Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0329190 | RHN81488.1 | 77.576 | 165 | 14 | 2 | 8 | 155 | 416 | 574 | 1.70e-79 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018650 | Msa0329190 | 0.806987 | 6.298707e-50 | -8.615850e-47 |
| Msa0033420 | Msa0329190 | 0.800427 | 1.448998e-48 | -8.615850e-47 |
| Msa0062860 | Msa0329190 | 0.815944 | 7.129514e-52 | -8.615850e-47 |
| Msa0067140 | Msa0329190 | 0.817463 | 3.255283e-52 | -8.615850e-47 |
| Msa0131770 | Msa0329190 | 0.816168 | 6.354284e-52 | -8.615850e-47 |
| Msa0142220 | Msa0329190 | 0.802651 | 5.071648e-49 | -8.615850e-47 |
| Msa0153910 | Msa0329190 | 0.805523 | 1.281260e-49 | -8.615850e-47 |
| Msa0158480 | Msa0329190 | 0.802591 | 5.218126e-49 | -8.615850e-47 |
| Msa0214300 | Msa0329190 | 0.806302 | 8.788230e-50 | -8.615850e-47 |
| Msa0214370 | Msa0329190 | 0.803440 | 3.483191e-49 | -8.615850e-47 |
| Msa0214380 | Msa0329190 | 0.808723 | 2.691825e-50 | -8.615850e-47 |
| Msa0223010 | Msa0329190 | 0.807767 | 4.304117e-50 | -8.615850e-47 |
| Msa0231000 | Msa0329190 | 0.807131 | 5.871270e-50 | -8.615850e-47 |
| Msa0233300 | Msa0329190 | 0.802207 | 6.259864e-49 | -8.615850e-47 |
| Msa0309020 | Msa0329190 | 0.802230 | 6.192974e-49 | -8.615850e-47 |
| Msa0329190 | Msa0339620 | 0.805559 | 1.259292e-49 | -8.615850e-47 |
| Msa0329190 | Msa0344910 | 0.800582 | 1.347161e-48 | -8.615850e-47 |
| Msa0329190 | Msa0344980 | 0.802887 | 4.532624e-49 | -8.615850e-47 |
| Msa0329190 | Msa0355220 | 0.801452 | 8.943327e-49 | -8.615850e-47 |
| Msa0329190 | Msa0384800 | 0.801566 | 8.474679e-49 | -8.615850e-47 |
| Msa0329190 | Msa0402290 | 0.809134 | 2.198739e-50 | -8.615850e-47 |
| Msa0329190 | Msa0430420 | 0.810415 | 1.165893e-50 | -8.615850e-47 |
| Msa0329190 | Msa0431690 | 0.826483 | 2.646774e-54 | -8.615850e-47 |
| Msa0329190 | Msa0432290 | 0.830468 | 2.887725e-55 | -8.615850e-47 |
| Msa0329190 | Msa0437990 | 0.810416 | 1.165551e-50 | -8.615850e-47 |
| Msa0329190 | Msa0450000 | 0.803388 | 3.570329e-49 | -8.615850e-47 |
| Msa0329190 | Msa0512900 | 0.812040 | 5.177195e-51 | -8.615850e-47 |
| Msa0329190 | Msa0647170 | 0.810238 | 1.273137e-50 | -8.615850e-47 |
| Msa0329190 | Msa0650630 | 0.800379 | 1.481387e-48 | -8.615850e-47 |
| Msa0329190 | Msa0673450 | 0.806173 | 9.355341e-50 | -8.615850e-47 |
| Msa0329190 | Msa0678930 | 0.807428 | 5.080089e-50 | -8.615850e-47 |
| Msa0329190 | Msa0726140 | 0.816078 | 6.654682e-52 | -8.615850e-47 |
| Msa0329190 | Msa0731550 | 0.813914 | 2.010886e-51 | -8.615850e-47 |
| Msa0329190 | Msa0745060 | 0.808686 | 2.741007e-50 | -8.615850e-47 |
| Msa0329190 | Msa0766630 | 0.834439 | 2.995702e-56 | -8.615850e-47 |
| Msa0329190 | Msa0825860 | 0.803953 | 2.724998e-49 | -8.615850e-47 |
| Msa0329190 | Msa0845930 | 0.801116 | 1.047994e-48 | -8.615850e-47 |
| Msa0329190 | Msa0846330 | 0.805335 | 1.402842e-49 | -8.615850e-47 |
| Msa0329190 | Msa0846350 | 0.804669 | 1.933260e-49 | -8.615850e-47 |
| Msa0329190 | Msa0885280 | 0.807582 | 4.711440e-50 | -8.615850e-47 |
| Msa0329190 | Msa0885290 | 0.821593 | 3.718141e-53 | -8.615850e-47 |
| Msa0329190 | Msa0897880 | 0.803723 | 3.042340e-49 | -8.615850e-47 |
| Msa0329190 | Msa0907260 | 0.801647 | 8.156774e-49 | -8.615850e-47 |
| Msa0329190 | Msa0969450 | 0.814534 | 1.467165e-51 | -8.615850e-47 |
| Msa0329190 | Msa0969520 | 0.818459 | 1.938967e-52 | -8.615850e-47 |
| Msa0329190 | Msa1014540 | 0.809762 | 1.612183e-50 | -8.615850e-47 |
| Msa0329190 | Msa1025360 | 0.803224 | 3.860597e-49 | -8.615850e-47 |
| Msa0329190 | Msa1044840 | 0.807329 | 5.331158e-50 | -8.615850e-47 |
| Msa0329190 | Msa1059570 | 0.807337 | 5.309124e-50 | -8.615850e-47 |
| Msa0329190 | Msa1059750 | 0.800313 | 1.528205e-48 | -8.615850e-47 |
| Msa0329190 | Msa1079180 | 0.801504 | 8.729737e-49 | -8.615850e-47 |
| Msa0329190 | Msa1100980 | 0.805350 | 1.392989e-49 | -8.615850e-47 |
| Msa0329190 | Msa1136090 | 0.800325 | 1.519939e-48 | -8.615850e-47 |
| Msa0329190 | Msa1146110 | 0.812122 | 4.969622e-51 | -8.615850e-47 |
| Msa0329190 | Msa1187940 | 0.809477 | 1.856108e-50 | -8.615850e-47 |
| Msa0329190 | Msa1187950 | 0.805707 | 1.172137e-49 | -8.615850e-47 |
| Msa0329190 | Msa1195190 | 0.801211 | 1.002011e-48 | -8.615850e-47 |
| Msa0329190 | Msa1269670 | 0.813478 | 2.508227e-51 | -8.615850e-47 |
| Msa0329190 | Msa1270230 | 0.800844 | 1.191051e-48 | -8.615850e-47 |
| Msa0329190 | Msa1292400 | 0.806378 | 8.469455e-50 | -8.615850e-47 |
| Msa0329190 | Msa1297210 | 0.826843 | 2.171126e-54 | -8.615850e-47 |
| Msa0329190 | Msa1419030 | 0.800144 | 1.654446e-48 | -8.615850e-47 |
| Msa0329190 | Msa1427230 | 0.814573 | 1.438461e-51 | -8.615850e-47 |
| Msa0329190 | Msa1451570 | 0.806087 | 9.750945e-50 | -8.615850e-47 |
| Msa0329190 | Msa1460830 | 0.813625 | 2.328720e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0329190 | MtrunA17_Chr1g0199661 | 77.576 | 165 | 14 | 2 | 8 | 155 | 416 | 574 | 1.56e-83 | 259 |
| Msa0329190 | MtrunA17_Chr2g0326781 | 52.976 | 168 | 52 | 2 | 4 | 154 | 444 | 601 | 3.63e-51 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0329190 | AT3G54800.2 | 54.861 | 144 | 47 | 2 | 29 | 155 | 467 | 609 | 2.25e-46 | 161 |
| Msa0329190 | AT3G54800.1 | 54.861 | 144 | 47 | 2 | 29 | 155 | 467 | 609 | 2.25e-46 | 161 |
| Msa0329190 | AT2G28320.1 | 47.953 | 171 | 63 | 3 | 11 | 155 | 442 | 612 | 3.36e-43 | 152 |
Find 57 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATGTTGCAGTTCATAAAA+AGG | 0.207690 | 2_4:-42310706 | Msa0329190:intron |
| GACTTTCCTTCAGAACAAAT+TGG | 0.250662 | 2_4:-42310895 | Msa0329190:CDS |
| AATCGTCAGCATGCTATATT+TGG | 0.278182 | 2_4:+42308189 | None:intergenic |
| TCAACAAAGTTGTGCAATAA+TGG | 0.294111 | 2_4:+42309853 | None:intergenic |
| GCTGATAACATATATTTCTA+AGG | 0.305926 | 2_4:-42309797 | Msa0329190:intron |
| GTGCAAGGTAAAGTACAATT+TGG | 0.323211 | 2_4:+42310609 | None:intergenic |
| GAAAGTGCATCATGCTCTTA+TGG | 0.330713 | 2_4:-42310651 | Msa0329190:CDS |
| ATGTTCGAAGTTGAATTAAA+AGG | 0.339341 | 2_4:-42309505 | Msa0329190:intron |
| CAACCAGCTGGCGATGGTTC+GGG | 0.353478 | 2_4:+42310862 | None:intergenic |
| AAAAGAAAATACCTGAACTA+TGG | 0.360829 | 2_4:+42310176 | None:intergenic |
| ACAACCAGCTGGCGATGGTT+CGG | 0.385033 | 2_4:+42310861 | None:intergenic |
| TCGTCCTGGTTCCATAGTTC+AGG | 0.411237 | 2_4:-42310187 | Msa0329190:intron |
| ATGCTATACATGGAATTTCC+TGG | 0.439945 | 2_4:+42309906 | None:intergenic |
| TTGACAGAAATTGATATTGA+TGG | 0.446351 | 2_4:-42308422 | Msa0329190:intron |
| TTGCTCAATTGTCAGTTATG+TGG | 0.458333 | 2_4:-42308163 | Msa0329190:three_prime_UTR |
| TCAGTTATGTGGACTATTGT+TGG | 0.459716 | 2_4:-42308152 | Msa0329190:three_prime_UTR |
| TTATTGCACAACTTTGTTGA+AGG | 0.463311 | 2_4:-42309850 | Msa0329190:CDS |
| CAACTGCTAATCTCAGTTCC+TGG | 0.473457 | 2_4:+42308331 | None:intergenic |
| TGCAATTTGTGGGTGCAGAT+TGG | 0.475914 | 2_4:-42310245 | Msa0329190:CDS |
| TTGATTAGCATGGTGACAGC+AGG | 0.479284 | 2_4:+42310927 | None:intergenic |
| AGCACACCAATTTGTTCTGA+AGG | 0.501430 | 2_4:+42310889 | None:intergenic |
| CGACACCTTGATGCAATTTG+TGG | 0.501821 | 2_4:-42310256 | Msa0329190:CDS |
| TTTGATCGACATTGCAGCGG+TGG | 0.529057 | 2_4:+42310985 | None:intergenic |
| CAGTCAAGTGCTTCATCTCA+AGG | 0.530726 | 2_4:-42309471 | Msa0329190:intron |
| CAACCCGAACCATCGCCAGC+TGG | 0.540508 | 2_4:-42310865 | Msa0329190:CDS |
| GCTGTCACCATGCTAATCAA+TGG | 0.547196 | 2_4:-42310924 | Msa0329190:CDS |
| ATTGTACTTTACCTTGCACC+TGG | 0.551435 | 2_4:-42310605 | Msa0329190:CDS |
| TTGATCGACATTGCAGCGGT+GGG | 0.558908 | 2_4:+42310986 | None:intergenic |
| CAGCTGGCGATGGTTCGGGT+TGG | 0.561845 | 2_4:+42310866 | None:intergenic |
| ACAGAAATTGATATTGATGG+TGG | 0.563135 | 2_4:-42308419 | Msa0329190:intron |
| TGATTAGCATGGTGACAGCA+GGG | 0.568616 | 2_4:+42310928 | None:intergenic |
| ATTGTCATGAATCAGATGCC+AGG | 0.568684 | 2_4:-42309924 | Msa0329190:intron |
| TTATTTACAAGACCATCAAA+AGG | 0.569025 | 2_4:-42310541 | Msa0329190:intron |
| GCAGCGGTGGGTGTAAAAGA+AGG | 0.569649 | 2_4:+42310998 | None:intergenic |
| GACACCTTGATGCAATTTGT+GGG | 0.570088 | 2_4:-42310255 | Msa0329190:CDS |
| TAGCATTGCCCTCTATTACA+TGG | 0.570438 | 2_4:-42309889 | Msa0329190:CDS |
| AGATCGATCAGAAGGAGTCC+AGG | 0.570965 | 2_4:+42310587 | None:intergenic |
| GGACTTGCAAGAGGTAGCTA+AGG | 0.574768 | 2_4:-42310676 | Msa0329190:CDS |
| AAAGTTGTGCAATAATGGAA+AGG | 0.583085 | 2_4:+42309858 | None:intergenic |
| ATAATTCGATTGTTCGATGG+AGG | 0.583853 | 2_4:+42310961 | None:intergenic |
| TGCTAATCTCAGTTCCTGGT+GGG | 0.585113 | 2_4:+42308335 | None:intergenic |
| GATGATTTGAGTAGTCGTCC+TGG | 0.586297 | 2_4:-42310201 | Msa0329190:CDS |
| ACAAAACAACCAGCTGGCGA+TGG | 0.586412 | 2_4:+42310856 | None:intergenic |
| ATAGAGGGCAATGCTATACA+TGG | 0.587099 | 2_4:+42309896 | None:intergenic |
| CTTGCAAGAGGTAGCTAAGG+AGG | 0.588619 | 2_4:-42310673 | Msa0329190:CDS |
| TCAGAAGGAGTCCAGGTGCA+AGG | 0.605254 | 2_4:+42310594 | None:intergenic |
| GGCATAATTCGATTGTTCGA+TGG | 0.606010 | 2_4:+42310958 | None:intergenic |
| CAGAGTGCCATTGATTAGCA+TGG | 0.607194 | 2_4:+42310917 | None:intergenic |
| TGCACCCACAAATTGCATCA+AGG | 0.608240 | 2_4:+42310251 | None:intergenic |
| CATCTTCTCGTGTCTTACAT+CGG | 0.617977 | 2_4:+42310220 | None:intergenic |
| CTGCTAATCTCAGTTCCTGG+TGG | 0.619990 | 2_4:+42308334 | None:intergenic |
| ATTAGCATGGTGACAGCAGG+GGG | 0.625954 | 2_4:+42310930 | None:intergenic |
| GGGTTACATGGACTTGCAAG+AGG | 0.634224 | 2_4:-42310685 | Msa0329190:CDS |
| GATTAGCATGGTGACAGCAG+GGG | 0.636809 | 2_4:+42310929 | None:intergenic |
| AATACCTGAACTATGGAACC+AGG | 0.640547 | 2_4:+42310183 | None:intergenic |
| AACTAAATGAAGATCCCACC+AGG | 0.650905 | 2_4:-42308349 | Msa0329190:three_prime_UTR |
| GGATTTGATCGACATTGCAG+CGG | 0.659409 | 2_4:+42310982 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACAAAAAAGAATTATATA+TGG | + | chr2_4:42309123-42309142 | None:intergenic | 10.0% |
| !! | TAATATATAATCAAGATATA+AGG | + | chr2_4:42309167-42309186 | None:intergenic | 10.0% |
| !! | TCATAAAATCATTTAAAAAG+TGG | + | chr2_4:42308404-42308423 | None:intergenic | 15.0% |
| !!! | TAAAATTAAATACCTTTTGA+TGG | + | chr2_4:42308626-42308645 | None:intergenic | 15.0% |
| !! | ATTTGACAATTACAATTAAT+TGG | - | chr2_4:42309542-42309561 | Msa0329190:intron | 15.0% |
| !! | ATCTCAATCAAATTTAAATA+GGG | + | chr2_4:42310236-42310255 | None:intergenic | 15.0% |
| !! | AATCTCAATCAAATTTAAAT+AGG | + | chr2_4:42310237-42310256 | None:intergenic | 15.0% |
| !!! | TATGTTTTACAACATAATAA+AGG | + | chr2_4:42310400-42310419 | None:intergenic | 15.0% |
| !! | AAACTTCAATTAAAACTAAC+CGG | + | chr2_4:42308342-42308361 | None:intergenic | 20.0% |
| !! | TTTCTCAATTAGAATACTTT+GGG | - | chr2_4:42308359-42308378 | Msa0329190:three_prime_UTR | 20.0% |
| !!! | TAAATGATTTTATGAGAAAG+TGG | - | chr2_4:42308409-42308428 | Msa0329190:three_prime_UTR | 20.0% |
| !!! | CACTCATATAAGTTTAAAAT+TGG | + | chr2_4:42308649-42308668 | None:intergenic | 20.0% |
| !!! | AGTGCAAATTTTTCTTTTAT+AGG | - | chr2_4:42308863-42308882 | Msa0329190:intron | 20.0% |
| !!! | AATTTTTCTTTTATAGGTCA+AGG | - | chr2_4:42308869-42308888 | Msa0329190:intron | 20.0% |
| !! | TATTAATCACCTTTAAGTAT+TGG | - | chr2_4:42309185-42309204 | Msa0329190:intron | 20.0% |
| !! | GTTCATTACAAGTATAAATT+TGG | - | chr2_4:42309414-42309433 | Msa0329190:intron | 20.0% |
| !!! | TAAATTTGGAACAAAATTGT+AGG | - | chr2_4:42309428-42309447 | Msa0329190:intron | 20.0% |
| !! | TACAATCAATCATTCTAATT+AGG | - | chr2_4:42309603-42309622 | Msa0329190:intron | 20.0% |
| !!! | AAGTTTGAAATGAAATGATT+TGG | - | chr2_4:42309942-42309961 | Msa0329190:intron | 20.0% |
| !!! | TTGAGATTTTATTTTTGAGT+AGG | - | chr2_4:42310249-42310268 | Msa0329190:CDS | 20.0% |
| !! | AAAACATATCAAATTGATGA+TGG | - | chr2_4:42310412-42310431 | Msa0329190:intron | 20.0% |
| !!! | AAATAAGCACAGATTTTTTT+GGG | - | chr2_4:42310568-42310587 | Msa0329190:CDS | 20.0% |
| !! | TATCAACAAACATAGAAAAT+AGG | + | chr2_4:42310603-42310622 | None:intergenic | 20.0% |
| ! | GTTTCTCAATTAGAATACTT+TGG | - | chr2_4:42308358-42308377 | Msa0329190:three_prime_UTR | 25.0% |
| ! | ATATGTTGCAGTTCATAAAA+AGG | - | chr2_4:42308446-42308465 | Msa0329190:intron | 25.0% |
| ! | TATGTTGCAGTTCATAAAAA+GGG | - | chr2_4:42308447-42308466 | Msa0329190:intron | 25.0% |
| ! | AAAAATAAAGATCGATCAGA+AGG | + | chr2_4:42308576-42308595 | None:intergenic | 25.0% |
| !!! | TTCTGATCGATCTTTATTTT+TGG | - | chr2_4:42308575-42308594 | Msa0329190:intron | 25.0% |
| ! | TTATTTACAAGACCATCAAA+AGG | - | chr2_4:42308611-42308630 | Msa0329190:intron | 25.0% |
| ! | AAAAGAAAATACCTGAACTA+TGG | + | chr2_4:42308979-42308998 | None:intergenic | 25.0% |
| ! | ATTGTCAAAATATTACTGCT+AGG | - | chr2_4:42309036-42309055 | Msa0329190:intron | 25.0% |
| ! | ATTTCTTATCATATGTGCTA+TGG | - | chr2_4:42309060-42309079 | Msa0329190:intron | 25.0% |
| !! | GCTGATAACATATATTTCTA+AGG | - | chr2_4:42309355-42309374 | Msa0329190:intron | 25.0% |
| ! | ATGTTCGAAGTTGAATTAAA+AGG | - | chr2_4:42309647-42309666 | Msa0329190:intron | 25.0% |
| ! | TATGTTCTTAACAAACTTCT+AGG | - | chr2_4:42309706-42309725 | Msa0329190:intron | 25.0% |
| !! | ATATGTTGAGATGAAGTTTT+TGG | + | chr2_4:42309743-42309762 | None:intergenic | 25.0% |
| !!! | CAACTTTTAGAACCTATATT+TGG | - | chr2_4:42309825-42309844 | Msa0329190:CDS | 25.0% |
| ! | AGTAAAATGTAACTTGAGAA+AGG | - | chr2_4:42310060-42310079 | Msa0329190:intron | 25.0% |
| ! | TAAGAGCTTAGATAGAAAAA+TGG | - | chr2_4:42310119-42310138 | Msa0329190:intron | 25.0% |
| ! | TAGGGAAAAATCAATTACAA+AGG | + | chr2_4:42310218-42310237 | None:intergenic | 25.0% |
| !!! | ATAAAATGAACCTTTTAGCT+AGG | + | chr2_4:42310308-42310327 | None:intergenic | 25.0% |
| !! | TAAACAATAAAGGATTAGTG+AGG | + | chr2_4:42310336-42310355 | None:intergenic | 25.0% |
| ! | AAACACAGAGTAAACAATAA+AGG | + | chr2_4:42310346-42310365 | None:intergenic | 25.0% |
| !!! | CAAATAAGCACAGATTTTTT+TGG | - | chr2_4:42310567-42310586 | Msa0329190:CDS | 25.0% |
| ! | TTGACAGAAATTGATATTGA+TGG | - | chr2_4:42310730-42310749 | Msa0329190:intron | 25.0% |
| !! | TTCAATTTTCACACACTTTT+CGG | + | chr2_4:42310781-42310800 | None:intergenic | 25.0% |
| AAAAAGTTACAAGAACTTGC+CGG | - | chr2_4:42308320-42308339 | Msa0329190:three_prime_UTR | 30.0% | |
| !! | ATACTTTGGGTTGTAATTTG+AGG | - | chr2_4:42308372-42308391 | Msa0329190:three_prime_UTR | 30.0% |
| AGTTCATAAAAAGGGTTACA+TGG | - | chr2_4:42308455-42308474 | Msa0329190:intron | 30.0% | |
| ! | GTTTAATTCTACGATGGATT+TGG | + | chr2_4:42308828-42308847 | None:intergenic | 30.0% |
| AAGTGTGTTTAATTCTACGA+TGG | + | chr2_4:42308834-42308853 | None:intergenic | 30.0% | |
| ATTCAGAAATATGCAGCAAA+AGG | - | chr2_4:42309093-42309112 | Msa0329190:intron | 30.0% | |
| ATTGACAGTCCAATACTTAA+AGG | + | chr2_4:42309197-42309216 | None:intergenic | 30.0% | |
| ! | AGTTTTCACCATGTAATAGA+GGG | + | chr2_4:42309274-42309293 | None:intergenic | 30.0% |
| ! | AAAGTTGTGCAATAATGGAA+AGG | + | chr2_4:42309297-42309316 | None:intergenic | 30.0% |
| TCAACAAAGTTGTGCAATAA+TGG | + | chr2_4:42309302-42309321 | None:intergenic | 30.0% | |
| TTATTGCACAACTTTGTTGA+AGG | - | chr2_4:42309302-42309321 | Msa0329190:intron | 30.0% | |
| ! | TGAGAGTTTCAAATCGTTTT+TGG | + | chr2_4:42309784-42309803 | None:intergenic | 30.0% |
| ! | AACGATTTGAAACTCTCATT+TGG | - | chr2_4:42309786-42309805 | Msa0329190:intron | 30.0% |
| GCACATAACTAACCAAATAT+AGG | + | chr2_4:42309840-42309859 | None:intergenic | 30.0% | |
| CCAAATGATAGCAATATTGA+AGG | + | chr2_4:42309862-42309881 | None:intergenic | 30.0% | |
| CCTTCAATATTGCTATCATT+TGG | - | chr2_4:42309859-42309878 | Msa0329190:CDS | 30.0% | |
| AAAGTACAATGTTTGTGAGT+TGG | - | chr2_4:42310001-42310020 | Msa0329190:intron | 30.0% | |
| TGATATCAGTTTCAAACACA+TGG | - | chr2_4:42310173-42310192 | Msa0329190:intron | 30.0% | |
| TTTCATGATTCCTAGCTAAA+AGG | - | chr2_4:42310295-42310314 | Msa0329190:intron | 30.0% | |
| ! | TGCATTCTGTTGTTGAATTT+TGG | - | chr2_4:42310539-42310558 | Msa0329190:intron | 30.0% |
| ACAGAAATTGATATTGATGG+TGG | - | chr2_4:42310733-42310752 | Msa0329190:intron | 30.0% | |
| ATAATTCGATTGTTCGATGG+AGG | + | chr2_4:42308194-42308213 | None:intergenic | 35.0% | |
| GACTTTCCTTCAGAACAAAT+TGG | - | chr2_4:42308257-42308276 | Msa0329190:three_prime_UTR | 35.0% | |
| ! | TTTTTCACAAAACAACCAGC+TGG | + | chr2_4:42308305-42308324 | None:intergenic | 35.0% |
| GTGCAAGGTAAAGTACAATT+TGG | + | chr2_4:42308546-42308565 | None:intergenic | 35.0% | |
| !!! | CGATCTTTATTTTTGGTTCG+AGG | - | chr2_4:42308582-42308601 | Msa0329190:intron | 35.0% |
| !! | TAATCCACTTTAGAGTGGAA+AGG | + | chr2_4:42308790-42308809 | None:intergenic | 35.0% |
| ATGCTATACATGGAATTTCC+TGG | + | chr2_4:42309249-42309268 | None:intergenic | 35.0% | |
| ! | GAGTTTTCACCATGTAATAG+AGG | + | chr2_4:42309275-42309294 | None:intergenic | 35.0% |
| ATCTCTAATGTCAGTGAGAT+TGG | - | chr2_4:42310502-42310521 | Msa0329190:intron | 35.0% | |
| AATCGTCAGCATGCTATATT+TGG | + | chr2_4:42310966-42310985 | None:intergenic | 35.0% | |
| TTGCTCAATTGTCAGTTATG+TGG | - | chr2_4:42310989-42311008 | Msa0329190:five_prime_UTR | 35.0% | |
| ! | TCAGTTATGTGGACTATTGT+TGG | - | chr2_4:42311000-42311019 | Msa0329190:five_prime_UTR | 35.0% |
| GGCATAATTCGATTGTTCGA+TGG | + | chr2_4:42308197-42308216 | None:intergenic | 40.0% | |
| ! | AGCACACCAATTTGTTCTGA+AGG | + | chr2_4:42308266-42308285 | None:intergenic | 40.0% |
| ! | TGGGTTGTAATTTGAGGCTA+AGG | - | chr2_4:42308378-42308397 | Msa0329190:three_prime_UTR | 40.0% |
| ! | GAAAGTGCATCATGCTCTTA+TGG | - | chr2_4:42308501-42308520 | Msa0329190:intron | 40.0% |
| ATTGTACTTTACCTTGCACC+TGG | - | chr2_4:42308547-42308566 | Msa0329190:intron | 40.0% | |
| ! | CTTTCCTTTCCACTCTAAAG+TGG | - | chr2_4:42308783-42308802 | Msa0329190:intron | 40.0% |
| GACACCTTGATGCAATTTGT+GGG | - | chr2_4:42308897-42308916 | Msa0329190:intron | 40.0% | |
| CATCTTCTCGTGTCTTACAT+CGG | + | chr2_4:42308935-42308954 | None:intergenic | 40.0% | |
| AATACCTGAACTATGGAACC+AGG | + | chr2_4:42308972-42308991 | None:intergenic | 40.0% | |
| CAGAAATATGCAGCAAAAGG+TGG | - | chr2_4:42309096-42309115 | Msa0329190:intron | 40.0% | |
| AGGTCATACTCACTTGTATG+TGG | + | chr2_4:42309147-42309166 | None:intergenic | 40.0% | |
| ATTGTCATGAATCAGATGCC+AGG | - | chr2_4:42309228-42309247 | Msa0329190:intron | 40.0% | |
| ATAGAGGGCAATGCTATACA+TGG | + | chr2_4:42309259-42309278 | None:intergenic | 40.0% | |
| TAGCATTGCCCTCTATTACA+TGG | - | chr2_4:42309263-42309282 | Msa0329190:intron | 40.0% | |
| TAGAGATGTCAAACTCCATG+TGG | + | chr2_4:42310489-42310508 | None:intergenic | 40.0% | |
| AACTAAATGAAGATCCCACC+AGG | - | chr2_4:42310803-42310822 | Msa0329190:intron | 40.0% | |
| GGATTTGATCGACATTGCAG+CGG | + | chr2_4:42308173-42308192 | None:intergenic | 45.0% | |
| TGATTAGCATGGTGACAGCA+GGG | + | chr2_4:42308227-42308246 | None:intergenic | 45.0% | |
| TTGATTAGCATGGTGACAGC+AGG | + | chr2_4:42308228-42308247 | None:intergenic | 45.0% | |
| GCTGTCACCATGCTAATCAA+TGG | - | chr2_4:42308228-42308247 | Msa0329190:three_prime_UTR | 45.0% | |
| ! | CAGAGTGCCATTGATTAGCA+TGG | + | chr2_4:42308238-42308257 | None:intergenic | 45.0% |
| ! | GCGAGTAATCCACTTTAGAG+TGG | + | chr2_4:42308795-42308814 | None:intergenic | 45.0% |
| CGACACCTTGATGCAATTTG+TGG | - | chr2_4:42308896-42308915 | Msa0329190:intron | 45.0% | |
| TGCACCCACAAATTGCATCA+AGG | + | chr2_4:42308904-42308923 | None:intergenic | 45.0% | |
| TGCAATTTGTGGGTGCAGAT+TGG | - | chr2_4:42308907-42308926 | Msa0329190:intron | 45.0% | |
| GATGATTTGAGTAGTCGTCC+TGG | - | chr2_4:42308951-42308970 | Msa0329190:intron | 45.0% | |
| CAGTCAAGTGCTTCATCTCA+AGG | - | chr2_4:42309681-42309700 | Msa0329190:intron | 45.0% | |
| GGCAAGTTCGGAATTTCGAA+AGG | + | chr2_4:42310468-42310487 | None:intergenic | 45.0% | |
| GAAATTCCGAACTTGCCACA+TGG | - | chr2_4:42310471-42310490 | Msa0329190:intron | 45.0% | |
| CAAACTCCATGTGGCAAGTT+CGG | + | chr2_4:42310480-42310499 | None:intergenic | 45.0% | |
| TGCTAATCTCAGTTCCTGGT+GGG | + | chr2_4:42310820-42310839 | None:intergenic | 45.0% | |
| CAACTGCTAATCTCAGTTCC+TGG | + | chr2_4:42310824-42310843 | None:intergenic | 45.0% | |
| TTGATCGACATTGCAGCGGT+GGG | + | chr2_4:42308169-42308188 | None:intergenic | 50.0% | |
| TTTGATCGACATTGCAGCGG+TGG | + | chr2_4:42308170-42308189 | None:intergenic | 50.0% | |
| ATTAGCATGGTGACAGCAGG+GGG | + | chr2_4:42308225-42308244 | None:intergenic | 50.0% | |
| GATTAGCATGGTGACAGCAG+GGG | + | chr2_4:42308226-42308245 | None:intergenic | 50.0% | |
| ACAAAACAACCAGCTGGCGA+TGG | + | chr2_4:42308299-42308318 | None:intergenic | 50.0% | |
| GGGTTACATGGACTTGCAAG+AGG | - | chr2_4:42308467-42308486 | Msa0329190:intron | 50.0% | |
| GGACTTGCAAGAGGTAGCTA+AGG | - | chr2_4:42308476-42308495 | Msa0329190:intron | 50.0% | |
| CTTGCAAGAGGTAGCTAAGG+AGG | - | chr2_4:42308479-42308498 | Msa0329190:intron | 50.0% | |
| AGATCGATCAGAAGGAGTCC+AGG | + | chr2_4:42308568-42308587 | None:intergenic | 50.0% | |
| TCGTCCTGGTTCCATAGTTC+AGG | - | chr2_4:42308965-42308984 | Msa0329190:intron | 50.0% | |
| TCCTCTAGACTCACACTGCT+TGG | - | chr2_4:42310091-42310110 | Msa0329190:intron | 50.0% | |
| ACCAAGCAGTGTGAGTCTAG+AGG | + | chr2_4:42310095-42310114 | None:intergenic | 50.0% | |
| CTGCTAATCTCAGTTCCTGG+TGG | + | chr2_4:42310821-42310840 | None:intergenic | 50.0% | |
| GCAGCGGTGGGTGTAAAAGA+AGG | + | chr2_4:42308157-42308176 | None:intergenic | 55.0% | |
| ACAACCAGCTGGCGATGGTT+CGG | + | chr2_4:42308294-42308313 | None:intergenic | 55.0% | |
| TCAGAAGGAGTCCAGGTGCA+AGG | + | chr2_4:42308561-42308580 | None:intergenic | 55.0% | |
| CAACCAGCTGGCGATGGTTC+GGG | + | chr2_4:42308293-42308312 | None:intergenic | 60.0% | |
| ! | CAGCTGGCGATGGTTCGGGT+TGG | + | chr2_4:42308289-42308308 | None:intergenic | 65.0% |
| CAACCCGAACCATCGCCAGC+TGG | - | chr2_4:42308287-42308306 | Msa0329190:three_prime_UTR | 65.0% | |
| ! | TGGTGACAGCAGGGGGTGCG+CGG | + | chr2_4:42308218-42308237 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 42308120 | 42311054 | 42308120 | ID=Msa0329190;Name=Msa0329190 |
| chr2_4 | mRNA | 42308120 | 42311054 | 42308120 | ID=Msa0329190-mRNA-1;Parent=Msa0329190;Name=Msa0329190-mRNA-1;_AED=0.22;_eAED=0.22;_QI=92|0.8|1|1|0.6|0.5|6|381|174 |
| chr2_4 | exon | 42308120 | 42308437 | 42308120 | ID=Msa0329190-mRNA-1:exon:13087;Parent=Msa0329190-mRNA-1 |
| chr2_4 | exon | 42309472 | 42309517 | 42309472 | ID=Msa0329190-mRNA-1:exon:13086;Parent=Msa0329190-mRNA-1 |
| chr2_4 | exon | 42309798 | 42309931 | 42309798 | ID=Msa0329190-mRNA-1:exon:13085;Parent=Msa0329190-mRNA-1 |
| chr2_4 | exon | 42310188 | 42310289 | 42310188 | ID=Msa0329190-mRNA-1:exon:13084;Parent=Msa0329190-mRNA-1 |
| chr2_4 | exon | 42310542 | 42310717 | 42310542 | ID=Msa0329190-mRNA-1:exon:13083;Parent=Msa0329190-mRNA-1 |
| chr2_4 | exon | 42310833 | 42311054 | 42310833 | ID=Msa0329190-mRNA-1:exon:13082;Parent=Msa0329190-mRNA-1 |
| chr2_4 | five_prime_UTR | 42310963 | 42311054 | 42310963 | ID=Msa0329190-mRNA-1:five_prime_utr;Parent=Msa0329190-mRNA-1 |
| chr2_4 | CDS | 42310833 | 42310962 | 42310833 | ID=Msa0329190-mRNA-1:cds;Parent=Msa0329190-mRNA-1 |
| chr2_4 | CDS | 42310542 | 42310717 | 42310542 | ID=Msa0329190-mRNA-1:cds;Parent=Msa0329190-mRNA-1 |
| chr2_4 | CDS | 42310188 | 42310289 | 42310188 | ID=Msa0329190-mRNA-1:cds;Parent=Msa0329190-mRNA-1 |
| chr2_4 | CDS | 42309815 | 42309931 | 42309815 | ID=Msa0329190-mRNA-1:cds;Parent=Msa0329190-mRNA-1 |
| chr2_4 | three_prime_UTR | 42309798 | 42309814 | 42309798 | ID=Msa0329190-mRNA-1:three_prime_utr;Parent=Msa0329190-mRNA-1 |
| chr2_4 | three_prime_UTR | 42309472 | 42309517 | 42309472 | ID=Msa0329190-mRNA-1:three_prime_utr;Parent=Msa0329190-mRNA-1 |
| chr2_4 | three_prime_UTR | 42308120 | 42308437 | 42308120 | ID=Msa0329190-mRNA-1:three_prime_utr;Parent=Msa0329190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
