AlfalfaGEDB | Msa0037480

M. sativa cultivar zhongmu-4 / Msa0037480

KEGG: K01714
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008840 GO:0009507 GO:0009536 GO:0016829 GO:0016835 GO:0016836 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF00701.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0037480	sp\|Q42800\|DAPA_SOYBN	89.329	328	35	0	39	366	5	332	0.0	616

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037480	Msa0040220	0.806483	8.047316e-50	-8.615850e-47
Msa0037480	Msa0087910	0.810343	1.208129e-50	-8.615850e-47
Msa0037480	Msa0129130	0.972758	2.723487e-135	-8.615850e-47
Msa0037480	Msa0132460	0.812372	4.381732e-51	-8.615850e-47
Msa0037480	Msa0134580	0.813021	3.160149e-51	-8.615850e-47
Msa0037480	Msa0174940	0.866321	3.105138e-65	-8.615850e-47
Msa0037480	Msa0182050	0.814894	1.221107e-51	-8.615850e-47
Msa0037480	Msa0277600	0.811196	7.900633e-51	-8.615850e-47
Msa0037480	Msa0426250	0.806104	9.672214e-50	-8.615850e-47
Msa0037480	Msa0708630	0.813595	2.363565e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0037480	MtrunA17_Chr1g0195781	98.907	366	4	0	1	366	1	366	0.0	756
Msa0037480	MtrunA17_Chr7g0245941	92.350	366	28	0	1	366	1	366	0.0	721
Msa0037480	MtrunA17_Chr8g0351631	64.481	366	122	1	1	366	83	440	1.33e-178	503
Msa0037480	MtrunA17_Chr8g0351611	64.499	369	121	4	1	366	1	362	3.04e-170	479
Msa0037480	MtrunA17_Chr8g0351581	69.453	311	94	1	56	366	21	330	4.33e-163	459
Msa0037480	MtrunA17_Chr8g0351641	63.462	312	109	1	55	366	1	307	3.76e-148	421

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0037480	AT2G45440.1	75.410	366	89	1	1	366	1	365	581
Msa0037480	AT3G60880.2	74.590	366	92	1	1	366	1	365	568
Msa0037480	AT3G60880.1	74.317	366	92	1	1	366	1	364	566

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Find 113 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCCATACCTACCTGA+TGG	0.627623	1_1:+66502831	Msa0037480:CDS
AAATCCCATTGGTTTGAACA+CGG	0.620889	1_1:+66503511	Msa0037480:CDS
AACACGGCTCTTGCTCAACT+TGG	0.407658	1_1:+66503527	Msa0037480:CDS
AACCAATGGGATTTGGCATG+TGG	0.510972	1_1:-66503502	None:intergenic
AACCGCAAAACCTTGCTCAG+TGG	0.673625	1_1:-66503066	None:intergenic
AACTTGAAATCGAGCTGCTG+TGG	0.560585	1_1:-66501635	None:intergenic
AAGAATAGAATTTGCCAATT+TGG	0.151527	1_1:+66503601	Msa0037480:CDS
AAGAGCCGTGTTCAAACCAA+TGG	0.526094	1_1:-66503516	None:intergenic
AAGAGCTTAGAATTCAATGT+AGG	0.522936	1_1:-66503458	None:intergenic
AAGGATACAATAAGTCTACA+AGG	0.625433	1_1:-66503745	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACTACTAACAAAAACACC+AGG	+	chr1_1:66501737-66501756	Msa0037480:CDS	30.0%
GAAAATGGAAAATTTGAACC+TGG	-	chr1_1:66501758-66501777	None:intergenic	30.0%
AGCACAATCAATATCAATCA+CGG	-	chr1_1:66502114-66502133	None:intergenic	30.0%
GTTTGTCTGTATGATTATTC+AGG	+	chr1_1:66502184-66502203	Msa0037480:intron	30.0%
CTTGCTTATTTCCACTAATT+TGG	+	chr1_1:66502509-66502528	Msa0037480:intron	30.0%
ACAAAAGCAACAACACAAAT+AGG	-	chr1_1:66502710-66502729	None:intergenic	30.0%
ATCAAGGTTATTGGAAATAC+TGG	+	chr1_1:66503014-66503033	Msa0037480:CDS	30.0%
CATAGTAAGGGTTTATATGA+AGG	-	chr1_1:66503106-66503125	None:intergenic	30.0%
CTTCATATAAACCCTTACTA+TGG	+	chr1_1:66503104-66503123	Msa0037480:CDS	30.0%
AAGAGCTTAGAATTCAATGT+AGG	-	chr1_1:66503461-66503480	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	66501536	66504051	66501536	ID=Msa0037480;Name=Msa0037480
chr1_1	mRNA	66501536	66504051	66501536	ID=Msa0037480-mRNA-1;Parent=Msa0037480;Name=Msa0037480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=131\|1\|1\|1\|1\|1\|3\|339\|366
chr1_1	exon	66501536	66501758	66501536	ID=Msa0037480-mRNA-1:exon:21499;Parent=Msa0037480-mRNA-1
chr1_1	exon	66502206	66502286	66502206	ID=Msa0037480-mRNA-1:exon:21500;Parent=Msa0037480-mRNA-1
chr1_1	exon	66502785	66504051	66502785	ID=Msa0037480-mRNA-1:exon:21501;Parent=Msa0037480-mRNA-1
chr1_1	five_prime_UTR	66501536	66501666	66501536	ID=Msa0037480-mRNA-1:five_prime_utr;Parent=Msa0037480-mRNA-1
chr1_1	CDS	66501667	66501758	66501667	ID=Msa0037480-mRNA-1:cds;Parent=Msa0037480-mRNA-1
chr1_1	CDS	66502206	66502286	66502206	ID=Msa0037480-mRNA-1:cds;Parent=Msa0037480-mRNA-1
chr1_1	CDS	66502785	66503712	66502785	ID=Msa0037480-mRNA-1:cds;Parent=Msa0037480-mRNA-1
chr1_1	three_prime_UTR	66503713	66504051	66503713	ID=Msa0037480-mRNA-1:three_prime_utr;Parent=Msa0037480-mRNA-1

Gene Sequence

>Msa0037480

ATGGCTACATTGAAGAGCTATACTGGTGTCTGCTTCAGAGGATCCGGTTTTCCGGTTCATCCTTCCGATCTTACTACTAACAAAAACACCAGGAACTCTTACTGGAGGCCTACACAAGCAGCTGTGAAATCCAATTTCCACCTCCCAATGCGGAGTTTTGAGATGAAAAATAGGACTTGTACAGAGGACATTAAGTGTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGATTTGATCTTGAAGCATACGATGCCTTGGTAAATATGCAGATCGAGAGTGGAGTTGAAGGTGTTATTGTTGGTGGCACAACTGGTGAAGGTCAATTAATGAGCTGGGAAGAGCACATAATGCTTATTGCGCACACAGTTAATTGTTTTGGTGGGAAAATCAAGGTTATTGGAAATACTGGAAGTAACTCGACAAGGGAAGCAATTCATGCCACTGAGCAAGGTTTTGCGGTTGGAATGCATGGTGCCCTTCATATAAACCCTTACTATGGCAAAACCTCATTGGATGGTATGGTTGCTCACTTTCAAAGTGTGCTTTCCATGGGACCCACGATCATATATAATGTGCCTTCACGAACTGGTCAAGACATTCCACCGCATGTAATTCAAAACTTAGCTCAAAATACTTGCTTGGCTGGTGTCAAGGAATGTGTGGGAAATGACAGGATCAAAGAGTATACTGATAATAGAATCGTTGTGTGGAGCGGGAACGATGATCAATGCCATGATGCTAGATGGGGTTATGGAGCTACTGGAGTGATATCTGTTGCAAGCAATCTGATTCCTGGTTTAATGCGAGAACTCATGTTTGAGGGCAAAAATCCTACATTGAATTCTAAGCTCTTGCCTTTGATTGACTGGCTTTTCCACATGCCAAATCCCATTGGTTTGAACACGGCTCTTGCTCAACTTGGAGTTGTCAGGCCAGTTTTCAGGTTGCCATTTGTACCTCTCCCATTAGAGAAAAGAATAGAATTTGCCAATTTGGTGAAGGAAATAGGTCGTCAACATTTTGTTGGAACTGAAGACGTTCAGGTTCTTGATGACAACGACTTTTTCTTGGTTAGTCGATATTAA

Protein sequence

>Msa0037480

MATLKSYTGVCFRGSGFPVHPSDLTTNKNTRNSYWRPTQAAVKSNFHLPMRSFEMKNRTCTEDIKCLRLITAIKTPYLPDGRFDLEAYDALVNMQIESGVEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHGALHINPYYGKTSLDGMVAHFQSVLSMGPTIIYNVPSRTGQDIPPHVIQNLAQNTCLAGVKECVGNDRIKEYTDNRIVVWSGNDDQCHDARWGYGATGVISVASNLIPGLMRELMFEGKNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPLEKRIEFANLVKEIGRQHFVGTEDVQVLDDNDFFLVSRY*