AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0761580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0761580 MtrunA17_Chr5g0411871 97.790 362 8 0 1 362 15 376 0.0 728
Msa0761580 MtrunA17_Chr5g0411901 83.934 361 58 0 1 361 1 361 0.0 625
Msa0761580 MtrunA17_Chr5g0411881 83.102 361 61 0 1 361 1 361 0.0 623
Msa0761580 MtrunA17_Chr5g0411821 80.110 362 71 1 1 362 1 361 0.0 598
Msa0761580 MtrunA17_Chr4g0064291 79.661 354 72 0 9 362 8 361 0.0 590
Msa0761580 MtrunA17_Chr5g0411911 79.552 357 73 0 5 361 6 362 0.0 583
Msa0761580 MtrunA17_Chr5g0411841 78.453 362 77 1 1 362 1 361 0.0 575
Msa0761580 MtrunA17_Chr5g0411931 79.661 354 72 0 9 362 8 361 0.0 575
Msa0761580 MtrunA17_Chr5g0411811 78.249 354 77 0 9 362 8 361 0.0 558
Msa0761580 MtrunA17_Chr5g0411801 73.164 354 95 0 9 362 40 393 0.0 542
Msa0761580 MtrunA17_Chr8g0367151 75.706 354 86 0 8 361 7 360 0.0 534
Msa0761580 MtrunA17_Chr5g0411791 76.596 329 77 0 34 362 7 335 3.20e-175 490
Msa0761580 MtrunA17_Chr8g0383721 61.143 350 135 1 9 358 8 356 2.02e-152 433
Msa0761580 MtrunA17_Chr5g0411941 60.870 345 135 0 15 359 14 358 9.40e-145 414
Msa0761580 MtrunA17_Chr1g0157021 55.587 349 154 1 9 356 7 355 2.92e-129 374
Msa0761580 MtrunA17_Chr1g0208031 53.353 343 160 0 12 354 9 351 2.77e-121 354
Msa0761580 MtrunA17_Chr2g0279791 53.179 346 160 2 15 359 62 406 4.68e-116 342
Msa0761580 MtrunA17_Chr2g0279801 50.000 212 93 3 149 359 15 214 1.34e-53 176
Msa0761580 MtrunA17_Chr5g0411851 86.111 72 9 1 1 72 1 71 1.91e-38 133
Msa0761580 MtrunA17_Chr5g0411861 78.125 64 14 0 298 361 1 64 7.36e-30 109
Msa0761580 MtrunA17_Chr8g0385221 26.335 281 177 7 26 280 68 344 9.27e-20 90.1
Msa0761580 MtrunA17_Chr4g0021211 27.483 302 191 9 39 317 60 356 6.38e-18 84.3
Msa0761580 MtrunA17_Chr6g0474141 25.263 285 190 7 16 288 19 292 6.73e-17 80.9
Msa0761580 MtrunA17_Chr7g0242291 26.301 346 205 12 40 344 48 384 1.19e-13 71.6
Msa0761580 MtrunA17_Chr3g0132351 27.937 315 185 14 40 320 44 350 2.69e-13 70.5
Msa0761580 MtrunA17_Chr7g0262421 26.019 319 197 13 40 328 38 347 7.15e-13 69.3
Msa0761580 MtrunA17_Chr3g0125961 22.063 349 233 11 40 355 37 379 9.84e-13 68.9
Msa0761580 MtrunA17_Chr3g0125911 22.222 378 253 12 1 345 1 370 1.35e-12 68.2
Msa0761580 MtrunA17_Chr5g0419681 24.024 333 222 8 39 343 35 364 1.75e-12 67.8
Msa0761580 MtrunA17_Chr3g0118441 26.846 298 186 13 39 308 40 333 6.29e-12 66.2
Msa0761580 MtrunA17_Chr7g0242301 26.807 332 188 15 40 344 13 316 8.23e-12 65.5
Msa0761580 MtrunA17_Chr3g0125941 21.829 339 227 10 40 345 38 371 2.50e-11 64.3
Msa0761580 MtrunA17_Chr1g0183131 25.364 343 214 15 1 313 1 331 4.16e-11 63.9
Msa0761580 MtrunA17_Chr5g0440521 27.181 298 183 10 40 308 46 338 6.75e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0761580 AT4G37980.1 69.714 350 106 0 12 361 7 356 1.13e-173 487
Msa0761580 AT4G37990.1 69.143 350 108 0 12 361 7 356 1.16e-167 472
Msa0761580 AT4G37970.1 61.190 353 137 0 9 361 9 361 1.69e-162 459
Msa0761580 AT4G39330.1 60.340 353 140 0 8 360 7 359 3.47e-161 456
Msa0761580 AT2G21890.1 58.405 351 145 1 13 362 6 356 6.50e-151 430
Msa0761580 AT2G21730.1 58.807 352 143 2 13 362 6 357 2.10e-150 429
Msa0761580 AT4G37980.2 69.097 288 89 0 12 299 7 294 1.65e-134 385
Msa0761580 AT4G39330.2 59.322 295 120 0 8 302 7 301 3.67e-128 370
Msa0761580 AT4G37970.4 58.966 290 119 0 9 298 9 298 2.51e-123 357
Msa0761580 AT3G19450.1 53.757 346 160 0 12 357 9 354 1.92e-115 340
Msa0761580 AT1G72680.1 50.146 343 170 1 17 359 14 355 3.28e-112 331
Msa0761580 AT4G34230.1 52.299 348 166 0 7 354 3 350 1.55e-105 314
Msa0761580 AT4G34230.2 52.011 348 167 0 7 354 3 350 1.44e-104 312
Msa0761580 AT4G37970.3 59.072 237 97 0 9 245 9 245 4.93e-99 294
Msa0761580 AT4G37970.2 59.574 235 95 0 9 243 9 243 9.28e-99 293
Msa0761580 AT5G63620.1 25.795 283 178 8 25 280 69 346 7.08e-20 90.9
Msa0761580 AT5G63620.2 25.795 283 178 8 25 280 69 346 8.71e-20 90.5
Msa0761580 AT5G63620.3 28.634 227 137 6 25 230 69 291 2.43e-19 88.2
Msa0761580 AT1G22430.2 26.183 317 202 12 40 328 42 354 1.55e-17 83.6
Msa0761580 AT1G22430.1 26.183 317 202 12 40 328 42 354 1.55e-17 83.6
Msa0761580 AT5G51970.1 25.632 277 183 7 16 280 21 286 6.78e-17 81.6
Msa0761580 AT5G51970.2 25.632 277 183 7 16 280 21 286 6.78e-17 81.6
Msa0761580 AT1G64710.2 26.608 342 208 13 40 344 13 348 2.38e-16 79.7
Msa0761580 AT1G64710.1 26.608 342 208 13 40 344 36 371 2.43e-16 80.1
Msa0761580 AT5G43940.1 26.000 350 214 13 40 353 36 376 3.26e-16 79.7
Msa0761580 AT5G43940.2 26.000 350 214 13 40 353 48 388 4.34e-16 79.3
Msa0761580 AT1G32780.1 26.431 367 213 16 40 359 37 393 5.77e-16 79.0
Msa0761580 AT4G22110.2 24.927 341 215 16 40 344 43 378 1.99e-15 77.4
Msa0761580 AT4G22110.1 24.927 341 215 16 40 344 43 378 1.99e-15 77.4
Msa0761580 AT1G22430.3 26.500 200 128 5 40 222 42 239 4.73e-13 69.7
Msa0761580 AT1G22430.4 26.500 200 128 5 40 222 42 239 5.66e-13 69.3
Msa0761580 AT1G22430.5 26.500 200 128 5 40 222 42 239 5.66e-13 69.3
Msa0761580 AT1G22440.1 24.857 350 206 14 40 345 40 376 6.01e-13 69.7
Msa0761580 AT5G42250.1 25.000 296 193 9 40 308 45 338 4.75e-12 67.0
Msa0761580 AT4G22110.3 26.267 217 138 9 40 237 43 256 2.47e-11 63.9
Msa0761580 AT1G77120.1 22.254 346 236 11 40 355 36 378 2.68e-11 64.7

Find 97 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCACATGTGACTACAAATT+TGG 0.137677 5_2:+19056500 None:intergenic
TATCGATTTGTGATTGATAT+TGG 0.198958 5_2:-19055523 Msa0761580:CDS
TCCATTTATCCACTTGTTCC+TGG 0.254331 5_2:-19056897 Msa0761580:CDS
CCCAGGAACAAGTGGATAAA+TGG 0.269203 5_2:+19056896 None:intergenic
GTGAAATTTGCCAAAGCTTT+TGG 0.281096 5_2:-19056255 Msa0761580:CDS
CAAGATTGTCATTACAATCT+TGG 0.292744 5_2:+19056535 None:intergenic
CCCCTTTCAATTTCTCTAGA+AGG 0.302235 5_2:-19057618 Msa0761580:intron
CCACATGTGACTACAAATTT+GGG 0.308824 5_2:+19056501 None:intergenic
GTTGTTGGTCTTGGTGGGCT+TGG 0.312818 5_2:-19056288 Msa0761580:CDS
CCTGAATATACTTTAATTCA+AGG 0.316011 5_2:-19055898 Msa0761580:intron
CATATAGGTGTTGTTGGTCT+TGG 0.327351 5_2:-19056297 Msa0761580:CDS
AAGTCAAGTTGGAGGGTTAA+AGG 0.329887 5_2:-19055662 Msa0761580:CDS
TATGGTACCTGAATCTGCTT+TGG 0.345939 5_2:+19056141 None:intergenic
CCTTGAATTAAAGTATATTC+AGG 0.347223 5_2:+19055898 None:intergenic
GCCCATCCAAAGGCCTTCTT+AGG 0.354227 5_2:+19057667 None:intergenic
CAAATTCAGGATGTGTTATA+CGG 0.360881 5_2:+19057754 None:intergenic
CCCATTCATTCTTCGCCATA+TGG 0.361451 5_2:+19056925 None:intergenic
TCAATGATATGCTCAAATTC+AGG 0.365903 5_2:+19057741 None:intergenic
TAGTGACCCAAAGCAGATTC+AGG 0.370893 5_2:-19056148 Msa0761580:intron
AACATACCTCTTGAATTTGC+TGG 0.378852 5_2:-19056390 Msa0761580:CDS
CATCCTCTCTTACCAATGAT+TGG 0.384438 5_2:-19055982 Msa0761580:CDS
GTTAGGCGATGTACTAATTA+CGG 0.396532 5_2:+19056221 None:intergenic
ATCGGAACAACCTCGATATC+CGG 0.404517 5_2:+19055595 None:intergenic
CACATTAGCACCAAAAGCTT+TGG 0.409643 5_2:+19056245 None:intergenic
TTAGGCTGCAATTGGTACTT+TGG 0.409947 5_2:-19056034 Msa0761580:intron
TCTTGGTGGGCTTGGTCACA+TGG 0.411120 5_2:-19056280 Msa0761580:CDS
AAATATAGGCATGAGCTTGC+GGG 0.415703 5_2:-19056648 Msa0761580:intron
GCTGGTCCTCTCCTTTGTGC+TGG 0.419633 5_2:-19056372 Msa0761580:CDS
CCATTTATCCACTTGTTCCT+GGG 0.426610 5_2:-19056896 Msa0761580:intron
AAATCGTAGAGGACTATATA+CGG 0.427344 5_2:+19056344 None:intergenic
GGTCTTCATATAGGTGTTGT+TGG 0.429161 5_2:-19056303 Msa0761580:CDS
GAGCATCCTAAGAAGGCCTT+TGG 0.436962 5_2:-19057673 Msa0761580:CDS
CGTGATGGAACCGTCACATA+TGG 0.443014 5_2:-19056468 Msa0761580:CDS
ATGGTACCTGAATCTGCTTT+GGG 0.444222 5_2:+19056142 None:intergenic
TCCATATGGCGAAGAATGAA+TGG 0.444643 5_2:-19056926 Msa0761580:CDS
TATCATAACTGAGTTAGAAA+TGG 0.450553 5_2:-19057716 Msa0761580:exon
AATTCAAGAGGTATGTTGTC+AGG 0.452593 5_2:+19056396 None:intergenic
GACGGTTCCATCACGATACT+TGG 0.454045 5_2:+19056476 None:intergenic
ATAGGTGTTGTTGGTCTTGG+TGG 0.454058 5_2:-19056294 Msa0761580:CDS
ATGGATACAGCATTAAGTTA+TGG 0.455512 5_2:+19057792 None:intergenic
AAAGTGGAGAAATTTAAAGT+TGG 0.458834 5_2:-19056603 Msa0761580:CDS
GCTGCAATTGGTACTTTGGA+TGG 0.470582 5_2:-19056030 Msa0761580:CDS
TTTAAAGTTGGAGACAAAGT+AGG 0.474364 5_2:-19056591 Msa0761580:CDS
ACCTTCTAGAGAAATTGAAA+GGG 0.479707 5_2:+19057617 None:intergenic
TGGGCAGCTAGAGATCATTC+TGG 0.480669 5_2:-19057649 Msa0761580:CDS
ATTGGTCTCTTGAAGTCTCA+TGG 0.481856 5_2:-19055964 Msa0761580:CDS
GACAAACCTGGTCTTCATAT+AGG 0.486648 5_2:-19056312 Msa0761580:CDS
AACCTTCTAGAGAAATTGAA+AGG 0.492744 5_2:+19057616 None:intergenic
ATGGAAATCTAAATTATCCT+TGG 0.493824 5_2:+19055297 None:intergenic
CCATATGGCGAAGAATGAAT+GGG 0.494659 5_2:-19056925 Msa0761580:CDS
AGCAATGGAGCGTCTTGCTA+AGG 0.496567 5_2:-19055557 Msa0761580:CDS
CATGGAAAGCTTATAATGCT+TGG 0.504127 5_2:-19055946 Msa0761580:CDS
ATGTCACTCTGATCTCCATA+TGG 0.507753 5_2:-19056940 Msa0761580:CDS
ATTAGTAGAGCATCCTAAGA+AGG 0.516837 5_2:-19057680 Msa0761580:CDS
TAGGTGTTGTTGGTCTTGGT+GGG 0.518566 5_2:-19056293 Msa0761580:CDS
ATATTAGCTGGAAGTCAAGT+TGG 0.518997 5_2:-19055673 Msa0761580:CDS
TCCTAAGAAGGCCTTTGGAT+GGG 0.520806 5_2:-19057668 Msa0761580:CDS
GAGAGGATGAACAGCTGAAA+CGG 0.539263 5_2:+19055996 None:intergenic
TACATCGCCTAACAAAGAAA+AGG 0.540053 5_2:-19056211 Msa0761580:CDS
TAAATATAGGCATGAGCTTG+CGG 0.545464 5_2:-19056649 Msa0761580:intron
GTATATTCAGGAAGCTGCAA+AGG 0.546317 5_2:+19055910 None:intergenic
CTCCACTTTACTTCCCACTT+CGG 0.546580 5_2:+19056617 None:intergenic
TGGAGGTTACTCCGACTCAA+TGG 0.547063 5_2:-19056448 Msa0761580:CDS
ATCCTAAGAAGGCCTTTGGA+TGG 0.552765 5_2:-19057669 Msa0761580:CDS
AACCGAAGTGGGAAGTAAAG+TGG 0.553032 5_2:-19056619 Msa0761580:CDS
TTTAAGTGTATCACTTGCCA+AGG 0.555268 5_2:-19055314 Msa0761580:three_prime_UTR
GGCAGAACATAATGTAAAGC+CGG 0.562457 5_2:-19055614 Msa0761580:CDS
GACTTCAAGAGACCAATCAT+TGG 0.565239 5_2:+19055970 None:intergenic
GCTGTGTTGACATAATCAAT+CGG 0.567158 5_2:+19055577 None:intergenic
GCAATGGAGCGTCTTGCTAA+GGG 0.567348 5_2:-19055556 Msa0761580:CDS
GGATACATTAGCATGATTCA+CGG 0.570294 5_2:-19055367 Msa0761580:three_prime_UTR
ATCTCTAGCTGCCCATCCAA+AGG 0.572515 5_2:+19057657 None:intergenic
AAAACATACCCAGGAACAAG+TGG 0.582294 5_2:+19056888 None:intergenic
CTCGTCTGCAACCATTGAGT+CGG 0.587984 5_2:+19056437 None:intergenic
AGTTGGAGACAAAGTAGGTG+TGG 0.589771 5_2:-19056586 Msa0761580:CDS
AGACCAATCATTGGTAAGAG+AGG 0.590479 5_2:+19055979 None:intergenic
AAGGAAGCAATAGAACACTT+AGG 0.590978 5_2:-19056192 Msa0761580:CDS
TTAGCTGGAAGTCAAGTTGG+AGG 0.591625 5_2:-19055670 Msa0761580:CDS
GATACATTAGCATGATTCAC+GGG 0.594702 5_2:-19055366 Msa0761580:three_prime_UTR
CAACAACATTATAATAACGA+TGG 0.598518 5_2:+19055278 None:intergenic
TAGCTGGAAGTCAAGTTGGA+GGG 0.608185 5_2:-19055669 Msa0761580:CDS
TGATTATGTCAACACAGCAA+TGG 0.611967 5_2:-19055572 Msa0761580:CDS
TAATGTAAAGCCGGATATCG+AGG 0.612913 5_2:-19055605 Msa0761580:CDS
GTTGGAGACAAAGTAGGTGT+GGG 0.615995 5_2:-19056585 Msa0761580:CDS
GCGGGTGTAGTAACCGAAGT+GGG 0.625376 5_2:-19056630 Msa0761580:CDS
TGCGGGTGTAGTAACCGAAG+TGG 0.637661 5_2:-19056631 Msa0761580:CDS
CCCAAATTTGTAGTCACATG+TGG 0.638631 5_2:-19056501 Msa0761580:CDS
AGAGGACCAGCAAATTCAAG+AGG 0.642176 5_2:+19056384 None:intergenic
GATGGAACCGTCACATATGG+AGG 0.644175 5_2:-19056465 Msa0761580:CDS
CCTTCTAGAGAAATTGAAAG+GGG 0.647504 5_2:+19057618 None:intergenic
ACAACACCTATATGAAGACC+AGG 0.655031 5_2:+19056306 None:intergenic
TGTGGTGCCAAGTATCGTGA+TGG 0.659003 5_2:-19056483 Msa0761580:CDS
GGAGTAACCTCCATATGTGA+CGG 0.672635 5_2:+19056458 None:intergenic
CACATGTGACTACAAATTTG+GGG 0.672670 5_2:+19056502 None:intergenic
GTGACACCAGCACAAAGGAG+AGG 0.674659 5_2:+19056366 None:intergenic
CATATGGCGAAGAATGAATG+GGG 0.702857 5_2:-19056924 Msa0761580:CDS
ATACGGTGACACCAGCACAA+AGG 0.718821 5_2:+19056361 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr5_2:19057160-19057179 None:intergenic 0.0%
!! TAATAACAAAGATAATAAAA+AGG + chr5_2:19056152-19056171 None:intergenic 10.0%
!!! AATACTATTGATAATTTTTT+AGG - chr5_2:19056957-19056976 Msa0761580:CDS 10.0%
!!! CTATCTATTCTTATTTATTT+TGG + chr5_2:19055625-19055644 None:intergenic 15.0%
!! CAAAATAAATAAGAATAGAT+AGG - chr5_2:19055623-19055642 Msa0761580:CDS 15.0%
!!! GTTTAATTTAGATGTAATTT+TGG + chr5_2:19055835-19055854 None:intergenic 15.0%
!! CATAGATCTAAATAATTTAA+GGG + chr5_2:19055956-19055975 None:intergenic 15.0%
!! ACATAGATCTAAATAATTTA+AGG + chr5_2:19055957-19055976 None:intergenic 15.0%
!! GTAATTGATGTAATAAATAT+AGG - chr5_2:19056347-19056366 Msa0761580:CDS 15.0%
!! TTAATTTCAAATTATTGACA+GGG - chr5_2:19057307-19057326 Msa0761580:intron 15.0%
!! ACGGTATTTATTTAGAAAAA+TGG + chr5_2:19055239-19055258 None:intergenic 20.0%
!! TATGCATTAAATTAATGAAG+AGG + chr5_2:19055433-19055452 None:intergenic 20.0%
!!! TTGTTTTAATCTTTTATCAG+TGG + chr5_2:19055531-19055550 None:intergenic 20.0%
!! ACTGATAAAAGATTAAAACA+AGG - chr5_2:19055530-19055549 Msa0761580:CDS 20.0%
!! AAAAGATTAAAACAAGGAAT+TGG - chr5_2:19055536-19055555 Msa0761580:CDS 20.0%
!! TAATATTTCTTGAATGTGTT+TGG - chr5_2:19055598-19055617 Msa0761580:CDS 20.0%
!! TAAATAAGAATAGATAGGTT+CGG - chr5_2:19055628-19055647 Msa0761580:CDS 20.0%
!!! ATCACTAATTTTTAATGATG+TGG + chr5_2:19055674-19055693 None:intergenic 20.0%
!!! AACTAACAAATTTTAAGTAG+AGG + chr5_2:19055750-19055769 None:intergenic 20.0%
!! ATTATTTAGATCTATGTTTC+TGG - chr5_2:19055960-19055979 Msa0761580:CDS 20.0%
!! GATACTAATTAATTCAACTT+TGG - chr5_2:19055982-19056001 Msa0761580:CDS 20.0%
!! CAAATGAATTACATATTGTA+TGG + chr5_2:19056889-19056908 None:intergenic 20.0%
!! ATATATATATTCCCTTAGAA+TGG - chr5_2:19057207-19057226 Msa0761580:intron 20.0%
!! GTTAATTTCAAATTATTGAC+AGG - chr5_2:19057306-19057325 Msa0761580:intron 20.0%
!! NNNNNNNNCTTAAACTTAGC+AGG - chr5_2:19057621-19057640 Msa0761580:CDS 20.0%
! TATCATAACTGAGTTAGAAA+TGG - chr5_2:19055293-19055312 Msa0761580:three_prime_UTR 25.0%
! ATTAATTTCCTTGAAACTAG+TGG + chr5_2:19055489-19055508 None:intergenic 25.0%
! TTTATCAGTGGAAAAAGAAA+AGG + chr5_2:19055519-19055538 None:intergenic 25.0%
!! AAGAATGTATGATGATAATG+CGG + chr5_2:19055858-19055877 None:intergenic 25.0%
!!! AATTCTAGTTTGGTTCATTT+TGG + chr5_2:19055893-19055912 None:intergenic 25.0%
!! GGCAAAAAATAATTCTAGTT+TGG + chr5_2:19055903-19055922 None:intergenic 25.0%
! ATAATTGAACCAAACTTCAT+TGG - chr5_2:19055925-19055944 Msa0761580:CDS 25.0%
! GAGTATTATATTTACAGACA+TGG + chr5_2:19056188-19056207 None:intergenic 25.0%
!! AAAGTGGAGAAATTTAAAGT+TGG - chr5_2:19056406-19056425 Msa0761580:CDS 25.0%
!!! ATAATTTTTTAGGCTGCAAT+TGG - chr5_2:19056967-19056986 Msa0761580:CDS 25.0%
! CCTTGAATTAAAGTATATTC+AGG + chr5_2:19057114-19057133 None:intergenic 25.0%
! CCTGAATATACTTTAATTCA+AGG - chr5_2:19057111-19057130 Msa0761580:intron 25.0%
!!! TCAAGAAATGATTGATTTTG+CGG - chr5_2:19057374-19057393 Msa0761580:intron 25.0%
!!! TATCGATTTGTGATTGATAT+TGG - chr5_2:19057486-19057505 Msa0761580:intron 25.0%
! ATGGAAATCTAAATTATCCT+TGG + chr5_2:19057715-19057734 None:intergenic 25.0%
! CAACAACATTATAATAACGA+TGG + chr5_2:19057734-19057753 None:intergenic 25.0%
ATGGATACAGCATTAAGTTA+TGG + chr5_2:19055220-19055239 None:intergenic 30.0%
CAAATTCAGGATGTGTTATA+CGG + chr5_2:19055258-19055277 None:intergenic 30.0%
TCAATGATATGCTCAAATTC+AGG + chr5_2:19055271-19055290 None:intergenic 30.0%
! ACCTTCTAGAGAAATTGAAA+GGG + chr5_2:19055395-19055414 None:intergenic 30.0%
! AACCTTCTAGAGAAATTGAA+AGG + chr5_2:19055396-19055415 None:intergenic 30.0%
GATTAAAACAAGGAATTGGA+TGG - chr5_2:19055540-19055559 Msa0761580:CDS 30.0%
! AACTTTTTGACACACATCAA+AGG - chr5_2:19055705-19055724 Msa0761580:intron 30.0%
! AGAATGTATGATGATAATGC+GGG + chr5_2:19055857-19055876 None:intergenic 30.0%
! TGAAGTTTGGTTCAATTATG+AGG + chr5_2:19055924-19055943 None:intergenic 30.0%
!! TTTGGTGCACCAAAATTTTA+GGG - chr5_2:19056000-19056019 Msa0761580:CDS 30.0%
TGAAAAAGATGTAGCATTCA+AGG - chr5_2:19056030-19056049 Msa0761580:CDS 30.0%
!! CATTCAAGGTTTTGTATTGT+GGG - chr5_2:19056044-19056063 Msa0761580:intron 30.0%
! AGCAAAAGTATATGCTACAT+TGG + chr5_2:19056327-19056346 None:intergenic 30.0%
! TTTAAAGTTGGAGACAAAGT+AGG - chr5_2:19056418-19056437 Msa0761580:CDS 30.0%
CAAGATTGTCATTACAATCT+TGG + chr5_2:19056477-19056496 None:intergenic 30.0%
AAATCGTAGAGGACTATATA+CGG + chr5_2:19056668-19056687 None:intergenic 30.0%
!!! TATAGTCCTCTACGATTTTT+TGG - chr5_2:19056670-19056689 Msa0761580:intron 30.0%
! ATTGCTTCCTTTTCTTTGTT+AGG + chr5_2:19056808-19056827 None:intergenic 30.0%
! ATTAGTAGAGCATCCTAAGA+AGG - chr5_2:19055329-19055348 Msa0761580:three_prime_UTR 35.0%
! CCTTCTAGAGAAATTGAAAG+GGG + chr5_2:19055394-19055413 None:intergenic 35.0%
ATTTCCTTGAAACTAGTGGA+GGG + chr5_2:19055485-19055504 None:intergenic 35.0%
AATTTCCTTGAAACTAGTGG+AGG + chr5_2:19055486-19055505 None:intergenic 35.0%
GTGTGTCAAAAAGTTAGTAG+CGG + chr5_2:19055700-19055719 None:intergenic 35.0%
!! CTTTGGTGCACCAAAATTTT+AGG - chr5_2:19055999-19056018 Msa0761580:CDS 35.0%
!! CACCAAAATTTTAGGGAAAC+AGG - chr5_2:19056007-19056026 Msa0761580:CDS 35.0%
! CACCTGTTTCCCTAAAATTT+TGG + chr5_2:19056012-19056031 None:intergenic 35.0%
!! GCATTCAAGGTTTTGTATTG+TGG - chr5_2:19056043-19056062 Msa0761580:intron 35.0%
TAAATATAGGCATGAGCTTG+CGG - chr5_2:19056360-19056379 Msa0761580:CDS 35.0%
CACATGTGACTACAAATTTG+GGG + chr5_2:19056510-19056529 None:intergenic 35.0%
CCACATGTGACTACAAATTT+GGG + chr5_2:19056511-19056530 None:intergenic 35.0%
ACCACATGTGACTACAAATT+TGG + chr5_2:19056512-19056531 None:intergenic 35.0%
! AATTCAAGAGGTATGTTGTC+AGG + chr5_2:19056616-19056635 None:intergenic 35.0%
AACATACCTCTTGAATTTGC+TGG - chr5_2:19056619-19056638 Msa0761580:CDS 35.0%
! GTGAAATTTGCCAAAGCTTT+TGG - chr5_2:19056754-19056773 Msa0761580:intron 35.0%
GTTAGGCGATGTACTAATTA+CGG + chr5_2:19056791-19056810 None:intergenic 35.0%
TACATCGCCTAACAAAGAAA+AGG - chr5_2:19056798-19056817 Msa0761580:intron 35.0%
AAGGAAGCAATAGAACACTT+AGG - chr5_2:19056817-19056836 Msa0761580:intron 35.0%
CATGGAAAGCTTATAATGCT+TGG - chr5_2:19057063-19057082 Msa0761580:intron 35.0%
ATATTCCCTTAGAATGGTTC+AGG - chr5_2:19057213-19057232 Msa0761580:intron 35.0%
TTTCTCCTGAACCATTCTAA+GGG + chr5_2:19057221-19057240 None:intergenic 35.0%
! TTTTCTCCTGAACCATTCTA+AGG + chr5_2:19057222-19057241 None:intergenic 35.0%
ACAGGGAGAAAAATATTAGC+TGG - chr5_2:19057324-19057343 Msa0761580:intron 35.0%
ATATTAGCTGGAAGTCAAGT+TGG - chr5_2:19057336-19057355 Msa0761580:intron 35.0%
! GCTGTGTTGACATAATCAAT+CGG + chr5_2:19057435-19057454 None:intergenic 35.0%
TGATTATGTCAACACAGCAA+TGG - chr5_2:19057437-19057456 Msa0761580:intron 35.0%
GGATACATTAGCATGATTCA+CGG - chr5_2:19057642-19057661 Msa0761580:CDS 35.0%
GATACATTAGCATGATTCAC+GGG - chr5_2:19057643-19057662 Msa0761580:CDS 35.0%
TTTAAGTGTATCACTTGCCA+AGG - chr5_2:19057695-19057714 Msa0761580:CDS 35.0%
CCCCTTTCAATTTCTCTAGA+AGG - chr5_2:19055391-19055410 Msa0761580:intron 40.0%
TTTCCTTGAAACTAGTGGAG+GGG + chr5_2:19055484-19055503 None:intergenic 40.0%
!! AAGTAGAGGCATCAAGATGT+TGG + chr5_2:19055736-19055755 None:intergenic 40.0%
ATGTCACTCTGATCTCCATA+TGG - chr5_2:19056069-19056088 Msa0761580:intron 40.0%
TCCATATGGCGAAGAATGAA+TGG - chr5_2:19056083-19056102 Msa0761580:intron 40.0%
CCATATGGCGAAGAATGAAT+GGG - chr5_2:19056084-19056103 Msa0761580:intron 40.0%
CATATGGCGAAGAATGAATG+GGG - chr5_2:19056085-19056104 Msa0761580:intron 40.0%
TCCATTTATCCACTTGTTCC+TGG - chr5_2:19056112-19056131 Msa0761580:intron 40.0%
CCATTTATCCACTTGTTCCT+GGG - chr5_2:19056113-19056132 Msa0761580:intron 40.0%
AAAACATACCCAGGAACAAG+TGG + chr5_2:19056124-19056143 None:intergenic 40.0%
AAGGAGTTCAAAACATACCC+AGG + chr5_2:19056133-19056152 None:intergenic 40.0%
AAATATAGGCATGAGCTTGC+GGG - chr5_2:19056361-19056380 Msa0761580:CDS 40.0%
CCCAAATTTGTAGTCACATG+TGG - chr5_2:19056508-19056527 Msa0761580:CDS 40.0%
TCGAGTCCAAAAAATCGTAG+AGG + chr5_2:19056679-19056698 None:intergenic 40.0%
!!! TTTTTTGGACTCGACAAACC+TGG - chr5_2:19056685-19056704 Msa0761580:intron 40.0%
! GACAAACCTGGTCTTCATAT+AGG - chr5_2:19056697-19056716 Msa0761580:intron 40.0%
ACAACACCTATATGAAGACC+AGG + chr5_2:19056706-19056725 None:intergenic 40.0%
! GGTCTTCATATAGGTGTTGT+TGG - chr5_2:19056706-19056725 Msa0761580:intron 40.0%
!! CATATAGGTGTTGTTGGTCT+TGG - chr5_2:19056712-19056731 Msa0761580:intron 40.0%
CACATTAGCACCAAAAGCTT+TGG + chr5_2:19056767-19056786 None:intergenic 40.0%
ATGGTACCTGAATCTGCTTT+GGG + chr5_2:19056870-19056889 None:intergenic 40.0%
TATGGTACCTGAATCTGCTT+TGG + chr5_2:19056871-19056890 None:intergenic 40.0%
TTAGGCTGCAATTGGTACTT+TGG - chr5_2:19056975-19056994 Msa0761580:CDS 40.0%
CATCCTCTCTTACCAATGAT+TGG - chr5_2:19057027-19057046 Msa0761580:intron 40.0%
AGACCAATCATTGGTAAGAG+AGG + chr5_2:19057033-19057052 None:intergenic 40.0%
GACTTCAAGAGACCAATCAT+TGG + chr5_2:19057042-19057061 None:intergenic 40.0%
! ATTGGTCTCTTGAAGTCTCA+TGG - chr5_2:19057045-19057064 Msa0761580:intron 40.0%
GTATATTCAGGAAGCTGCAA+AGG + chr5_2:19057102-19057121 None:intergenic 40.0%
!! AAGTCAAGTTGGAGGGTTAA+AGG - chr5_2:19057347-19057366 Msa0761580:intron 40.0%
GGCAGAACATAATGTAAAGC+CGG - chr5_2:19057395-19057414 Msa0761580:intron 40.0%
TAATGTAAAGCCGGATATCG+AGG - chr5_2:19057404-19057423 Msa0761580:intron 40.0%
ATCCTAAGAAGGCCTTTGGA+TGG - chr5_2:19055340-19055359 Msa0761580:three_prime_UTR 45.0%
TCCTAAGAAGGCCTTTGGAT+GGG - chr5_2:19055341-19055360 Msa0761580:three_prime_UTR 45.0%
TTCCTTGAAACTAGTGGAGG+GGG + chr5_2:19055483-19055502 None:intergenic 45.0%
!! AGGGTGTTGCCAATGAAGTT+TGG + chr5_2:19055937-19055956 None:intergenic 45.0%
CCCATTCATTCTTCGCCATA+TGG + chr5_2:19056087-19056106 None:intergenic 45.0%
CCCAGGAACAAGTGGATAAA+TGG + chr5_2:19056116-19056135 None:intergenic 45.0%
AACCGAAGTGGGAAGTAAAG+TGG - chr5_2:19056390-19056409 Msa0761580:CDS 45.0%
CTCCACTTTACTTCCCACTT+CGG + chr5_2:19056395-19056414 None:intergenic 45.0%
AGTTGGAGACAAAGTAGGTG+TGG - chr5_2:19056423-19056442 Msa0761580:CDS 45.0%
GTTGGAGACAAAGTAGGTGT+GGG - chr5_2:19056424-19056443 Msa0761580:CDS 45.0%
GGAGTAACCTCCATATGTGA+CGG + chr5_2:19056554-19056573 None:intergenic 45.0%
AGAGGACCAGCAAATTCAAG+AGG + chr5_2:19056628-19056647 None:intergenic 45.0%
!! ATAGGTGTTGTTGGTCTTGG+TGG - chr5_2:19056715-19056734 Msa0761580:intron 45.0%
!! TAGGTGTTGTTGGTCTTGGT+GGG - chr5_2:19056716-19056735 Msa0761580:intron 45.0%
TAGTGACCCAAAGCAGATTC+AGG - chr5_2:19056861-19056880 Msa0761580:intron 45.0%
GCTGCAATTGGTACTTTGGA+TGG - chr5_2:19056979-19056998 Msa0761580:CDS 45.0%
GAGAGGATGAACAGCTGAAA+CGG + chr5_2:19057016-19057035 None:intergenic 45.0%
!! TTAGCTGGAAGTCAAGTTGG+AGG - chr5_2:19057339-19057358 Msa0761580:intron 45.0%
!! TAGCTGGAAGTCAAGTTGGA+GGG - chr5_2:19057340-19057359 Msa0761580:intron 45.0%
ATCGGAACAACCTCGATATC+CGG + chr5_2:19057417-19057436 None:intergenic 45.0%
!! TTAATTAAAATATAAATGAA+AGG - chr5_2:19056287-19056306 Msa0761580:CDS 5.0%
!! TAATTAAAATATAAATGAAA+GGG - chr5_2:19056288-19056307 Msa0761580:CDS 5.0%
GAGCATCCTAAGAAGGCCTT+TGG - chr5_2:19055336-19055355 Msa0761580:three_prime_UTR 50.0%
ATCTCTAGCTGCCCATCCAA+AGG + chr5_2:19055355-19055374 None:intergenic 50.0%
TGGGCAGCTAGAGATCATTC+TGG - chr5_2:19055360-19055379 Msa0761580:three_prime_UTR 50.0%
! TTCCCCCTCCACTAGTTTCA+AGG - chr5_2:19055478-19055497 Msa0761580:intron 50.0%
! TGTGGTGCCAAGTATCGTGA+TGG - chr5_2:19056526-19056545 Msa0761580:CDS 50.0%
GACGGTTCCATCACGATACT+TGG + chr5_2:19056536-19056555 None:intergenic 50.0%
! CGTGATGGAACCGTCACATA+TGG - chr5_2:19056541-19056560 Msa0761580:CDS 50.0%
GATGGAACCGTCACATATGG+AGG - chr5_2:19056544-19056563 Msa0761580:CDS 50.0%
TGGAGGTTACTCCGACTCAA+TGG - chr5_2:19056561-19056580 Msa0761580:CDS 50.0%
CTCGTCTGCAACCATTGAGT+CGG + chr5_2:19056575-19056594 None:intergenic 50.0%
ATACGGTGACACCAGCACAA+AGG + chr5_2:19056651-19056670 None:intergenic 50.0%
! AGCAATGGAGCGTCTTGCTA+AGG - chr5_2:19057452-19057471 Msa0761580:intron 50.0%
! GCAATGGAGCGTCTTGCTAA+GGG - chr5_2:19057453-19057472 Msa0761580:intron 50.0%
GCCCATCCAAAGGCCTTCTT+AGG + chr5_2:19055345-19055364 None:intergenic 55.0%
TGCGGGTGTAGTAACCGAAG+TGG - chr5_2:19056378-19056397 Msa0761580:CDS 55.0%
GCGGGTGTAGTAACCGAAGT+GGG - chr5_2:19056379-19056398 Msa0761580:CDS 55.0%
GTGACACCAGCACAAAGGAG+AGG + chr5_2:19056646-19056665 None:intergenic 55.0%
!! GTTGTTGGTCTTGGTGGGCT+TGG - chr5_2:19056721-19056740 Msa0761580:intron 55.0%
!! TCTTGGTGGGCTTGGTCACA+TGG - chr5_2:19056729-19056748 Msa0761580:intron 55.0%
GCTGGTCCTCTCCTTTGTGC+TGG - chr5_2:19056637-19056656 Msa0761580:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 19055207 19057824 19055207 ID=Msa0761580;Name=Msa0761580
chr5_2 mRNA 19055207 19057824 19055207 ID=Msa0761580-mRNA-1;Parent=Msa0761580;Name=Msa0761580-mRNA-1;_AED=0.11;_eAED=0.11;_QI=105|1|1|1|0.8|0.66|6|191|362
chr5_2 exon 19055207 19055402 19055207 ID=Msa0761580-mRNA-1:exon:8170;Parent=Msa0761580-mRNA-1
chr5_2 exon 19055503 19055703 19055503 ID=Msa0761580-mRNA-1:exon:8169;Parent=Msa0761580-mRNA-1
chr5_2 exon 19055899 19056052 19055899 ID=Msa0761580-mRNA-1:exon:8168;Parent=Msa0761580-mRNA-1
chr5_2 exon 19056149 19056662 19056149 ID=Msa0761580-mRNA-1:exon:8167;Parent=Msa0761580-mRNA-1
chr5_2 exon 19056897 19057010 19056897 ID=Msa0761580-mRNA-1:exon:8166;Parent=Msa0761580-mRNA-1
chr5_2 exon 19057619 19057824 19057619 ID=Msa0761580-mRNA-1:exon:8165;Parent=Msa0761580-mRNA-1
chr5_2 five_prime_UTR 19057720 19057824 19057720 ID=Msa0761580-mRNA-1:five_prime_utr;Parent=Msa0761580-mRNA-1
chr5_2 CDS 19057619 19057719 19057619 ID=Msa0761580-mRNA-1:cds;Parent=Msa0761580-mRNA-1
chr5_2 CDS 19056897 19057010 19056897 ID=Msa0761580-mRNA-1:cds;Parent=Msa0761580-mRNA-1
chr5_2 CDS 19056149 19056662 19056149 ID=Msa0761580-mRNA-1:cds;Parent=Msa0761580-mRNA-1
chr5_2 CDS 19055899 19056052 19055899 ID=Msa0761580-mRNA-1:cds;Parent=Msa0761580-mRNA-1
chr5_2 CDS 19055503 19055703 19055503 ID=Msa0761580-mRNA-1:cds;Parent=Msa0761580-mRNA-1
chr5_2 CDS 19055398 19055402 19055398 ID=Msa0761580-mRNA-1:cds;Parent=Msa0761580-mRNA-1
chr5_2 three_prime_UTR 19055207 19055397 19055207 ID=Msa0761580-mRNA-1:three_prime_utr;Parent=Msa0761580-mRNA-1
Gene Sequence

>Msa0761580

ATGGCAACAGAAACTAAATTAGTAGAGCATCCTAAGAAGGCCTTTGGATGGGCAGCTAGAGATCATTCTGGTGTTCTCTCCCCTTTCAATTTCTCTAGAAGGGAAACAGGTGAAAAAGATGTAGCATTCAAGGTTTTGTATTGTGGGATATGTCACTCTGATCTCCATATGGCGAAGAATGAATGGGGCACTTCCATTTATCCACTTGTTCCTGGGCATGAGCTTGCGGGTGTAGTAACCGAAGTGGGAAGTAAAGTGGAGAAATTTAAAGTTGGAGACAAAGTAGGTGTGGGCTACTTGATTGATTCATGTCGATCATGCCAAGATTGTAATGACAATCTTGAGAATTACTGCCCCAAATTTGTAGTCACATGTGGTGCCAAGTATCGTGATGGAACCGTCACATATGGAGGTTACTCCGACTCAATGGTTGCAGACGAGCACTTTGTGATTCGCATTCCTGACAACATACCTCTTGAATTTGCTGGTCCTCTCCTTTGTGCTGGTGTCACCGTATATAGTCCTCTACGATTTTTTGGACTCGACAAACCTGGTCTTCATATAGGTGTTGTTGGTCTTGGTGGGCTTGGTCACATGGCTGTGAAATTTGCCAAAGCTTTTGGTGCTAATGTGACCGTAATTAGTACATCGCCTAACAAAGAAAAGGAAGCAATAGAACACTTAGGAGCTGATTCATTTCTGATAAGTAGTGACCCAAAGCAGATTCAGGCTGCAATTGGTACTTTGGATGGTATTATTGACACCGTTTCAGCTGTTCATCCTCTCTTACCAATGATTGGTCTCTTGAAGTCTCATGGAAAGCTTATAATGCTTGGTGTAATAGTACAGCCTTTGCAGCTTCCTGAATATACTTTAATTCAAGGGAGAAAAATATTAGCTGGAAGTCAAGTTGGAGGGTTAAAGGAGACTCAAGAAATGATTGATTTTGCGGCAGAACATAATGTAAAGCCGGATATCGAGGTTGTTCCGATTGATTATGTCAACACAGCAATGGAGCGTCTTGCTAAGGGAGACGTGAAATATCGATTTGTGATTGATATTGGAAACACATTGAAACCAAGCTCTTAA

Protein sequence

>Msa0761580

MATETKLVEHPKKAFGWAARDHSGVLSPFNFSRRETGEKDVAFKVLYCGICHSDLHMAKNEWGTSIYPLVPGHELAGVVTEVGSKVEKFKVGDKVGVGYLIDSCRSCQDCNDNLENYCPKFVVTCGAKYRDGTVTYGGYSDSMVADEHFVIRIPDNIPLEFAGPLLCAGVTVYSPLRFFGLDKPGLHIGVVGLGGLGHMAVKFAKAFGANVTVISTSPNKEKEAIEHLGADSFLISSDPKQIQAAIGTLDGIIDTVSAVHPLLPMIGLLKSHGKLIMLGVIVQPLQLPEYTLIQGRKILAGSQVGGLKETQEMIDFAAEHNVKPDIEVVPIDYVNTAMERLAKGDVKYRFVIDIGNTLKPSS*