Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037480 | sp|Q42800|DAPA_SOYBN | 89.329 | 328 | 35 | 0 | 39 | 366 | 5 | 332 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037480 | Msa0040220 | 0.806483 | 8.047316e-50 | -8.615850e-47 |
| Msa0037480 | Msa0087910 | 0.810343 | 1.208129e-50 | -8.615850e-47 |
| Msa0037480 | Msa0129130 | 0.972758 | 2.723487e-135 | -8.615850e-47 |
| Msa0037480 | Msa0132460 | 0.812372 | 4.381732e-51 | -8.615850e-47 |
| Msa0037480 | Msa0134580 | 0.813021 | 3.160149e-51 | -8.615850e-47 |
| Msa0037480 | Msa0174940 | 0.866321 | 3.105138e-65 | -8.615850e-47 |
| Msa0037480 | Msa0182050 | 0.814894 | 1.221107e-51 | -8.615850e-47 |
| Msa0037480 | Msa0277600 | 0.811196 | 7.900633e-51 | -8.615850e-47 |
| Msa0037480 | Msa0426250 | 0.806104 | 9.672214e-50 | -8.615850e-47 |
| Msa0037480 | Msa0708630 | 0.813595 | 2.363565e-51 | -8.615850e-47 |
| Msa0037480 | Msa0789930 | 0.828637 | 8.048056e-55 | -8.615850e-47 |
| Msa0037480 | Msa1341780 | 0.827289 | 1.698160e-54 | -8.615850e-47 |
| Msa0037480 | Msa1424570 | 0.806006 | 1.014368e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037480 | MtrunA17_Chr1g0195781 | 98.907 | 366 | 4 | 0 | 1 | 366 | 1 | 366 | 0.0 | 756 |
| Msa0037480 | MtrunA17_Chr7g0245941 | 92.350 | 366 | 28 | 0 | 1 | 366 | 1 | 366 | 0.0 | 721 |
| Msa0037480 | MtrunA17_Chr8g0351631 | 64.481 | 366 | 122 | 1 | 1 | 366 | 83 | 440 | 1.33e-178 | 503 |
| Msa0037480 | MtrunA17_Chr8g0351611 | 64.499 | 369 | 121 | 4 | 1 | 366 | 1 | 362 | 3.04e-170 | 479 |
| Msa0037480 | MtrunA17_Chr8g0351581 | 69.453 | 311 | 94 | 1 | 56 | 366 | 21 | 330 | 4.33e-163 | 459 |
| Msa0037480 | MtrunA17_Chr8g0351641 | 63.462 | 312 | 109 | 1 | 55 | 366 | 1 | 307 | 3.76e-148 | 421 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037480 | AT2G45440.1 | 75.410 | 366 | 89 | 1 | 1 | 366 | 1 | 365 | 0.0 | 581 |
| Msa0037480 | AT3G60880.2 | 74.590 | 366 | 92 | 1 | 1 | 366 | 1 | 365 | 0.0 | 568 |
| Msa0037480 | AT3G60880.1 | 74.317 | 366 | 92 | 1 | 1 | 366 | 1 | 364 | 0.0 | 566 |
Find 113 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTAGGTTGTTAGTTATTA+TGG | 0.148350 | 1_1:+66503712 | Msa0037480:exon |
| AAGAATAGAATTTGCCAATT+TGG | 0.151527 | 1_1:+66503601 | Msa0037480:CDS |
| CCGCATTGGGAGGTGGAAAT+TGG | 0.197311 | 1_1:-66502244 | None:intergenic |
| ACCTATTTCCTTCACCAAAT+TGG | 0.206485 | 1_1:-66503615 | None:intergenic |
| GGTGGGAAAATCAAGGTTAT+TGG | 0.223073 | 1_1:+66503005 | Msa0037480:CDS |
| TGGTTAGTCGATATTAATTT+AGG | 0.225709 | 1_1:+66503696 | Msa0037480:exon |
| CTTGTACTGGTTACTTTGTT+TGG | 0.243493 | 1_1:+66503855 | Msa0037480:three_prime_UTR |
| GATTATTCAGGAACTCTTAC+TGG | 0.297793 | 1_1:+66502196 | Msa0037480:intron |
| ATCAAGGTTATTGGAAATAC+TGG | 0.303578 | 1_1:+66503014 | Msa0037480:CDS |
| GCCAATTTGGTGAAGGAAAT+AGG | 0.310672 | 1_1:+66503614 | Msa0037480:CDS |
| ATAGAAATTATGAAATGAAT+TGG | 0.315357 | 1_1:-66501538 | None:intergenic |
| GCGCACACAGTTAATTGTTT+TGG | 0.323823 | 1_1:+66502984 | Msa0037480:CDS |
| GTTGCAAGCAATCTGATTCC+TGG | 0.342044 | 1_1:+66503401 | Msa0037480:CDS |
| TTGTTAGTTATTATGGAGTT+AGG | 0.355813 | 1_1:+66503719 | Msa0037480:three_prime_UTR |
| TAAGATCTTGTTTCTTGTAC+TGG | 0.369891 | 1_1:+66503842 | Msa0037480:three_prime_UTR |
| GTGTTCAAACCAATGGGATT+TGG | 0.372649 | 1_1:-66503509 | None:intergenic |
| TGTTGGAACTGAAGACGTTC+AGG | 0.373512 | 1_1:+66503649 | Msa0037480:CDS |
| AGCTCTTGCCTTTGATTGAC+TGG | 0.378010 | 1_1:+66503474 | Msa0037480:CDS |
| GCTACATTGAAGAGCTATAC+TGG | 0.379000 | 1_1:+66501670 | Msa0037480:CDS |
| ATCAATGCCATGATGCTAGA+TGG | 0.385109 | 1_1:+66503351 | Msa0037480:CDS |
| TTGCTCAACTTGGAGTTGTC+AGG | 0.401383 | 1_1:+66503537 | Msa0037480:CDS |
| ACAAATGGCAACCTGAAAAC+TGG | 0.401923 | 1_1:-66503560 | None:intergenic |
| TTTCATAATTTCTATCAGTT+AGG | 0.402264 | 1_1:+66501546 | Msa0037480:five_prime_UTR |
| CTTTCAAAGTGTGCTTTCCA+TGG | 0.406034 | 1_1:+66503157 | Msa0037480:CDS |
| AACACGGCTCTTGCTCAACT+TGG | 0.407658 | 1_1:+66503527 | Msa0037480:CDS |
| GGAAGGATGAACCGGAAAAC+CGG | 0.409763 | 1_1:-66501710 | None:intergenic |
| TCATCTCAAAACTCCGCATT+GGG | 0.420171 | 1_1:-66502257 | None:intergenic |
| GACTTATTGTATCCTTTCTC+CGG | 0.423830 | 1_1:+66503752 | Msa0037480:three_prime_UTR |
| CTTCATATAAACCCTTACTA+TGG | 0.428403 | 1_1:+66503104 | Msa0037480:CDS |
| GGAGTTGAAGGTGTTATTGT+TGG | 0.429517 | 1_1:+66502906 | Msa0037480:CDS |
| AATTATGTGTGTTGTTGTGC+TGG | 0.436086 | 1_1:+66503800 | Msa0037480:three_prime_UTR |
| CATAGTAAGGGTTTATATGA+AGG | 0.438848 | 1_1:-66503103 | None:intergenic |
| TTACTATGGCAAAACCTCAT+TGG | 0.439136 | 1_1:+66503118 | Msa0037480:CDS |
| TATAATGTGCCTTCACGAAC+TGG | 0.441534 | 1_1:+66503194 | Msa0037480:CDS |
| GTTATTGTTGGTGGCACAAC+TGG | 0.447799 | 1_1:+66502918 | Msa0037480:CDS |
| CTTAGCTCAAAATACTTGCT+TGG | 0.461095 | 1_1:+66503247 | Msa0037480:CDS |
| GCTCAAAATACTTGCTTGGC+TGG | 0.463469 | 1_1:+66503251 | Msa0037480:CDS |
| TTCATCTCAAAACTCCGCAT+TGG | 0.466411 | 1_1:-66502258 | None:intergenic |
| GTGAAGGTCAATTAATGAGC+TGG | 0.470889 | 1_1:+66502940 | Msa0037480:CDS |
| ATGCGAGAACTCATGTTTGA+GGG | 0.476788 | 1_1:+66503428 | Msa0037480:CDS |
| AGATGGGGTTATGGAGCTAC+TGG | 0.478069 | 1_1:+66503368 | Msa0037480:CDS |
| TCAAGATCAAATCGACCATC+AGG | 0.480309 | 1_1:-66502846 | None:intergenic |
| GTTGAAGGTGTTATTGTTGG+TGG | 0.483414 | 1_1:+66502909 | Msa0037480:CDS |
| TAGAAATTATGAAATGAATT+GGG | 0.484201 | 1_1:-66501537 | None:intergenic |
| GGTGTCTGCTTCAGAGGATC+CGG | 0.484695 | 1_1:+66501691 | Msa0037480:CDS |
| CAAAACTCCGCATTGGGAGG+TGG | 0.487292 | 1_1:-66502251 | None:intergenic |
| CATGATGCTAGATGGGGTTA+TGG | 0.493610 | 1_1:+66503359 | Msa0037480:CDS |
| TCATTGTAATAATGTTCCAT+TGG | 0.499103 | 1_1:-66504008 | None:intergenic |
| TACTTGCTTGGCTGGTGTCA+AGG | 0.500800 | 1_1:+66503259 | Msa0037480:CDS |
| CAGATCGAGAGTGGAGTTGA+AGG | 0.501168 | 1_1:+66502894 | Msa0037480:CDS |
| ATAGAATCGTTGTGTGGAGC+GGG | 0.501345 | 1_1:+66503321 | Msa0037480:CDS |
| AATGCGAGAACTCATGTTTG+AGG | 0.508177 | 1_1:+66503427 | Msa0037480:CDS |
| GTAAGATCGGAAGGATGAAC+CGG | 0.510311 | 1_1:-66501718 | None:intergenic |
| AACCAATGGGATTTGGCATG+TGG | 0.510972 | 1_1:-66503502 | None:intergenic |
| TATACTGGTGTCTGCTTCAG+AGG | 0.514396 | 1_1:+66501685 | Msa0037480:CDS |
| CACTTCTAAAATTGCATGAG+TGG | 0.515874 | 1_1:-66503948 | None:intergenic |
| ATTTCAAGTTCACTGAGGTA+TGG | 0.518729 | 1_1:+66501648 | Msa0037480:exon |
| GCAATTCATGCCACTGAGCA+AGG | 0.519046 | 1_1:+66503056 | Msa0037480:CDS |
| TTTCAAAGTGTGCTTTCCAT+GGG | 0.520623 | 1_1:+66503158 | Msa0037480:CDS |
| GATTTCACAGCTGCTTGTGT+AGG | 0.522599 | 1_1:-66502222 | None:intergenic |
| AAGAGCTTAGAATTCAATGT+AGG | 0.522936 | 1_1:-66503458 | None:intergenic |
| AAGAGCCGTGTTCAAACCAA+TGG | 0.526094 | 1_1:-66503516 | None:intergenic |
| TCTAATGGGAGAGGTACAAA+TGG | 0.526400 | 1_1:-66503575 | None:intergenic |
| AATCGACCATCAGGTAGGTA+TGG | 0.528759 | 1_1:-66502837 | None:intergenic |
| AGAATTTGCCAATTTGGTGA+AGG | 0.533742 | 1_1:+66503607 | Msa0037480:CDS |
| CAAAACCTCATTGGATGGTA+TGG | 0.535451 | 1_1:+66503127 | Msa0037480:CDS |
| GTGGAGAAGACGGTGGTTGG+CGG | 0.540986 | 1_1:-66501616 | None:intergenic |
| AGGAATGTGTGGGAAATGAC+AGG | 0.543586 | 1_1:+66503279 | Msa0037480:CDS |
| TCTTGAAGCATACGATGCCT+TGG | 0.545550 | 1_1:+66502863 | Msa0037480:CDS |
| TTCCACATGCCAAATCCCAT+TGG | 0.545798 | 1_1:+66503500 | Msa0037480:CDS |
| ACTTCTAAAATTGCATGAGT+GGG | 0.548290 | 1_1:-66503947 | None:intergenic |
| GGCTGGTGTCAAGGAATGTG+TGG | 0.556357 | 1_1:+66503268 | Msa0037480:CDS |
| ACAAGGTTAATACAATATGC+AGG | 0.560106 | 1_1:-66503889 | None:intergenic |
| AACTTGAAATCGAGCTGCTG+TGG | 0.560585 | 1_1:-66501635 | None:intergenic |
| TCGAGCTGCTGTGGAGAAGA+CGG | 0.566913 | 1_1:-66501626 | None:intergenic |
| CATAACCCCATCTAGCATCA+TGG | 0.567567 | 1_1:-66503358 | None:intergenic |
| TTGTTAGTAGTAAGATCGGA+AGG | 0.567613 | 1_1:-66501727 | None:intergenic |
| TCAATGCCATGATGCTAGAT+GGG | 0.567969 | 1_1:+66503352 | Msa0037480:CDS |
| TGGAAAAGCCAGTCAATCAA+AGG | 0.572095 | 1_1:-66503482 | None:intergenic |
| TATGGCAAAACCTCATTGGA+TGG | 0.575275 | 1_1:+66503122 | Msa0037480:CDS |
| ATATATGATCGTGGGTCCCA+TGG | 0.576230 | 1_1:-66503174 | None:intergenic |
| ATAGTAAGGGTTTATATGAA+GGG | 0.577466 | 1_1:-66503102 | None:intergenic |
| AGAGCCGTGTTCAAACCAAT+GGG | 0.577523 | 1_1:-66503515 | None:intergenic |
| GTAAATATGCAGATCGAGAG+TGG | 0.578320 | 1_1:+66502885 | Msa0037480:CDS |
| TGTTTGGCATATTTCAAACA+AGG | 0.584439 | 1_1:-66503906 | None:intergenic |
| TGAAGGTCAATTAATGAGCT+GGG | 0.584644 | 1_1:+66502941 | Msa0037480:CDS |
| TATTTACAGGACTTGTACAG+AGG | 0.599967 | 1_1:+66502776 | Msa0037480:intron |
| ATGAGTTCTCGCATTAAACC+AGG | 0.602598 | 1_1:-66503419 | None:intergenic |
| GCTGTGGAGAAGACGGTGGT+TGG | 0.609598 | 1_1:-66501619 | None:intergenic |
| AATAGAATCGTTGTGTGGAG+CGG | 0.613867 | 1_1:+66503320 | Msa0037480:CDS |
| AGAGGTAGACATCAAACCAA+TGG | 0.618147 | 1_1:+66503992 | Msa0037480:three_prime_UTR |
| AAATCCCATTGGTTTGAACA+CGG | 0.620889 | 1_1:+66503511 | Msa0037480:CDS |
| TCTCAAAACTCCGCATTGGG+AGG | 0.623035 | 1_1:-66502254 | None:intergenic |
| GGCACATTATATATGATCGT+GGG | 0.623516 | 1_1:-66503182 | None:intergenic |
| AGGCACATTATATATGATCG+TGG | 0.625176 | 1_1:-66503183 | None:intergenic |
| AAGGATACAATAAGTCTACA+AGG | 0.625433 | 1_1:-66503745 | None:intergenic |
| AAAACTCCATACCTACCTGA+TGG | 0.627623 | 1_1:+66502831 | Msa0037480:CDS |
| ATACTGGAAGTAACTCGACA+AGG | 0.635535 | 1_1:+66503030 | Msa0037480:CDS |
| TACTGGAAGTAACTCGACAA+GGG | 0.637824 | 1_1:+66503031 | Msa0037480:CDS |
| CTCGATCTGCATATTTACCA+AGG | 0.639513 | 1_1:-66502880 | None:intergenic |
| GGTTTCTCAGTAAACCGCGA+AGG | 0.644815 | 1_1:+66501567 | Msa0037480:five_prime_UTR |
| ATGTCTTGACCAGTTCGTGA+AGG | 0.650374 | 1_1:-66503203 | None:intergenic |
| TATTCAGGAACTCTTACTGG+AGG | 0.652852 | 1_1:+66502199 | Msa0037480:intron |
| GTTGGTGGCACAACTGGTGA+AGG | 0.663404 | 1_1:+66502924 | Msa0037480:CDS |
| GCTGGTGTCAAGGAATGTGT+GGG | 0.663954 | 1_1:+66503269 | Msa0037480:CDS |
| CTGATAATAGAATCGTTGTG+TGG | 0.669847 | 1_1:+66503315 | Msa0037480:CDS |
| AACCGCAAAACCTTGCTCAG+TGG | 0.673625 | 1_1:-66503066 | None:intergenic |
| GATCAAATCGACCATCAGGT+AGG | 0.678861 | 1_1:-66502842 | None:intergenic |
| AGCAACCATACCATCCAATG+AGG | 0.685283 | 1_1:-66503132 | None:intergenic |
| CCAATTTCCACCTCCCAATG+CGG | 0.691962 | 1_1:+66502244 | Msa0037480:CDS |
| CAATGCCATGATGCTAGATG+GGG | 0.711874 | 1_1:+66503353 | Msa0037480:CDS |
| GCTCGATTTCAAGTTCACTG+AGG | 0.769035 | 1_1:+66501643 | Msa0037480:five_prime_UTR |
| AGCTGCTGTGGAGAAGACGG+TGG | 0.771661 | 1_1:-66501623 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAAATTATGAAATGAATT+GGG | - | chr1_1:66501540-66501559 | None:intergenic | 15.0% |
| !! | ATAGAAATTATGAAATGAAT+TGG | - | chr1_1:66501541-66501560 | None:intergenic | 15.0% |
| !! | AGATTTCAAAATAAAGAAAA+TGG | - | chr1_1:66501773-66501792 | None:intergenic | 15.0% |
| !! | AATAAAAAGATGAAAACAAA+TGG | - | chr1_1:66502411-66502430 | None:intergenic | 15.0% |
| !! | TTTCATAATTTCTATCAGTT+AGG | + | chr1_1:66501546-66501565 | Msa0037480:five_prime_UTR | 20.0% |
| !! | AATGAATTCGATGAAATAAA+CGG | + | chr1_1:66501937-66501956 | Msa0037480:intron | 20.0% |
| !!! | TATGATTTTAATGATGATGA+AGG | + | chr1_1:66501984-66502003 | Msa0037480:intron | 20.0% |
| !!! | ATGATTTTAATGATGATGAA+GGG | + | chr1_1:66501985-66502004 | Msa0037480:intron | 20.0% |
| !!! | GTTTTCATCTTTTTATTTTC+TGG | + | chr1_1:66502414-66502433 | Msa0037480:intron | 20.0% |
| !!! | TTCTAAGGAGTATATTTAAA+AGG | + | chr1_1:66502662-66502681 | Msa0037480:intron | 20.0% |
| !! | AAGCTATATATTGTATTTAC+AGG | + | chr1_1:66502763-66502782 | Msa0037480:intron | 20.0% |
| !!! | ATTCTATTCTTTTCTCTAAT+GGG | - | chr1_1:66503592-66503611 | None:intergenic | 20.0% |
| !!! | AATTCTATTCTTTTCTCTAA+TGG | - | chr1_1:66503593-66503612 | None:intergenic | 20.0% |
| !!! | ATTTAGGTTGTTAGTTATTA+TGG | + | chr1_1:66503712-66503731 | Msa0037480:exon | 20.0% |
| !! | GTTTTTGTTAGTAGTAAGAT+CGG | - | chr1_1:66501734-66501753 | None:intergenic | 25.0% |
| !! | TTGAGAGTATAATTTAGCTA+AGG | + | chr1_1:66502036-66502055 | Msa0037480:intron | 25.0% |
| !!! | TTTTGAGATGAAAAATAGGT+TGG | + | chr1_1:66502269-66502288 | Msa0037480:intron | 25.0% |
| ! | AGTATCAAAACTAATGAATG+TGG | - | chr1_1:66502316-66502335 | None:intergenic | 25.0% |
| !! | TATTGTGATTTGTGATGAAA+CGG | + | chr1_1:66502467-66502486 | Msa0037480:intron | 25.0% |
| ! | GAAAAACAAATCCAAATTAG+TGG | - | chr1_1:66502523-66502542 | None:intergenic | 25.0% |
| ! | AATCTCAAATTGAATGATAG+AGG | - | chr1_1:66502545-66502564 | None:intergenic | 25.0% |
| !!! | AGATTTTGATTTGACATACA+AGG | + | chr1_1:66502560-66502579 | Msa0037480:intron | 25.0% |
| !! | TAAGGAGTATATTTAAAAGG+TGG | + | chr1_1:66502665-66502684 | Msa0037480:intron | 25.0% |
| !!! | TGTTGCTTTTGTTTTAATCA+TGG | + | chr1_1:66502718-66502737 | Msa0037480:intron | 25.0% |
| !! | AATCATGGAATCACAAATTT+TGG | + | chr1_1:66502733-66502752 | Msa0037480:intron | 25.0% |
| ! | ATAGTAAGGGTTTATATGAA+GGG | - | chr1_1:66503105-66503124 | None:intergenic | 25.0% |
| ! | AAGAATAGAATTTGCCAATT+TGG | + | chr1_1:66503601-66503620 | Msa0037480:CDS | 25.0% |
| !! | TGGTTAGTCGATATTAATTT+AGG | + | chr1_1:66503696-66503715 | Msa0037480:exon | 25.0% |
| ! | TTGTTAGTTATTATGGAGTT+AGG | + | chr1_1:66503719-66503738 | Msa0037480:three_prime_UTR | 25.0% |
| ! | TTGAAGTTTCACAAAAAAAC+CGG | - | chr1_1:66503774-66503793 | None:intergenic | 25.0% |
| ! | TCATTGTAATAATGTTCCAT+TGG | - | chr1_1:66504011-66504030 | None:intergenic | 25.0% |
| TTACTACTAACAAAAACACC+AGG | + | chr1_1:66501737-66501756 | Msa0037480:CDS | 30.0% | |
| GAAAATGGAAAATTTGAACC+TGG | - | chr1_1:66501758-66501777 | None:intergenic | 30.0% | |
| !! | TTGATTTGTCTATATGCATG+TGG | + | chr1_1:66501858-66501877 | Msa0037480:intron | 30.0% |
| !! | ATTGCAGCTGAATTTGATTT+TGG | + | chr1_1:66501881-66501900 | Msa0037480:intron | 30.0% |
| ! | CAAAATCTAAGATACAGGAA+TGG | - | chr1_1:66502075-66502094 | None:intergenic | 30.0% |
| ! | GCTAACAAAATCTAAGATAC+AGG | - | chr1_1:66502080-66502099 | None:intergenic | 30.0% |
| ! | AGATTTTGTTAGCATGTATG+AGG | + | chr1_1:66502087-66502106 | Msa0037480:intron | 30.0% |
| AGCACAATCAATATCAATCA+CGG | - | chr1_1:66502114-66502133 | None:intergenic | 30.0% | |
| GTTTGTCTGTATGATTATTC+AGG | + | chr1_1:66502184-66502203 | Msa0037480:intron | 30.0% | |
| !!! | GGAGTTTTGAGATGAAAAAT+AGG | + | chr1_1:66502265-66502284 | Msa0037480:CDS | 30.0% |
| ! | ATTGTGATTTGTGATGAAAC+GGG | + | chr1_1:66502468-66502487 | Msa0037480:intron | 30.0% |
| CTTGCTTATTTCCACTAATT+TGG | + | chr1_1:66502509-66502528 | Msa0037480:intron | 30.0% | |
| ACAAAAGCAACAACACAAAT+AGG | - | chr1_1:66502710-66502729 | None:intergenic | 30.0% | |
| !!! | ACACAGTTAATTGTTTTGGT+GGG | + | chr1_1:66502988-66503007 | Msa0037480:CDS | 30.0% |
| ATCAAGGTTATTGGAAATAC+TGG | + | chr1_1:66503014-66503033 | Msa0037480:CDS | 30.0% | |
| CATAGTAAGGGTTTATATGA+AGG | - | chr1_1:66503106-66503125 | None:intergenic | 30.0% | |
| CTTCATATAAACCCTTACTA+TGG | + | chr1_1:66503104-66503123 | Msa0037480:CDS | 30.0% | |
| !!! | GCTAAGTTTTGAATTACATG+CGG | - | chr1_1:66503233-66503252 | None:intergenic | 30.0% |
| AAGAGCTTAGAATTCAATGT+AGG | - | chr1_1:66503461-66503480 | None:intergenic | 30.0% | |
| AAGGATACAATAAGTCTACA+AGG | - | chr1_1:66503748-66503767 | None:intergenic | 30.0% | |
| ! | TAAGATCTTGTTTCTTGTAC+TGG | + | chr1_1:66503842-66503861 | Msa0037480:three_prime_UTR | 30.0% |
| ACAAGGTTAATACAATATGC+AGG | - | chr1_1:66503892-66503911 | None:intergenic | 30.0% | |
| TGTTTGGCATATTTCAAACA+AGG | - | chr1_1:66503909-66503928 | None:intergenic | 30.0% | |
| !! | ACTTCTAAAATTGCATGAGT+GGG | - | chr1_1:66503950-66503969 | None:intergenic | 30.0% |
| CTAACTGAAAAAAACCTTCG+CGG | - | chr1_1:66501584-66501603 | None:intergenic | 35.0% | |
| !! | ATTTCAAGTTCACTGAGGTA+TGG | + | chr1_1:66501648-66501667 | Msa0037480:exon | 35.0% |
| TTGTTAGTAGTAAGATCGGA+AGG | - | chr1_1:66501730-66501749 | None:intergenic | 35.0% | |
| GCACAATCAATATCAATCAC+GGG | - | chr1_1:66502113-66502132 | None:intergenic | 35.0% | |
| GATTATTCAGGAACTCTTAC+TGG | + | chr1_1:66502196-66502215 | Msa0037480:intron | 35.0% | |
| CAAGCATTATTCCACTAAGT+GGG | + | chr1_1:66502350-66502369 | Msa0037480:intron | 35.0% | |
| AAGCATTATTCCACTAAGTG+GGG | + | chr1_1:66502351-66502370 | Msa0037480:intron | 35.0% | |
| ! | TTCTGGAAGAGACACAAATA+TGG | + | chr1_1:66502431-66502450 | Msa0037480:intron | 35.0% |
| TATTTACAGGACTTGTACAG+AGG | + | chr1_1:66502776-66502795 | Msa0037480:intron | 35.0% | |
| !! | AGGTAGGTATGGAGTTTTAA+TGG | - | chr1_1:66502829-66502848 | None:intergenic | 35.0% |
| TGAAGGTCAATTAATGAGCT+GGG | + | chr1_1:66502941-66502960 | Msa0037480:CDS | 35.0% | |
| !!! | CACACAGTTAATTGTTTTGG+TGG | + | chr1_1:66502987-66503006 | Msa0037480:CDS | 35.0% |
| !!! | TTGTTTTGGTGGGAAAATCA+AGG | + | chr1_1:66502998-66503017 | Msa0037480:CDS | 35.0% |
| ! | ATGAGGTTTTGCCATAGTAA+GGG | - | chr1_1:66503118-66503137 | None:intergenic | 35.0% |
| ! | AATGAGGTTTTGCCATAGTA+AGG | - | chr1_1:66503119-66503138 | None:intergenic | 35.0% |
| TTACTATGGCAAAACCTCAT+TGG | + | chr1_1:66503118-66503137 | Msa0037480:CDS | 35.0% | |
| TTTCAAAGTGTGCTTTCCAT+GGG | + | chr1_1:66503158-66503177 | Msa0037480:CDS | 35.0% | |
| GGCACATTATATATGATCGT+GGG | - | chr1_1:66503185-66503204 | None:intergenic | 35.0% | |
| AGGCACATTATATATGATCG+TGG | - | chr1_1:66503186-66503205 | None:intergenic | 35.0% | |
| !!! | AAGTTTTGAATTACATGCGG+TGG | - | chr1_1:66503230-66503249 | None:intergenic | 35.0% |
| CTTAGCTCAAAATACTTGCT+TGG | + | chr1_1:66503247-66503266 | Msa0037480:CDS | 35.0% | |
| CTGATAATAGAATCGTTGTG+TGG | + | chr1_1:66503315-66503334 | Msa0037480:CDS | 35.0% | |
| !! | AAATCCCATTGGTTTGAACA+CGG | + | chr1_1:66503511-66503530 | Msa0037480:CDS | 35.0% |
| ! | ATTCTTTTCTCTAATGGGAG+AGG | - | chr1_1:66503587-66503606 | None:intergenic | 35.0% |
| ! | AGAATTTGCCAATTTGGTGA+AGG | + | chr1_1:66503607-66503626 | Msa0037480:CDS | 35.0% |
| ACCTATTTCCTTCACCAAAT+TGG | - | chr1_1:66503618-66503637 | None:intergenic | 35.0% | |
| ! | ATAGGTCGTCAACATTTTGT+TGG | + | chr1_1:66503632-66503651 | Msa0037480:CDS | 35.0% |
| !! | TGATGACAACGACTTTTTCT+TGG | + | chr1_1:66503676-66503695 | Msa0037480:CDS | 35.0% |
| GACTTATTGTATCCTTTCTC+CGG | + | chr1_1:66503752-66503771 | Msa0037480:three_prime_UTR | 35.0% | |
| TTCACAAAAAAACCGGAGAA+AGG | - | chr1_1:66503767-66503786 | None:intergenic | 35.0% | |
| ! | AATTATGTGTGTTGTTGTGC+TGG | + | chr1_1:66503800-66503819 | Msa0037480:three_prime_UTR | 35.0% |
| !! | CTTGTACTGGTTACTTTGTT+TGG | + | chr1_1:66503855-66503874 | Msa0037480:three_prime_UTR | 35.0% |
| !! | CGTTTTTGAAAATGGGTGTT+TGG | - | chr1_1:66503925-66503944 | None:intergenic | 35.0% |
| !! | GTGGGATCGTTTTTGAAAAT+GGG | - | chr1_1:66503932-66503951 | None:intergenic | 35.0% |
| !! | AGTGGGATCGTTTTTGAAAA+TGG | - | chr1_1:66503933-66503952 | None:intergenic | 35.0% |
| !! | CACTTCTAAAATTGCATGAG+TGG | - | chr1_1:66503951-66503970 | None:intergenic | 35.0% |
| ! | TTTTTGCTTAAGATGCTGAG+AGG | + | chr1_1:66503974-66503993 | Msa0037480:three_prime_UTR | 35.0% |
| !!! | CGCGAAGGTTTTTTTCAGTT+AGG | + | chr1_1:66501582-66501601 | Msa0037480:five_prime_UTR | 40.0% |
| GCTACATTGAAGAGCTATAC+TGG | + | chr1_1:66501670-66501689 | Msa0037480:CDS | 40.0% | |
| TATTCAGGAACTCTTACTGG+AGG | + | chr1_1:66502199-66502218 | Msa0037480:intron | 40.0% | |
| TCATCTCAAAACTCCGCATT+GGG | - | chr1_1:66502260-66502279 | None:intergenic | 40.0% | |
| TTCATCTCAAAACTCCGCAT+TGG | - | chr1_1:66502261-66502280 | None:intergenic | 40.0% | |
| CCACTTAGTGGAATAATGCT+TGG | - | chr1_1:66502352-66502371 | None:intergenic | 40.0% | |
| CCAAGCATTATTCCACTAAG+TGG | + | chr1_1:66502349-66502368 | Msa0037480:intron | 40.0% | |
| ATTATTCCACTAAGTGGGGT+TGG | + | chr1_1:66502355-66502374 | Msa0037480:intron | 40.0% | |
| ATACTCCTTAGAACATGCAG+CGG | - | chr1_1:66502655-66502674 | None:intergenic | 40.0% | |
| AAAACTCCATACCTACCTGA+TGG | + | chr1_1:66502831-66502850 | Msa0037480:CDS | 40.0% | |
| TCAAGATCAAATCGACCATC+AGG | - | chr1_1:66502849-66502868 | None:intergenic | 40.0% | |
| CTCGATCTGCATATTTACCA+AGG | - | chr1_1:66502883-66502902 | None:intergenic | 40.0% | |
| GTAAATATGCAGATCGAGAG+TGG | + | chr1_1:66502885-66502904 | Msa0037480:CDS | 40.0% | |
| !! | GGAGTTGAAGGTGTTATTGT+TGG | + | chr1_1:66502906-66502925 | Msa0037480:CDS | 40.0% |
| !! | GTTGAAGGTGTTATTGTTGG+TGG | + | chr1_1:66502909-66502928 | Msa0037480:CDS | 40.0% |
| GTGAAGGTCAATTAATGAGC+TGG | + | chr1_1:66502940-66502959 | Msa0037480:CDS | 40.0% | |
| ! | GCGCACACAGTTAATTGTTT+TGG | + | chr1_1:66502984-66503003 | Msa0037480:CDS | 40.0% |
| GGTGGGAAAATCAAGGTTAT+TGG | + | chr1_1:66503005-66503024 | Msa0037480:CDS | 40.0% | |
| ATACTGGAAGTAACTCGACA+AGG | + | chr1_1:66503030-66503049 | Msa0037480:CDS | 40.0% | |
| TACTGGAAGTAACTCGACAA+GGG | + | chr1_1:66503031-66503050 | Msa0037480:CDS | 40.0% | |
| TATGGCAAAACCTCATTGGA+TGG | + | chr1_1:66503122-66503141 | Msa0037480:CDS | 40.0% | |
| CAAAACCTCATTGGATGGTA+TGG | + | chr1_1:66503127-66503146 | Msa0037480:CDS | 40.0% | |
| CTTTCAAAGTGTGCTTTCCA+TGG | + | chr1_1:66503157-66503176 | Msa0037480:CDS | 40.0% | |
| TATAATGTGCCTTCACGAAC+TGG | + | chr1_1:66503194-66503213 | Msa0037480:CDS | 40.0% | |
| AATAGAATCGTTGTGTGGAG+CGG | + | chr1_1:66503320-66503339 | Msa0037480:CDS | 40.0% | |
| ATCAATGCCATGATGCTAGA+TGG | + | chr1_1:66503351-66503370 | Msa0037480:CDS | 40.0% | |
| TCAATGCCATGATGCTAGAT+GGG | + | chr1_1:66503352-66503371 | Msa0037480:CDS | 40.0% | |
| ATGAGTTCTCGCATTAAACC+AGG | - | chr1_1:66503422-66503441 | None:intergenic | 40.0% | |
| AATGCGAGAACTCATGTTTG+AGG | + | chr1_1:66503427-66503446 | Msa0037480:CDS | 40.0% | |
| ATGCGAGAACTCATGTTTGA+GGG | + | chr1_1:66503428-66503447 | Msa0037480:CDS | 40.0% | |
| TGGAAAAGCCAGTCAATCAA+AGG | - | chr1_1:66503485-66503504 | None:intergenic | 40.0% | |
| GTGTTCAAACCAATGGGATT+TGG | - | chr1_1:66503512-66503531 | None:intergenic | 40.0% | |
| ACAAATGGCAACCTGAAAAC+TGG | - | chr1_1:66503563-66503582 | None:intergenic | 40.0% | |
| ! | TCTAATGGGAGAGGTACAAA+TGG | - | chr1_1:66503578-66503597 | None:intergenic | 40.0% |
| ! | GCCAATTTGGTGAAGGAAAT+AGG | + | chr1_1:66503614-66503633 | Msa0037480:CDS | 40.0% |
| AGAGGTAGACATCAAACCAA+TGG | + | chr1_1:66503992-66504011 | Msa0037480:three_prime_UTR | 40.0% | |
| AACTTGAAATCGAGCTGCTG+TGG | - | chr1_1:66501638-66501657 | None:intergenic | 45.0% | |
| !! | GCTCGATTTCAAGTTCACTG+AGG | + | chr1_1:66501643-66501662 | Msa0037480:five_prime_UTR | 45.0% |
| TATACTGGTGTCTGCTTCAG+AGG | + | chr1_1:66501685-66501704 | Msa0037480:CDS | 45.0% | |
| GTAAGATCGGAAGGATGAAC+CGG | - | chr1_1:66501721-66501740 | None:intergenic | 45.0% | |
| GATTTCACAGCTGCTTGTGT+AGG | - | chr1_1:66502225-66502244 | None:intergenic | 45.0% | |
| AATCGACCATCAGGTAGGTA+TGG | - | chr1_1:66502840-66502859 | None:intergenic | 45.0% | |
| GATCAAATCGACCATCAGGT+AGG | - | chr1_1:66502845-66502864 | None:intergenic | 45.0% | |
| TCTTGAAGCATACGATGCCT+TGG | + | chr1_1:66502863-66502882 | Msa0037480:CDS | 45.0% | |
| !! | GTTATTGTTGGTGGCACAAC+TGG | + | chr1_1:66502918-66502937 | Msa0037480:CDS | 45.0% |
| AGCAACCATACCATCCAATG+AGG | - | chr1_1:66503135-66503154 | None:intergenic | 45.0% | |
| ATATATGATCGTGGGTCCCA+TGG | - | chr1_1:66503177-66503196 | None:intergenic | 45.0% | |
| ATGTCTTGACCAGTTCGTGA+AGG | - | chr1_1:66503206-66503225 | None:intergenic | 45.0% | |
| GCTCAAAATACTTGCTTGGC+TGG | + | chr1_1:66503251-66503270 | Msa0037480:CDS | 45.0% | |
| AGGAATGTGTGGGAAATGAC+AGG | + | chr1_1:66503279-66503298 | Msa0037480:CDS | 45.0% | |
| ATAGAATCGTTGTGTGGAGC+GGG | + | chr1_1:66503321-66503340 | Msa0037480:CDS | 45.0% | |
| CAATGCCATGATGCTAGATG+GGG | + | chr1_1:66503353-66503372 | Msa0037480:CDS | 45.0% | |
| CATAACCCCATCTAGCATCA+TGG | - | chr1_1:66503361-66503380 | None:intergenic | 45.0% | |
| CATGATGCTAGATGGGGTTA+TGG | + | chr1_1:66503359-66503378 | Msa0037480:CDS | 45.0% | |
| GTTGCAAGCAATCTGATTCC+TGG | + | chr1_1:66503401-66503420 | Msa0037480:CDS | 45.0% | |
| AGCTCTTGCCTTTGATTGAC+TGG | + | chr1_1:66503474-66503493 | Msa0037480:CDS | 45.0% | |
| TTCCACATGCCAAATCCCAT+TGG | + | chr1_1:66503500-66503519 | Msa0037480:CDS | 45.0% | |
| AACCAATGGGATTTGGCATG+TGG | - | chr1_1:66503505-66503524 | None:intergenic | 45.0% | |
| AGAGCCGTGTTCAAACCAAT+GGG | - | chr1_1:66503518-66503537 | None:intergenic | 45.0% | |
| AAGAGCCGTGTTCAAACCAA+TGG | - | chr1_1:66503519-66503538 | None:intergenic | 45.0% | |
| TTGCTCAACTTGGAGTTGTC+AGG | + | chr1_1:66503537-66503556 | Msa0037480:CDS | 45.0% | |
| TGTTGGAACTGAAGACGTTC+AGG | + | chr1_1:66503649-66503668 | Msa0037480:CDS | 45.0% | |
| !! | AAACATTAAATAAAAAAAAT+TGG | - | chr1_1:66502168-66502187 | None:intergenic | 5.0% |
| GGTTTCTCAGTAAACCGCGA+AGG | + | chr1_1:66501567-66501586 | Msa0037480:five_prime_UTR | 50.0% | |
| ! | CTTCAGAGGATCCGGTTTTC+CGG | + | chr1_1:66501699-66501718 | Msa0037480:CDS | 50.0% |
| GGAAGGATGAACCGGAAAAC+CGG | - | chr1_1:66501713-66501732 | None:intergenic | 50.0% | |
| CCAATTTCCACCTCCCAATG+CGG | + | chr1_1:66502244-66502263 | Msa0037480:CDS | 50.0% | |
| TCTCAAAACTCCGCATTGGG+AGG | - | chr1_1:66502257-66502276 | None:intergenic | 50.0% | |
| CTAATGCCAACCCCACTTAG+TGG | - | chr1_1:66502364-66502383 | None:intergenic | 50.0% | |
| CTGTACCGCTGCATGTTCTA+AGG | + | chr1_1:66502647-66502666 | Msa0037480:intron | 50.0% | |
| CAGATCGAGAGTGGAGTTGA+AGG | + | chr1_1:66502894-66502913 | Msa0037480:CDS | 50.0% | |
| GCAATTCATGCCACTGAGCA+AGG | + | chr1_1:66503056-66503075 | Msa0037480:CDS | 50.0% | |
| ! | TGCCACTGAGCAAGGTTTTG+CGG | + | chr1_1:66503064-66503083 | Msa0037480:CDS | 50.0% |
| AACCGCAAAACCTTGCTCAG+TGG | - | chr1_1:66503069-66503088 | None:intergenic | 50.0% | |
| ! | ACTGAGCAAGGTTTTGCGGT+TGG | + | chr1_1:66503068-66503087 | Msa0037480:CDS | 50.0% |
| ! | GGTTTTGCGGTTGGAATGCA+TGG | + | chr1_1:66503077-66503096 | Msa0037480:CDS | 50.0% |
| ! | TACTTGCTTGGCTGGTGTCA+AGG | + | chr1_1:66503259-66503278 | Msa0037480:CDS | 50.0% |
| ! | GCTGGTGTCAAGGAATGTGT+GGG | + | chr1_1:66503269-66503288 | Msa0037480:CDS | 50.0% |
| AGATGGGGTTATGGAGCTAC+TGG | + | chr1_1:66503368-66503387 | Msa0037480:CDS | 50.0% | |
| AACACGGCTCTTGCTCAACT+TGG | + | chr1_1:66503527-66503546 | Msa0037480:CDS | 50.0% | |
| ! | GAGTTGTCAGGCCAGTTTTC+AGG | + | chr1_1:66503549-66503568 | Msa0037480:CDS | 50.0% |
| TCGAGCTGCTGTGGAGAAGA+CGG | - | chr1_1:66501629-66501648 | None:intergenic | 55.0% | |
| GGTGTCTGCTTCAGAGGATC+CGG | + | chr1_1:66501691-66501710 | Msa0037480:CDS | 55.0% | |
| CCGCATTGGGAGGTGGAAAT+TGG | - | chr1_1:66502247-66502266 | None:intergenic | 55.0% | |
| CAAAACTCCGCATTGGGAGG+TGG | - | chr1_1:66502254-66502273 | None:intergenic | 55.0% | |
| AAGGTGGTCTCGCTTGCTTC+TGG | + | chr1_1:66502681-66502700 | Msa0037480:intron | 55.0% | |
| !! | GTTGGTGGCACAACTGGTGA+AGG | + | chr1_1:66502924-66502943 | Msa0037480:CDS | 55.0% |
| ! | GGCTGGTGTCAAGGAATGTG+TGG | + | chr1_1:66503268-66503287 | Msa0037480:CDS | 55.0% |
| GTGGAGAAGACGGTGGTTGG+CGG | - | chr1_1:66501619-66501638 | None:intergenic | 60.0% | |
| GCTGTGGAGAAGACGGTGGT+TGG | - | chr1_1:66501622-66501641 | None:intergenic | 60.0% | |
| AGCTGCTGTGGAGAAGACGG+TGG | - | chr1_1:66501626-66501645 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 66501536 | 66504051 | 66501536 | ID=Msa0037480;Name=Msa0037480 |
| chr1_1 | mRNA | 66501536 | 66504051 | 66501536 | ID=Msa0037480-mRNA-1;Parent=Msa0037480;Name=Msa0037480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=131|1|1|1|1|1|3|339|366 |
| chr1_1 | exon | 66501536 | 66501758 | 66501536 | ID=Msa0037480-mRNA-1:exon:21499;Parent=Msa0037480-mRNA-1 |
| chr1_1 | exon | 66502206 | 66502286 | 66502206 | ID=Msa0037480-mRNA-1:exon:21500;Parent=Msa0037480-mRNA-1 |
| chr1_1 | exon | 66502785 | 66504051 | 66502785 | ID=Msa0037480-mRNA-1:exon:21501;Parent=Msa0037480-mRNA-1 |
| chr1_1 | five_prime_UTR | 66501536 | 66501666 | 66501536 | ID=Msa0037480-mRNA-1:five_prime_utr;Parent=Msa0037480-mRNA-1 |
| chr1_1 | CDS | 66501667 | 66501758 | 66501667 | ID=Msa0037480-mRNA-1:cds;Parent=Msa0037480-mRNA-1 |
| chr1_1 | CDS | 66502206 | 66502286 | 66502206 | ID=Msa0037480-mRNA-1:cds;Parent=Msa0037480-mRNA-1 |
| chr1_1 | CDS | 66502785 | 66503712 | 66502785 | ID=Msa0037480-mRNA-1:cds;Parent=Msa0037480-mRNA-1 |
| chr1_1 | three_prime_UTR | 66503713 | 66504051 | 66503713 | ID=Msa0037480-mRNA-1:three_prime_utr;Parent=Msa0037480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
