.615850e-47 |
| Msa0299060 | Msa0299660 | 0.814768 | 1.302089e-51 | -8.615850e-47 |
| Msa0299060 | Msa0330980 | 0.818222 | 2.193457e-52 | -8.615850e-47 |
| Msa0299060 | Msa0340690 | 0.842386 | 2.668805e-58 | -8.615850e-47 |
| Msa0299060 | Msa0340710 | 0.843980 | 1.003728e-58 | -8.615850e-47 |
| Msa0299060 | Msa0371950 | 0.821526 | 3.853334e-53 | -8.615850e-47 |
| Msa0299060 | Msa0393620 | 0.821154 | 4.694202e-53 | -8.615850e-47 |
| Msa0299060 | Msa0394470 | 0.809838 | 1.552167e-50 | -8.615850e-47 |
| Msa0299060 | Msa0398200 | 0.801471 | 8.865024e-49 | -8.615850e-47 |
| Msa0299060 | Msa0409200 | 0.801628 | 8.230086e-49 | -8.615850e-47 |
| Msa0299060 | Msa0417330 | 0.807648 | 4.561300e-50 | -8.615850e-47 |
| Msa0299060 | Msa0485490 | 0.829252 | 5.711147e-55 | -8.615850e-47 |
| Msa0299060 | Msa0518380 | 0.807537 | 4.816739e-50 | -8.615850e-47 |
| Msa0299060 | Msa0525610 | 0.824266 | 8.861366e-54 | -8.615850e-47 |
| Msa0299060 | Msa0535630 | 0.800875 | 1.173913e-48 | -8.615850e-47 |
| Msa0299060 | Msa0592180 | 0.802318 | 5.938527e-49 | -8.615850e-47 |
| Msa0299060 | Msa0624960 | 0.804079 | 2.566192e-49 | -8.615850e-47 |
| Msa0299060 | Msa0661320 | 0.802189 | 6.313458e-49 | -8.615850e-47 |
| Msa0299060 | Msa0667740 | 0.810227 | 1.279837e-50 | -8.615850e-47 |
| Msa0299060 | Msa0748730 | 0.814090 | 1.838559e-51 | -8.615850e-47 |
| Msa0299060 | Msa0779090 | 0.800499 | 1.400349e-48 | -8.615850e-47 |
| Msa0299060 | Msa0820850 | 0.800114 | 1.677228e-48 | -8.615850e-47 |
| Msa0299060 | Msa0830230 | 0.808948 | 2.409737e-50 | -8.615850e-47 |
| Msa0299060 | Msa0861130 | 0.804548 | 2.049146e-49 | -8.615850e-47 |
| Msa0299060 | Msa0868160 | 0.804848 | 1.773641e-49 | -8.615850e-47 |
| Msa0299060 | Msa0924310 | 0.803491 | 3.398615e-49 | -8.615850e-47 |
| Msa0299060 | Msa0925870 | 0.812305 | 4.532555e-51 | -8.615850e-47 |
| Msa0299060 | Msa0935770 | 0.801046 | 1.083126e-48 | -8.615850e-47 |
| Msa0299060 | Msa0960390 | 0.802108 | 6.560556e-49 | -8.615850e-47 |
| Msa0299060 | Msa0972810 | 0.813854 | 2.072844e-51 | -8.615850e-47 |
| Msa0299060 | Msa1006000 | 0.801548 | 8.546809e-49 | -8.615850e-47 |
| Msa0299060 | Msa1050680 | 0.819064 | 1.413133e-52 | -8.615850e-47 |
| Msa0299060 | Msa1080960 | 0.809504 | 1.831445e-50 | -8.615850e-47 |
| Msa0299060 | Msa1115280 | 0.808208 | 3.467983e-50 | -8.615850e-47 |
| Msa0299060 | Msa1205390 | 0.817698 | 2.881927e-52 | -8.615850e-47 |
| Msa0299060 | Msa1207350 | 0.817911 | 2.578993e-52 | -8.615850e-47 |
| Msa0299060 | Msa1215920 | 0.814699 | 1.348488e-51 | -8.615850e-47 |
| Msa0299060 | Msa1305200 | 0.807231 | 5.591357e-50 | -8.615850e-47 |
| Msa0299060 | Msa1305350 | 0.803424 | 3.509683e-49 | -8.615850e-47 |
| Msa0299060 | Msa1338400 | 0.811677 | 6.210949e-51 | -8.615850e-47 |
| Msa0299060 | Msa1372150 | 0.810528 | 1.102407e-50 | -8.615850e-47 |
| Msa0299060 | Msa1394310 | 0.839271 | 1.750970e-57 | -8.615850e-47 |
| Msa0299060 | Msa1440940 | 0.808238 | 3.416297e-50 | -8.615850e-47 |
| Msa0299060 | Msa1462360 | 0.820334 | 7.247378e-53 | -8.615850e-47 |
| Msa0299060 | Msa1462930 | 0.803846 | 2.868784e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299060 | MtrunA17_Chr2g0323381 | 92.754 | 414 | 7 | 1 | 1 | 391 | 1 | 414 | 0.0 | 771 |
| Msa0299060 | MtrunA17_Chr4g0022871 | 79.469 | 414 | 62 | 1 | 1 | 391 | 1 | 414 | 0.0 | 663 |
| Msa0299060 | MtrunA17_Chr4g0022861 | 73.869 | 398 | 81 | 1 | 17 | 391 | 1 | 398 | 0.0 | 599 |
| Msa0299060 | MtrunA17_Chr2g0280971 | 66.093 | 407 | 114 | 2 | 7 | 389 | 35 | 441 | 0.0 | 537 |
| Msa0299060 | MtrunA17_Chr2g0280991 | 65.686 | 408 | 115 | 3 | 7 | 389 | 14 | 421 | 0.0 | 535 |
| Msa0299060 | MtrunA17_Chr4g0022801 | 69.444 | 396 | 70 | 2 | 47 | 391 | 10 | 405 | 0.0 | 530 |
| Msa0299060 | MtrunA17_Chr8g0335821 | 57.300 | 363 | 130 | 2 | 52 | 389 | 2 | 364 | 2.15e-130 | 379 |
| Msa0299060 | MtrunA17_Chr1g0184961 | 66.535 | 254 | 50 | 2 | 47 | 270 | 104 | 352 | 2.38e-109 | 325 |
| Msa0299060 | MtrunA17_Chr2g0280961 | 65.873 | 126 | 42 | 1 | 221 | 345 | 106 | 231 | 1.50e-49 | 167 |
| Msa0299060 | MtrunA17_Chr2g0280961 | 31.176 | 170 | 77 | 4 | 52 | 198 | 2 | 154 | 9.47e-13 | 67.4 |
| Msa0299060 | MtrunA17_Chr4g0020331 | 31.566 | 415 | 221 | 13 | 11 | 387 | 26 | 415 | 6.83e-49 | 170 |
| Msa0299060 | MtrunA17_Chr3g0103741 | 29.000 | 400 | 236 | 7 | 18 | 387 | 42 | 423 | 7.57e-42 | 152 |
| Msa0299060 | MtrunA17_Chr4g0063911 | 27.316 | 421 | 236 | 10 | 5 | 387 | 10 | 398 | 7.82e-35 | 132 |
| Msa0299060 | MtrunA17_Chr1g0184971 | 74.603 | 63 | 16 | 0 | 273 | 335 | 2 | 64 | 1.04e-27 | 105 |
| Msa0299060 | MtrunA17_Chr4g0022811 | 76.190 | 42 | 10 | 0 | 5 | 46 | 3 | 44 | 1.92e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299060 | AT4G05120.1 | 68.137 | 408 | 106 | 2 | 5 | 389 | 8 | 414 | 0.0 | 569 |
| Msa0299060 | AT4G05120.2 | 68.137 | 408 | 106 | 2 | 5 | 389 | 8 | 414 | 0.0 | 569 |
| Msa0299060 | AT4G05110.3 | 64.951 | 408 | 119 | 2 | 5 | 389 | 8 | 414 | 0.0 | 541 |
| Msa0299060 | AT4G05110.1 | 64.951 | 408 | 119 | 2 | 5 | 389 | 8 | 414 | 0.0 | 541 |
| Msa0299060 | AT4G05110.2 | 64.706 | 408 | 120 | 2 | 5 | 389 | 8 | 414 | 0.0 | 541 |
| Msa0299060 | AT4G05140.1 | 64.216 | 408 | 123 | 1 | 5 | 389 | 8 | 415 | 0.0 | 538 |
| Msa0299060 | AT4G05130.1 | 61.800 | 411 | 131 | 3 | 5 | 391 | 8 | 416 | 0.0 | 520 |
| Msa0299060 | AT3G09990.1 | 61.765 | 408 | 132 | 2 | 8 | 391 | 10 | 417 | 3.32e-179 | 505 |
| Msa0299060 | AT1G61630.1 | 58.852 | 418 | 139 | 4 | 1 | 389 | 1 | 414 | 8.55e-167 | 473 |
| Msa0299060 | AT1G70330.1 | 29.854 | 412 | 224 | 7 | 16 | 387 | 64 | 450 | 1.55e-49 | 173 |
| Msa0299060 | AT1G02630.1 | 28.814 | 413 | 231 | 9 | 5 | 387 | 10 | 389 | 1.36e-42 | 153 |
| Msa0299060 | AT1G02630.2 | 27.273 | 209 | 126 | 3 | 5 | 189 | 10 | 216 | 4.15e-18 | 85.1 |
Find 115 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTTGAAATTCTTGAAAT+TGG | 0.116609 | 2_3:+53485562 | Msa0299060:CDS |
| GTGCATTAACCTCTGCTTTA+AGG | 0.117350 | 2_3:+53484642 | Msa0299060:CDS |
| TTTCTCCATGGTAGATTTAT+AGG | 0.187275 | 2_3:+53486291 | Msa0299060:three_prime_UTR |
| GACTCTTCCCTCTTCCTTCT+TGG | 0.207482 | 2_3:+53482317 | Msa0299060:five_prime_UTR |
| TTACTACATTTACTTGTTTC+CGG | 0.228601 | 2_3:+53483349 | Msa0299060:CDS |
| GAAAGAAATAGTACTTCTTT+AGG | 0.270591 | 2_3:-53485070 | None:intergenic |
| AGAGATATGATATGGTTAAA+TGG | 0.271531 | 2_3:+53486190 | Msa0299060:three_prime_UTR |
| ATTTCTATGTAATTTCAAAA+TGG | 0.282630 | 2_3:+53486425 | Msa0299060:three_prime_UTR |
| AGCAGCATTTGATAATTCTA+AGG | 0.310431 | 2_3:+53484676 | Msa0299060:CDS |
| GGGAAAATATGCTGCAATAT+TGG | 0.315284 | 2_3:+53483265 | Msa0299060:intron |
| GATAATGTTGACATCATTCT+TGG | 0.317000 | 2_3:+53485679 | Msa0299060:CDS |
| ATCAGCACCCAAAGGTTATA+AGG | 0.328140 | 2_3:+53485739 | Msa0299060:CDS |
| GTACTTCTTTAGGTATTGTT+TGG | 0.329362 | 2_3:-53485060 | None:intergenic |
| GGTTAAATGGCACAACAAAA+AGG | 0.338949 | 2_3:+53486203 | Msa0299060:three_prime_UTR |
| TAATTTCAAAATGGCTGTAT+TGG | 0.343524 | 2_3:+53486434 | Msa0299060:three_prime_UTR |
| AGGTCTTACCTTATAACCTT+TGG | 0.354635 | 2_3:-53485747 | None:intergenic |
| CTATGTGGTTTGGCAGCATC+TGG | 0.357354 | 2_3:+53484620 | Msa0299060:CDS |
| GGTCTTACCTTATAACCTTT+GGG | 0.357526 | 2_3:-53485746 | None:intergenic |
| ATATTGGTATGCTTCCTTCT+TGG | 0.358786 | 2_3:+53483281 | Msa0299060:CDS |
| ACACAAAATGCATTGAAGTA+TGG | 0.361696 | 2_3:+53486389 | Msa0299060:three_prime_UTR |
| CTAGACTGGTTGTGGTTGAT+AGG | 0.364036 | 2_3:+53486062 | Msa0299060:CDS |
| ATAGTGTCAATGCATAAATT+AGG | 0.364083 | 2_3:-53485249 | None:intergenic |
| AAGCTCAAAGAATGTTGATA+TGG | 0.364975 | 2_3:-53484918 | None:intergenic |
| TACAATGTGTGGGATCTAAT+AGG | 0.376699 | 2_3:+53485527 | Msa0299060:CDS |
| TAGCTGACCTGAATGAATTC+TGG | 0.378851 | 2_3:-53484132 | None:intergenic |
| GATACCGGAGCACATAGTTT+AGG | 0.399627 | 2_3:+53485298 | Msa0299060:CDS |
| AAGATCAGCTGAAACCGTTT+TGG | 0.400371 | 2_3:-53485023 | None:intergenic |
| GTACGGTAGTATTTCACAAT+TGG | 0.413573 | 2_3:-53484980 | None:intergenic |
| ACAGTCTTTCCTATGTGGTT+TGG | 0.413718 | 2_3:+53484610 | Msa0299060:intron |
| ATAATGTTGACATCATTCTT+GGG | 0.414131 | 2_3:+53485680 | Msa0299060:CDS |
| GGGTCCAGAACAAAATGCTT+TGG | 0.429540 | 2_3:+53485989 | Msa0299060:intron |
| GTATGCTTCCTTCTTGGCAA+TGG | 0.430207 | 2_3:+53483287 | Msa0299060:CDS |
| CATGTTCAAGGTGGAATGAT+TGG | 0.433600 | 2_3:+53484090 | Msa0299060:CDS |
| GTATCTTCAGACAGAAATCC+TGG | 0.434888 | 2_3:-53485280 | None:intergenic |
| CATGAAGCCAGAATTCATTC+AGG | 0.440760 | 2_3:+53484125 | Msa0299060:CDS |
| GGTCCAGAACAAAATGCTTT+GGG | 0.444913 | 2_3:+53485990 | Msa0299060:CDS |
| TAGTTGGATTTAGCAACATC+TGG | 0.446987 | 2_3:+53484000 | Msa0299060:intron |
| TTGGTGTTGTTTCTACTTGG+AGG | 0.450252 | 2_3:+53486020 | Msa0299060:CDS |
| TGCTATATTGTCTTATAATG+AGG | 0.452571 | 2_3:+53483820 | Msa0299060:CDS |
| TTGTTGGTGTTGTTTCTACT+TGG | 0.466918 | 2_3:+53486017 | Msa0299060:CDS |
| AAATGCTTTGGGAAACTTGT+TGG | 0.472777 | 2_3:+53486001 | Msa0299060:CDS |
| TCTAAGGATGGTCTTAGAAA+AGG | 0.472918 | 2_3:+53484692 | Msa0299060:CDS |
| TGTGCAATTAGTGGTGCCTT+TGG | 0.477018 | 2_3:+53484054 | Msa0299060:CDS |
| TGCAGAATTATCATCCCTCC+AGG | 0.477663 | 2_3:+53483756 | Msa0299060:intron |
| GCAAGTGTTCCAACTGCAAA+TGG | 0.482568 | 2_3:-53483800 | None:intergenic |
| GGGTTACACTAGACTGGTTG+TGG | 0.484518 | 2_3:+53486054 | Msa0299060:CDS |
| ACTGCAAAGTATGGTGATCA+AGG | 0.485522 | 2_3:+53485650 | Msa0299060:CDS |
| ATTGGTATATGTGCAATTAG+TGG | 0.486598 | 2_3:+53484045 | Msa0299060:CDS |
| ATGTTACAGTCTTTCCTATG+TGG | 0.489292 | 2_3:+53484605 | Msa0299060:intron |
| TCTGCGCTTTAGTGGTTCAT+CGG | 0.494479 | 2_3:+53486473 | Msa0299060:three_prime_UTR |
| TCAGCTGATCTTGCAGCTGG+TGG | 0.503591 | 2_3:+53485034 | Msa0299060:CDS |
| AAAGACATCCATTGCCAAGA+AGG | 0.509411 | 2_3:-53483295 | None:intergenic |
| TCTCAATAAGCACAAACTAC+AGG | 0.510107 | 2_3:+53486100 | Msa0299060:three_prime_UTR |
| GTTTCAGCTGATCTTGCAGC+TGG | 0.510600 | 2_3:+53485031 | Msa0299060:CDS |
| GTGTTCCAACTGCAAATGGC+TGG | 0.520973 | 2_3:-53483796 | None:intergenic |
| TGTAATTAACCTTAAAGCAG+AGG | 0.522589 | 2_3:-53484651 | None:intergenic |
| TTGCAGGGGTTACACTAGAC+TGG | 0.523837 | 2_3:+53486048 | Msa0299060:CDS |
| GTGTTTAGATTAATATTCAA+AGG | 0.528049 | 2_3:+53486530 | Msa0299060:three_prime_UTR |
| ATTTCAAGAATTTCAAGAGT+GGG | 0.530371 | 2_3:-53485559 | None:intergenic |
| GATTTAGCAACATCTGGTAA+AGG | 0.531613 | 2_3:+53484006 | Msa0299060:CDS |
| CAAACATGAACACGCCAAGA+AGG | 0.542626 | 2_3:-53482331 | None:intergenic |
| ACATCTGGTAAAGGAGGACT+TGG | 0.542893 | 2_3:+53484015 | Msa0299060:CDS |
| ACAAACAGTGAGGTAACCAT+TGG | 0.544603 | 2_3:-53485708 | None:intergenic |
| TTTGCAGTGAAATAAAATGC+TGG | 0.546823 | 2_3:-53485635 | None:intergenic |
| TGTCTTTCTCAGCACTTCTG+TGG | 0.546855 | 2_3:+53482352 | Msa0299060:five_prime_UTR |
| GCATAAACCTCTAGACGTGT+TGG | 0.547583 | 2_3:-53483152 | None:intergenic |
| GTATAATAGAGATTAGTTCA+AGG | 0.548918 | 2_3:-53482377 | None:intergenic |
| GTTGCAGATGCTCATGTTCA+AGG | 0.549362 | 2_3:+53484078 | Msa0299060:CDS |
| TGTGGTTGATAGGCAAAGGT+TGG | 0.549746 | 2_3:+53486072 | Msa0299060:CDS |
| CAAAGTATGGTGATCAAGGT+TGG | 0.550801 | 2_3:+53485654 | Msa0299060:CDS |
| GCATTTGATAATTCTAAGGA+TGG | 0.554074 | 2_3:+53484680 | Msa0299060:CDS |
| TCATTCTTGGGGCTATCCAA+TGG | 0.554884 | 2_3:+53485692 | Msa0299060:CDS |
| GGATTTCTGTCTGAAGATAC+CGG | 0.555158 | 2_3:+53485283 | Msa0299060:CDS |
| TGCACACAAACAAGAGAGGA+AGG | 0.556796 | 2_3:+53485177 | Msa0299060:CDS |
| TACAGGAATAGTTGTGATTG+AGG | 0.557006 | 2_3:+53486117 | Msa0299060:three_prime_UTR |
| TGAACACGCCAAGAAGGAAG+AGG | 0.564741 | 2_3:-53482325 | None:intergenic |
| ACAAGAGAGGAAGGGAAACA+AGG | 0.569413 | 2_3:+53485186 | Msa0299060:CDS |
| TGTTCCTAAACTATGTGCTC+CGG | 0.571762 | 2_3:-53485302 | None:intergenic |
| GTATACCAGCCATTTGCAGT+TGG | 0.574201 | 2_3:+53483791 | Msa0299060:CDS |
| TAAACCTCTAGACGTGTTGG+AGG | 0.581439 | 2_3:-53483149 | None:intergenic |
| AGCATCAGAAGGATCCAAAA+CGG | 0.581586 | 2_3:+53485009 | Msa0299060:CDS |
| ATGTGTCATTTACACAAGGA+AGG | 0.585751 | 2_3:+53486229 | Msa0299060:three_prime_UTR |
| TGTGTCATTTACACAAGGAA+GGG | 0.590923 | 2_3:+53486230 | Msa0299060:three_prime_UTR |
| GTGTCATTTACACAAGGAAG+GGG | 0.591185 | 2_3:+53486231 | Msa0299060:three_prime_UTR |
| CTCCATGGTAGATTTATAGG+AGG | 0.592906 | 2_3:+53486294 | Msa0299060:three_prime_UTR |
| TAAAAGGGTCTGTTTCTCCA+TGG | 0.596121 | 2_3:+53486279 | Msa0299060:three_prime_UTR |
| TTTATTATTACGCTTGGACA+TGG | 0.598221 | 2_3:-53486328 | None:intergenic |
| TAATGTTGACATCATTCTTG+GGG | 0.600627 | 2_3:+53485681 | Msa0299060:CDS |
| AATGAATTCTGGCTTCATGT+AGG | 0.600985 | 2_3:-53484121 | None:intergenic |
| TGAGCCTCCAACACGTCTAG+AGG | 0.604316 | 2_3:+53483145 | Msa0299060:CDS |
| AATTTCAAGAATTTCAAGAG+TGG | 0.605836 | 2_3:-53485560 | None:intergenic |
| GAACACGCCAAGAAGGAAGA+GGG | 0.611432 | 2_3:-53482324 | None:intergenic |
| TTAGCAACATCTGGTAAAGG+AGG | 0.617570 | 2_3:+53484009 | Msa0299060:CDS |
| CAGATGCTGCCAAACCACAT+AGG | 0.618573 | 2_3:-53484619 | None:intergenic |
| TAATTGCAATGTACAATGTG+TGG | 0.621011 | 2_3:+53485516 | Msa0299060:CDS |
| CGTACAAAAGCAGCATCAGA+AGG | 0.622959 | 2_3:+53484998 | Msa0299060:CDS |
| ATGAGCATCTGCAACTCCAA+AGG | 0.623544 | 2_3:-53484070 | None:intergenic |
| AATTGCAATGTACAATGTGT+GGG | 0.632930 | 2_3:+53485517 | Msa0299060:CDS |
| AATAATTCAAGGCAGAGCCA+TGG | 0.635029 | 2_3:+53483115 | Msa0299060:exon |
| TACCTCCTATAAATCTACCA+TGG | 0.635378 | 2_3:-53486296 | None:intergenic |
| TATCTTCAGACAGAAATCCT+GGG | 0.646675 | 2_3:-53485279 | None:intergenic |
| AAATGCATTGAAGTATGGTG+AGG | 0.655656 | 2_3:+53486394 | Msa0299060:three_prime_UTR |
| TGGAGGCTCAATGTTGACCA+TGG | 0.657247 | 2_3:-53483132 | None:intergenic |
| ACAAGTGTAAGCACCCTGGA+GGG | 0.662948 | 2_3:-53483770 | None:intergenic |
| GTTATGACATCAGCACCCAA+AGG | 0.663060 | 2_3:+53485731 | Msa0299060:CDS |
| GTATACAAGTGTAAGCACCC+TGG | 0.665189 | 2_3:-53483774 | None:intergenic |
| TGGTTGTGGTTGATAGGCAA+AGG | 0.669026 | 2_3:+53486068 | Msa0299060:CDS |
| GCACACAAACAAGAGAGGAA+GGG | 0.670991 | 2_3:+53485178 | Msa0299060:CDS |
| ATCATGCACACAAACAAGAG+AGG | 0.673529 | 2_3:+53485173 | Msa0299060:CDS |
| GAGCACATAGTTTAGGAACA+TGG | 0.674637 | 2_3:+53485305 | Msa0299060:CDS |
| TACAAGTGTAAGCACCCTGG+AGG | 0.676424 | 2_3:-53483771 | None:intergenic |
| GTGTATGTGTCATTTACACA+AGG | 0.691380 | 2_3:+53486225 | Msa0299060:three_prime_UTR |
| GCAGAATTATCATCCCTCCA+GGG | 0.704317 | 2_3:+53483757 | Msa0299060:intron |
| GCAGATGCTCATGTTCAAGG+TGG | 0.722859 | 2_3:+53484081 | Msa0299060:CDS |
| ATGTCATAACACAAACAGTG+AGG | 0.741156 | 2_3:-53485718 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATTTTTTCTTTTTGA+GGG | - | chr2_3:53482991-53483010 | None:intergenic | 10.0% |
| !!! | ATATATATTTTTTCTTTTTG+AGG | - | chr2_3:53482992-53483011 | None:intergenic | 10.0% |
| !!! | ATATTTTTAAAATAAAAGTC+TGG | - | chr2_3:53483446-53483465 | None:intergenic | 10.0% |
| !!! | ATTAAAATTATTAGCTTTTT+AGG | - | chr2_3:53484375-53484394 | None:intergenic | 10.0% |
| !!! | TTTATGTTTTAATTTATTGT+AGG | + | chr2_3:53485968-53485987 | Msa0299060:intron | 10.0% |
| !!! | TTATGTTTTAATTTATTGTA+GGG | + | chr2_3:53485969-53485988 | Msa0299060:intron | 10.0% |
| !!! | CAATTTTTTTAACAAATAAA+AGG | + | chr2_3:53486263-53486282 | Msa0299060:three_prime_UTR | 10.0% |
| !! | ATAACAATTAAATTACGTAA+AGG | - | chr2_3:53482449-53482468 | None:intergenic | 15.0% |
| !! | TAATAGAAATTAAAACTTCT+GGG | - | chr2_3:53482598-53482617 | None:intergenic | 15.0% |
| !! | TTAATAGAAATTAAAACTTC+TGG | - | chr2_3:53482599-53482618 | None:intergenic | 15.0% |
| !!! | GAAGTTTTAATTTCTATTAA+TGG | + | chr2_3:53482599-53482618 | Msa0299060:intron | 15.0% |
| !! | TATATGATATCAAAAAATTG+TGG | - | chr2_3:53482744-53482763 | None:intergenic | 15.0% |
| !! | TACTTATAAATCAACAAAAA+TGG | - | chr2_3:53482793-53482812 | None:intergenic | 15.0% |
| !! | TACATGCATTTATAATAATT+TGG | - | chr2_3:53482905-53482924 | None:intergenic | 15.0% |
| !!! | ATATATATTTCTAGTTATGT+TGG | + | chr2_3:53483006-53483025 | Msa0299060:intron | 15.0% |
| !!! | TTTCAATTTTTTGTTGTTAT+TGG | + | chr2_3:53483234-53483253 | Msa0299060:intron | 15.0% |
| !!! | GCTAATAATTTTAATTTCTA+TGG | + | chr2_3:53484380-53484399 | Msa0299060:intron | 15.0% |
| !!! | AATAATTTTAATTTCTATGG+TGG | + | chr2_3:53484383-53484402 | Msa0299060:intron | 15.0% |
| !!! | ATTAGATGAAATTTTGATTA+TGG | - | chr2_3:53484759-53484778 | None:intergenic | 15.0% |
| !! | GAAATTATTATCACATTATA+AGG | - | chr2_3:53485136-53485155 | None:intergenic | 15.0% |
| !! | AAAATTACCAAAGATTTAAA+AGG | - | chr2_3:53485349-53485368 | None:intergenic | 15.0% |
| !! | TATTATAGTAGTGTTTAATT+TGG | + | chr2_3:53485778-53485797 | Msa0299060:intron | 15.0% |
| !! | CATAAATATTAATGAGAATT+TGG | - | chr2_3:53485954-53485973 | None:intergenic | 15.0% |
| !! | TAAAAACGAAAAATAGAAAT+TGG | + | chr2_3:53486149-53486168 | Msa0299060:three_prime_UTR | 15.0% |
| !!! | TTTTTTTTTATTATTACGCT+TGG | - | chr2_3:53486337-53486356 | None:intergenic | 15.0% |
| !! | AAGCGTAATAATAAAAAAAA+AGG | + | chr2_3:53486336-53486355 | Msa0299060:three_prime_UTR | 15.0% |
| !! | ATTTCTATGTAATTTCAAAA+TGG | + | chr2_3:53486425-53486444 | Msa0299060:three_prime_UTR | 15.0% |
| !! | AAGTATATAACCTCAATTTA+AGG | - | chr2_3:53483070-53483089 | None:intergenic | 20.0% |
| !! | GATTGAAAAAGAATAATTCA+AGG | + | chr2_3:53483104-53483123 | Msa0299060:five_prime_UTR | 20.0% |
| !! | AAAATATTTCTTACAAACCA+AGG | + | chr2_3:53483459-53483478 | Msa0299060:intron | 20.0% |
| !!! | TTTTTTCATAACCACTTTTT+TGG | + | chr2_3:53483886-53483905 | Msa0299060:intron | 20.0% |
| !! | ACAATTAGTTGAATAGATAA+AGG | - | chr2_3:53483926-53483945 | None:intergenic | 20.0% |
| !! | TCCAATAAATTTAATGTAGT+TGG | + | chr2_3:53483984-53484003 | Msa0299060:intron | 20.0% |
| !! | TCCAACTACATTAAATTTAT+TGG | - | chr2_3:53483988-53484007 | None:intergenic | 20.0% |
| !! | ATCAAACATAAACGAAATTA+TGG | - | chr2_3:53484258-53484277 | None:intergenic | 20.0% |
| !! | TTTATGTTTGATTCTATCTT+TGG | + | chr2_3:53484266-53484285 | Msa0299060:intron | 20.0% |
| !! | AAACCAAACATAACAATTTA+TGG | - | chr2_3:53484313-53484332 | None:intergenic | 20.0% |
| !!! | GATTTTTATCGATTTATGTT+AGG | - | chr2_3:53484464-53484483 | None:intergenic | 20.0% |
| !!! | ATTTTACGTTCAATTAATTC+AGG | + | chr2_3:53484515-53484534 | Msa0299060:intron | 20.0% |
| !! | CTAAATAGTATATAGAGTAA+TGG | - | chr2_3:53484852-53484871 | None:intergenic | 20.0% |
| !!! | TATTTCACAATTGGTATTTT+AGG | - | chr2_3:53484974-53484993 | None:intergenic | 20.0% |
| !!! | AGTTGTGCTTATAATTTTTT+AGG | + | chr2_3:53485480-53485499 | Msa0299060:intron | 20.0% |
| !!! | TATTTATGCTTTAAGGATAT+TGG | - | chr2_3:53485907-53485926 | None:intergenic | 20.0% |
| !! | TTTGGATTTCATATAGTATA+GGG | - | chr2_3:53485936-53485955 | None:intergenic | 20.0% |
| !! | ATTTGGATTTCATATAGTAT+AGG | - | chr2_3:53485937-53485956 | None:intergenic | 20.0% |
| !!! | CTATTTTTAGAGATATGATA+TGG | + | chr2_3:53486182-53486201 | Msa0299060:three_prime_UTR | 20.0% |
| !! | GTATAATAGAGATTAGTTCA+AGG | - | chr2_3:53482380-53482399 | None:intergenic | 25.0% |
| ! | AAAGATAATTAGAGAAGAAG+AGG | - | chr2_3:53482424-53482443 | None:intergenic | 25.0% |
| ! | CGTAATTTAATTGTTATGCT+TGG | + | chr2_3:53482452-53482471 | Msa0299060:intron | 25.0% |
| ! | CATAAAAGGAAGAAAGATAT+TGG | + | chr2_3:53482515-53482534 | Msa0299060:intron | 25.0% |
| ! | ACTTTGATTCAAAATCTTGA+TGG | - | chr2_3:53482707-53482726 | None:intergenic | 25.0% |
| ! | AACTGTGTACGTAAATTTAA+TGG | + | chr2_3:53482943-53482962 | Msa0299060:intron | 25.0% |
| ! | ATATACTTTCTTGTAGAACT+TGG | + | chr2_3:53483082-53483101 | Msa0299060:intron | 25.0% |
| !! | TTGTTGTTATTGGTATTCAT+AGG | + | chr2_3:53483244-53483263 | Msa0299060:intron | 25.0% |
| !! | TGTTGTTATTGGTATTCATA+GGG | + | chr2_3:53483245-53483264 | Msa0299060:intron | 25.0% |
| ! | TTACTACATTTACTTGTTTC+CGG | + | chr2_3:53483349-53483368 | Msa0299060:CDS | 25.0% |
| ! | CTCATAAATCAATTACATAC+CGG | - | chr2_3:53483371-53483390 | None:intergenic | 25.0% |
| ! | ATCAAGAAGTAAGTAAAGTA+TGG | - | chr2_3:53483409-53483428 | None:intergenic | 25.0% |
| !! | TTGAACAATTTGTCATTTAG+TGG | - | chr2_3:53483511-53483530 | None:intergenic | 25.0% |
| !!! | AAATATTTTTTGTGAACCTC+TGG | - | chr2_3:53483631-53483650 | None:intergenic | 25.0% |
| ! | TGCTATATTGTCTTATAATG+AGG | + | chr2_3:53483820-53483839 | Msa0299060:CDS | 25.0% |
| !! | AAAAAAGAGTATATCCAAAC+AGG | - | chr2_3:53483871-53483890 | None:intergenic | 25.0% |
| ! | TACTATTAACACCAAAAAAG+TGG | - | chr2_3:53483900-53483919 | None:intergenic | 25.0% |
| ! | GAAAATCAAAATCATCCTAA+AGG | - | chr2_3:53483966-53483985 | None:intergenic | 25.0% |
| !! | TGGCAATTTAGAACTATAAT+CGG | - | chr2_3:53484160-53484179 | None:intergenic | 25.0% |
| ! | AACACAATTGCAATTATGAA+TGG | - | chr2_3:53484180-53484199 | None:intergenic | 25.0% |
| ! | TGACCATAAATTGTTATGTT+TGG | + | chr2_3:53484307-53484326 | Msa0299060:intron | 25.0% |
| ! | ATCTATGATACTTACATCTA+TGG | + | chr2_3:53484576-53484595 | Msa0299060:intron | 25.0% |
| ! | CAATAGCAACAAATAAGAAT+TGG | - | chr2_3:53484806-53484825 | None:intergenic | 25.0% |
| ! | GAAAGAAATAGTACTTCTTT+AGG | - | chr2_3:53485073-53485092 | None:intergenic | 25.0% |
| !! | GATAATAATTTCCCTTTTTC+AGG | + | chr2_3:53485144-53485163 | Msa0299060:intron | 25.0% |
| ! | ATAGTGTCAATGCATAAATT+AGG | - | chr2_3:53485252-53485271 | None:intergenic | 25.0% |
| ! | ATTTCAAGAATTTCAAGAGT+GGG | - | chr2_3:53485562-53485581 | None:intergenic | 25.0% |
| ! | AATTTCAAGAATTTCAAGAG+TGG | - | chr2_3:53485563-53485582 | None:intergenic | 25.0% |
| ! | ACTCTTGAAATTCTTGAAAT+TGG | + | chr2_3:53485562-53485581 | Msa0299060:CDS | 25.0% |
| !!! | TTTTATTTCACTGCAAAGTA+TGG | + | chr2_3:53485641-53485660 | Msa0299060:CDS | 25.0% |
| ! | ATAATGTTGACATCATTCTT+GGG | + | chr2_3:53485680-53485699 | Msa0299060:CDS | 25.0% |
| ! | ACTACTATAATATACTCTCA+AGG | - | chr2_3:53485770-53485789 | None:intergenic | 25.0% |
| ! | AGAGATATGATATGGTTAAA+TGG | + | chr2_3:53486190-53486209 | Msa0299060:three_prime_UTR | 25.0% |
| ! | TAATTTCAAAATGGCTGTAT+TGG | + | chr2_3:53486434-53486453 | Msa0299060:three_prime_UTR | 25.0% |
| ! | TCTATCTTCCTTTTTGTGTA+TGG | + | chr2_3:53482650-53482669 | Msa0299060:intron | 30.0% |
| TACATCTTGCAAATCAAGTA+TGG | - | chr2_3:53482683-53482702 | None:intergenic | 30.0% | |
| TCTAGAGGTTTATGCTTAAT+TGG | + | chr2_3:53483160-53483179 | Msa0299060:intron | 30.0% | |
| TTGAATTACACCAACATACA+AGG | - | chr2_3:53483677-53483696 | None:intergenic | 30.0% | |
| CAAAAGTCAATACTAGATTC+AGG | + | chr2_3:53483843-53483862 | Msa0299060:intron | 30.0% | |
| ACTTTGATTCCTTTACCTTT+AGG | + | chr2_3:53483948-53483967 | Msa0299060:intron | 30.0% | |
| CAAAATCATCCTAAAGGTAA+AGG | - | chr2_3:53483960-53483979 | None:intergenic | 30.0% | |
| ATTGGTATATGTGCAATTAG+TGG | + | chr2_3:53484045-53484064 | Msa0299060:CDS | 30.0% | |
| ATTCAATTTCGACAGATGTA+TGG | + | chr2_3:53484410-53484429 | Msa0299060:intron | 30.0% | |
| TGTAATTAACCTTAAAGCAG+AGG | - | chr2_3:53484654-53484673 | None:intergenic | 30.0% | |
| ! | AGCAGCATTTGATAATTCTA+AGG | + | chr2_3:53484676-53484695 | Msa0299060:CDS | 30.0% |
| ! | GCATTTGATAATTCTAAGGA+TGG | + | chr2_3:53484680-53484699 | Msa0299060:CDS | 30.0% |
| AAGCTCAAAGAATGTTGATA+TGG | - | chr2_3:53484921-53484940 | None:intergenic | 30.0% | |
| ! | GTACTTCTTTAGGTATTGTT+TGG | - | chr2_3:53485063-53485082 | None:intergenic | 30.0% |
| TTACCAAAGATTTAAAAGGC+AGG | - | chr2_3:53485345-53485364 | None:intergenic | 30.0% | |
| TTTATCTACAGCAATCCATT+AGG | - | chr2_3:53485425-53485444 | None:intergenic | 30.0% | |
| TAATTGCAATGTACAATGTG+TGG | + | chr2_3:53485516-53485535 | Msa0299060:CDS | 30.0% | |
| AATTGCAATGTACAATGTGT+GGG | + | chr2_3:53485517-53485536 | Msa0299060:CDS | 30.0% | |
| TTTGCAGTGAAATAAAATGC+TGG | - | chr2_3:53485638-53485657 | None:intergenic | 30.0% | |
| GATAATGTTGACATCATTCT+TGG | + | chr2_3:53485679-53485698 | Msa0299060:CDS | 30.0% | |
| TAATGTTGACATCATTCTTG+GGG | + | chr2_3:53485681-53485700 | Msa0299060:CDS | 30.0% | |
| !! | AGTAGTGTTTAATTTGGAAC+CGG | + | chr2_3:53485784-53485803 | Msa0299060:intron | 30.0% |
| !! | TTATGCTTTAAGGATATTGG+TGG | - | chr2_3:53485904-53485923 | None:intergenic | 30.0% |
| GATCTGGTATTTATGCTTTA+AGG | - | chr2_3:53485914-53485933 | None:intergenic | 30.0% | |
| TTTCATATAGTATAGGGATC+TGG | - | chr2_3:53485930-53485949 | None:intergenic | 30.0% | |
| TTTCTCCATGGTAGATTTAT+AGG | + | chr2_3:53486291-53486310 | Msa0299060:three_prime_UTR | 30.0% | |
| TTTATTATTACGCTTGGACA+TGG | - | chr2_3:53486331-53486350 | None:intergenic | 30.0% | |
| !!! | GCATTTTGTGTTAATTTGCT+TGG | - | chr2_3:53486380-53486399 | None:intergenic | 30.0% |
| ACACAAAATGCATTGAAGTA+TGG | + | chr2_3:53486389-53486408 | Msa0299060:three_prime_UTR | 30.0% | |
| GATAGAAGAGCAAAGACTTT+AGG | - | chr2_3:53482636-53482655 | None:intergenic | 35.0% | |
| GTGATAGACCATACACAAAA+AGG | - | chr2_3:53482661-53482680 | None:intergenic | 35.0% | |
| CAGATTGAAGCCTTAAATTG+AGG | + | chr2_3:53483057-53483076 | Msa0299060:intron | 35.0% | |
| GGGAAAATATGCTGCAATAT+TGG | + | chr2_3:53483265-53483284 | Msa0299060:intron | 35.0% | |
| ATATTGGTATGCTTCCTTCT+TGG | + | chr2_3:53483281-53483300 | Msa0299060:CDS | 35.0% | |
| ! | ATCTGAGTTTGATTTCTGAG+TGG | + | chr2_3:53483535-53483554 | Msa0299060:intron | 35.0% |
| TAGTTGGATTTAGCAACATC+TGG | + | chr2_3:53484000-53484019 | Msa0299060:intron | 35.0% | |
| GATTTAGCAACATCTGGTAA+AGG | + | chr2_3:53484006-53484025 | Msa0299060:CDS | 35.0% | |
| !! | AATGAATTCTGGCTTCATGT+AGG | - | chr2_3:53484124-53484143 | None:intergenic | 35.0% |
| TAAGCGTGAGTTTGATTATG+CGG | - | chr2_3:53484557-53484576 | None:intergenic | 35.0% | |
| ATGTTACAGTCTTTCCTATG+TGG | + | chr2_3:53484605-53484624 | Msa0299060:intron | 35.0% | |
| ! | TCTAAGGATGGTCTTAGAAA+AGG | + | chr2_3:53484692-53484711 | Msa0299060:CDS | 35.0% |
| GTACGGTAGTATTTCACAAT+TGG | - | chr2_3:53484983-53485002 | None:intergenic | 35.0% | |
| !!! | AATTTCCCTTTTTCAGGATG+AGG | + | chr2_3:53485150-53485169 | Msa0299060:intron | 35.0% |
| ATGATCCTCATCCTGAAAAA+GGG | - | chr2_3:53485158-53485177 | None:intergenic | 35.0% | |
| ! | TTGACACTATCTATTTTCCC+AGG | + | chr2_3:53485262-53485281 | Msa0299060:CDS | 35.0% |
| TATCTTCAGACAGAAATCCT+GGG | - | chr2_3:53485282-53485301 | None:intergenic | 35.0% | |
| ! | CTACCTGCCTTTTAAATCTT+TGG | + | chr2_3:53485339-53485358 | Msa0299060:intron | 35.0% |
| ! | TTTTACGAATCGAAACGACA+AGG | + | chr2_3:53485392-53485411 | Msa0299060:intron | 35.0% |
| TACAATGTGTGGGATCTAAT+AGG | + | chr2_3:53485527-53485546 | Msa0299060:CDS | 35.0% | |
| ATGTCATAACACAAACAGTG+AGG | - | chr2_3:53485721-53485740 | None:intergenic | 35.0% | |
| GGTCTTACCTTATAACCTTT+GGG | - | chr2_3:53485749-53485768 | None:intergenic | 35.0% | |
| AGGTCTTACCTTATAACCTT+TGG | - | chr2_3:53485750-53485769 | None:intergenic | 35.0% | |
| GATGGCTGTTTGATCAAAAT+CGG | + | chr2_3:53485846-53485865 | Msa0299060:intron | 35.0% | |
| TTGATCAAAATCGGATAGTC+TGG | + | chr2_3:53485855-53485874 | Msa0299060:intron | 35.0% | |
| !! | TTTCCCAAAGCATTTTGTTC+TGG | - | chr2_3:53485996-53486015 | None:intergenic | 35.0% |
| !! | AAATGCTTTGGGAAACTTGT+TGG | + | chr2_3:53486001-53486020 | Msa0299060:CDS | 35.0% |
| !! | TTGTTGGTGTTGTTTCTACT+TGG | + | chr2_3:53486017-53486036 | Msa0299060:CDS | 35.0% |
| !!! | TACTTGGAGGTATTTTTGCA+GGG | + | chr2_3:53486033-53486052 | Msa0299060:CDS | 35.0% |
| TCTCAATAAGCACAAACTAC+AGG | + | chr2_3:53486100-53486119 | Msa0299060:three_prime_UTR | 35.0% | |
| TACAGGAATAGTTGTGATTG+AGG | + | chr2_3:53486117-53486136 | Msa0299060:three_prime_UTR | 35.0% | |
| GGTTAAATGGCACAACAAAA+AGG | + | chr2_3:53486203-53486222 | Msa0299060:three_prime_UTR | 35.0% | |
| !! | GTGTATGTGTCATTTACACA+AGG | + | chr2_3:53486225-53486244 | Msa0299060:three_prime_UTR | 35.0% |
| !! | ATGTGTCATTTACACAAGGA+AGG | + | chr2_3:53486229-53486248 | Msa0299060:three_prime_UTR | 35.0% |
| !! | TGTGTCATTTACACAAGGAA+GGG | + | chr2_3:53486230-53486249 | Msa0299060:three_prime_UTR | 35.0% |
| TACCTCCTATAAATCTACCA+TGG | - | chr2_3:53486299-53486318 | None:intergenic | 35.0% | |
| AAATGCATTGAAGTATGGTG+AGG | + | chr2_3:53486394-53486413 | Msa0299060:three_prime_UTR | 35.0% | |
| ! | TTGAATTTTCTGCGCTTTAG+TGG | + | chr2_3:53486465-53486484 | Msa0299060:three_prime_UTR | 35.0% |
| GTACACTCGTGTGTCATAAA+AGG | + | chr2_3:53482501-53482520 | Msa0299060:intron | 40.0% | |
| ! | GAAGAGCAAAGACTTTAGGA+AGG | - | chr2_3:53482632-53482651 | None:intergenic | 40.0% |
| AATAATTCAAGGCAGAGCCA+TGG | + | chr2_3:53483115-53483134 | Msa0299060:exon | 40.0% | |
| AAAGACATCCATTGCCAAGA+AGG | - | chr2_3:53483298-53483317 | None:intergenic | 40.0% | |
| ! | GCAATGGATGTCTTTTCTCT+TGG | + | chr2_3:53483303-53483322 | Msa0299060:CDS | 40.0% |
| ACCAAGGAATTTGACTCAAG+TGG | + | chr2_3:53483475-53483494 | Msa0299060:intron | 40.0% | |
| ACCACTTGAGTCAAATTCCT+TGG | - | chr2_3:53483479-53483498 | None:intergenic | 40.0% | |
| ! | CAGTAATCTGGAGTTCAATC+GGG | - | chr2_3:53483589-53483608 | None:intergenic | 40.0% |
| ! | CCAGTAATCTGGAGTTCAAT+CGG | - | chr2_3:53483590-53483609 | None:intergenic | 40.0% |
| CGATTGAACTCCAGATTACT+GGG | + | chr2_3:53483588-53483607 | Msa0299060:intron | 40.0% | |
| GAAAATGAGTCCCAGTAATC+TGG | - | chr2_3:53483601-53483620 | None:intergenic | 40.0% | |
| ATGTGCTTCTCCTTGTATGT+TGG | + | chr2_3:53483664-53483683 | Msa0299060:intron | 40.0% | |
| AGGGATGATAATTCTGCACA+CGG | - | chr2_3:53483754-53483773 | None:intergenic | 40.0% | |
| ACTAGATTCAGGAACCTGTT+TGG | + | chr2_3:53483854-53483873 | Msa0299060:intron | 40.0% | |
| TTAGCAACATCTGGTAAAGG+AGG | + | chr2_3:53484009-53484028 | Msa0299060:CDS | 40.0% | |
| ! | GGAGGACTTGGAACTTTTAT+TGG | + | chr2_3:53484027-53484046 | Msa0299060:CDS | 40.0% |
| CATGTTCAAGGTGGAATGAT+TGG | + | chr2_3:53484090-53484109 | Msa0299060:CDS | 40.0% | |
| CATGAAGCCAGAATTCATTC+AGG | + | chr2_3:53484125-53484144 | Msa0299060:CDS | 40.0% | |
| TAGCTGACCTGAATGAATTC+TGG | - | chr2_3:53484135-53484154 | None:intergenic | 40.0% | |
| ! | CTGCATTTTACGCGATATCA+AGG | + | chr2_3:53484207-53484226 | Msa0299060:intron | 40.0% |
| ACAGTCTTTCCTATGTGGTT+TGG | + | chr2_3:53484610-53484629 | Msa0299060:intron | 40.0% | |
| GTGCATTAACCTCTGCTTTA+AGG | + | chr2_3:53484642-53484661 | Msa0299060:CDS | 40.0% | |
| !!! | CTTCTGATGCTGCTTTTGTA+CGG | - | chr2_3:53485000-53485019 | None:intergenic | 40.0% |
| AGCATCAGAAGGATCCAAAA+CGG | + | chr2_3:53485009-53485028 | Msa0299060:CDS | 40.0% | |
| ! | AAGATCAGCTGAAACCGTTT+TGG | - | chr2_3:53485026-53485045 | None:intergenic | 40.0% |
| CATGATCCTCATCCTGAAAA+AGG | - | chr2_3:53485159-53485178 | None:intergenic | 40.0% | |
| ATCATGCACACAAACAAGAG+AGG | + | chr2_3:53485173-53485192 | Msa0299060:CDS | 40.0% | |
| GTATCTTCAGACAGAAATCC+TGG | - | chr2_3:53485283-53485302 | None:intergenic | 40.0% | |
| GGATTTCTGTCTGAAGATAC+CGG | + | chr2_3:53485283-53485302 | Msa0299060:CDS | 40.0% | |
| TGTTCCTAAACTATGTGCTC+CGG | - | chr2_3:53485305-53485324 | None:intergenic | 40.0% | |
| GAGCACATAGTTTAGGAACA+TGG | + | chr2_3:53485305-53485324 | Msa0299060:CDS | 40.0% | |
| ACTGCAAAGTATGGTGATCA+AGG | + | chr2_3:53485650-53485669 | Msa0299060:CDS | 40.0% | |
| CAAAGTATGGTGATCAAGGT+TGG | + | chr2_3:53485654-53485673 | Msa0299060:CDS | 40.0% | |
| ACAAACAGTGAGGTAACCAT+TGG | - | chr2_3:53485711-53485730 | None:intergenic | 40.0% | |
| ATCAGCACCCAAAGGTTATA+AGG | + | chr2_3:53485739-53485758 | Msa0299060:CDS | 40.0% | |
| ATATCTCGAATGCGTGAATG+CGG | - | chr2_3:53485825-53485844 | None:intergenic | 40.0% | |
| GTCGTTCAATCAAAACCGAA+CGG | - | chr2_3:53485882-53485901 | None:intergenic | 40.0% | |
| GGTCCAGAACAAAATGCTTT+GGG | + | chr2_3:53485990-53486009 | Msa0299060:CDS | 40.0% | |
| !! | TTGGTGTTGTTTCTACTTGG+AGG | + | chr2_3:53486020-53486039 | Msa0299060:CDS | 40.0% |
| !!! | CTACTTGGAGGTATTTTTGC+AGG | + | chr2_3:53486032-53486051 | Msa0299060:CDS | 40.0% |
| !!! | ACTTGGAGGTATTTTTGCAG+GGG | + | chr2_3:53486034-53486053 | Msa0299060:CDS | 40.0% |
| !! | GTGTCATTTACACAAGGAAG+GGG | + | chr2_3:53486231-53486250 | Msa0299060:three_prime_UTR | 40.0% |
| ! | TAAAAGGGTCTGTTTCTCCA+TGG | + | chr2_3:53486279-53486298 | Msa0299060:three_prime_UTR | 40.0% |
| CTCCATGGTAGATTTATAGG+AGG | + | chr2_3:53486294-53486313 | Msa0299060:three_prime_UTR | 40.0% | |
| CAAACATGAACACGCCAAGA+AGG | - | chr2_3:53482334-53482353 | None:intergenic | 45.0% | |
| TGTCTTTCTCAGCACTTCTG+TGG | + | chr2_3:53482352-53482371 | Msa0299060:five_prime_UTR | 45.0% | |
| TAAACCTCTAGACGTGTTGG+AGG | - | chr2_3:53483152-53483171 | None:intergenic | 45.0% | |
| GCATAAACCTCTAGACGTGT+TGG | - | chr2_3:53483155-53483174 | None:intergenic | 45.0% | |
| GTATGCTTCCTTCTTGGCAA+TGG | + | chr2_3:53483287-53483306 | Msa0299060:CDS | 45.0% | |
| CCGATTGAACTCCAGATTAC+TGG | + | chr2_3:53483587-53483606 | Msa0299060:intron | 45.0% | |
| ! | CTCATTTTCCAGAGAACCAG+AGG | + | chr2_3:53483612-53483631 | Msa0299060:intron | 45.0% |
| !! | TTTGTGAACCTCTGGTTCTC+TGG | - | chr2_3:53483623-53483642 | None:intergenic | 45.0% |
| TGCAGAATTATCATCCCTCC+AGG | + | chr2_3:53483756-53483775 | Msa0299060:intron | 45.0% | |
| GCAGAATTATCATCCCTCCA+GGG | + | chr2_3:53483757-53483776 | Msa0299060:intron | 45.0% | |
| GTATACAAGTGTAAGCACCC+TGG | - | chr2_3:53483777-53483796 | None:intergenic | 45.0% | |
| GTATACCAGCCATTTGCAGT+TGG | + | chr2_3:53483791-53483810 | Msa0299060:CDS | 45.0% | |
| GCAAGTGTTCCAACTGCAAA+TGG | - | chr2_3:53483803-53483822 | None:intergenic | 45.0% | |
| ACATCTGGTAAAGGAGGACT+TGG | + | chr2_3:53484015-53484034 | Msa0299060:CDS | 45.0% | |
| TGTGCAATTAGTGGTGCCTT+TGG | + | chr2_3:53484054-53484073 | Msa0299060:CDS | 45.0% | |
| ATGAGCATCTGCAACTCCAA+AGG | - | chr2_3:53484073-53484092 | None:intergenic | 45.0% | |
| GTTGCAGATGCTCATGTTCA+AGG | + | chr2_3:53484078-53484097 | Msa0299060:CDS | 45.0% | |
| CGTACAAAAGCAGCATCAGA+AGG | + | chr2_3:53484998-53485017 | Msa0299060:CDS | 45.0% | |
| TGCACACAAACAAGAGAGGA+AGG | + | chr2_3:53485177-53485196 | Msa0299060:CDS | 45.0% | |
| GCACACAAACAAGAGAGGAA+GGG | + | chr2_3:53485178-53485197 | Msa0299060:CDS | 45.0% | |
| ACAAGAGAGGAAGGGAAACA+AGG | + | chr2_3:53485186-53485205 | Msa0299060:CDS | 45.0% | |
| GATACCGGAGCACATAGTTT+AGG | + | chr2_3:53485298-53485317 | Msa0299060:CDS | 45.0% | |
| TACAGCAATCCATTAGGCGT+TGG | - | chr2_3:53485419-53485438 | None:intergenic | 45.0% | |
| TCATTCTTGGGGCTATCCAA+TGG | + | chr2_3:53485692-53485711 | Msa0299060:CDS | 45.0% | |
| GTTATGACATCAGCACCCAA+AGG | + | chr2_3:53485731-53485750 | Msa0299060:CDS | 45.0% | |
| TATCTCGAATGCGTGAATGC+GGG | - | chr2_3:53485824-53485843 | None:intergenic | 45.0% | |
| TCACGCATTCGAGATATCGA+TGG | + | chr2_3:53485828-53485847 | Msa0299060:intron | 45.0% | |
| GGGTCCAGAACAAAATGCTT+TGG | + | chr2_3:53485989-53486008 | Msa0299060:intron | 45.0% | |
| ! | CTAGACTGGTTGTGGTTGAT+AGG | + | chr2_3:53486062-53486081 | Msa0299060:CDS | 45.0% |
| !! | TGGTTGTGGTTGATAGGCAA+AGG | + | chr2_3:53486068-53486087 | Msa0299060:CDS | 45.0% |
| !! | TGTGGTTGATAGGCAAAGGT+TGG | + | chr2_3:53486072-53486091 | Msa0299060:CDS | 45.0% |
| TCTGCGCTTTAGTGGTTCAT+CGG | + | chr2_3:53486473-53486492 | Msa0299060:three_prime_UTR | 45.0% | |
| !!! | AATTTGAAATTAAAATAAAA+TGG | - | chr2_3:53485373-53485392 | None:intergenic | 5.0% |
| !!! | AATTTTTTTAACAAATAAAA+GGG | + | chr2_3:53486264-53486283 | Msa0299060:three_prime_UTR | 5.0% |
| GACTCTTCCCTCTTCCTTCT+TGG | + | chr2_3:53482317-53482336 | Msa0299060:five_prime_UTR | 50.0% | |
| GAACACGCCAAGAAGGAAGA+GGG | - | chr2_3:53482327-53482346 | None:intergenic | 50.0% | |
| TGAACACGCCAAGAAGGAAG+AGG | - | chr2_3:53482328-53482347 | None:intergenic | 50.0% | |
| TGGAGGCTCAATGTTGACCA+TGG | - | chr2_3:53483135-53483154 | None:intergenic | 50.0% | |
| ACAAGTGTAAGCACCCTGGA+GGG | - | chr2_3:53483773-53483792 | None:intergenic | 50.0% | |
| TACAAGTGTAAGCACCCTGG+AGG | - | chr2_3:53483774-53483793 | None:intergenic | 50.0% | |
| GTGTTCCAACTGCAAATGGC+TGG | - | chr2_3:53483799-53483818 | None:intergenic | 50.0% | |
| GCAGATGCTCATGTTCAAGG+TGG | + | chr2_3:53484081-53484100 | Msa0299060:CDS | 50.0% | |
| CAGATGCTGCCAAACCACAT+AGG | - | chr2_3:53484622-53484641 | None:intergenic | 50.0% | |
| ! | CTATGTGGTTTGGCAGCATC+TGG | + | chr2_3:53484620-53484639 | Msa0299060:CDS | 50.0% |
| GTTTCAGCTGATCTTGCAGC+TGG | + | chr2_3:53485031-53485050 | Msa0299060:CDS | 50.0% | |
| ! | TTAATTTGGAACCGGCTCCC+TGG | + | chr2_3:53485792-53485811 | Msa0299060:intron | 50.0% |
| ! | TAATTTGGAACCGGCTCCCT+GGG | + | chr2_3:53485793-53485812 | Msa0299060:intron | 50.0% |
| ATCGGATAGTCTGGACCGTT+CGG | + | chr2_3:53485864-53485883 | Msa0299060:intron | 50.0% | |
| TTGCAGGGGTTACACTAGAC+TGG | + | chr2_3:53486048-53486067 | Msa0299060:CDS | 50.0% | |
| ! | GGGTTACACTAGACTGGTTG+TGG | + | chr2_3:53486054-53486073 | Msa0299060:CDS | 50.0% |
| TGAGCCTCCAACACGTCTAG+AGG | + | chr2_3:53483145-53483164 | Msa0299060:CDS | 55.0% | |
| TCAGCTGATCTTGCAGCTGG+TGG | + | chr2_3:53485034-53485053 | Msa0299060:CDS | 55.0% | |
| CGACAAGGACCAACGCCTAA+TGG | + | chr2_3:53485407-53485426 | Msa0299060:intron | 55.0% | |
| ! | AATTTGGAACCGGCTCCCTG+GGG | + | chr2_3:53485794-53485813 | Msa0299060:intron | 55.0% |
| GTGAATGCGGGAAATCCCCA+GGG | - | chr2_3:53485812-53485831 | None:intergenic | 55.0% | |
| CGTGAATGCGGGAAATCCCC+AGG | - | chr2_3:53485813-53485832 | None:intergenic | 60.0% | |
| GCGGGAAATCCCCAGGGAGC+CGG | - | chr2_3:53485806-53485825 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 53482262 | 53486552 | 53482262 | ID=Msa0299060;Name=Msa0299060 |
| chr2_3 | mRNA | 53482262 | 53486552 | 53482262 | ID=Msa0299060-mRNA-1;Parent=Msa0299060;Name=Msa0299060-mRNA-1;_AED=0.14;_eAED=0.14;_QI=181|0.88|0.9|1|0.88|0.8|10|455|391 |
| chr2_3 | exon | 53482262 | 53482406 | 53482262 | ID=Msa0299060-mRNA-1:exon:17160;Parent=Msa0299060-mRNA-1 |
| chr2_3 | exon | 53483098 | 53483166 | 53483098 | ID=Msa0299060-mRNA-1:exon:17161;Parent=Msa0299060-mRNA-1 |
| chr2_3 | exon | 53483266 | 53483370 | 53483266 | ID=Msa0299060-mRNA-1:exon:17162;Parent=Msa0299060-mRNA-1 |
| chr2_3 | exon | 53483761 | 53483847 | 53483761 | ID=Msa0299060-mRNA-1:exon:17163;Parent=Msa0299060-mRNA-1 |
| chr2_3 | exon | 53484003 | 53484146 | 53484003 | ID=Msa0299060-mRNA-1:exon:17164;Parent=Msa0299060-mRNA-1 |
| chr2_3 | exon | 53484614 | 53484719 | 53484614 | ID=Msa0299060-mRNA-1:exon:17165;Parent=Msa0299060-mRNA-1 |
| chr2_3 | exon | 53484906 | 53485078 | 53484906 | ID=Msa0299060-mRNA-1:exon:17166;Parent=Msa0299060-mRNA-1 |
| chr2_3 | exon | 53485166 | 53485326 | 53485166 | ID=Msa0299060-mRNA-1:exon:17167;Parent=Msa0299060-mRNA-1 |
| chr2_3 | exon | 53485502 | 53485760 | 53485502 | ID=Msa0299060-mRNA-1:exon:17168;Parent=Msa0299060-mRNA-1 |
| chr2_3 | exon | 53485990 | 53486552 | 53485990 | ID=Msa0299060-mRNA-1:exon:17169;Parent=Msa0299060-mRNA-1 |
| chr2_3 | five_prime_UTR | 53482262 | 53482406 | 53482262 | ID=Msa0299060-mRNA-1:five_prime_utr;Parent=Msa0299060-mRNA-1 |
| chr2_3 | five_prime_UTR | 53483098 | 53483133 | 53483098 | ID=Msa0299060-mRNA-1:five_prime_utr;Parent=Msa0299060-mRNA-1 |
| chr2_3 | CDS | 53483134 | 53483166 | 53483134 | ID=Msa0299060-mRNA-1:cds;Parent=Msa0299060-mRNA-1 |
| chr2_3 | CDS | 53483266 | 53483370 | 53483266 | ID=Msa0299060-mRNA-1:cds;Parent=Msa0299060-mRNA-1 |
| chr2_3 | CDS | 53483761 | 53483847 | 53483761 | ID=Msa0299060-mRNA-1:cds;Parent=Msa0299060-mRNA-1 |
| chr2_3 | CDS | 53484003 | 53484146 | 53484003 | ID=Msa0299060-mRNA-1:cds;Parent=Msa0299060-mRNA-1 |
| chr2_3 | CDS | 53484614 | 53484719 | 53484614 | ID=Msa0299060-mRNA-1:cds;Parent=Msa0299060-mRNA-1 |
| chr2_3 | CDS | 53484906 | 53485078 | 53484906 | ID=Msa0299060-mRNA-1:cds;Parent=Msa0299060-mRNA-1 |
| chr2_3 | CDS | 53485166 | 53485326 | 53485166 | ID=Msa0299060-mRNA-1:cds;Parent=Msa0299060-mRNA-1 |
| chr2_3 | CDS | 53485502 | 53485760 | 53485502 | ID=Msa0299060-mRNA-1:cds;Parent=Msa0299060-mRNA-1 |
| chr2_3 | CDS | 53485990 | 53486097 | 53485990 | ID=Msa0299060-mRNA-1:cds;Parent=Msa0299060-mRNA-1 |
| chr2_3 | three_prime_UTR | 53486098 | 53486552 | 53486098 | ID=Msa0299060-mRNA-1:three_prime_utr;Parent=Msa0299060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
