AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0363810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363810 MtrunA17_Chr3g0102691 96.939 98 3 0 1 98 1 98 8.12e-65 199
Msa0363810 MtrunA17_Chr4g0075941 60.000 100 39 1 1 99 1 100 1.43e-39 129
Msa0363810 MtrunA17_Chr4g0076441 60.000 100 39 1 1 99 1 100 6.72e-38 129
Msa0363810 MtrunA17_Chr2g0290661 60.606 99 38 1 2 99 7 105 4.36e-37 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363810 AT1G55840.1 61.616 99 37 1 2 99 7 105 1.69e-41 139
Msa0363810 AT5G47730.4 60.606 99 38 1 2 99 7 105 1.31e-36 126
Msa0363810 AT5G47730.1 60.606 99 38 1 2 99 7 105 1.31e-36 126
Msa0363810 AT1G55840.2 67.532 77 24 1 24 99 2 78 1.40e-33 117
Msa0363810 AT5G47730.2 70.000 50 14 1 51 99 1 50 9.01e-19 78.6
Msa0363810 AT5G47730.3 70.000 50 14 1 51 99 1 50 9.01e-19 78.6

Find 25 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAGTCTTTGATGGAAAA+TGG 0.286433 3_1:-56443412 Msa0363810:intron
TAAGCAGTTGCAGTCTTTGA+TGG 0.306038 3_1:-56443419 Msa0363810:CDS
ATGAATAAATAGAGTAATAT+AGG 0.332323 3_1:+56443734 None:intergenic
GCAACAGAAGATTGCATTCA+AGG 0.343791 3_1:-56443289 Msa0363810:intron
GCTTCCTATGTTGAAACTAT+AGG 0.401617 3_1:+56443650 None:intergenic
TTGTACAAATCCGCAGGAAT+TGG 0.405764 3_1:+56442114 None:intergenic
GTGCGAGATTCTCAACTCAT+AGG 0.475225 3_1:-56442087 Msa0363810:CDS
GGGATACCCTACTGAAATGT+TGG 0.504243 3_1:-56442552 Msa0363810:CDS
TCTCAACTCATAGGAATGTC+CGG 0.506270 3_1:-56442078 Msa0363810:CDS
TATATTTCAGAATCTGCACC+AGG 0.513856 3_1:-56442573 Msa0363810:intron
ACATTTCAGTAGGGTATCCC+TGG 0.537126 3_1:+56442555 None:intergenic
GGCACGATTTCTCAAAGCTA+GGG 0.540499 3_1:-56442531 Msa0363810:CDS
AATCGTGCCAACATTTCAGT+AGG 0.554479 3_1:+56442545 None:intergenic
TGATTGTTTACATTGGAGAG+TGG 0.555854 3_1:-56442374 Msa0363810:CDS
GATTTCTCAAAGCTAGGGAC+GGG 0.571459 3_1:-56442526 Msa0363810:CDS
TGGCACGATTTCTCAAAGCT+AGG 0.581370 3_1:-56442532 Msa0363810:CDS
AATGTCCGGTTACACAAAAG+AGG 0.582946 3_1:-56442064 Msa0363810:CDS
AGTTAATTGATTGTTTACAT+TGG 0.588126 3_1:-56442381 Msa0363810:CDS
CGATTTCTCAAAGCTAGGGA+CGG 0.592978 3_1:-56442527 Msa0363810:CDS
ACAGGTTTGTACAAATCCGC+AGG 0.597594 3_1:+56442108 None:intergenic
ATGAGTTGAGAATCTCGCAC+AGG 0.608198 3_1:+56442090 None:intergenic
ACATCCTATAGTTTCAACAT+AGG 0.611986 3_1:-56443654 Msa0363810:five_prime_UTR
ATCGTGCCAACATTTCAGTA+GGG 0.638800 3_1:+56442546 None:intergenic
ATAGCAGAAACCAATTCCTG+CGG 0.702765 3_1:-56442124 Msa0363810:intron
ATATTTCAGAATCTGCACCA+GGG 0.705098 3_1:-56442572 Msa0363810:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAAATTTCTTTATGA+AGG - chr3_1:56442620-56442639 Msa0363810:intron 10.0%
!!! ATTTTTAAATTTCTTTATGA+AGG - chr3_1:56442620-56442639 Msa0363810:intron 10.0%
!! ATGAATAAATAGAGTAATAT+AGG + chr3_1:56442071-56442090 None:intergenic 15.0%
!!! GAAAAAGATTAAATTTTTAC+AGG + chr3_1:56442288-56442307 None:intergenic 15.0%
!! AAAAATTGAAATTTGCAAAT+GGG + chr3_1:56442336-56442355 None:intergenic 15.0%
!! AAAAAATTGAAATTTGCAAA+TGG + chr3_1:56442337-56442356 None:intergenic 15.0%
!!! AAGTTGTTAAGAATTTTTTT+AGG - chr3_1:56442701-56442720 Msa0363810:intron 15.0%
!!! AGTTGTTAAGAATTTTTTTA+GGG - chr3_1:56442702-56442721 Msa0363810:intron 15.0%
!!! ATTCTGAAATATAAAATGAA+AGG + chr3_1:56443222-56443241 None:intergenic 15.0%
!! ATGAATAAATAGAGTAATAT+AGG + chr3_1:56442071-56442090 None:intergenic 15.0%
!!! GAAAAAGATTAAATTTTTAC+AGG + chr3_1:56442288-56442307 None:intergenic 15.0%
!! AAAAATTGAAATTTGCAAAT+GGG + chr3_1:56442336-56442355 None:intergenic 15.0%
!! AAAAAATTGAAATTTGCAAA+TGG + chr3_1:56442337-56442356 None:intergenic 15.0%
!!! AAGTTGTTAAGAATTTTTTT+AGG - chr3_1:56442701-56442720 Msa0363810:intron 15.0%
!!! AGTTGTTAAGAATTTTTTTA+GGG - chr3_1:56442702-56442721 Msa0363810:intron 15.0%
!!! ATTCTGAAATATAAAATGAA+AGG + chr3_1:56443222-56443241 None:intergenic 15.0%
!! GTAAAGAAAGAAAAATTAGT+GGG + chr3_1:56442111-56442130 None:intergenic 20.0%
!! TGTAAAGAAAGAAAAATTAG+TGG + chr3_1:56442112-56442131 None:intergenic 20.0%
!!! TTTGTTTTGTTTTTCACATA+TGG + chr3_1:56442205-56442224 None:intergenic 20.0%
!! GTAAAATTGATCTTGATTTA+TGG - chr3_1:56442671-56442690 Msa0363810:intron 20.0%
!!! TTTTCATATATGCTATAACT+TGG + chr3_1:56443030-56443049 None:intergenic 20.0%
!!! TTAAGTTTTTTATTCGAACA+TGG - chr3_1:56443122-56443141 Msa0363810:intron 20.0%
!! ACATACTATTTACTTAACTA+AGG + chr3_1:56443148-56443167 None:intergenic 20.0%
!! AGTTAATTGATTGTTTACAT+TGG - chr3_1:56443421-56443440 Msa0363810:CDS 20.0%
!! GTAAAGAAAGAAAAATTAGT+GGG + chr3_1:56442111-56442130 None:intergenic 20.0%
!! TGTAAAGAAAGAAAAATTAG+TGG + chr3_1:56442112-56442131 None:intergenic 20.0%
!!! TTTGTTTTGTTTTTCACATA+TGG + chr3_1:56442205-56442224 None:intergenic 20.0%
!! GTAAAATTGATCTTGATTTA+TGG - chr3_1:56442671-56442690 Msa0363810:intron 20.0%
!!! TTTTCATATATGCTATAACT+TGG + chr3_1:56443030-56443049 None:intergenic 20.0%
!!! TTAAGTTTTTTATTCGAACA+TGG - chr3_1:56443122-56443141 Msa0363810:intron 20.0%
!! ACATACTATTTACTTAACTA+AGG + chr3_1:56443148-56443167 None:intergenic 20.0%
!! AGTTAATTGATTGTTTACAT+TGG - chr3_1:56443421-56443440 Msa0363810:CDS 20.0%
!!! TTTTTCAGTATAGAAGAAGA+TGG - chr3_1:56442353-56442372 Msa0363810:CDS 25.0%
! TTGTTGATCATTGACAAATT+TGG - chr3_1:56442464-56442483 Msa0363810:intron 25.0%
!!! GTTAAGAATTTTTTTAGGGA+TGG - chr3_1:56442706-56442725 Msa0363810:intron 25.0%
!! ACATTGAAAGATCCTTATTT+AGG + chr3_1:56442800-56442819 None:intergenic 25.0%
! TACCAAAACAAAAATTGTAG+AGG + chr3_1:56442849-56442868 None:intergenic 25.0%
!!! TTTGGTAATTCATTTTTGAC+CGG - chr3_1:56442862-56442881 Msa0363810:intron 25.0%
! AATATAAAATGAAAGGCTTC+AGG + chr3_1:56443215-56443234 None:intergenic 25.0%
! AAGAAAAAACTGTGAAATGA+GGG + chr3_1:56443487-56443506 None:intergenic 25.0%
!!! TTTTTCAGTATAGAAGAAGA+TGG - chr3_1:56442353-56442372 Msa0363810:CDS 25.0%
! TTGTTGATCATTGACAAATT+TGG - chr3_1:56442464-56442483 Msa0363810:intron 25.0%
!!! GTTAAGAATTTTTTTAGGGA+TGG - chr3_1:56442706-56442725 Msa0363810:intron 25.0%
!! ACATTGAAAGATCCTTATTT+AGG + chr3_1:56442800-56442819 None:intergenic 25.0%
! TACCAAAACAAAAATTGTAG+AGG + chr3_1:56442849-56442868 None:intergenic 25.0%
!!! TTTGGTAATTCATTTTTGAC+CGG - chr3_1:56442862-56442881 Msa0363810:intron 25.0%
! AATATAAAATGAAAGGCTTC+AGG + chr3_1:56443215-56443234 None:intergenic 25.0%
! AAGAAAAAACTGTGAAATGA+GGG + chr3_1:56443487-56443506 None:intergenic 25.0%
ACATCCTATAGTTTCAACAT+AGG - chr3_1:56442148-56442167 Msa0363810:intron 30.0%
TACAGGATTAAGACAGAAAA+AGG + chr3_1:56442271-56442290 None:intergenic 30.0%
TAGAAAAACAGAAGAATGCA+AGG + chr3_1:56442436-56442455 None:intergenic 30.0%
!! AGCCTCTACAATTTTTGTTT+TGG - chr3_1:56442844-56442863 Msa0363810:intron 30.0%
! TTGTTTTCATTAGCAACCAA+AGG + chr3_1:56442943-56442962 None:intergenic 30.0%
GCGAATAATATTAGTAAGAC+GGG + chr3_1:56443172-56443191 None:intergenic 30.0%
GGCGAATAATATTAGTAAGA+CGG + chr3_1:56443173-56443192 None:intergenic 30.0%
!!! ACTAACCATTTTTTGAGCTT+TGG + chr3_1:56443309-56443328 None:intergenic 30.0%
TCTTAGATGGAATTTCAGAT+AGG - chr3_1:56443351-56443370 Msa0363810:intron 30.0%
!! TGAGATTGACAAAGTTTTAG+CGG - chr3_1:56443455-56443474 Msa0363810:intron 30.0%
GAAGAAAAAACTGTGAAATG+AGG + chr3_1:56443488-56443507 None:intergenic 30.0%
! TTACGCATCTGAATCTATTT+TGG - chr3_1:56443572-56443591 Msa0363810:intron 30.0%
TTGGTTTCTGCTATACAAAA+AGG + chr3_1:56443672-56443691 None:intergenic 30.0%
ACATCCTATAGTTTCAACAT+AGG - chr3_1:56442148-56442167 Msa0363810:intron 30.0%
TACAGGATTAAGACAGAAAA+AGG + chr3_1:56442271-56442290 None:intergenic 30.0%
TAGAAAAACAGAAGAATGCA+AGG + chr3_1:56442436-56442455 None:intergenic 30.0%
!! AGCCTCTACAATTTTTGTTT+TGG - chr3_1:56442844-56442863 Msa0363810:intron 30.0%
! TTGTTTTCATTAGCAACCAA+AGG + chr3_1:56442943-56442962 None:intergenic 30.0%
GCGAATAATATTAGTAAGAC+GGG + chr3_1:56443172-56443191 None:intergenic 30.0%
GGCGAATAATATTAGTAAGA+CGG + chr3_1:56443173-56443192 None:intergenic 30.0%
!!! ACTAACCATTTTTTGAGCTT+TGG + chr3_1:56443309-56443328 None:intergenic 30.0%
TCTTAGATGGAATTTCAGAT+AGG - chr3_1:56443351-56443370 Msa0363810:intron 30.0%
!! TGAGATTGACAAAGTTTTAG+CGG - chr3_1:56443455-56443474 Msa0363810:intron 30.0%
GAAGAAAAAACTGTGAAATG+AGG + chr3_1:56443488-56443507 None:intergenic 30.0%
! TTACGCATCTGAATCTATTT+TGG - chr3_1:56443572-56443591 Msa0363810:intron 30.0%
TTGGTTTCTGCTATACAAAA+AGG + chr3_1:56443672-56443691 None:intergenic 30.0%
GCTTCCTATGTTGAAACTAT+AGG + chr3_1:56442155-56442174 None:intergenic 35.0%
! CATATGGCTCTCTATGTTTT+TGG + chr3_1:56442189-56442208 None:intergenic 35.0%
! AGCTAGAATCTTTTCACACA+AGG - chr3_1:56442229-56442248 Msa0363810:intron 35.0%
! GCTAGAATCTTTTCACACAA+GGG - chr3_1:56442230-56442249 Msa0363810:intron 35.0%
GGATTAAGACAGAAAAAGGA+AGG + chr3_1:56442267-56442286 None:intergenic 35.0%
TTGCAGTCTTTGATGGAAAA+TGG - chr3_1:56442390-56442409 Msa0363810:intron 35.0%
AGAAGATTGCATTCAAGGTT+TGG - chr3_1:56442518-56442537 Msa0363810:CDS 35.0%
!!! GTTTGGTTTTTGCTTGATCT+TGG - chr3_1:56442535-56442554 Msa0363810:CDS 35.0%
TTAGGGATGGTTGATTGTAA+AGG - chr3_1:56442719-56442738 Msa0363810:intron 35.0%
TAGGGATGGTTGATTGTAAA+GGG - chr3_1:56442720-56442739 Msa0363810:intron 35.0%
AGTGATTCTGCACCTAAATA+AGG - chr3_1:56442785-56442804 Msa0363810:intron 35.0%
GTTTCATAAGCTATCTTGGA+AGG + chr3_1:56443008-56443027 None:intergenic 35.0%
CTTGGTTTCATAAGCTATCT+TGG + chr3_1:56443012-56443031 None:intergenic 35.0%
TTCAGGACCAAAAAAAACTC+AGG + chr3_1:56443198-56443217 None:intergenic 35.0%
TATATTTCAGAATCTGCACC+AGG - chr3_1:56443229-56443248 Msa0363810:intron 35.0%
ATATTTCAGAATCTGCACCA+GGG - chr3_1:56443230-56443249 Msa0363810:intron 35.0%
TGTTGCCAAAGCTCAAAAAA+TGG - chr3_1:56443301-56443320 Msa0363810:intron 35.0%
ATGTCTAGTGAAGTCTTAGA+TGG - chr3_1:56443338-56443357 Msa0363810:intron 35.0%
AGATGGAATTTCAGATAGGT+TGG - chr3_1:56443355-56443374 Msa0363810:intron 35.0%
TGATTGTTTACATTGGAGAG+TGG - chr3_1:56443428-56443447 Msa0363810:CDS 35.0%
! TAGTACCTCTTTTGTGTAAC+CGG + chr3_1:56443746-56443765 None:intergenic 35.0%
GCTTCCTATGTTGAAACTAT+AGG + chr3_1:56442155-56442174 None:intergenic 35.0%
! CATATGGCTCTCTATGTTTT+TGG + chr3_1:56442189-56442208 None:intergenic 35.0%
! AGCTAGAATCTTTTCACACA+AGG - chr3_1:56442229-56442248 Msa0363810:intron 35.0%
! GCTAGAATCTTTTCACACAA+GGG - chr3_1:56442230-56442249 Msa0363810:intron 35.0%
GGATTAAGACAGAAAAAGGA+AGG + chr3_1:56442267-56442286 None:intergenic 35.0%
TTGCAGTCTTTGATGGAAAA+TGG - chr3_1:56442390-56442409 Msa0363810:intron 35.0%
AGAAGATTGCATTCAAGGTT+TGG - chr3_1:56442518-56442537 Msa0363810:CDS 35.0%
!!! GTTTGGTTTTTGCTTGATCT+TGG - chr3_1:56442535-56442554 Msa0363810:CDS 35.0%
TTAGGGATGGTTGATTGTAA+AGG - chr3_1:56442719-56442738 Msa0363810:intron 35.0%
TAGGGATGGTTGATTGTAAA+GGG - chr3_1:56442720-56442739 Msa0363810:intron 35.0%
AGTGATTCTGCACCTAAATA+AGG - chr3_1:56442785-56442804 Msa0363810:intron 35.0%
GTTTCATAAGCTATCTTGGA+AGG + chr3_1:56443008-56443027 None:intergenic 35.0%
CTTGGTTTCATAAGCTATCT+TGG + chr3_1:56443012-56443031 None:intergenic 35.0%
TTCAGGACCAAAAAAAACTC+AGG + chr3_1:56443198-56443217 None:intergenic 35.0%
TATATTTCAGAATCTGCACC+AGG - chr3_1:56443229-56443248 Msa0363810:intron 35.0%
ATATTTCAGAATCTGCACCA+GGG - chr3_1:56443230-56443249 Msa0363810:intron 35.0%
TGTTGCCAAAGCTCAAAAAA+TGG - chr3_1:56443301-56443320 Msa0363810:intron 35.0%
ATGTCTAGTGAAGTCTTAGA+TGG - chr3_1:56443338-56443357 Msa0363810:intron 35.0%
AGATGGAATTTCAGATAGGT+TGG - chr3_1:56443355-56443374 Msa0363810:intron 35.0%
TGATTGTTTACATTGGAGAG+TGG - chr3_1:56443428-56443447 Msa0363810:CDS 35.0%
! TAGTACCTCTTTTGTGTAAC+CGG + chr3_1:56443746-56443765 None:intergenic 35.0%
TAAGCAGTTGCAGTCTTTGA+TGG - chr3_1:56442383-56442402 Msa0363810:intron 40.0%
GCAACAGAAGATTGCATTCA+AGG - chr3_1:56442513-56442532 Msa0363810:CDS 40.0%
! AGACTCTTTGAGAGAGCTAA+TGG - chr3_1:56442899-56442918 Msa0363810:intron 40.0%
ACAACTTGCACATCTTCCTT+TGG - chr3_1:56442924-56442943 Msa0363810:intron 40.0%
GGACCAAAAAAAACTCAGGA+CGG + chr3_1:56443194-56443213 None:intergenic 40.0%
ATCGTGCCAACATTTCAGTA+GGG + chr3_1:56443259-56443278 None:intergenic 40.0%
AATCGTGCCAACATTTCAGT+AGG + chr3_1:56443260-56443279 None:intergenic 40.0%
!! TCAGATAGGTTGGTTACTCT+TGG - chr3_1:56443365-56443384 Msa0363810:intron 40.0%
ATAGCAGAAACCAATTCCTG+CGG - chr3_1:56443678-56443697 Msa0363810:five_prime_UTR 40.0%
TTGTACAAATCCGCAGGAAT+TGG + chr3_1:56443691-56443710 None:intergenic 40.0%
TCTCAACTCATAGGAATGTC+CGG - chr3_1:56443724-56443743 Msa0363810:five_prime_UTR 40.0%
AATGTCCGGTTACACAAAAG+AGG - chr3_1:56443738-56443757 Msa0363810:five_prime_UTR 40.0%
TAAGCAGTTGCAGTCTTTGA+TGG - chr3_1:56442383-56442402 Msa0363810:intron 40.0%
GCAACAGAAGATTGCATTCA+AGG - chr3_1:56442513-56442532 Msa0363810:CDS 40.0%
! AGACTCTTTGAGAGAGCTAA+TGG - chr3_1:56442899-56442918 Msa0363810:intron 40.0%
ACAACTTGCACATCTTCCTT+TGG - chr3_1:56442924-56442943 Msa0363810:intron 40.0%
GGACCAAAAAAAACTCAGGA+CGG + chr3_1:56443194-56443213 None:intergenic 40.0%
ATCGTGCCAACATTTCAGTA+GGG + chr3_1:56443259-56443278 None:intergenic 40.0%
AATCGTGCCAACATTTCAGT+AGG + chr3_1:56443260-56443279 None:intergenic 40.0%
!! TCAGATAGGTTGGTTACTCT+TGG - chr3_1:56443365-56443384 Msa0363810:intron 40.0%
ATAGCAGAAACCAATTCCTG+CGG - chr3_1:56443678-56443697 Msa0363810:five_prime_UTR 40.0%
TTGTACAAATCCGCAGGAAT+TGG + chr3_1:56443691-56443710 None:intergenic 40.0%
TCTCAACTCATAGGAATGTC+CGG - chr3_1:56443724-56443743 Msa0363810:five_prime_UTR 40.0%
AATGTCCGGTTACACAAAAG+AGG - chr3_1:56443738-56443757 Msa0363810:five_prime_UTR 40.0%
!!! TCGCCGTCCTGAGTTTTTTT+TGG - chr3_1:56443188-56443207 Msa0363810:intron 45.0%
! ACATTTCAGTAGGGTATCCC+TGG + chr3_1:56443250-56443269 None:intergenic 45.0%
GGGATACCCTACTGAAATGT+TGG - chr3_1:56443250-56443269 Msa0363810:intron 45.0%
TGGCACGATTTCTCAAAGCT+AGG - chr3_1:56443270-56443289 Msa0363810:intron 45.0%
GGCACGATTTCTCAAAGCTA+GGG - chr3_1:56443271-56443290 Msa0363810:intron 45.0%
CGATTTCTCAAAGCTAGGGA+CGG - chr3_1:56443275-56443294 Msa0363810:intron 45.0%
GATTTCTCAAAGCTAGGGAC+GGG - chr3_1:56443276-56443295 Msa0363810:intron 45.0%
ACAGGTTTGTACAAATCCGC+AGG + chr3_1:56443697-56443716 None:intergenic 45.0%
! ATGAGTTGAGAATCTCGCAC+AGG + chr3_1:56443715-56443734 None:intergenic 45.0%
GTGCGAGATTCTCAACTCAT+AGG - chr3_1:56443715-56443734 Msa0363810:five_prime_UTR 45.0%
!!! TCGCCGTCCTGAGTTTTTTT+TGG - chr3_1:56443188-56443207 Msa0363810:intron 45.0%
! ACATTTCAGTAGGGTATCCC+TGG + chr3_1:56443250-56443269 None:intergenic 45.0%
GGGATACCCTACTGAAATGT+TGG - chr3_1:56443250-56443269 Msa0363810:intron 45.0%
TGGCACGATTTCTCAAAGCT+AGG - chr3_1:56443270-56443289 Msa0363810:intron 45.0%
GGCACGATTTCTCAAAGCTA+GGG - chr3_1:56443271-56443290 Msa0363810:intron 45.0%
CGATTTCTCAAAGCTAGGGA+CGG - chr3_1:56443275-56443294 Msa0363810:intron 45.0%
GATTTCTCAAAGCTAGGGAC+GGG - chr3_1:56443276-56443295 Msa0363810:intron 45.0%
ACAGGTTTGTACAAATCCGC+AGG + chr3_1:56443697-56443716 None:intergenic 45.0%
! ATGAGTTGAGAATCTCGCAC+AGG + chr3_1:56443715-56443734 None:intergenic 45.0%
GTGCGAGATTCTCAACTCAT+AGG - chr3_1:56443715-56443734 Msa0363810:five_prime_UTR 45.0%
CTCTCAAAGAGTCTCACACG+TGG + chr3_1:56442893-56442912 None:intergenic 50.0%
CTCTCAAAGAGTCTCACACG+TGG + chr3_1:56442893-56442912 None:intergenic 50.0%
AGTCTCACACGTGGTTACGC+CGG + chr3_1:56442884-56442903 None:intergenic 55.0%
AGTCTCACACGTGGTTACGC+CGG + chr3_1:56442884-56442903 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 56442047 56443777 56442047 ID=Msa0363810;Name=Msa0363810
chr3_1 mRNA 56442047 56443777 56442047 ID=Msa0363810-mRNA-1;Parent=Msa0363810;Name=Msa0363810-mRNA-1;_AED=0.41;_eAED=0.41;_QI=216|1|0.83|1|0.8|0.66|6|0|99
chr3_1 exon 56442047 56442139 56442047 ID=Msa0363810-mRNA-1:exon:10465;Parent=Msa0363810-mRNA-1
chr3_1 exon 56442348 56442401 56442348 ID=Msa0363810-mRNA-1:exon:10464;Parent=Msa0363810-mRNA-1
chr3_1 exon 56442502 56442585 56442502 ID=Msa0363810-mRNA-1:exon:10463;Parent=Msa0363810-mRNA-1
chr3_1 exon 56443290 56443318 56443290 ID=Msa0363810-mRNA-1:exon:10462;Parent=Msa0363810-mRNA-1
chr3_1 exon 56443413 56443463 56443413 ID=Msa0363810-mRNA-1:exon:10461;Parent=Msa0363810-mRNA-1
chr3_1 exon 56443573 56443777 56443573 ID=Msa0363810-mRNA-1:exon:10460;Parent=Msa0363810-mRNA-1
chr3_1 five_prime_UTR 56443573 56443777 56443573 ID=Msa0363810-mRNA-1:five_prime_utr;Parent=Msa0363810-mRNA-1
chr3_1 five_prime_UTR 56443453 56443463 56443453 ID=Msa0363810-mRNA-1:five_prime_utr;Parent=Msa0363810-mRNA-1
chr3_1 CDS 56443413 56443452 56443413 ID=Msa0363810-mRNA-1:cds;Parent=Msa0363810-mRNA-1
chr3_1 CDS 56443290 56443318 56443290 ID=Msa0363810-mRNA-1:cds;Parent=Msa0363810-mRNA-1
chr3_1 CDS 56442502 56442585 56442502 ID=Msa0363810-mRNA-1:cds;Parent=Msa0363810-mRNA-1
chr3_1 CDS 56442348 56442401 56442348 ID=Msa0363810-mRNA-1:cds;Parent=Msa0363810-mRNA-1
chr3_1 CDS 56442047 56442139 56442047 ID=Msa0363810-mRNA-1:cds;Parent=Msa0363810-mRNA-1
Gene Sequence

>Msa0363810

ATGGATGCAATTAAGCAGTTGCAGTCTTTGATGGAAAATGTTGATGAGCAACAGAAGATTGCATTCAAGAATCTGCACCAGGGATACCCTACTGAAATGTTGGCACGATTTCTCAAAGCTAGGGACGGGAATGTTGCCAAAGCTCAAAAAATGTTAATTGATTGTTTACATTGGAGAGTGGAAAATGAGATTGACAAAGTTTTAGCGAAACCAATTCCTGCGGATTTGTACAAACCTGTGCGAGATTCTCAACTCATAGGAATGTCCGGTTACACAAAAGAGGTACTACTCATATTTTAG

Protein sequence

>Msa0363810

MDAIKQLQSLMENVDEQQKIAFKNLHQGYPTEMLARFLKARDGNVAKAQKMLIDCLHWRVENEIDKVLAKPIPADLYKPVRDSQLIGMSGYTKEVLLIF*