AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1201640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201640 MtrunA17_Chr8g0371661 94.737 323 6 1 1 312 1 323 0.0 587
Msa1201640 MtrunA17_Chr5g0405681 80.606 330 40 4 1 311 1 325 1.81e-175 492
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201640 AT4G38630.1 68.634 322 79 5 1 311 1 311 3.57e-148 423

Find 88 sgRNAs with CRISPR-Local

Find 554 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGCTACACTTATCATTA+TGG 0.241037 8_1:-54808885 Msa1201640:intron
TCTTCCTCAGGTCTAGAAAT+AGG 0.241655 8_1:-54807442 Msa1201640:intron
GTCTACCCCTACCAGTGATT+TGG 0.242788 8_1:-54808558 Msa1201640:CDS
GCCTCTGCAGGTGGTGTATC+TGG 0.245950 8_1:-54806281 Msa1201640:intron
CTCTGTCGGATGTACTTATA+AGG 0.280586 8_1:-54807017 Msa1201640:intron
CTCACCGCCTTTCTCCTGTT+TGG 0.299610 8_1:+54806139 None:intergenic
GCAGGAAGCAGCTGCGAAAA+AGG 0.312036 8_1:-54806177 Msa1201640:CDS
AAACCTAGCTGCTGCCATTC+AGG 0.316711 8_1:-54807410 Msa1201640:CDS
AGCATCTGTTAGCTCTTCTT+TGG 0.324734 8_1:-54801287 Msa1201640:CDS
GCTAATTCAGGGTCCAAGTT+TGG 0.325391 8_1:+54806239 None:intergenic
TCTACCCCTACCAGTGATTT+GGG 0.334303 8_1:-54808557 Msa1201640:CDS
CAGTGATTTGGGCAAAATCT+TGG 0.352937 8_1:-54808546 Msa1201640:CDS
CTCAGAGCAAGAGCTAATTC+AGG 0.371235 8_1:+54806227 None:intergenic
GGTGTATCTGGATATGATTT+TGG 0.373205 8_1:-54806269 Msa1201640:CDS
TTTCGCAGCTGCTTCCTGCC+TGG 0.391968 8_1:+54806181 None:intergenic
CAAAACTCGAACTCCCTTCC+CGG 0.405445 8_1:+54808580 None:intergenic
GCTCGGTCATAGTTGCATCC+TGG 0.408251 8_1:+54806102 None:intergenic
AGTACATCCGACAGAGCATT+TGG 0.417933 8_1:+54807024 None:intergenic
TGCCATTCAGGTGGCACAGT+TGG 0.425490 8_1:-54807398 Msa1201640:CDS
AGTGATTTGGGCAAAATCTT+GGG 0.427099 8_1:-54808545 Msa1201640:CDS
AAGAAAATGTTGGAGATGAT+TGG 0.430493 8_1:-54807189 Msa1201640:CDS
GACACTGTTAGTCTTATTTG+CGG 0.431330 8_1:-54808803 Msa1201640:CDS
CTCGGTCATAGTTGCATCCT+GGG 0.443007 8_1:+54806103 None:intergenic
TGCAGAGGATGCTTCCAAAC+AGG 0.449158 8_1:-54806153 Msa1201640:CDS
CAATGGAAGAGGAGAGAGCC+AGG 0.451887 8_1:-54806199 Msa1201640:CDS
GGAAGAGGAGAGAGCCAGGC+AGG 0.467566 8_1:-54806195 Msa1201640:CDS
AGATCAGAGAATTGAATTGA+AGG 0.473612 8_1:+54809089 None:intergenic
TGAGAATGCTCTTCTACAAC+AGG 0.478713 8_1:-54805490 Msa1201640:CDS
AACTCACCTCGAGCCAACTC+AGG 0.480781 8_1:+54805387 None:intergenic
TGAGGGGAAGACAGAGAAGC+TGG 0.484092 8_1:-54807109 Msa1201640:CDS
GCACTTGACATTGTCAACTT+TGG 0.484613 8_1:-54807141 Msa1201640:CDS
TCTTGCTCTGAGAGTTTCAA+TGG 0.484864 8_1:-54806216 Msa1201640:CDS
TATTTGCGGTGCTAAAACTC+AGG 0.487975 8_1:-54808789 Msa1201640:intron
AGCTTCTGTACTGGTTCGCT+CGG 0.490367 8_1:+54806085 None:intergenic
CATAGGCTCAGCTTCTGTAC+TGG 0.491628 8_1:+54806076 None:intergenic
TCGAACTCCCTTCCCGGCCA+TGG 0.492622 8_1:+54808586 None:intergenic
TCTAATCCTGAAAATACTGT+TGG 0.499375 8_1:-54808617 Msa1201640:CDS
GATCATCCATTGACATTGCA+AGG 0.500246 8_1:+54805466 None:intergenic
ACCTGGTCCAAATGCTCTGT+CGG 0.502391 8_1:-54807031 Msa1201640:CDS
TCTGAGAGTTTCAATGGAAG+AGG 0.510357 8_1:-54806210 Msa1201640:CDS
ACTTGCATTAGCATTTGCTC+AGG 0.510823 8_1:-54801224 None:intergenic
ACAGGCCCTTGCAATGTCAA+TGG 0.511218 8_1:-54805472 Msa1201640:CDS
GTTACCTCGAGCACCATTGT+TGG 0.511678 8_1:+54809010 None:intergenic
CAGTACAGAAGCTGAGCCTA+TGG 0.512282 8_1:-54806075 Msa1201640:intron
CAAGCATGAGAAGAAAATGT+TGG 0.513604 8_1:-54807199 Msa1201640:CDS
AGCCAACTGTGCCACCTGAA+TGG 0.521804 8_1:+54807396 None:intergenic
TTTACTGGTGATGGAGAAGG+TGG 0.527650 8_1:-54806332 Msa1201640:CDS
CTTCCATCATGGTTAACTGC+AGG 0.530356 8_1:+54805444 None:intergenic
GTTATGACCATGGCCGGGAA+GGG 0.531594 8_1:-54808593 Msa1201640:CDS
AAAATCTTGGGTTGTATGCA+TGG 0.533026 8_1:-54808533 Msa1201640:intron
TCAGAGCAAGAGCTAATTCA+GGG 0.536745 8_1:+54806228 None:intergenic
TTTCTTCAACTTTCCAACAA+TGG 0.539759 8_1:-54809023 Msa1201640:exon
ATTGAAGGTGCTTGCGAAGG+AGG 0.539968 8_1:+54809104 None:intergenic
GATGCTTCCAAACAGGAGAA+AGG 0.543596 8_1:-54806146 Msa1201640:CDS
CACATGGTTCATGTTCCACC+TGG 0.545946 8_1:-54807048 Msa1201640:CDS
CACAGTTGGCTCTTAAGCAT+CGG 0.549170 8_1:-54807384 Msa1201640:CDS
GTTGGAGTTATGACCATGGC+CGG 0.550710 8_1:-54808599 Msa1201640:CDS
AGAATAAGAAGCAGCAGCAA+AGG 0.554704 8_1:-54807360 Msa1201640:CDS
CCACCTGAATGGCAGCAGCT+AGG 0.557823 8_1:+54807407 None:intergenic
TTTGCCCAAATCACTGGTAG+GGG 0.564614 8_1:+54808553 None:intergenic
CATTATTGTTTACAGCTGCA+AGG 0.566431 8_1:+54807079 None:intergenic
AGTTATGACCATGGCCGGGA+AGG 0.571550 8_1:-54808594 Msa1201640:CDS
TGAATTGAAGGTGCTTGCGA+AGG 0.573228 8_1:+54809101 None:intergenic
TGTTCCTTTGACAGACACAT+TGG 0.579430 8_1:-54803854 Msa1201640:intron
AGCTACAGATGACCCTGAGT+TGG 0.581144 8_1:-54805400 Msa1201640:CDS
TATCTGCATCTCTTCCATCA+TGG 0.583898 8_1:+54805433 None:intergenic
CAACTTTGGAGAAGAAGATG+AGG 0.586931 8_1:-54807127 Msa1201640:CDS
CTTTCCAACAATGGTGCTCG+AGG 0.591593 8_1:-54809014 Msa1201640:intron
GGTGATGGAGAAGGTGGAAG+CGG 0.592077 8_1:-54806326 Msa1201640:intron
TGAGCAGCAAGCTACTTCCC+AGG 0.598003 8_1:-54806120 Msa1201640:CDS
AACTTTGGAGAAGAAGATGA+GGG 0.598180 8_1:-54807126 Msa1201640:CDS
GATCCTGCAGTTAACCATGA+TGG 0.599212 8_1:-54805447 Msa1201640:CDS
ACTCACCTCGAGCCAACTCA+GGG 0.602418 8_1:+54805388 None:intergenic
TTGGAGTTATGACCATGGCC+GGG 0.605725 8_1:-54808598 Msa1201640:CDS
AACTCTGAACATATGCGTAA+CGG 0.612049 8_1:-54808860 Msa1201640:CDS
TCCGACAGAGCATTTGGACC+AGG 0.615302 8_1:+54807030 None:intergenic
ATCATCCATTGACATTGCAA+GGG 0.626501 8_1:+54805467 None:intergenic
CAATAATGATAGTAGCCACA+TGG 0.640045 8_1:-54807064 Msa1201640:CDS
CCTAGCTGCTGCCATTCAGG+TGG 0.642995 8_1:-54807407 Msa1201640:CDS
GATGACCCTGAGTTGGCTCG+AGG 0.650651 8_1:-54805393 Msa1201640:intron
GATTGAGCTTGAAATCGAGA+AGG 0.652006 8_1:+54808827 None:intergenic
GCAAATAAGACTAACAGTGT+CGG 0.657951 8_1:+54808805 None:intergenic
GACAGAGCATTTGGACCAGG+TGG 0.676689 8_1:+54807033 None:intergenic
TACTGTTGGAGTTATGACCA+TGG 0.686072 8_1:-54808603 Msa1201640:CDS
TCCTCAGGTCTAGAAATAGG+CGG 0.696316 8_1:-54807439 Msa1201640:intron
ACTTTGGAGAAGAAGATGAG+GGG 0.698383 8_1:-54807125 Msa1201640:CDS
GCTTCCAAACAGGAGAAAGG+CGG 0.712590 8_1:-54806143 Msa1201640:CDS
CAGGTGGAACATGAACCATG+TGG 0.807488 8_1:+54807049 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTAAATGTATTAG+TGG - chr8_1:54805541-54805560 Msa1201640:intron 10.0%
!!! TATTTTTTTTGCTTTTTAAA+TGG - chr8_1:54806190-54806209 Msa1201640:CDS 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr8_1:54808157-54808176 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr8_1:54808158-54808177 None:intergenic 10.0%
!!! ATATTTTGTAGTTTTTAATT+TGG + chr8_1:54808573-54808592 None:intergenic 10.0%
!!! CATTAATCTTTGATTTTAAT+AGG - chr8_1:54801478-54801497 Msa1201640:intron 15.0%
!!! TGGTTTTTATGTTTAATTTT+AGG - chr8_1:54801691-54801710 Msa1201640:intron 15.0%
!!! TTATGTTTAATTTTAGGTTT+AGG - chr8_1:54801697-54801716 Msa1201640:intron 15.0%
!!! TATGTTTAATTTTAGGTTTA+GGG - chr8_1:54801698-54801717 Msa1201640:intron 15.0%
!! AAAAGAAAAAAAAAACACTT+GGG + chr8_1:54802258-54802277 None:intergenic 15.0%
!! AAAGGCTATATATATATATA+AGG + chr8_1:54803748-54803767 None:intergenic 15.0%
!! TTATATATATATATAGCCTT+TGG - chr8_1:54803747-54803766 Msa1201640:intron 15.0%
!! ATGAATTTATCAGATTATAA+AGG + chr8_1:54803965-54803984 None:intergenic 15.0%
!!! GATAACAATTGTATTAATTT+TGG - chr8_1:54805147-54805166 Msa1201640:intron 15.0%
!!! TCTTAGTTTATTTTTTTGTT+TGG - chr8_1:54805195-54805214 Msa1201640:intron 15.0%
!! AAAATAAATATATGCTTAAG+CGG - chr8_1:54806147-54806166 Msa1201640:CDS 15.0%
!! AAAGAATCATATTAAGAATA+TGG + chr8_1:54807234-54807253 None:intergenic 15.0%
!! TTAAACAAAAATTACTGAAA+TGG - chr8_1:54807770-54807789 Msa1201640:intron 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr8_1:54808156-54808175 None:intergenic 15.0%
!!! TCTTTTTTAGAAGAATTTTA+GGG + chr8_1:54808426-54808445 None:intergenic 15.0%
!!! TTCTTTTTTAGAAGAATTTT+AGG + chr8_1:54808427-54808446 None:intergenic 15.0%
!! AGATTAGAGGAAAATAAAAT+CGG + chr8_1:54801401-54801420 None:intergenic 20.0%
!!! TTGATTCTAAGCAATTTTTT+AGG - chr8_1:54801641-54801660 Msa1201640:intron 20.0%
!!! TGATTCTAAGCAATTTTTTA+GGG - chr8_1:54801642-54801661 Msa1201640:intron 20.0%
!!! TTTTTTTCCTCTTAAATCTT+TGG - chr8_1:54801877-54801896 Msa1201640:intron 20.0%
!!! CTTTATTTTATCTTTCGATA+TGG + chr8_1:54802062-54802081 None:intergenic 20.0%
!! AAAGAAAAAAAAAACACTTG+GGG + chr8_1:54802257-54802276 None:intergenic 20.0%
!! GAAAAGAAAAAAAAAACACT+TGG + chr8_1:54802259-54802278 None:intergenic 20.0%
!! AAATGAATAAATAACACTTG+GGG + chr8_1:54802378-54802397 None:intergenic 20.0%
!! CAAATGAATAAATAACACTT+GGG + chr8_1:54802379-54802398 None:intergenic 20.0%
!! ACAAATGAATAAATAACACT+TGG + chr8_1:54802380-54802399 None:intergenic 20.0%
!! TAAGTAAATTCTATGTGAAT+TGG - chr8_1:54802421-54802440 Msa1201640:intron 20.0%
!!! TCTTTTTCTAAATTTGTACA+CGG - chr8_1:54803418-54803437 Msa1201640:intron 20.0%
!! ATGAAAGATTTGACATTTAA+AGG + chr8_1:54803669-54803688 None:intergenic 20.0%
!! ATATATATATATAAGGTGGA+TGG + chr8_1:54803741-54803760 None:intergenic 20.0%
!! ATTTATCAGATTATAAAGGA+GGG + chr8_1:54803961-54803980 None:intergenic 20.0%
!! AATTTATCAGATTATAAAGG+AGG + chr8_1:54803962-54803981 None:intergenic 20.0%
!! ATTAGTTATTGTAAATGCTA+TGG - chr8_1:54804576-54804595 Msa1201640:intron 20.0%
!! TTAGTTATTGTAAATGCTAT+GGG - chr8_1:54804577-54804596 Msa1201640:intron 20.0%
!!! AGTGTTGTTAAATACTTAAA+TGG - chr8_1:54805565-54805584 Msa1201640:intron 20.0%
!! AGAAACAAAGAATTATTACT+CGG + chr8_1:54805755-54805774 None:intergenic 20.0%
!! TTCATAGAAAATGTTAATGT+TGG - chr8_1:54805892-54805911 Msa1201640:intron 20.0%
!!! ATTTTTTCAAATCGAACTAT+TGG - chr8_1:54806371-54806390 Msa1201640:intron 20.0%
!! GAATATGGAACATTTAAATT+GGG + chr8_1:54807219-54807238 None:intergenic 20.0%
!! AGAATATGGAACATTTAAAT+TGG + chr8_1:54807220-54807239 None:intergenic 20.0%
!! GATGTGTTTCATATAATAAA+TGG + chr8_1:54807629-54807648 None:intergenic 20.0%
!! AGAAAATTATCAAGTATACT+AGG + chr8_1:54807735-54807754 None:intergenic 20.0%
!!! GAGTATATCATTTTTTTCAA+AGG - chr8_1:54808223-54808242 Msa1201640:intron 20.0%
!! AAATCTTGAAAAAACTAGAA+AGG - chr8_1:54808527-54808546 Msa1201640:intron 20.0%
!! AAATAATTAGACAATACTCA+TGG + chr8_1:54809009-54809028 None:intergenic 20.0%
! TAGAATCAAGAATTAAGCAT+TGG + chr8_1:54801630-54801649 None:intergenic 25.0%
! TATATATTGCATTTCAGACT+TGG - chr8_1:54801671-54801690 Msa1201640:intron 25.0%
!!! GCTTATTTTTTAAGTTCTCT+AGG + chr8_1:54802127-54802146 None:intergenic 25.0%
! CATTTGTACAATTAAGTACA+AGG - chr8_1:54802393-54802412 Msa1201640:intron 25.0%
!! TCTATGTGAATTGGATTTTT+AGG - chr8_1:54802430-54802449 Msa1201640:intron 25.0%
!! ATTGACTTATTTGAGCTTAT+CGG - chr8_1:54802495-54802514 Msa1201640:intron 25.0%
!! ATTGTTTTCATAAGCTATCA+TGG + chr8_1:54802613-54802632 None:intergenic 25.0%
!! ATTGAGTTGTTTATCCAAAT+AGG - chr8_1:54802680-54802699 Msa1201640:intron 25.0%
! TAAAATGATAAGAAGCCAAA+AGG + chr8_1:54802720-54802739 None:intergenic 25.0%
!! TCTTATCATTTTAGATGCAT+CGG - chr8_1:54802727-54802746 Msa1201640:intron 25.0%
! AGAAATATTACACTTTCATC+TGG - chr8_1:54802800-54802819 Msa1201640:intron 25.0%
! GAAATATTACACTTTCATCT+GGG - chr8_1:54802801-54802820 Msa1201640:intron 25.0%
! AAATATTACACTTTCATCTG+GGG - chr8_1:54802802-54802821 Msa1201640:intron 25.0%
!!! TTTATTCATTTTTCTTCCTC+AGG - chr8_1:54802927-54802946 Msa1201640:intron 25.0%
!! AAAGCACCAAATTAGATTAT+GGG + chr8_1:54803149-54803168 None:intergenic 25.0%
!! TAAAGCACCAAATTAGATTA+TGG + chr8_1:54803150-54803169 None:intergenic 25.0%
! AAAAGAGTTAGAAGAGAAAT+AGG + chr8_1:54803540-54803559 None:intergenic 25.0%
!! ATTTCTCTTCTAACTCTTTT+TGG - chr8_1:54803540-54803559 Msa1201640:intron 25.0%
! GGCTATATATATATATAAGG+TGG + chr8_1:54803745-54803764 None:intergenic 25.0%
! AGAAAAGAATAATACTAGAG+GGG + chr8_1:54803872-54803891 None:intergenic 25.0%
! GAGAAAAGAATAATACTAGA+GGG + chr8_1:54803873-54803892 None:intergenic 25.0%
! TGAGAAAAGAATAATACTAG+AGG + chr8_1:54803874-54803893 None:intergenic 25.0%
!!! TGTATTTTGTTTGTTTCTTG+AGG - chr8_1:54803898-54803917 Msa1201640:intron 25.0%
!!! GTATTTTGTTTGTTTCTTGA+GGG - chr8_1:54803899-54803918 Msa1201640:intron 25.0%
! TAACTAATAACACAAACCAT+AGG + chr8_1:54804325-54804344 None:intergenic 25.0%
!! AAAGTACTTAGAATATATGC+TGG + chr8_1:54804529-54804548 None:intergenic 25.0%
! TCTGTATAATTTAAACCACA+TGG + chr8_1:54804553-54804572 None:intergenic 25.0%
! ATGAAAAAGACGTTATTCAT+TGG + chr8_1:54804671-54804690 None:intergenic 25.0%
!!! AATGAATAACGTCTTTTTCA+TGG - chr8_1:54804670-54804689 Msa1201640:intron 25.0%
!!! ATGAATAACGTCTTTTTCAT+GGG - chr8_1:54804671-54804690 Msa1201640:intron 25.0%
!!! CATTTTGCAGTTTTTTTGTT+TGG - chr8_1:54804711-54804730 Msa1201640:intron 25.0%
!! ACAAAGTTAACTGATTCAAA+CGG + chr8_1:54804750-54804769 None:intergenic 25.0%
! TAAGAACTAACTTCTAACAT+AGG + chr8_1:54805090-54805109 None:intergenic 25.0%
!!! TTAATTTTGGTTCAAACAAG+AGG - chr8_1:54805160-54805179 Msa1201640:intron 25.0%
!!! TAATTTTGGTTCAAACAAGA+GGG - chr8_1:54805161-54805180 Msa1201640:intron 25.0%
! GTTGTTAAATACTTAAATGG+CGG - chr8_1:54805568-54805587 Msa1201640:intron 25.0%
!!! GATTTTTTTAAAACTGCCAT+AGG - chr8_1:54805604-54805623 Msa1201640:intron 25.0%
! TAATAAAAGAAGACTTACGT+TGG + chr8_1:54805846-54805865 None:intergenic 25.0%
!! TTTTATTAGCAAATACCACT+GGG - chr8_1:54805858-54805877 Msa1201640:intron 25.0%
! TTTCCTTATTCAGTATAAGT+TGG - chr8_1:54805994-54806013 Msa1201640:intron 25.0%
!!! GTTCTAAAAAATCATTCCAT+AGG + chr8_1:54806052-54806071 None:intergenic 25.0%
!!! TTTTTTAGAACCATAGTTGT+TGG - chr8_1:54806061-54806080 Msa1201640:intron 25.0%
!! TTGTTGGTGGAATTTATATA+TGG - chr8_1:54806077-54806096 Msa1201640:CDS 25.0%
!!! TTTTGCTTTTTAAATGGTGA+AGG - chr8_1:54806196-54806215 Msa1201640:CDS 25.0%
! GTAAATGACATATTCAAATG+TGG - chr8_1:54806276-54806295 Msa1201640:intron 25.0%
!! GTTCGATTTGAAAAAATGTT+GGG + chr8_1:54806368-54806387 None:intergenic 25.0%
!! AGTTCGATTTGAAAAAATGT+TGG + chr8_1:54806369-54806388 None:intergenic 25.0%
!!! CATACGTATACATTGTTTTA+TGG - chr8_1:54806695-54806714 Msa1201640:intron 25.0%
! TAGGAGGAGTAAATATTATA+TGG - chr8_1:54806941-54806960 Msa1201640:intron 25.0%
!! TAAATAGAGCAATTTTGCAT+TGG + chr8_1:54807074-54807093 None:intergenic 25.0%
! AATGCAAAATTGCTCTATTT+AGG - chr8_1:54807073-54807092 Msa1201640:CDS 25.0%
! ACATGACCCATATTATATTT+AGG - chr8_1:54807128-54807147 Msa1201640:CDS 25.0%
! ACAGAGCCTAAATATAATAT+GGG + chr8_1:54807137-54807156 None:intergenic 25.0%
! AACAGAGCCTAAATATAATA+TGG + chr8_1:54807138-54807157 None:intergenic 25.0%
! ATTATATTTAGGCTCTGTTT+AGG - chr8_1:54807139-54807158 Msa1201640:CDS 25.0%
! TTATATTTAGGCTCTGTTTA+GGG - chr8_1:54807140-54807159 Msa1201640:CDS 25.0%
! ATATGATTCTTTCCTTACAT+TGG - chr8_1:54807242-54807261 Msa1201640:intron 25.0%
! TATGATTCTTTCCTTACATT+GGG - chr8_1:54807243-54807262 Msa1201640:intron 25.0%
!!! TTTTTTAGTTTCCCAATGTA+AGG + chr8_1:54807257-54807276 None:intergenic 25.0%
! ACATTGGGAAACTAAAAAAA+TGG - chr8_1:54807258-54807277 Msa1201640:intron 25.0%
!!! ACTAAAAAAATGGATTGGAT+TGG - chr8_1:54807268-54807287 Msa1201640:intron 25.0%
!! CTTCAAATTTTGTCTATGTT+TGG - chr8_1:54807320-54807339 Msa1201640:intron 25.0%
!! ACACTACACTTTTCAATTTA+GGG - chr8_1:54807597-54807616 Msa1201640:intron 25.0%
! ACAAAAATTACTGAAATGGA+AGG - chr8_1:54807774-54807793 Msa1201640:intron 25.0%
!! TTTAGAATTAGATTCCTAGT+TGG + chr8_1:54807816-54807835 None:intergenic 25.0%
!!! GTAAATGACTCAGTTATTTT+GGG + chr8_1:54808009-54808028 None:intergenic 25.0%
!! AGTAAATGACTCAGTTATTT+TGG + chr8_1:54808010-54808029 None:intergenic 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr8_1:54808045-54808064 None:intergenic 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr8_1:54808046-54808065 None:intergenic 25.0%
AGATCAGAGAATTGAATTGA+AGG + chr8_1:54801295-54801314 None:intergenic 30.0%
TTTCTTCAACTTTCCAACAA+TGG - chr8_1:54801358-54801377 Msa1201640:intron 30.0%
ATTGAATCGATGAAGATTAG+AGG + chr8_1:54801414-54801433 None:intergenic 30.0%
ATAGGCTACACTTATCATTA+TGG - chr8_1:54801496-54801515 Msa1201640:intron 30.0%
!! TCAAGAATTAAGCATTGGAT+TGG + chr8_1:54801625-54801644 None:intergenic 30.0%
TCTAATCCTGAAAATACTGT+TGG - chr8_1:54801764-54801783 Msa1201640:intron 30.0%
! ATAACTCCAACAGTATTTTC+AGG + chr8_1:54801773-54801792 None:intergenic 30.0%
CTAGTAGATAAGCTCAAATA+AGG - chr8_1:54802339-54802358 Msa1201640:intron 30.0%
!!! TGAATTGGATTTTTAGGTTG+TGG - chr8_1:54802436-54802455 Msa1201640:intron 30.0%
AAAGAAACTATGGTCCTATT+TGG + chr8_1:54802697-54802716 None:intergenic 30.0%
GAAACAAGTTTACATCGTAT+TGG - chr8_1:54802883-54802902 Msa1201640:intron 30.0%
AAGAAAATGTTGGAGATGAT+TGG - chr8_1:54803192-54803211 Msa1201640:intron 30.0%
GATGTACTTATAAGGTTTGT+GGG - chr8_1:54803372-54803391 Msa1201640:intron 30.0%
!!! CTTCTAAAATTTTACCGAAC+AGG + chr8_1:54803467-54803486 None:intergenic 30.0%
! TTTGACATTTAAAGGAGTAC+TGG + chr8_1:54803661-54803680 None:intergenic 30.0%
AAAAGAATAATACTAGAGGG+GGG + chr8_1:54803870-54803889 None:intergenic 30.0%
GAAAAGAATAATACTAGAGG+GGG + chr8_1:54803871-54803890 None:intergenic 30.0%
! AGTTTTTATAGAAGGAAGGA+AGG + chr8_1:54803937-54803956 None:intergenic 30.0%
ATTTATGTTACCTTGTGTTG+TGG - chr8_1:54804013-54804032 Msa1201640:intron 30.0%
GACAAAACAGGTAACAAAAA+TGG + chr8_1:54804354-54804373 None:intergenic 30.0%
TGACAATCAAAACAAAGCAA+AGG + chr8_1:54804376-54804395 None:intergenic 30.0%
CCATAAAGACTGATAACAAA+TGG + chr8_1:54804452-54804471 None:intergenic 30.0%
!! CCATTTGTTATCAGTCTTTA+TGG - chr8_1:54804449-54804468 Msa1201640:intron 30.0%
! TTTGTTATCAGTCTTTATGG+AGG - chr8_1:54804452-54804471 Msa1201640:intron 30.0%
! ATTCTAAGTACTTTTCCATG+TGG - chr8_1:54804535-54804554 Msa1201640:intron 30.0%
!!! GTTTTTTTGTTTGGTTCTAC+CGG - chr8_1:54804720-54804739 Msa1201640:intron 30.0%
ACTCATGTCTAGATGAATAA+TGG + chr8_1:54805039-54805058 None:intergenic 30.0%
!! TTTTTGTTTGGTGATCTAGA+TGG - chr8_1:54805207-54805226 Msa1201640:intron 30.0%
!! TTTTGTTTGGTGATCTAGAT+GGG - chr8_1:54805208-54805227 Msa1201640:intron 30.0%
! ATTTCTTGTCTTTTGTTGCT+TGG - chr8_1:54805402-54805421 Msa1201640:CDS 30.0%
! CTTTTATTAGCAAATACCAC+TGG - chr8_1:54805857-54805876 Msa1201640:intron 30.0%
AATGTTGGCATGATTGAATT+TGG - chr8_1:54805907-54805926 Msa1201640:intron 30.0%
AGTCCAACTTATACTGAATA+AGG + chr8_1:54806000-54806019 None:intergenic 30.0%
ATAAATTCCACCAACAACTA+TGG + chr8_1:54806074-54806093 None:intergenic 30.0%
CTCACTCAAATTATTTAGCA+AGG + chr8_1:54806127-54806146 None:intergenic 30.0%
TTATGATTGTATTGTCCATC+AGG - chr8_1:54806433-54806452 Msa1201640:intron 30.0%
!! CAGATGTATGTCTTTTGATT+AGG - chr8_1:54806634-54806653 Msa1201640:intron 30.0%
TTAATGCCTTCAATGATAAC+AGG + chr8_1:54806668-54806687 None:intergenic 30.0%
GGATTCATATACTTCTGTAA+TGG + chr8_1:54806752-54806771 None:intergenic 30.0%
!!! GTTTTTAGTTTACAAGCAGA+GGG - chr8_1:54806796-54806815 Msa1201640:intron 30.0%
!!! TTTTTAGTTTACAAGCAGAG+GGG - chr8_1:54806797-54806816 Msa1201640:intron 30.0%
ATGCTCTTAAGTATGAAACT+AGG + chr8_1:54806922-54806941 None:intergenic 30.0%
! AGTTTCATACTTAAGAGCAT+AGG - chr8_1:54806922-54806941 Msa1201640:intron 30.0%
TATATTTAGGCTCTGTTTAG+GGG - chr8_1:54807141-54807160 Msa1201640:CDS 30.0%
AAGGATGAAAGAGAAATTGA+AGG - chr8_1:54807182-54807201 Msa1201640:CDS 30.0%
GGGAAACTAAAAAAATGGAT+TGG - chr8_1:54807263-54807282 Msa1201640:intron 30.0%
!!! CTTTTGAGAGTGTTTTTGAA+AGG + chr8_1:54807392-54807411 None:intergenic 30.0%
! CACACTACACTTTTCAATTT+AGG - chr8_1:54807596-54807615 Msa1201640:intron 30.0%
TATCATTATTTCCACCAACT+AGG - chr8_1:54807799-54807818 Msa1201640:intron 30.0%
!! TGAGAAGAAATGAGTTGATT+TGG + chr8_1:54807877-54807896 None:intergenic 30.0%
ACATAAACCTATATATGACG+CGG - chr8_1:54807951-54807970 Msa1201640:intron 30.0%
!!! TTATTTTGGGTCAGATATTC+CGG + chr8_1:54807996-54808015 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr8_1:54808149-54808168 None:intergenic 30.0%
!! AACGTTTATTTTCCTCTACT+GGG + chr8_1:54808487-54808506 None:intergenic 30.0%
!! TAACGTTTATTTTCCTCTAC+TGG + chr8_1:54808488-54808507 None:intergenic 30.0%
!!! GCATACGTTAGTTTTTAGAA+GGG + chr8_1:54808625-54808644 None:intergenic 30.0%
ACACGGTATTCTTTAGTAAA+AGG - chr8_1:54808662-54808681 Msa1201640:intron 30.0%
CTGCTTGCATATAAAATGAA+AGG + chr8_1:54808747-54808766 None:intergenic 30.0%
AAATGAAAGATATGATGCCA+AGG + chr8_1:54808986-54809005 None:intergenic 30.0%
! CTGCAAGAAATAAGTACTTT+TGG + chr8_1:54809069-54809088 None:intergenic 30.0%
!! CAAAAGTACTTATTTCTTGC+AGG - chr8_1:54809067-54809086 Msa1201640:five_prime_UTR 30.0%
AGAGGAAAATAAAATCGGAG+AGG + chr8_1:54801396-54801415 None:intergenic 35.0%
CACTGCAATTCGATCAATTA+GGG - chr8_1:54801439-54801458 Msa1201640:intron 35.0%
AACTCTGAACATATGCGTAA+CGG - chr8_1:54801521-54801540 Msa1201640:intron 35.0%
GCAAATAAGACTAACAGTGT+CGG + chr8_1:54801579-54801598 None:intergenic 35.0%
!! GACACTGTTAGTCTTATTTG+CGG - chr8_1:54801578-54801597 Msa1201640:intron 35.0%
! AGTGATTTGGGCAAAATCTT+GGG - chr8_1:54801836-54801855 Msa1201640:intron 35.0%
! AAAATCTTGGGTTGTATGCA+TGG - chr8_1:54801848-54801867 Msa1201640:intron 35.0%
!! GAGAGTACCAAAGATTTAAG+AGG + chr8_1:54801887-54801906 None:intergenic 35.0%
ATAAGTGCTCTATGCTATGT+TGG - chr8_1:54801911-54801930 Msa1201640:intron 35.0%
AGGAAATCTGGTTACAATGT+AGG - chr8_1:54801934-54801953 Msa1201640:intron 35.0%
AATCTGGTTACAATGTAGGA+TGG - chr8_1:54801938-54801957 Msa1201640:intron 35.0%
GCTATAAGCTGCAAATTATG+CGG + chr8_1:54801998-54802017 None:intergenic 35.0%
CTCAAATAAGCCAATCCAAA+TGG - chr8_1:54802230-54802249 Msa1201640:intron 35.0%
! GACCATAGTTTCTTTCCTTT+TGG - chr8_1:54802702-54802721 Msa1201640:intron 35.0%
AGCCAAAAGGAAAGAAACTA+TGG + chr8_1:54802707-54802726 None:intergenic 35.0%
! CAAAGGATTGTTGTCTTTTG+TGG - chr8_1:54803038-54803057 Msa1201640:intron 35.0%
ACCAAATTAGATTATGGGAG+GGG + chr8_1:54803144-54803163 None:intergenic 35.0%
CACCAAATTAGATTATGGGA+GGG + chr8_1:54803145-54803164 None:intergenic 35.0%
! ATTTTCTTCTCATGCTTGAC+AGG + chr8_1:54803180-54803199 None:intergenic 35.0%
CAAGCATGAGAAGAAAATGT+TGG - chr8_1:54803182-54803201 Msa1201640:intron 35.0%
! AACTTTGGAGAAGAAGATGA+GGG - chr8_1:54803255-54803274 Msa1201640:intron 35.0%
CATTATTGTTTACAGCTGCA+AGG + chr8_1:54803305-54803324 None:intergenic 35.0%
CAATAATGATAGTAGCCACA+TGG - chr8_1:54803317-54803336 Msa1201640:intron 35.0%
GGATGTACTTATAAGGTTTG+TGG - chr8_1:54803371-54803390 Msa1201640:intron 35.0%
CAGGAAATCCCAATTCAAAT+GGG + chr8_1:54803448-54803467 None:intergenic 35.0%
ACAGGAAATCCCAATTCAAA+TGG + chr8_1:54803449-54803468 None:intergenic 35.0%
TTGAATTGGGATTTCCTGTT+CGG - chr8_1:54803450-54803469 Msa1201640:intron 35.0%
GAAGAATTCATGGCTATTTG+GGG + chr8_1:54803639-54803658 None:intergenic 35.0%
GGAAGAATTCATGGCTATTT+GGG + chr8_1:54803640-54803659 None:intergenic 35.0%
TGGAAGAATTCATGGCTATT+TGG + chr8_1:54803641-54803660 None:intergenic 35.0%
AATGTAGCAAACAACTCCAA+AGG + chr8_1:54803766-54803785 None:intergenic 35.0%
! TGATTTTTACATCCGAGTCT+TGG - chr8_1:54803787-54803806 Msa1201640:intron 35.0%
! GATTTTTACATCCGAGTCTT+GGG - chr8_1:54803788-54803807 Msa1201640:intron 35.0%
TTTATAGAAGGAAGGAAGGA+AGG + chr8_1:54803933-54803952 None:intergenic 35.0%
! GGGAAGTTTTTATAGAAGGA+AGG + chr8_1:54803941-54803960 None:intergenic 35.0%
! AGGAGGGAAGTTTTTATAGA+AGG + chr8_1:54803945-54803964 None:intergenic 35.0%
TTTATTTGCGCGAAACTTCT+GGG - chr8_1:54803988-54804007 Msa1201640:intron 35.0%
!!! ACACCTATTTTTACTGGTGA+TGG - chr8_1:54804040-54804059 Msa1201640:intron 35.0%
TCTCCATCACCAGTAAAAAT+AGG + chr8_1:54804046-54804065 None:intergenic 35.0%
!!! ATTTTTACTGGTGATGGAGA+AGG - chr8_1:54804046-54804065 Msa1201640:intron 35.0%
! GGTGTATCTGGATATGATTT+TGG - chr8_1:54804112-54804131 Msa1201640:intron 35.0%
!! ATCTGGATATGATTTTGGTG+TGG - chr8_1:54804117-54804136 Msa1201640:intron 35.0%
AACAAAGCAAAGGACAAAAC+AGG + chr8_1:54804366-54804385 None:intergenic 35.0%
TATTAGTGCATGAGTCATGA+TGG + chr8_1:54804422-54804441 None:intergenic 35.0%
TCATGACTCATGCACTAATA+TGG - chr8_1:54804422-54804441 Msa1201640:intron 35.0%
CATGACTCATGCACTAATAT+GGG - chr8_1:54804423-54804442 Msa1201640:intron 35.0%
GAAAAATGCAACATCTCCAA+GGG + chr8_1:54804496-54804515 None:intergenic 35.0%
! AACTGATTCAAACGGAAATC+CGG + chr8_1:54804742-54804761 None:intergenic 35.0%
ACTAGTACTGCAACATGATA+CGG + chr8_1:54804811-54804830 None:intergenic 35.0%
ATCATCCATTGACATTGCAA+GGG + chr8_1:54804917-54804936 None:intergenic 35.0%
ATGTTGCATGATGATTGATC+TGG - chr8_1:54805112-54805131 Msa1201640:intron 35.0%
GGTATCACTTCATTGAACAT+GGG - chr8_1:54805229-54805248 Msa1201640:intron 35.0%
!!! AGCCAACTCATAGTTTTTTG+AGG - chr8_1:54805281-54805300 Msa1201640:intron 35.0%
!!! GCCAACTCATAGTTTTTTGA+GGG - chr8_1:54805282-54805301 Msa1201640:intron 35.0%
ACCCTCAAAAAACTATGAGT+TGG + chr8_1:54805286-54805305 None:intergenic 35.0%
!!! CTCATAGTTTTTTGAGGGTT+TGG - chr8_1:54805287-54805306 Msa1201640:intron 35.0%
TTATCAGACATACTGTTGCA+AGG + chr8_1:54805509-54805528 None:intergenic 35.0%
! TGCCATAGGCAATTTTTGAA+GGG - chr8_1:54805618-54805637 Msa1201640:intron 35.0%
ATCCCTTCAAAAATTGCCTA+TGG + chr8_1:54805623-54805642 None:intergenic 35.0%
TATCATTCCACTAATCAGTG+TGG + chr8_1:54805716-54805735 None:intergenic 35.0%
! TTTAGAACCATAGTTGTTGG+TGG - chr8_1:54806064-54806083 Msa1201640:intron 35.0%
! TCACTTAAAGCACCATATAG+AGG + chr8_1:54806233-54806252 None:intergenic 35.0%
TCATAAGAAGAATGAAGAGG+AGG - chr8_1:54806457-54806476 Msa1201640:intron 35.0%
CATAAGAAGAATGAAGAGGA+GGG - chr8_1:54806458-54806477 Msa1201640:intron 35.0%
CAAGAATACTACTCCTCATT+TGG + chr8_1:54806485-54806504 None:intergenic 35.0%
AATACCAATGTGTCTGTCAA+AGG + chr8_1:54806534-54806553 None:intergenic 35.0%
TTTGACAGACACATTGGTAT+TGG - chr8_1:54806533-54806552 Msa1201640:intron 35.0%
!! CATTGGTATTGGTAACATGT+TGG - chr8_1:54806544-54806563 Msa1201640:intron 35.0%
AAGAAGCCTGTTATCATTGA+AGG - chr8_1:54806659-54806678 Msa1201640:intron 35.0%
!!! GGTTTTTAGTTTACAAGCAG+AGG - chr8_1:54806795-54806814 Msa1201640:intron 35.0%
! TTCATACTTAAGAGCATAGG+AGG - chr8_1:54806925-54806944 Msa1201640:intron 35.0%
TATCTTAACATGTGCCTTGA+GGG + chr8_1:54806983-54807002 None:intergenic 35.0%
ACGTGCATTCAACTTCTTAA+AGG - chr8_1:54807031-54807050 Msa1201640:CDS 35.0%
TCATCCTTACTATTACCCAA+AGG + chr8_1:54807170-54807189 None:intergenic 35.0%
!!! TGAGAGTGTTTTTGAAAGGA+GGG + chr8_1:54807388-54807407 None:intergenic 35.0%
!!! TTGAGAGTGTTTTTGAAAGG+AGG + chr8_1:54807389-54807408 None:intergenic 35.0%
AAAGTTATGTGTGTGTGAAC+AGG + chr8_1:54807675-54807694 None:intergenic 35.0%
AGAATTAGATTCCTAGTTGG+TGG + chr8_1:54807813-54807832 None:intergenic 35.0%
AATTTGTCCGCGTCATATAT+AGG + chr8_1:54807961-54807980 None:intergenic 35.0%
!! TATTTTGGGTCAGATATTCC+GGG + chr8_1:54807995-54808014 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - chr8_1:54808178-54808197 Msa1201640:intron 35.0%
! AATTGATCGATAGTCGACTT+TGG + chr8_1:54808308-54808327 None:intergenic 35.0%
!!! AGAAGAATTTTAGGGTGAGA+GGG + chr8_1:54808418-54808437 None:intergenic 35.0%
!!! TAGAAGAATTTTAGGGTGAG+AGG + chr8_1:54808419-54808438 None:intergenic 35.0%
!! ACGTTTATTTTCCTCTACTG+GGG + chr8_1:54808486-54808505 None:intergenic 35.0%
!! TTGGAACACTCCTTTTAAGA+GGG + chr8_1:54808554-54808573 None:intergenic 35.0%
!! TTTGGAACACTCCTTTTAAG+AGG + chr8_1:54808555-54808574 None:intergenic 35.0%
!!! GGCATACGTTAGTTTTTAGA+AGG + chr8_1:54808626-54808645 None:intergenic 35.0%
! TTATATGCAAGCAGCTTGTT+TGG - chr8_1:54808753-54808772 Msa1201640:intron 35.0%
! TATATGCAAGCAGCTTGTTT+GGG - chr8_1:54808754-54808773 Msa1201640:intron 35.0%
TAGAGTAGAAAAAGGAAAGG+GGG + chr8_1:54808816-54808835 None:intergenic 35.0%
GTAGAGTAGAAAAAGGAAAG+GGG + chr8_1:54808817-54808836 None:intergenic 35.0%
CGTAGAGTAGAAAAAGGAAA+GGG + chr8_1:54808818-54808837 None:intergenic 35.0%
! CCTTTCCTTTTTCTACTCTA+CGG - chr8_1:54808816-54808835 Msa1201640:CDS 35.0%
TTGATCAGTTGACTGAATAG+GGG + chr8_1:54808863-54808882 None:intergenic 35.0%
CTTGATCAGTTGACTGAATA+GGG + chr8_1:54808864-54808883 None:intergenic 35.0%
TCTTGATCAGTTGACTGAAT+AGG + chr8_1:54808865-54808884 None:intergenic 35.0%
CGATGTTAAACATTCCATAC+AGG + chr8_1:54808890-54808909 None:intergenic 35.0%
AATTGATCGAATTGCAGTGG+AGG + chr8_1:54801438-54801457 None:intergenic 40.0%
CCTAATTGATCGAATTGCAG+TGG + chr8_1:54801441-54801460 None:intergenic 40.0%
CCACTGCAATTCGATCAATT+AGG - chr8_1:54801438-54801457 Msa1201640:intron 40.0%
GATTGAGCTTGAAATCGAGA+AGG + chr8_1:54801557-54801576 None:intergenic 40.0%
! TATTTGCGGTGCTAAAACTC+AGG - chr8_1:54801592-54801611 Msa1201640:intron 40.0%
TACTGTTGGAGTTATGACCA+TGG - chr8_1:54801778-54801797 Msa1201640:intron 40.0%
! TTTTGCCCAAATCACTGGTA+GGG + chr8_1:54801832-54801851 None:intergenic 40.0%
! ATTTTGCCCAAATCACTGGT+AGG + chr8_1:54801833-54801852 None:intergenic 40.0%
! CAAGATTTTGCCCAAATCAC+TGG + chr8_1:54801837-54801856 None:intergenic 40.0%
! CAGTGATTTGGGCAAAATCT+TGG - chr8_1:54801835-54801854 Msa1201640:intron 40.0%
ATGCTATGTTGGAGGAAATC+TGG - chr8_1:54801922-54801941 Msa1201640:intron 40.0%
TGGTTACAATGTAGGATGGT+GGG - chr8_1:54801942-54801961 Msa1201640:intron 40.0%
AATTATGCGGTTGTCGAAAC+AGG + chr8_1:54801985-54802004 None:intergenic 40.0%
AAGCACTTGTGAGACTGTTT+GGG + chr8_1:54802195-54802214 None:intergenic 40.0%
TAAGCACTTGTGAGACTGTT+TGG + chr8_1:54802196-54802215 None:intergenic 40.0%
AACAGTCTCACAAGTGCTTA+TGG - chr8_1:54802196-54802215 Msa1201640:intron 40.0%
AAAAACACTTGGGGTCCATT+TGG + chr8_1:54802248-54802267 None:intergenic 40.0%
TCAAATAAGGCAATCCAAGC+AGG - chr8_1:54802352-54802371 Msa1201640:intron 40.0%
! TTAGGTTGTGGAAGTTTGTC+AGG - chr8_1:54802448-54802467 Msa1201640:intron 40.0%
TTTGTCAGGTTCTGCTATCT+AGG - chr8_1:54802462-54802481 Msa1201640:intron 40.0%
TTGTCAGGTTCTGCTATCTA+GGG - chr8_1:54802463-54802482 Msa1201640:intron 40.0%
! TCTGCTATCTAGGGTCTATT+TGG - chr8_1:54802472-54802491 Msa1201640:intron 40.0%
ACTTATTTGAGCTTATCGGC+TGG - chr8_1:54802499-54802518 Msa1201640:intron 40.0%
GGTATAAGCACTTGTGAGAT+AGG - chr8_1:54802520-54802539 Msa1201640:intron 40.0%
ATTACACTTTCATCTGGGGA+TGG - chr8_1:54802806-54802825 Msa1201640:intron 40.0%
TCTTCCTCAGGTCTAGAAAT+AGG - chr8_1:54802939-54802958 Msa1201640:intron 40.0%
AGAATAAGAAGCAGCAGCAA+AGG - chr8_1:54803021-54803040 Msa1201640:intron 40.0%
! GGATTGTTGTCTTTTGTGGA+AGG - chr8_1:54803042-54803061 Msa1201640:intron 40.0%
TCCCCTCCCATAATCTAATT+TGG - chr8_1:54803140-54803159 Msa1201640:intron 40.0%
GCACCAAATTAGATTATGGG+AGG + chr8_1:54803146-54803165 None:intergenic 40.0%
GCACTTGACATTGTCAACTT+TGG - chr8_1:54803240-54803259 Msa1201640:intron 40.0%
! CAACTTTGGAGAAGAAGATG+AGG - chr8_1:54803254-54803273 Msa1201640:intron 40.0%
! ACTTTGGAGAAGAAGATGAG+GGG - chr8_1:54803256-54803275 Msa1201640:intron 40.0%
CTCTGTCGGATGTACTTATA+AGG - chr8_1:54803364-54803383 Msa1201640:intron 40.0%
ACGGCATTCCCATTTGAATT+GGG - chr8_1:54803437-54803456 Msa1201640:intron 40.0%
AGAGTTGAGTAGAAACAGCA+GGG + chr8_1:54803516-54803535 None:intergenic 40.0%
!! AGGAGTACTGGAAGAATTCA+TGG + chr8_1:54803649-54803668 None:intergenic 40.0%
CCTAGAGATGAAAACAACCA+TGG + chr8_1:54803821-54803840 None:intergenic 40.0%
!! CCATGGTTGTTTTCATCTCT+AGG - chr8_1:54803818-54803837 Msa1201640:intron 40.0%
!! GGTTGTTTTCATCTCTAGGT+TGG - chr8_1:54803822-54803841 Msa1201640:intron 40.0%
GTTTATTTGCGCGAAACTTC+TGG - chr8_1:54803987-54804006 Msa1201640:intron 40.0%
!!! GGCAGTACACCTATTTTTAC+TGG - chr8_1:54804034-54804053 Msa1201640:intron 40.0%
!! TTTTGGTGTGGATCCAAACT+TGG - chr8_1:54804129-54804148 Msa1201640:intron 40.0%
TCAGAGCAAGAGCTAATTCA+GGG + chr8_1:54804156-54804175 None:intergenic 40.0%
!! TCTTGCTCTGAGAGTTTCAA+TGG - chr8_1:54804165-54804184 Msa1201640:intron 40.0%
TCTGAGAGTTTCAATGGAAG+AGG - chr8_1:54804171-54804190 Msa1201640:intron 40.0%
TTACATCCCATAACTACCCT+TGG - chr8_1:54804477-54804496 Msa1201640:intron 40.0%
ACATCTCCAAGGGTAGTTAT+GGG + chr8_1:54804486-54804505 None:intergenic 40.0%
AACATCTCCAAGGGTAGTTA+TGG + chr8_1:54804487-54804506 None:intergenic 40.0%
GGAAAAATGCAACATCTCCA+AGG + chr8_1:54804497-54804516 None:intergenic 40.0%
! GAGATGTTGCATTTTTCCGT+TGG - chr8_1:54804499-54804518 Msa1201640:intron 40.0%
AATATATGCTGGTGAGCCAA+CGG + chr8_1:54804518-54804537 None:intergenic 40.0%
TGTAAATGCTATGGGTACAG+AGG - chr8_1:54804585-54804604 Msa1201640:intron 40.0%
!!! GACACTTTTTCTGTGTGAAC+TGG - chr8_1:54804847-54804866 Msa1201640:intron 40.0%
TGAGAATGCTCTTCTACAAC+AGG - chr8_1:54804891-54804910 Msa1201640:intron 40.0%
GATCATCCATTGACATTGCA+AGG + chr8_1:54804918-54804937 None:intergenic 40.0%
TATCTGCATCTCTTCCATCA+TGG + chr8_1:54804951-54804970 None:intergenic 40.0%
! CATGATGATTGATCTGGTTC+TGG - chr8_1:54805118-54805137 Msa1201640:intron 40.0%
GGGTATCACTTCATTGAACA+TGG - chr8_1:54805228-54805247 Msa1201640:intron 40.0%
TGAACATGGGATGCTTTGTA+TGG - chr8_1:54805242-54805261 Msa1201640:intron 40.0%
TGAATAGTTGCCTTCTCTTC+TGG - chr8_1:54805323-54805342 Msa1201640:intron 40.0%
GAATAGTTGCCTTCTCTTCT+GGG - chr8_1:54805324-54805343 Msa1201640:intron 40.0%
ACAACTTATCCCAGAAGAGA+AGG + chr8_1:54805336-54805355 None:intergenic 40.0%
TGCAAGGACATGAGATACAA+AGG + chr8_1:54805493-54805512 None:intergenic 40.0%
! CTGCCATAGGCAATTTTTGA+AGG - chr8_1:54805617-54805636 Msa1201640:intron 40.0%
TATAAACATGCTGCTGCCTA+TGG + chr8_1:54805662-54805681 None:intergenic 40.0%
TAGGCAGCAGCATGTTTATA+TGG - chr8_1:54805662-54805681 Msa1201640:intron 40.0%
CTTTGACAGATGGGTCATTT+GGG + chr8_1:54805796-54805815 None:intergenic 40.0%
TCTTTGACAGATGGGTCATT+TGG + chr8_1:54805797-54805816 None:intergenic 40.0%
CCAGCAAATCTTTGACAGAT+GGG + chr8_1:54805805-54805824 None:intergenic 40.0%
!! TACGTTGGACTGATTTTGCA+TGG + chr8_1:54805831-54805850 None:intergenic 40.0%
GCAAATACCACTGGGTTTAA+AGG - chr8_1:54805866-54805885 Msa1201640:intron 40.0%
TGAAGTTCCTTTAAACCCAG+TGG + chr8_1:54805876-54805895 None:intergenic 40.0%
! TGATTGAATTTGGCTTCACC+TGG - chr8_1:54805917-54805936 Msa1201640:intron 40.0%
ATGGAGCTCAAAATCAATCC+AGG + chr8_1:54805938-54805957 None:intergenic 40.0%
TCTGTATTGTCGTCTACCTA+TGG - chr8_1:54806033-54806052 Msa1201640:intron 40.0%
CATTCTTCTTATGAGCCTGA+TGG + chr8_1:54806451-54806470 None:intergenic 40.0%
GGCTCATAAGAAGAATGAAG+AGG - chr8_1:54806454-54806473 Msa1201640:intron 40.0%
TGTTCCTTTGACAGACACAT+TGG - chr8_1:54806527-54806546 Msa1201640:intron 40.0%
!! GGTATTGGTAACATGTTGGT+TGG - chr8_1:54806548-54806567 Msa1201640:intron 40.0%
! ATTGGTAACATGTTGGTTGG+TGG - chr8_1:54806551-54806570 Msa1201640:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - chr8_1:54806966-54806985 Msa1201640:intron 40.0%
GTATCTTAACATGTGCCTTG+AGG + chr8_1:54806984-54807003 None:intergenic 40.0%
TTGCTTAACATGTGCCCTAA+GGG - chr8_1:54807096-54807115 Msa1201640:CDS 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG + chr8_1:54807113-54807132 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG + chr8_1:54807114-54807133 None:intergenic 40.0%
ATGGGAAAACTCTCAAGCAA+GGG + chr8_1:54807436-54807455 None:intergenic 40.0%
GAAAGAGGTGAAAACAGAGA+CGG + chr8_1:54807519-54807538 None:intergenic 40.0%
AAGAAAGTCTCACGAGAAAG+AGG + chr8_1:54807534-54807553 None:intergenic 40.0%
GTAGTGTGCGTGAAAACAAA+AGG + chr8_1:54807584-54807603 None:intergenic 40.0%
CAGTAATGCATATTCCTCGA+CGG + chr8_1:54807846-54807865 None:intergenic 40.0%
! CCAAACTGGCTCAAATATTC+CGG - chr8_1:54808192-54808211 Msa1201640:intron 40.0%
! CAAACTGGCTCAAATATTCC+GGG - chr8_1:54808193-54808212 Msa1201640:intron 40.0%
!!! AAGAATTTTAGGGTGAGAGG+GGG + chr8_1:54808416-54808435 None:intergenic 40.0%
!!! GAAGAATTTTAGGGTGAGAG+GGG + chr8_1:54808417-54808436 None:intergenic 40.0%
!! TGTCTATTTTTCCCCAGTAG+AGG - chr8_1:54808472-54808491 Msa1201640:intron 40.0%
CTAGAAAGGTCCCTCTTAAA+AGG - chr8_1:54808541-54808560 Msa1201640:CDS 40.0%
!! GTTTTTAGAAGGGTCCTCTA+GGG + chr8_1:54808615-54808634 None:intergenic 40.0%
!! AGTTTTTAGAAGGGTCCTCT+AGG + chr8_1:54808616-54808635 None:intergenic 40.0%
TTCGCTATGTGATCATCACA+CGG - chr8_1:54808696-54808715 Msa1201640:intron 40.0%
ACTTCCACCTCAAATAAGCA+CGG + chr8_1:54808724-54808743 None:intergenic 40.0%
AGAGTAGAAAAAGGAAAGGG+GGG + chr8_1:54808815-54808834 None:intergenic 40.0%
CCGTAGAGTAGAAAAAGGAA+AGG + chr8_1:54808819-54808838 None:intergenic 40.0%
CTACACCGTAGAGTAGAAAA+AGG + chr8_1:54808824-54808843 None:intergenic 40.0%
AACTGATCAAGACACCTGTA+TGG - chr8_1:54808873-54808892 Msa1201640:CDS 40.0%
TCCTGATGTTTGAGAAGGAA+GGG + chr8_1:54808949-54808968 None:intergenic 40.0%
TGAAAGATATGATGCCAAGG+AGG + chr8_1:54808983-54809002 None:intergenic 40.0%
TGTGTGGTATTGTTGGAGAT+AGG + chr8_1:54809037-54809056 None:intergenic 40.0%
CTGTACATGTGTGGTATTGT+TGG + chr8_1:54809044-54809063 None:intergenic 40.0%
! CTTTTGGTACTGTACATGTG+TGG + chr8_1:54809053-54809072 None:intergenic 40.0%
! AGCATCTGTTAGCTCTTCTT+TGG - chr8_1:54809094-54809113 Msa1201640:five_prime_UTR 40.0%
!! TGAATTGAAGGTGCTTGCGA+AGG + chr8_1:54801283-54801302 None:intergenic 45.0%
TCTACCCCTACCAGTGATTT+GGG - chr8_1:54801824-54801843 Msa1201640:intron 45.0%
TTTGCCCAAATCACTGGTAG+GGG + chr8_1:54801831-54801850 None:intergenic 45.0%
AGTGCTCTATGCTATGTTGG+AGG - chr8_1:54801914-54801933 Msa1201640:intron 45.0%
CTGGTTACAATGTAGGATGG+TGG - chr8_1:54801941-54801960 Msa1201640:intron 45.0%
!! ACGCACTTGTGAGAGTGTTT+GGG + chr8_1:54802316-54802335 None:intergenic 45.0%
!! TACGCACTTGTGAGAGTGTT+TGG + chr8_1:54802317-54802336 None:intergenic 45.0%
TCCTCAGGTCTAGAAATAGG+CGG - chr8_1:54802942-54802961 Msa1201640:intron 45.0%
! CACAGTTGGCTCTTAAGCAT+CGG - chr8_1:54802997-54803016 Msa1201640:intron 45.0%
! AGTACATCCGACAGAGCATT+TGG + chr8_1:54803360-54803379 None:intergenic 45.0%
CACGGCATTCCCATTTGAAT+TGG - chr8_1:54803436-54803455 Msa1201640:intron 45.0%
CAGAGTTGAGTAGAAACAGC+AGG + chr8_1:54803517-54803536 None:intergenic 45.0%
ATCAACCCAGTTAGCACTAC+TGG - chr8_1:54803692-54803711 Msa1201640:intron 45.0%
ATGGCTAAACACCCAAGACT+CGG + chr8_1:54803802-54803821 None:intergenic 45.0%
CTAGAGGGGGGAAAAACAAA+CGG + chr8_1:54803858-54803877 None:intergenic 45.0%
!! TTTACTGGTGATGGAGAAGG+TGG - chr8_1:54804049-54804068 Msa1201640:intron 45.0%
GCTAATTCAGGGTCCAAGTT+TGG + chr8_1:54804145-54804164 None:intergenic 45.0%
CTCAGAGCAAGAGCTAATTC+AGG + chr8_1:54804157-54804176 None:intergenic 45.0%
GATGCTTCCAAACAGGAGAA+AGG - chr8_1:54804235-54804254 Msa1201640:intron 45.0%
TAGTGCATGAGTCATGATGG+TGG + chr8_1:54804419-54804438 None:intergenic 45.0%
GATCCTGCAGTTAACCATGA+TGG - chr8_1:54804934-54804953 Msa1201640:intron 45.0%
CTTCCATCATGGTTAACTGC+AGG + chr8_1:54804940-54804959 None:intergenic 45.0%
GGACGAAGTGACTAGATTGT+TGG - chr8_1:54805458-54805477 Msa1201640:CDS 45.0%
CGAAGTGACTAGATTGTTGG+CGG - chr8_1:54805461-54805480 Msa1201640:CDS 45.0%
TTAAATGGCGGCAATTGCAG+TGG - chr8_1:54805580-54805599 Msa1201640:intron 45.0%
!! TTTTGAAGGGATACCCACCA+TGG - chr8_1:54805631-54805650 Msa1201640:intron 45.0%
GCAGCAGCATGTTTATATGG+TGG - chr8_1:54805665-54805684 Msa1201640:intron 45.0%
CTAATCAGTGTGGTCAATGG+CGG + chr8_1:54805706-54805725 None:intergenic 45.0%
CCACTAATCAGTGTGGTCAA+TGG + chr8_1:54805709-54805728 None:intergenic 45.0%
! CCATTGACCACACTGATTAG+TGG - chr8_1:54805706-54805725 Msa1201640:intron 45.0%
!! TCTTTGTTTCTGCAGCTTCC+TGG - chr8_1:54805764-54805783 Msa1201640:intron 45.0%
!! CTTTGTTTCTGCAGCTTCCT+GGG - chr8_1:54805765-54805784 Msa1201640:intron 45.0%
!! TTTGTTTCTGCAGCTTCCTG+GGG - chr8_1:54805766-54805785 Msa1201640:intron 45.0%
CCCATCTGTCAAAGATTTGC+TGG - chr8_1:54805802-54805821 Msa1201640:intron 45.0%
GCCAGCAAATCTTTGACAGA+TGG + chr8_1:54805806-54805825 None:intergenic 45.0%
!! GTTGGTTGGTGGTTCTAATG+TGG - chr8_1:54806562-54806581 Msa1201640:intron 45.0%
ACATCTGTTCCAGTAAGCCA+GGG + chr8_1:54806621-54806640 None:intergenic 45.0%
TACATCTGTTCCAGTAAGCC+AGG + chr8_1:54806622-54806641 None:intergenic 45.0%
! CTGATACGTGACCTTTTCTG+TGG - chr8_1:54806827-54806846 Msa1201640:intron 45.0%
AAGAGAGACGACCACAGAAA+AGG + chr8_1:54806841-54806860 None:intergenic 45.0%
GTTGCTTAACATGTGCCCTA+AGG - chr8_1:54807095-54807114 Msa1201640:CDS 45.0%
ATTTAGGCTCTGTTTAGGGG+TGG - chr8_1:54807144-54807163 Msa1201640:CDS 45.0%
GTGGCCTTTGGGTAATAGTA+AGG - chr8_1:54807163-54807182 Msa1201640:CDS 45.0%
GATTGGAGAAGCTCTTTGCA+GGG - chr8_1:54807285-54807304 Msa1201640:intron 45.0%
AGAAGCTCTTTGCAGGGTTT+AGG - chr8_1:54807291-54807310 Msa1201640:intron 45.0%
GATGGGAAAACTCTCAAGCA+AGG + chr8_1:54807437-54807456 None:intergenic 45.0%
GAATCTCGAGGAGAATGGAT+GGG + chr8_1:54807454-54807473 None:intergenic 45.0%
AGAATCTCGAGGAGAATGGA+TGG + chr8_1:54807455-54807474 None:intergenic 45.0%
CACTAGAATCTCGAGGAGAA+TGG + chr8_1:54807459-54807478 None:intergenic 45.0%
TTCTAAACTATCTGCCGTCG+AGG - chr8_1:54807829-54807848 Msa1201640:intron 45.0%
CCGGAATATTTGAGCCAGTT+TGG + chr8_1:54808195-54808214 None:intergenic 45.0%
! TGATCGATAGTCGACTTTGG+AGG + chr8_1:54808305-54808324 None:intergenic 45.0%
CTAATATTGCAGAGCCCTAG+AGG - chr8_1:54808598-54808617 Msa1201640:CDS 45.0%
GTTTATGCACTAGCCGATGT+GGG - chr8_1:54808776-54808795 Msa1201640:intron 45.0%
GAGTAGAAAAAGGAAAGGGG+GGG + chr8_1:54808814-54808833 None:intergenic 45.0%
CCTGATGTTTGAGAAGGAAG+GGG + chr8_1:54808948-54808967 None:intergenic 45.0%
CTCCTGATGTTTGAGAAGGA+AGG + chr8_1:54808950-54808969 None:intergenic 45.0%
TATGATGCCAAGGAGGATGA+AGG + chr8_1:54808976-54808995 None:intergenic 45.0%
!! TTTAAATAAAATAATTTAGT+AGG + chr8_1:54805533-54805552 None:intergenic 5.0%
!! AAATAAAAAACAATAATAAA+TGG + chr8_1:54806773-54806792 None:intergenic 5.0%
!!! TTATTATTGTTTTTTATTTA+AGG - chr8_1:54806774-54806793 Msa1201640:intron 5.0%
!! ATTGAAGGTGCTTGCGAAGG+AGG + chr8_1:54801280-54801299 None:intergenic 50.0%
CTTTCCAACAATGGTGCTCG+AGG - chr8_1:54801367-54801386 Msa1201640:intron 50.0%
GTTACCTCGAGCACCATTGT+TGG + chr8_1:54801374-54801393 None:intergenic 50.0%
GTTGGAGTTATGACCATGGC+CGG - chr8_1:54801782-54801801 Msa1201640:intron 50.0%
TTGGAGTTATGACCATGGCC+GGG - chr8_1:54801783-54801802 Msa1201640:intron 50.0%
CAAAACTCGAACTCCCTTCC+CGG + chr8_1:54801804-54801823 None:intergenic 50.0%
GTCTACCCCTACCAGTGATT+TGG - chr8_1:54801823-54801842 Msa1201640:intron 50.0%
CACTTGGGGTCCATTTGGAT+TGG + chr8_1:54802243-54802262 None:intergenic 50.0%
AATAACACTTGGGGCCTGCT+TGG + chr8_1:54802369-54802388 None:intergenic 50.0%
! TGCATCGGCAGCTATGTGTA+TGG - chr8_1:54802742-54802761 Msa1201640:intron 50.0%
!! ACCGCCTATTTCTAGACCTG+AGG + chr8_1:54802946-54802965 None:intergenic 50.0%
AAACCTAGCTGCTGCCATTC+AGG - chr8_1:54802971-54802990 Msa1201640:intron 50.0%
CAGGTGGAACATGAACCATG+TGG + chr8_1:54803335-54803354 None:intergenic 50.0%
CACATGGTTCATGTTCCACC+TGG - chr8_1:54803333-54803352 Msa1201640:intron 50.0%
ACCTGGTCCAAATGCTCTGT+CGG - chr8_1:54803350-54803369 Msa1201640:intron 50.0%
GCATGCCAGTAGTGCTAACT+GGG + chr8_1:54803700-54803719 None:intergenic 50.0%
AGCATGCCAGTAGTGCTAAC+TGG + chr8_1:54803701-54803720 None:intergenic 50.0%
GAGTCTTGGGTGTTTAGCCA+TGG - chr8_1:54803801-54803820 Msa1201640:intron 50.0%
GGGGAAAAACAAACGGAGCA+AGG + chr8_1:54803851-54803870 None:intergenic 50.0%
AGGTGTACTGCCACAACACA+AGG + chr8_1:54804026-54804045 None:intergenic 50.0%
TGCAGAGGATGCTTCCAAAC+AGG - chr8_1:54804228-54804247 Msa1201640:intron 50.0%
GCTTCCAAACAGGAGAAAGG+CGG - chr8_1:54804238-54804257 Msa1201640:intron 50.0%
CTCGGTCATAGTTGCATCCT+GGG + chr8_1:54804281-54804300 None:intergenic 50.0%
!! AGCTTCTGTACTGGTTCGCT+CGG + chr8_1:54804299-54804318 None:intergenic 50.0%
CATAGGCTCAGCTTCTGTAC+TGG + chr8_1:54804308-54804327 None:intergenic 50.0%
CAGTACAGAAGCTGAGCCTA+TGG - chr8_1:54804306-54804325 Msa1201640:intron 50.0%
!! TGTGTGAACTGGCTTTCACG+TGG - chr8_1:54804858-54804877 Msa1201640:intron 50.0%
!! AACTGGCTTTCACGTGGAAC+AGG - chr8_1:54804864-54804883 Msa1201640:intron 50.0%
ACAGGCCCTTGCAATGTCAA+TGG - chr8_1:54804909-54804928 Msa1201640:intron 50.0%
AGCTACAGATGACCCTGAGT+TGG - chr8_1:54804981-54805000 Msa1201640:intron 50.0%
GTCAGTATCAGACACCACCA+CGG - chr8_1:54805437-54805456 Msa1201640:CDS 50.0%
CAATCTAGTCACTTCGTCCG+TGG + chr8_1:54805457-54805476 None:intergenic 50.0%
AGACGCGACGAGAGATGAAA+TGG + chr8_1:54805957-54805976 None:intergenic 50.0%
TGAAGAGGAGGGACCAAATG+AGG - chr8_1:54806469-54806488 Msa1201640:intron 50.0%
ACTGCAGTTATGAGTCTCCC+TGG - chr8_1:54806601-54806620 Msa1201640:intron 50.0%
TATGAGTCTCCCTGGCTTAC+TGG - chr8_1:54806609-54806628 Msa1201640:intron 50.0%
GTGGTCGTCTCTCTTGCTAA+AGG - chr8_1:54806846-54806865 Msa1201640:intron 50.0%
TCTGTTTAGGGGTGGCCTTT+GGG - chr8_1:54807152-54807171 Msa1201640:CDS 50.0%
GGATTGGAGAAGCTCTTTGC+AGG - chr8_1:54807284-54807303 Msa1201640:intron 50.0%
TCCTCGAGATTCTAGTGACG+TGG - chr8_1:54807462-54807481 Msa1201640:intron 50.0%
TCCACGTCACTAGAATCTCG+AGG + chr8_1:54807466-54807485 None:intergenic 50.0%
GTGTGAACAGGACTAGAGAC+AGG + chr8_1:54807663-54807682 None:intergenic 50.0%
ACAAATTACTCCCTCCGTCC+CGG - chr8_1:54807974-54807993 Msa1201640:intron 50.0%
TTGGGTCAGATATTCCGGGA+CGG + chr8_1:54807991-54808010 None:intergenic 50.0%
CTGGCTCAAATATTCCGGGA+CGG - chr8_1:54808197-54808216 Msa1201640:intron 50.0%
CTCAAATATTCCGGGACGGA+GGG - chr8_1:54808201-54808220 Msa1201640:intron 50.0%
ATGATATACTCCCTCCGTCC+CGG + chr8_1:54808214-54808233 None:intergenic 50.0%
!!! AATTTTAGGGTGAGAGGGGG+AGG + chr8_1:54808413-54808432 None:intergenic 50.0%
CGTGTGAGCGTCACAATTAG+CGG + chr8_1:54808647-54808666 None:intergenic 50.0%
CGCTAATTGTGACGCTCACA+CGG - chr8_1:54808645-54808664 Msa1201640:intron 50.0%
CACGGATCCGTGCTTATTTG+AGG - chr8_1:54808714-54808733 Msa1201640:intron 50.0%
GGATCCGTGCTTATTTGAGG+TGG - chr8_1:54808717-54808736 Msa1201640:intron 50.0%
GGTTTATGCACTAGCCGATG+TGG - chr8_1:54808775-54808794 Msa1201640:intron 50.0%
GTCTGGCTAAAGTCCCACAT+CGG + chr8_1:54808792-54808811 None:intergenic 50.0%
CCCCTTCCTTCTCAAACATC+AGG - chr8_1:54808945-54808964 Msa1201640:intron 50.0%
GAGGCTCCTGATGTTTGAGA+AGG + chr8_1:54808954-54808973 None:intergenic 50.0%
AGTTATGACCATGGCCGGGA+AGG - chr8_1:54801787-54801806 Msa1201640:intron 55.0%
GTTATGACCATGGCCGGGAA+GGG - chr8_1:54801788-54801807 Msa1201640:intron 55.0%
TGGCAAGTGCCACACTGTCA+TGG - chr8_1:54802762-54802781 Msa1201640:intron 55.0%
GGCAAGTGCCACACTGTCAT+GGG - chr8_1:54802763-54802782 Msa1201640:intron 55.0%
GCAAGTGCCACACTGTCATG+GGG - chr8_1:54802764-54802783 Msa1201640:intron 55.0%
CATCCATCCCCATGACAGTG+TGG + chr8_1:54802774-54802793 None:intergenic 55.0%
CACACTGTCATGGGGATGGA+TGG - chr8_1:54802772-54802791 Msa1201640:intron 55.0%
TGCCATTCAGGTGGCACAGT+TGG - chr8_1:54802983-54803002 Msa1201640:intron 55.0%
AGCCAACTGTGCCACCTGAA+TGG + chr8_1:54802988-54803007 None:intergenic 55.0%
TGAGGGGAAGACAGAGAAGC+TGG - chr8_1:54803272-54803291 Msa1201640:intron 55.0%
! GACAGAGCATTTGGACCAGG+TGG + chr8_1:54803351-54803370 None:intergenic 55.0%
! TCCGACAGAGCATTTGGACC+AGG + chr8_1:54803354-54803373 None:intergenic 55.0%
!! GGTGATGGAGAAGGTGGAAG+CGG - chr8_1:54804055-54804074 Msa1201640:intron 55.0%
TCCAGATACACCACCTGCAG+AGG + chr8_1:54804104-54804123 None:intergenic 55.0%
CAATGGAAGAGGAGAGAGCC+AGG - chr8_1:54804182-54804201 Msa1201640:intron 55.0%
GCAGGAAGCAGCTGCGAAAA+AGG - chr8_1:54804204-54804223 Msa1201640:intron 55.0%
AGCTGCGAAAAAGGCTGCAG+AGG - chr8_1:54804213-54804232 Msa1201640:intron 55.0%
CTCACCGCCTTTCTCCTGTT+TGG + chr8_1:54804245-54804264 None:intergenic 55.0%
TGAGCAGCAAGCTACTTCCC+AGG - chr8_1:54804261-54804280 Msa1201640:intron 55.0%
GCTCGGTCATAGTTGCATCC+TGG + chr8_1:54804282-54804301 None:intergenic 55.0%
ACTCACCTCGAGCCAACTCA+GGG + chr8_1:54804996-54805015 None:intergenic 55.0%
AACTCACCTCGAGCCAACTC+AGG + chr8_1:54804997-54805016 None:intergenic 55.0%
TCTAGTCACTTCGTCCGTGG+TGG + chr8_1:54805454-54805473 None:intergenic 55.0%
! TCAGTGTGGTCAATGGCGGA+AGG + chr8_1:54805702-54805721 None:intergenic 55.0%
CTCTGTTTAGGGGTGGCCTT+TGG - chr8_1:54807151-54807170 Msa1201640:CDS 55.0%
AGAGACGGACACGAGAGAAG+AGG + chr8_1:54807504-54807523 None:intergenic 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr8_1:54807987-54808006 None:intergenic 55.0%
GCTCAAATATTCCGGGACGG+AGG - chr8_1:54808200-54808219 Msa1201640:intron 55.0%
GAAAAAGGAAAGGGGGGGTC+TGG + chr8_1:54808809-54808828 None:intergenic 55.0%
GATGCCAAGGAGGATGAAGG+AGG + chr8_1:54808973-54808992 None:intergenic 55.0%
GTGCCACACTGTCATGGGGA+TGG - chr8_1:54802768-54802787 Msa1201640:intron 60.0%
CCACCTGAATGGCAGCAGCT+AGG + chr8_1:54802977-54802996 None:intergenic 60.0%
CCTAGCTGCTGCCATTCAGG+TGG - chr8_1:54802974-54802993 Msa1201640:intron 60.0%
GCCTCTGCAGGTGGTGTATC+TGG - chr8_1:54804100-54804119 Msa1201640:intron 60.0%
TTTCGCAGCTGCTTCCTGCC+TGG + chr8_1:54804203-54804222 None:intergenic 60.0%
!! GATGACCCTGAGTTGGCTCG+AGG - chr8_1:54804988-54805007 Msa1201640:intron 60.0%
ACCCACCATGGCTGCTCCAT+AGG - chr8_1:54805643-54805662 Msa1201640:intron 60.0%
GCCTATGGAGCAGCCATGGT+GGG + chr8_1:54805647-54805666 None:intergenic 60.0%
TGCCTATGGAGCAGCCATGG+TGG + chr8_1:54805648-54805667 None:intergenic 60.0%
TGCTGCCTATGGAGCAGCCA+TGG + chr8_1:54805651-54805670 None:intergenic 60.0%
! GTGTGGTCAATGGCGGAAGG+AGG + chr8_1:54805699-54805718 None:intergenic 60.0%
GGGTCATTTGGGTCAACCCC+AGG + chr8_1:54805785-54805804 None:intergenic 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr8_1:54807988-54808007 None:intergenic 60.0%
GGAGCCTCCTTCATCCTCCT+TGG - chr8_1:54808966-54808985 Msa1201640:intron 60.0%
TCGAACTCCCTTCCCGGCCA+TGG + chr8_1:54801798-54801817 None:intergenic 65.0%
GGAAGAGGAGAGAGCCAGGC+AGG - chr8_1:54804186-54804205 Msa1201640:intron 65.0%
GCTGCAGCAGCAGCCTCTGC+AGG - chr8_1:54804088-54804107 Msa1201640:intron 70.0%
GCAGCAGCAGCCTCTGCAGG+TGG - chr8_1:54804091-54804110 Msa1201640:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 54801225 54809178 54801225 ID=Msa1201640;Name=Msa1201640
chr8_1 mRNA 54801225 54809178 54801225 ID=Msa1201640-mRNA-1;Parent=Msa1201640;Name=Msa1201640-mRNA-1;_AED=0.30;_eAED=0.31;_QI=152|0.66|0.6|0.9|0.77|0.8|10|0|345
chr8_1 exon 54801225 54801314 54801225 ID=Msa1201640-mRNA-1:exon:17747;Parent=Msa1201640-mRNA-1
chr8_1 exon 54803855 54803862 54803855 ID=Msa1201640-mRNA-1:exon:17746;Parent=Msa1201640-mRNA-1
chr8_1 exon 54805394 54805517 54805394 ID=Msa1201640-mRNA-1:exon:17745;Parent=Msa1201640-mRNA-1
chr8_1 exon 54806076 54806293 54806076 ID=Msa1201640-mRNA-1:exon:17744;Parent=Msa1201640-mRNA-1
chr8_1 exon 54806327 54806364 54806327 ID=Msa1201640-mRNA-1:exon:17743;Parent=Msa1201640-mRNA-1
chr8_1 exon 54807018 54807227 54807018 ID=Msa1201640-mRNA-1:exon:17742;Parent=Msa1201640-mRNA-1
chr8_1 exon 54807340 54807454 54807340 ID=Msa1201640-mRNA-1:exon:17741;Parent=Msa1201640-mRNA-1
chr8_1 exon 54808534 54808639 54808534 ID=Msa1201640-mRNA-1:exon:17740;Parent=Msa1201640-mRNA-1
chr8_1 exon 54808790 54808903 54808790 ID=Msa1201640-mRNA-1:exon:17739;Parent=Msa1201640-mRNA-1
chr8_1 exon 54809015 54809178 54809015 ID=Msa1201640-mRNA-1:exon:17738;Parent=Msa1201640-mRNA-1
chr8_1 five_prime_UTR 54809027 54809178 54809027 ID=Msa1201640-mRNA-1:five_prime_utr;Parent=Msa1201640-mRNA-1
chr8_1 CDS 54809015 54809026 54809015 ID=Msa1201640-mRNA-1:cds;Parent=Msa1201640-mRNA-1
chr8_1 CDS 54808790 54808903 54808790 ID=Msa1201640-mRNA-1:cds;Parent=Msa1201640-mRNA-1
chr8_1 CDS 54808534 54808639 54808534 ID=Msa1201640-mRNA-1:cds;Parent=Msa1201640-mRNA-1
chr8_1 CDS 54807340 54807454 54807340 ID=Msa1201640-mRNA-1:cds;Parent=Msa1201640-mRNA-1
chr8_1 CDS 54807018 54807227 54807018 ID=Msa1201640-mRNA-1:cds;Parent=Msa1201640-mRNA-1
chr8_1 CDS 54806327 54806364 54806327 ID=Msa1201640-mRNA-1:cds;Parent=Msa1201640-mRNA-1
chr8_1 CDS 54806076 54806293 54806076 ID=Msa1201640-mRNA-1:cds;Parent=Msa1201640-mRNA-1
chr8_1 CDS 54805394 54805517 54805394 ID=Msa1201640-mRNA-1:cds;Parent=Msa1201640-mRNA-1
chr8_1 CDS 54803855 54803862 54803855 ID=Msa1201640-mRNA-1:cds;Parent=Msa1201640-mRNA-1
chr8_1 CDS 54801225 54801314 54801225 ID=Msa1201640-mRNA-1:cds;Parent=Msa1201640-mRNA-1
Gene Sequence

>Msa1201640

ATGGTGCTCGAGGCTACACTTATCATTATGGATAACTCTGAACATATGCGTAACGGTGATTACTCTCCTTCTCGATTTCAAGCTCAATCCGACACTGTTAGTCTTATTTGCGGTGCTAAAACTCAGTCTAATCCTGAAAATACTGTTGGAGTTATGACCATGGCCGGGAAGGGAGTTCGAGTTTTGTCTACCCCTACCAGTGATTTGGGCAAAATCTTGGGTTGTATGCATGGTCTAGAAATAGGCGGTGAGATAAACCTAGCTGCTGCCATTCAGGTGGCACAGTTGGCTCTTAAGCATCGGCAGAATAAGAAGCAGCAGCAAAGGATTGTTGTCTTTTGTGGAAGTCCTGTCAAGCATGAGAAGAAAATGTTGGAGATGATTGGAAGAAAGTTGAAAAAGAATAGTGTTGCACTTGACATTGTCAACTTTGGAGAAGAAGATGAGGGGAAGACAGAGAAGCTGGAAGCACTCCTTGCAGCTGTAAACAATAATGATAGTAGCCACATGGTTCATGTTCCACCTGGTCCAAATGCTCTGTCGGATGTACTTATAAGTACACCTATTTTTACTGGTGATGGAGAAGGTGGAAGCGGTGGTGTATCTGGATATGATTTTGGTGTGGATCCAAACTTGGACCCTGAATTAGCTCTTGCTCTGAGAGTTTCAATGGAAGAGGAGAGAGCCAGGCAGGAAGCAGCTGCGAAAAAGGCTGCAGAGGATGCTTCCAAACAGGAGAAAGGCGGTGAGCAGCAAGCTACTTCCCAGGATGCAACTATGACCGAGCGAACCAGTACAGAAGCTGAGCCTATGGACGATGAGAATGCTCTTCTACAACAGGCCCTTGCAATGTCAATGGATGATCCTGCAGTTAACCATGATGGAAGAGATGCAGATATGTCTGAAGCAGCTACAGATGACCCTGAGTTGGCTCGAGACACATTGGCTGAAGCATCTGTTAGCTCTTCTTTGGCATGTCTGTCTAGTCAGCAATCAGCTGATCAATGTTCAGCACTTGCATTAGCATTTGCTCAG

Protein sequence

>Msa1201640

MVLEATLIIMDNSEHMRNGDYSPSRFQAQSDTVSLICGAKTQSNPENTVGVMTMAGKGVRVLSTPTSDLGKILGCMHGLEIGGEINLAAAIQVAQLALKHRQNKKQQQRIVVFCGSPVKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKTEKLEALLAAVNNNDSSHMVHVPPGPNALSDVLISTPIFTGDGEGGSGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDASKQEKGGEQQATSQDATMTERTSTEAEPMDDENALLQQALAMSMDDPAVNHDGRDADMSEAATDDPELARDTLAEASVSSSLACLSSQQSADQCSALALAFAQ