Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087910 | sp|Q8GTE3|RS3A_CICAR | 91.571 | 261 | 22 | 0 | 1 | 261 | 1 | 261 | 8.87e-172 | 477 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087910 | B7FLW8 | 98.467 | 261 | 4 | 0 | 1 | 261 | 1 | 261 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0087910 | 0.837880 | 4.002790e-57 | -8.615850e-47 |
| Msa0003330 | Msa0087910 | 0.814328 | 1.629062e-51 | -8.615850e-47 |
| Msa0016350 | Msa0087910 | 0.820923 | 5.306344e-53 | -8.615850e-47 |
| Msa0021290 | Msa0087910 | 0.811937 | 5.453770e-51 | -8.615850e-47 |
| Msa0021320 | Msa0087910 | 0.817391 | 3.378343e-52 | -8.615850e-47 |
| Msa0027590 | Msa0087910 | 0.849831 | 2.511567e-60 | -8.615850e-47 |
| Msa0032780 | Msa0087910 | 0.828265 | 9.894172e-55 | -8.615850e-47 |
| Msa0037480 | Msa0087910 | 0.810343 | 1.208129e-50 | -8.615850e-47 |
| Msa0040220 | Msa0087910 | 0.951942 | 7.018527e-110 | -8.615850e-47 |
| Msa0072570 | Msa0087910 | 0.827545 | 1.474590e-54 | -8.615850e-47 |
| Msa0075350 | Msa0087910 | 0.830298 | 3.177021e-55 | -8.615850e-47 |
| Msa0086160 | Msa0087910 | 0.809206 | 2.121733e-50 | -8.615850e-47 |
| Msa0087910 | Msa0114570 | 0.808094 | 3.666636e-50 | -8.615850e-47 |
| Msa0087910 | Msa0114600 | 0.885665 | 6.683214e-72 | -8.615850e-47 |
| Msa0087910 | Msa0128330 | 0.887673 | 1.160725e-72 | -8.615850e-47 |
| Msa0087910 | Msa0128750 | 0.809770 | 1.605299e-50 | -8.615850e-47 |
| Msa0087910 | Msa0129130 | 0.805806 | 1.117618e-49 | -8.615850e-47 |
| Msa0087910 | Msa0132460 | 0.873543 | 1.355481e-67 | -8.615850e-47 |
| Msa0087910 | Msa0134580 | 0.947419 | 6.980091e-106 | -8.615850e-47 |
| Msa0087910 | Msa0144810 | 0.811806 | 5.822018e-51 | -8.615850e-47 |
| Msa0087910 | Msa0167860 | 0.863229 | 2.888898e-64 | -8.615850e-47 |
| Msa0087910 | Msa0173250 | 0.803925 | 2.761919e-49 | -8.615850e-47 |
| Msa0087910 | Msa0174580 | 0.884500 | 1.818282e-71 | -8.615850e-47 |
| Msa0087910 | Msa0182050 | 0.874545 | 6.209258e-68 | -8.615850e-47 |
| Msa0087910 | Msa0182100 | 0.826599 | 2.482992e-54 | -8.615850e-47 |
| Msa0087910 | Msa0184650 | 0.845006 | 5.313931e-59 | -8.615850e-47 |
| Msa0087910 | Msa0187810 | 0.829768 | 4.278966e-55 | -8.615850e-47 |
| Msa0087910 | Msa0191450 | 0.851559 | 8.201333e-61 | -8.615850e-47 |
| Msa0087910 | Msa0191550 | 0.865817 | 4.482791e-65 | -8.615850e-47 |
| Msa0087910 | Msa0192050 | 0.813833 | 2.094874e-51 | -8.615850e-47 |
| Msa0087910 | Msa0192300 | 0.840645 | 7.676923e-58 | -8.615850e-47 |
| Msa0087910 | Msa0192750 | 0.811879 | 5.614551e-51 | -8.615850e-47 |
| Msa0087910 | Msa0194940 | 0.908500 | 1.596736e-81 | -8.615850e-47 |
| Msa0087910 | Msa0210330 | 0.876575 | 1.251779e-68 | -8.615850e-47 |
| Msa0087910 | Msa0210360 | 0.856290 | 3.556265e-62 | -8.615850e-47 |
| Msa0087910 | Msa0222730 | 0.880386 | 5.731125e-70 | -8.615850e-47 |
| Msa0087910 | Msa0223440 | 0.826491 | 2.635133e-54 | -8.615850e-47 |
| Msa0087910 | Msa0228540 | 0.828992 | 6.603176e-55 | -8.615850e-47 |
| Msa0087910 | Msa0235050 | 0.850627 | 1.502480e-60 | -8.615850e-47 |
| Msa0087910 | Msa0264010 | 0.802083 | 6.639241e-49 | -8.615850e-47 |
| Msa0087910 | Msa0264640 | 0.840580 | 7.980049e-58 | -8.615850e-47 |
| Msa0087910 | Msa0270160 | 0.822697 | 2.061626e-53 | -8.615850e-47 |
| Msa0087910 | Msa0277600 | 0.887760 | 1.075210e-72 | -8.615850e-47 |
| Msa0087910 | Msa0281330 | 0.814121 | 1.810645e-51 | -8.615850e-47 |
| Msa0087910 | Msa0281370 | 0.830059 | 3.634443e-55 | -8.615850e-47 |
| Msa0087910 | Msa0297830 | 0.811870 | 5.639425e-51 | -8.615850e-47 |
| Msa0087910 | Msa0301220 | 0.853626 | 2.110312e-61 | -8.615850e-47 |
| Msa0087910 | Msa0301250 | 0.833633 | 4.766818e-56 | -8.615850e-47 |
| Msa0087910 | Msa0312210 | 0.816495 | 5.370956e-52 | -8.615850e-47 |
| Msa0087910 | Msa0313060 | 0.869022 | 4.227843e-66 | -8.615850e-47 |
| Msa0087910 | Msa0313520 | 0.821564 | 3.776034e-53 | -8.615850e-47 |
| Msa0087910 | Msa0315430 | 0.908873 | 1.061185e-81 | -8.615850e-47 |
| Msa0087910 | Msa0335840 | 0.829792 | 4.221942e-55 | -8.615850e-47 |
| Msa0087910 | Msa0340560 | 0.821198 | 4.585778e-53 | -8.615850e-47 |
| Msa0087910 | Msa0342850 | 0.847596 | 1.046600e-59 | -8.615850e-47 |
| Msa0087910 | Msa0369410 | 0.897939 | 8.642563e-77 | -8.615850e-47 |
| Msa0087910 | Msa0371490 | 0.811424 | 7.049997e-51 | -8.615850e-47 |
| Msa0087910 | Msa0377520 | 0.816505 | 5.343126e-52 | -8.615850e-47 |
| Msa0087910 | Msa0382950 | 0.827333 | 1.657355e-54 | -8.615850e-47 |
| Msa0087910 | Msa0382960 | 0.821075 | 4.895181e-53 | -8.615850e-47 |
| Msa0087910 | Msa0419710 | 0.840475 | 8.505308e-58 | -8.615850e-47 |
| Msa0087910 | Msa0426090 | 0.887877 | 9.697371e-73 | -8.615850e-47 |
| Msa0087910 | Msa0426250 | 0.921351 | 4.001169e-88 | -8.615850e-47 |
| Msa0087910 | Msa0432750 | 0.835468 | 1.648639e-56 | -8.615850e-47 |
| Msa0087910 | Msa0438960 | 0.815310 | 9.869078e-52 | -8.615850e-47 |
| Msa0087910 | Msa0450150 | 0.842981 | 1.854990e-58 | -8.615850e-47 |
| Msa0087910 | Msa0463520 | 0.845519 | 3.861546e-59 | -8.615850e-47 |
| Msa0087910 | Msa0472480 | 0.874489 | 6.490601e-68 | -8.615850e-47 |
| Msa0087910 | Msa0475810 | 0.928700 | 1.993133e-92 | -8.615850e-47 |
| Msa0087910 | Msa0479980 | 0.831291 | 1.814518e-55 | -8.615850e-47 |
| Msa0087910 | Msa0481520 | 0.897369 | 1.502725e-76 | -8.615850e-47 |
| Msa0087910 | Msa0481850 | 0.811190 | 7.925517e-51 | -8.615850e-47 |
| Msa0087910 | Msa0482560 | 0.831362 | 1.742222e-55 | -8.615850e-47 |
| Msa0087910 | Msa0517480 | 0.829101 | 6.215919e-55 | -8.615850e-47 |
| Msa0087910 | Msa0529900 | 0.911890 | 3.642336e-83 | -8.615850e-47 |
| Msa0087910 | Msa0540480 | 0.802919 | 4.464152e-49 | -8.615850e-47 |
| Msa0087910 | Msa0547920 | 0.898944 | 3.228674e-77 | -8.615850e-47 |
| Msa0087910 | Msa0550420 | 0.808459 | 3.064876e-50 | -8.615850e-47 |
| Msa0087910 | Msa0557720 | 0.812008 | 5.260841e-51 | -8.615850e-47 |
| Msa0087910 | Msa0573550 | 0.904864 | 7.852821e-80 | -8.615850e-47 |
| Msa0087910 | Msa0579830 | 0.844986 | 5.380918e-59 | -8.615850e-47 |
| Msa0087910 | Msa0582070 | 0.822496 | 2.296526e-53 | -8.615850e-47 |
| Msa0087910 | Msa0585570 | 0.812283 | 4.583220e-51 | -8.615850e-47 |
| Msa0087910 | Msa0597240 | 0.867403 | 1.404166e-65 | -8.615850e-47 |
| Msa0087910 | Msa0602900 | 0.885457 | 7.995903e-72 | -8.615850e-47 |
| Msa0087910 | Msa0605890 | 0.864879 | 8.847865e-65 | -8.615850e-47 |
| Msa0087910 | Msa0619230 | 0.860452 | 2.045214e-63 | -8.615850e-47 |
| Msa0087910 | Msa0622230 | 0.856490 | 3.106175e-62 | -8.615850e-47 |
| Msa0087910 | Msa0629280 | 0.826440 | 2.710480e-54 | -8.615850e-47 |
| Msa0087910 | Msa0643960 | 0.889013 | 3.541221e-73 | -8.615850e-47 |
| Msa0087910 | Msa0649890 | 0.830407 | 2.989154e-55 | -8.615850e-47 |
| Msa0087910 | Msa0653060 | 0.911534 | 5.451551e-83 | -8.615850e-47 |
| Msa0087910 | Msa0663400 | 0.821087 | 4.865839e-53 | -8.615850e-47 |
| Msa0087910 | Msa0686550 | 0.809639 | 1.712823e-50 | -8.615850e-47 |
| Msa0087910 | Msa0694400 | 0.895214 | 1.184836e-75 | -8.615850e-47 |
| Msa0087910 | Msa0704860 | 0.855996 | 4.334638e-62 | -8.615850e-47 |
| Msa0087910 | Msa0705800 | 0.810867 | 9.308575e-51 | -8.615850e-47 |
| Msa0087910 | Msa0708630 | 0.873767 | 1.139007e-67 | -8.615850e-47 |
| Msa0087910 | Msa0741510 | 0.825036 | 5.833671e-54 | -8.615850e-47 |
| Msa0087910 | Msa0748350 | 0.861969 | 7.061636e-64 | -8.615850e-47 |
| Msa0087910 | Msa0749000 | 0.834617 | 2.702497e-56 | -8.615850e-47 |
| Msa0087910 | Msa0788380 | 0.847694 | 9.834504e-60 | -8.615850e-47 |
| Msa0087910 | Msa0790450 | 0.843360 | 1.469937e-58 | -8.615850e-47 |
| Msa0087910 | Msa0796490 | 0.846413 | 2.206328e-59 | -8.615850e-47 |
| Msa0087910 | Msa0799830 | 0.806973 | 6.341060e-50 | -8.615850e-47 |
| Msa0087910 | Msa0838070 | 0.816550 | 5.219642e-52 | -8.615850e-47 |
| Msa0087910 | Msa0848240 | 0.845045 | 5.186480e-59 | -8.615850e-47 |
| Msa0087910 | Msa0861320 | 0.838725 | 2.424180e-57 | -8.615850e-47 |
| Msa0087910 | Msa0902220 | 0.813762 | 2.172561e-51 | -8.615850e-47 |
| Msa0087910 | Msa0902730 | 0.801821 | 7.515313e-49 | -8.615850e-47 |
| Msa0087910 | Msa0915540 | 0.803784 | 2.954706e-49 | -8.615850e-47 |
| Msa0087910 | Msa0927910 | 0.814802 | 1.279781e-51 | -8.615850e-47 |
| Msa0087910 | Msa0929680 | 0.801281 | 9.694689e-49 | -8.615850e-47 |
| Msa0087910 | Msa0929700 | 0.898460 | 5.192237e-77 | -8.615850e-47 |
| Msa0087910 | Msa0930100 | 0.837467 | 5.109429e-57 | -8.615850e-47 |
| Msa0087910 | Msa0978470 | 0.822820 | 1.930951e-53 | -8.615850e-47 |
| Msa0087910 | Msa1004780 | 0.807027 | 6.175953e-50 | -8.615850e-47 |
| Msa0087910 | Msa1025200 | 0.846020 | 2.822312e-59 | -8.615850e-47 |
| Msa0087910 | Msa1025220 | 0.820129 | 8.072031e-53 | -8.615850e-47 |
| Msa0087910 | Msa1037290 | 0.848170 | 7.269396e-60 | -8.615850e-47 |
| Msa0087910 | Msa1040160 | 0.889654 | 1.996002e-73 | -8.615850e-47 |
| Msa0087910 | Msa1041680 | 0.807347 | 5.283825e-50 | -8.615850e-47 |
| Msa0087910 | Msa1047020 | 0.806898 | 6.578752e-50 | -8.615850e-47 |
| Msa0087910 | Msa1050100 | 0.877147 | 7.936232e-69 | -8.615850e-47 |
| Msa0087910 | Msa1054280 | 0.864418 | 1.233377e-64 | -8.615850e-47 |
| Msa0087910 | Msa1078870 | 0.840370 | 9.057851e-58 | -8.615850e-47 |
| Msa0087910 | Msa1078980 | 0.848528 | 5.788784e-60 | -8.615850e-47 |
| Msa0087910 | Msa1079910 | 0.845053 | 5.162163e-59 | -8.615850e-47 |
| Msa0087910 | Msa1079920 | 0.862702 | 4.204207e-64 | -8.615850e-47 |
| Msa0087910 | Msa1080350 | 0.800005 | 1.765712e-48 | -8.615850e-47 |
| Msa0087910 | Msa1082170 | 0.817055 | 4.021043e-52 | -8.615850e-47 |
| Msa0087910 | Msa1083370 | 0.896716 | 2.824833e-76 | -8.615850e-47 |
| Msa0087910 | Msa1093500 | 0.800297 | 1.539903e-48 | -8.615850e-47 |
| Msa0087910 | Msa1096900 | 0.802704 | 4.945509e-49 | -8.615850e-47 |
| Msa0087910 | Msa1109310 | 0.847953 | 8.343996e-60 | -8.615850e-47 |
| Msa0087910 | Msa1124850 | 0.913183 | 8.264691e-84 | -8.615850e-47 |
| Msa0087910 | Msa1126520 | 0.805827 | 1.106101e-49 | -8.615850e-47 |
| Msa0087910 | Msa1126690 | 0.868588 | 5.839176e-66 | -8.615850e-47 |
| Msa0087910 | Msa1128120 | 0.851710 | 7.431531e-61 | -8.615850e-47 |
| Msa0087910 | Msa1147670 | 0.802646 | 5.083523e-49 | -8.615850e-47 |
| Msa0087910 | Msa1164150 | 0.859999 | 2.803961e-63 | -8.615850e-47 |
| Msa0087910 | Msa1165640 | 0.857452 | 1.616564e-62 | -8.615850e-47 |
| Msa0087910 | Msa1166570 | 0.809466 | 1.866554e-50 | -8.615850e-47 |
| Msa0087910 | Msa1166670 | 0.823550 | 1.303972e-53 | -8.615850e-47 |
| Msa0087910 | Msa1167540 | 0.863806 | 1.913516e-64 | -8.615850e-47 |
| Msa0087910 | Msa1167550 | 0.816283 | 5.989629e-52 | -8.615850e-47 |
| Msa0087910 | Msa1169180 | 0.848560 | 5.669168e-60 | -8.615850e-47 |
| Msa0087910 | Msa1180000 | 0.860895 | 1.500662e-63 | -8.615850e-47 |
| Msa0087910 | Msa1186030 | 0.839657 | 1.389655e-57 | -8.615850e-47 |
| Msa0087910 | Msa1203560 | 0.892261 | 1.868355e-74 | -8.615850e-47 |
| Msa0087910 | Msa1208330 | 0.868830 | 4.876899e-66 | -8.615850e-47 |
| Msa0087910 | Msa1219760 | 0.820304 | 7.360166e-53 | -8.615850e-47 |
| Msa0087910 | Msa1237040 | 0.848254 | 6.891074e-60 | -8.615850e-47 |
| Msa0087910 | Msa1240270 | 0.842944 | 1.896978e-58 | -8.615850e-47 |
| Msa0087910 | Msa1255830 | 0.868347 | 6.983856e-66 | -8.615850e-47 |
| Msa0087910 | Msa1255850 | 0.882243 | 1.226422e-70 | -8.615850e-47 |
| Msa0087910 | Msa1258460 | 0.838890 | 2.197339e-57 | -8.615850e-47 |
| Msa0087910 | Msa1258540 | 0.864820 | 9.234069e-65 | -8.615850e-47 |
| Msa0087910 | Msa1270640 | 0.857155 | 1.978923e-62 | -8.615850e-47 |
| Msa0087910 | Msa1270710 | 0.851654 | 7.711452e-61 | -8.615850e-47 |
| Msa0087910 | Msa1278130 | 0.856550 | 2.981721e-62 | -8.615850e-47 |
| Msa0087910 | Msa1284060 | 0.851810 | 6.964205e-61 | -8.615850e-47 |
| Msa0087910 | Msa1295150 | 0.866967 | 1.934686e-65 | -8.615850e-47 |
| Msa0087910 | Msa1295170 | 0.856096 | 4.053493e-62 | -8.615850e-47 |
| Msa0087910 | Msa1296090 | 0.841440 | 4.746807e-58 | -8.615850e-47 |
| Msa0087910 | Msa1311400 | 0.891970 | 2.440966e-74 | -8.615850e-47 |
| Msa0087910 | Msa1317390 | 0.819830 | 9.453077e-53 | -8.615850e-47 |
| Msa0087910 | Msa1330730 | 0.852198 | 5.403848e-61 | -8.615850e-47 |
| Msa0087910 | Msa1332250 | 0.816417 | 5.591554e-52 | -8.615850e-47 |
| Msa0087910 | Msa1333370 | 0.808289 | 3.331781e-50 | -8.615850e-47 |
| Msa0087910 | Msa1341130 | 0.807017 | 6.207481e-50 | -8.615850e-47 |
| Msa0087910 | Msa1341780 | 0.864616 | 1.069744e-64 | -8.615850e-47 |
| Msa0087910 | Msa1351020 | 0.844890 | 5.710686e-59 | -8.615850e-47 |
| Msa0087910 | Msa1351910 | 0.836392 | 9.616045e-57 | -8.615850e-47 |
| Msa0087910 | Msa1367540 | 0.831767 | 1.385184e-55 | -8.615850e-47 |
| Msa0087910 | Msa1368920 | 0.848875 | 4.636790e-60 | -8.615850e-47 |
| Msa0087910 | Msa1371410 | 0.837048 | 6.541756e-57 | -8.615850e-47 |
| Msa0087910 | Msa1385480 | 0.891750 | 2.987421e-74 | -8.615850e-47 |
| Msa0087910 | Msa1390760 | 0.858324 | 8.910188e-63 | -8.615850e-47 |
| Msa0087910 | Msa1392590 | 0.814073 | 1.855218e-51 | -8.615850e-47 |
| Msa0087910 | Msa1397660 | 0.803875 | 2.829301e-49 | -8.615850e-47 |
| Msa0087910 | Msa1410570 | 0.835679 | 1.458517e-56 | -8.615850e-47 |
| Msa0087910 | Msa1415620 | 0.835976 | 1.226260e-56 | -8.615850e-47 |
| Msa0087910 | Msa1424570 | 0.869039 | 4.172546e-66 | -8.615850e-47 |
| Msa0087910 | Msa1426120 | 0.844244 | 8.523092e-59 | -8.615850e-47 |
| Msa0087910 | Msa1432310 | 0.838072 | 3.573842e-57 | -8.615850e-47 |
| Msa0087910 | Msa1446410 | 0.852016 | 6.084847e-61 | -8.615850e-47 |
| Msa0087910 | Msa1449160 | 0.832122 | 1.131861e-55 | -8.615850e-47 |
| Msa0087910 | Msa1450560 | 0.849480 | 3.148028e-60 | -8.615850e-47 |
| Msa0087910 | Msa1463570 | 0.883771 | 3.383525e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087910 | MtrunA17_Chr1g0204941 | 98.467 | 261 | 4 | 0 | 1 | 261 | 1 | 261 | 0.0 | 533 |
| Msa0087910 | MtrunA17_Chr3g0081171 | 96.169 | 261 | 10 | 0 | 1 | 261 | 1 | 261 | 0.0 | 499 |
| Msa0087910 | MtrunA17_Chr5g0394611 | 94.253 | 261 | 15 | 0 | 1 | 261 | 1 | 261 | 1.91e-176 | 486 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087910 | AT3G04840.1 | 85.496 | 262 | 37 | 1 | 1 | 261 | 1 | 262 | 1.15e-163 | 454 |
| Msa0087910 | AT4G34670.1 | 85.115 | 262 | 38 | 1 | 1 | 261 | 1 | 262 | 2.43e-161 | 448 |
Find 107 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAAACTTGGGAGCTTTA+AGG | 0.168578 | 1_2:-68947440 | None:intergenic |
| ATTGGATTGGGCATGGGAGC+TGG | 0.247452 | 1_2:+68948184 | Msa0087910:three_prime_UTR |
| ATCAGATATGCATGCTATAT+TGG | 0.286319 | 1_2:+68948166 | Msa0087910:three_prime_UTR |
| GATATCATACCAATCCTTCT+TGG | 0.295389 | 1_2:-68945786 | None:intergenic |
| ATTTGGTCCTTGTAGGTTCA+TGG | 0.319619 | 1_2:+68947876 | Msa0087910:intron |
| GATCATAGTTTGTTCAAATT+CGG | 0.327663 | 1_2:+68948413 | Msa0087910:three_prime_UTR |
| GTTTCTCACCCCAAGTCTTT+TGG | 0.335249 | 1_2:+68948270 | Msa0087910:three_prime_UTR |
| AAAGCTCCCAAGTTTGATCT+TGG | 0.357514 | 1_2:+68947444 | Msa0087910:CDS |
| TAAGAACAAGCGGATCTCTA+AGG | 0.365175 | 1_2:+68945626 | Msa0087910:CDS |
| TTTATGTTACCGATGTTACT+TGG | 0.367972 | 1_2:-68945496 | None:intergenic |
| GTTTGATCTTGGAAAATTGA+TGG | 0.369245 | 1_2:+68947455 | Msa0087910:CDS |
| GAAATTGTTGGAGCTTGATT+TGG | 0.369823 | 1_2:+68947969 | Msa0087910:exon |
| AAATTCATTCCCGAGATGAT+TGG | 0.381702 | 1_2:+68947348 | Msa0087910:CDS |
| GAGCTGGGTGATTATTGATT+TGG | 0.385457 | 1_2:+68948200 | Msa0087910:three_prime_UTR |
| GGGACGAAGAACATGCATTC+AGG | 0.393353 | 1_2:+68946695 | Msa0087910:CDS |
| TTTAGGTTTCTGATGGATGT+AGG | 0.394357 | 1_2:-68945521 | None:intergenic |
| GACCCTCGTGTCTCGTACTC+AGG | 0.406163 | 1_2:+68945847 | Msa0087910:CDS |
| AAGTATACATTTAACCTCAT+TGG | 0.408595 | 1_2:+68948314 | Msa0087910:three_prime_UTR |
| TACCAATCCTTCTTGGCAAA+TGG | 0.412105 | 1_2:-68945779 | None:intergenic |
| GACTAATAAACATAAGTAAC+AGG | 0.412325 | 1_2:-68948021 | None:intergenic |
| TAGAGTGTTTGAGGTTTCAT+TGG | 0.413434 | 1_2:+68946660 | Msa0087910:CDS |
| AATTCATTCCCGAGATGATT+GGG | 0.425172 | 1_2:+68947349 | Msa0087910:CDS |
| GGCCATGATTTCACTGTTTG+CGG | 0.431193 | 1_2:-68945598 | None:intergenic |
| GTTTCATTGGCTGATCTTCA+AGG | 0.434675 | 1_2:+68946673 | Msa0087910:CDS |
| AGCATCATCTTGTGATTTGA+AGG | 0.436321 | 1_2:+68947314 | Msa0087910:CDS |
| TGCTGATCCATTTGCCAAGA+AGG | 0.436339 | 1_2:+68945772 | Msa0087910:CDS |
| CAAAATAAAACCGCTGCACT+TGG | 0.439170 | 1_2:-68948082 | None:intergenic |
| TCCGTCGCCATTTCATCAGC+AGG | 0.447536 | 1_2:-68947936 | None:intergenic |
| ACTCAAGCATAGAGTGTTTG+AGG | 0.454600 | 1_2:+68946651 | Msa0087910:CDS |
| TACCAAGAGGAGAGCTAACC+AGG | 0.455144 | 1_2:+68946993 | Msa0087910:CDS |
| TTGGATTGGGCATGGGAGCT+GGG | 0.457638 | 1_2:+68948185 | Msa0087910:three_prime_UTR |
| GGATGAACACGTTCTGCAAT+GGG | 0.459558 | 1_2:-68947404 | None:intergenic |
| ATCTTGTGATTTGAAGGGAT+TGG | 0.459981 | 1_2:+68947320 | Msa0087910:CDS |
| AACATGCATTCAGGAAGATT+AGG | 0.462005 | 1_2:+68946704 | Msa0087910:CDS |
| ATCCATTTGCCAAGAAGGAT+TGG | 0.465718 | 1_2:+68945777 | Msa0087910:CDS |
| TATGCATGCTATATTGGATT+GGG | 0.472378 | 1_2:+68948172 | Msa0087910:three_prime_UTR |
| ATCTCTTTCCCAATCATCTC+GGG | 0.472425 | 1_2:-68947357 | None:intergenic |
| CGGATGAACACGTTCTGCAA+TGG | 0.478333 | 1_2:-68947405 | None:intergenic |
| CTGACTAGATTGTGCATAGC+AGG | 0.478379 | 1_2:-68947025 | None:intergenic |
| AGAGAGGCCTGCTGATGAAA+TGG | 0.479682 | 1_2:+68947929 | Msa0087910:CDS |
| GAGGAACCTACTGAAATTGT+TGG | 0.484047 | 1_2:+68947957 | Msa0087910:CDS |
| GAAGGATTGGTATGATATCA+AGG | 0.488212 | 1_2:+68945790 | Msa0087910:CDS |
| ATATGCATGCTATATTGGAT+TGG | 0.488879 | 1_2:+68948171 | Msa0087910:three_prime_UTR |
| CGCCGCAAACAGTGAAATCA+TGG | 0.489198 | 1_2:+68945596 | Msa0087910:exon |
| GTCTCGTACTCAGGGTACTA+AGG | 0.497238 | 1_2:+68945856 | Msa0087910:CDS |
| TGGTCAGATCCGTAGGAAGA+TGG | 0.499805 | 1_2:+68947272 | Msa0087910:intron |
| CACCTGGTTAGCTCTCCTCT+TGG | 0.502596 | 1_2:-68946995 | None:intergenic |
| TTAGGTTTCTGATGGATGTA+GGG | 0.503263 | 1_2:-68945520 | None:intergenic |
| AACTGACAAACTGAGGTCAT+TGG | 0.506332 | 1_2:+68946885 | Msa0087910:CDS |
| TGAGGTCATTGGTGCGTAAG+TGG | 0.507827 | 1_2:+68946896 | Msa0087910:CDS |
| TCAAATCACAAGATGATGCT+TGG | 0.512552 | 1_2:-68947311 | None:intergenic |
| CGGATCTCTAAGGGGAAGAA+AGG | 0.516719 | 1_2:+68945636 | Msa0087910:CDS |
| TCATCTCGGGAATGAATTTG+AGG | 0.518795 | 1_2:-68947344 | None:intergenic |
| CATAGCAGGTCCTCTTCACC+TGG | 0.518854 | 1_2:-68947011 | None:intergenic |
| AAGAACAAGCGGATCTCTAA+GGG | 0.521243 | 1_2:+68945627 | Msa0087910:CDS |
| TTTCATTGGCTGATCTTCAA+GGG | 0.523908 | 1_2:+68946674 | Msa0087910:CDS |
| TGCTATATTGGATTGGGCAT+GGG | 0.525910 | 1_2:+68948178 | Msa0087910:three_prime_UTR |
| TATACATTTAACCTCATTGG+AGG | 0.528971 | 1_2:+68948317 | Msa0087910:three_prime_UTR |
| TTATGTTACCGATGTTACTT+GGG | 0.531693 | 1_2:-68945495 | None:intergenic |
| TCTTGCCGACATTCTTCACC+TGG | 0.534041 | 1_2:-68945826 | None:intergenic |
| CTTTATTTGGTCAGATCCGT+AGG | 0.534876 | 1_2:+68947265 | Msa0087910:intron |
| TTGAGAGCTGAAGATGTTCA+AGG | 0.537527 | 1_2:+68946727 | Msa0087910:CDS |
| ATGGGCACAACCAAAAGACT+TGG | 0.538736 | 1_2:-68948280 | None:intergenic |
| GCATCATCTTGTGATTTGAA+GGG | 0.543515 | 1_2:+68947315 | Msa0087910:CDS |
| GATCTCTTTCCCAATCATCT+CGG | 0.545949 | 1_2:-68947358 | None:intergenic |
| TGCTGATGAAATGGCGACGG+AGG | 0.555297 | 1_2:+68947938 | Msa0087910:CDS |
| GGAGAGCTAACCAGGTGAAG+AGG | 0.557404 | 1_2:+68947001 | Msa0087910:CDS |
| TGGGCACAACCAAAAGACTT+GGG | 0.557728 | 1_2:-68948279 | None:intergenic |
| GAATGACAGATTGCTTCAGA+TGG | 0.560187 | 1_2:+68946628 | Msa0087910:intron |
| CTCTGAGGATGTTGGCACAA+AGG | 0.562498 | 1_2:+68947905 | Msa0087910:CDS |
| CATCCATCAGAAACCTAAAA+CGG | 0.564666 | 1_2:+68945525 | Msa0087910:five_prime_UTR |
| GAAAATTCCTTCCTCCAATG+AGG | 0.566611 | 1_2:-68948328 | None:intergenic |
| GATCCGCTTGTTCTTACCAA+CGG | 0.569816 | 1_2:-68945619 | None:intergenic |
| CATTTAACCTCATTGGAGGA+AGG | 0.575102 | 1_2:+68948321 | Msa0087910:three_prime_UTR |
| ACAATCTAGTCAGATTAGAC+AGG | 0.580594 | 1_2:+68947035 | Msa0087910:CDS |
| CAAGCTCCAACAATTTCAGT+AGG | 0.582102 | 1_2:-68947963 | None:intergenic |
| AACAGTGAAATCATGGCCGT+TGG | 0.583510 | 1_2:+68945603 | Msa0087910:exon |
| GGAGATTACTCTGAGGATGT+TGG | 0.587473 | 1_2:+68947897 | Msa0087910:CDS |
| TTCTTCACCTGGAAAACTGA+AGG | 0.588083 | 1_2:-68945815 | None:intergenic |
| GGGTGATTATTGATTTGGTG+TGG | 0.590317 | 1_2:+68948205 | Msa0087910:three_prime_UTR |
| TGATCTCAACCATCTTCCTA+CGG | 0.590794 | 1_2:-68947281 | None:intergenic |
| ATGCTATATTGGATTGGGCA+TGG | 0.591758 | 1_2:+68948177 | Msa0087910:three_prime_UTR |
| GCCTGCTGATGAAATGGCGA+CGG | 0.592955 | 1_2:+68947935 | Msa0087910:CDS |
| TTCATTGGCTGATCTTCAAG+GGG | 0.595752 | 1_2:+68946675 | Msa0087910:CDS |
| CAGTAGTCTTGACATCCACA+TGG | 0.596992 | 1_2:-68946936 | None:intergenic |
| AACTCTTATTGAAGCCCATG+TGG | 0.605950 | 1_2:+68946921 | Msa0087910:CDS |
| GGCTCAGAGTACAGCAACAA+TGG | 0.609727 | 1_2:-68945550 | None:intergenic |
| TGATCTTGGAAAATTGATGG+AGG | 0.612140 | 1_2:+68947458 | Msa0087910:CDS |
| TGAGAGCTGAAGATGTTCAA+GGG | 0.612312 | 1_2:+68946728 | Msa0087910:CDS |
| ACCCTCGTGTCTCGTACTCA+GGG | 0.615233 | 1_2:+68945848 | Msa0087910:CDS |
| TGGCCGTTGGTAAGAACAAG+CGG | 0.617880 | 1_2:+68945616 | Msa0087910:CDS |
| ATCTCTAAGGGGAAGAAAGG+TGG | 0.621403 | 1_2:+68945639 | Msa0087910:CDS |
| CAATGGGTAAATACTAGACG+TGG | 0.627663 | 1_2:-68947388 | None:intergenic |
| CTACTGATAATTACACATTG+AGG | 0.636083 | 1_2:+68946953 | Msa0087910:CDS |
| AAGAGTGAGAGAGCTTGTGA+CGG | 0.642297 | 1_2:-68945571 | None:intergenic |
| AGCACAAGCCCAAGTAACAT+CGG | 0.644854 | 1_2:+68945487 | Msa0087910:five_prime_UTR |
| TACCCTGAGTACGAGACACG+AGG | 0.648922 | 1_2:-68945850 | None:intergenic |
| TTTGCATTGGATTTACCAAG+AGG | 0.649561 | 1_2:+68946980 | Msa0087910:CDS |
| ATGTTGGCACAAAGGTAGAG+AGG | 0.654238 | 1_2:+68947913 | Msa0087910:CDS |
| ACTTGGCTTACATAGAACTC+AGG | 0.670546 | 1_2:-68948065 | None:intergenic |
| TCTATGTAAGCCAAGTGCAG+CGG | 0.672422 | 1_2:+68948072 | Msa0087910:three_prime_UTR |
| GGGCACAACCAAAAGACTTG+GGG | 0.672707 | 1_2:-68948278 | None:intergenic |
| ACCCTGAGTACGAGACACGA+GGG | 0.678904 | 1_2:-68945849 | None:intergenic |
| ATTTCACAACTGACAAACTG+AGG | 0.681977 | 1_2:+68946878 | Msa0087910:CDS |
| AGTAGTCTTGACATCCACAT+GGG | 0.706350 | 1_2:-68946935 | None:intergenic |
| AGAACAAGCGGATCTCTAAG+GGG | 0.721950 | 1_2:+68945628 | Msa0087910:CDS |
| GGTTCATGGAGATTACTCTG+AGG | 0.741731 | 1_2:+68947890 | Msa0087910:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATTAAAATTTAAA+AGG | - | chr1_2:68947765-68947784 | None:intergenic | 0.0% |
| !!! | TTTTTATTTTTTATTTACAG+GGG | + | chr1_2:68946851-68946870 | Msa0087910:intron | 10.0% |
| !! | GATATTATGAAAATAAATAT+TGG | - | chr1_2:68947527-68947546 | None:intergenic | 10.0% |
| !! | TAAAAAAATGAAACTTTGAA+AGG | - | chr1_2:68945702-68945721 | None:intergenic | 15.0% |
| !!! | AAAATCTTTTGACAAATTTT+TGG | + | chr1_2:68946752-68946771 | Msa0087910:CDS | 15.0% |
| !!! | AAATCTTTTGACAAATTTTT+GGG | + | chr1_2:68946753-68946772 | Msa0087910:CDS | 15.0% |
| !!! | AAATATATCTGAATTTTGTT+TGG | + | chr1_2:68948133-68948152 | Msa0087910:three_prime_UTR | 15.0% |
| !! | TTTGTATTCATATTCAATTC+TGG | + | chr1_2:68945737-68945756 | Msa0087910:intron | 20.0% |
| !! | TTGTATTCATATTCAATTCT+GGG | + | chr1_2:68945738-68945757 | Msa0087910:intron | 20.0% |
| !! | GATACATTTCATTGAATATT+TGG | + | chr1_2:68945995-68946014 | Msa0087910:intron | 20.0% |
| !! | ATAAGCTATTTAAACAATCA+GGG | - | chr1_2:68946021-68946040 | None:intergenic | 20.0% |
| !! | TATAAGCTATTTAAACAATC+AGG | - | chr1_2:68946022-68946041 | None:intergenic | 20.0% |
| !! | TTATTTCCATAATAGCTTAT+AGG | - | chr1_2:68946143-68946162 | None:intergenic | 20.0% |
| !! | TCAGTATAAAAATTGTTTCA+TGG | - | chr1_2:68946477-68946496 | None:intergenic | 20.0% |
| !! | CTTAATGCTTATATAGAAAA+TGG | + | chr1_2:68946598-68946617 | Msa0087910:intron | 20.0% |
| !!! | AATAGCTTTTAATAATCTGA+AGG | - | chr1_2:68947677-68947696 | None:intergenic | 20.0% |
| ! | TTTGAAAGGAAATAGAAAAC+GGG | - | chr1_2:68945688-68945707 | None:intergenic | 25.0% |
| !! | CTTTGAAAGGAAATAGAAAA+CGG | - | chr1_2:68945689-68945708 | None:intergenic | 25.0% |
| ! | TTACAAAAAACAAGACAAAG+CGG | - | chr1_2:68945891-68945910 | None:intergenic | 25.0% |
| !!! | GATTTGATTTGTACATTGTT+AGG | + | chr1_2:68945919-68945938 | Msa0087910:intron | 25.0% |
| !! | GTTTTTCCTATAAGCTATTA+TGG | + | chr1_2:68946134-68946153 | Msa0087910:intron | 25.0% |
| ! | AAAAAAATGTTGTCAACTAG+CGG | - | chr1_2:68946440-68946459 | None:intergenic | 25.0% |
| ! | TTATACTGAATAACATATCG+TGG | + | chr1_2:68946488-68946507 | Msa0087910:intron | 25.0% |
| ! | AAGGAATAACAAATATGTCT+TGG | + | chr1_2:68946530-68946549 | Msa0087910:intron | 25.0% |
| ! | ACAACATTATGACAAATAGA+TGG | - | chr1_2:68946793-68946812 | None:intergenic | 25.0% |
| !! | TTTGTCATAATGTTGTTTGT+TGG | + | chr1_2:68946797-68946816 | Msa0087910:intron | 25.0% |
| !!! | AATCACTTGTTTTGAACTTA+TGG | + | chr1_2:68947191-68947210 | Msa0087910:intron | 25.0% |
| ! | ACTAATGTAACACCTTTATT+TGG | + | chr1_2:68947252-68947271 | Msa0087910:intron | 25.0% |
| !! | AATTTTCCAAGATCAAACTT+GGG | - | chr1_2:68947453-68947472 | None:intergenic | 25.0% |
| !! | AAAAACTTTGGTTGTTACTT+TGG | + | chr1_2:68947557-68947576 | Msa0087910:intron | 25.0% |
| !! | TTTGGAAAGTTTGAAGTAAT+TGG | - | chr1_2:68947626-68947645 | None:intergenic | 25.0% |
| !!! | TAATAATCTGAAGGTGTTTA+TGG | - | chr1_2:68947668-68947687 | None:intergenic | 25.0% |
| !!! | AATCAATGACACTTTTTAGA+TGG | - | chr1_2:68947843-68947862 | None:intergenic | 25.0% |
| !!! | AAAGTGTCATTGATTTGATT+TGG | + | chr1_2:68947848-68947867 | Msa0087910:intron | 25.0% |
| ! | GACTAATAAACATAAGTAAC+AGG | - | chr1_2:68948024-68948043 | None:intergenic | 25.0% |
| !! | TATACTTTTCAGCAATGAAT+GGG | - | chr1_2:68948301-68948320 | None:intergenic | 25.0% |
| ! | AAGTATACATTTAACCTCAT+TGG | + | chr1_2:68948314-68948333 | Msa0087910:three_prime_UTR | 25.0% |
| !!! | GATCATAGTTTGTTCAAATT+CGG | + | chr1_2:68948413-68948432 | Msa0087910:three_prime_UTR | 25.0% |
| ! | TTATGTTACCGATGTTACTT+GGG | - | chr1_2:68945498-68945517 | None:intergenic | 30.0% |
| TTTATGTTACCGATGTTACT+TGG | - | chr1_2:68945499-68945518 | None:intergenic | 30.0% | |
| ! | TTGTACATTGTTAGGTTGTT+TGG | + | chr1_2:68945927-68945946 | Msa0087910:intron | 30.0% |
| GTTACTTATGTTCGAAGATA+AGG | + | chr1_2:68946258-68946277 | Msa0087910:intron | 30.0% | |
| AAAAAATGTTGTCAACTAGC+GGG | - | chr1_2:68946439-68946458 | None:intergenic | 30.0% | |
| !! | AACAATAGTGGTTTGTTACA+AGG | + | chr1_2:68946511-68946530 | Msa0087910:intron | 30.0% |
| ! | AAATATGTCTTGGTCTTTCA+TGG | + | chr1_2:68946540-68946559 | Msa0087910:intron | 30.0% |
| ! | AATATGTCTTGGTCTTTCAT+GGG | + | chr1_2:68946541-68946560 | Msa0087910:intron | 30.0% |
| !!! | CTTTTGACAAATTTTTGGGT+AGG | + | chr1_2:68946757-68946776 | Msa0087910:intron | 30.0% |
| !!! | AAATTTTTGGGTAGGATATG+CGG | + | chr1_2:68946765-68946784 | Msa0087910:intron | 30.0% |
| CTACTGATAATTACACATTG+AGG | + | chr1_2:68946953-68946972 | Msa0087910:CDS | 30.0% | |
| CAGATATTAGTGATTCAACA+AGG | + | chr1_2:68947106-68947125 | Msa0087910:intron | 30.0% | |
| ! | AGGTATCCAACACATATTTT+AGG | + | chr1_2:68947126-68947145 | Msa0087910:intron | 30.0% |
| GTTCTACCTAAAATATGTGT+TGG | - | chr1_2:68947135-68947154 | None:intergenic | 30.0% | |
| AGCAGCATTTCATAAAAGAA+AGG | - | chr1_2:68947157-68947176 | None:intergenic | 30.0% | |
| !! | CTTTAAGGATCTTCACTTTT+CGG | - | chr1_2:68947428-68947447 | None:intergenic | 30.0% |
| ! | CAATTTTCCAAGATCAAACT+TGG | - | chr1_2:68947454-68947473 | None:intergenic | 30.0% |
| GTTTGATCTTGGAAAATTGA+TGG | + | chr1_2:68947455-68947474 | Msa0087910:CDS | 30.0% | |
| !! | GATTTGATTTGGTTGCTATT+TGG | + | chr1_2:68947859-68947878 | Msa0087910:intron | 30.0% |
| ATCAGATATGCATGCTATAT+TGG | + | chr1_2:68948166-68948185 | Msa0087910:three_prime_UTR | 30.0% | |
| ATATGCATGCTATATTGGAT+TGG | + | chr1_2:68948171-68948190 | Msa0087910:three_prime_UTR | 30.0% | |
| TATGCATGCTATATTGGATT+GGG | + | chr1_2:68948172-68948191 | Msa0087910:three_prime_UTR | 30.0% | |
| ! | GTATACTTTTCAGCAATGAA+TGG | - | chr1_2:68948302-68948321 | None:intergenic | 30.0% |
| TATACATTTAACCTCATTGG+AGG | + | chr1_2:68948317-68948336 | Msa0087910:three_prime_UTR | 30.0% | |
| ! | GCTTGTGCTTTTCTTCTTTA+TGG | - | chr1_2:68945476-68945495 | None:intergenic | 35.0% |
| ! | TTAGGTTTCTGATGGATGTA+GGG | - | chr1_2:68945523-68945542 | None:intergenic | 35.0% |
| ! | TTTAGGTTTCTGATGGATGT+AGG | - | chr1_2:68945524-68945543 | None:intergenic | 35.0% |
| CATCCATCAGAAACCTAAAA+CGG | + | chr1_2:68945525-68945544 | Msa0087910:five_prime_UTR | 35.0% | |
| AAAGGAAATAGAAAACGGGT+TGG | - | chr1_2:68945684-68945703 | None:intergenic | 35.0% | |
| GATATCATACCAATCCTTCT+TGG | - | chr1_2:68945789-68945808 | None:intergenic | 35.0% | |
| ! | GAAGGATTGGTATGATATCA+AGG | + | chr1_2:68945790-68945809 | Msa0087910:CDS | 35.0% |
| ! | CATTGTTAGGTTGTTTGGTT+TGG | + | chr1_2:68945932-68945951 | Msa0087910:intron | 35.0% |
| TAAGCTGCAAAAACATCTCA+TGG | + | chr1_2:68946160-68946179 | Msa0087910:intron | 35.0% | |
| TCAAATATGCCAATCCAAAC+AGG | + | chr1_2:68946281-68946300 | Msa0087910:intron | 35.0% | |
| TCTTGTAGTGCAGAAAATAG+CGG | + | chr1_2:68946369-68946388 | Msa0087910:intron | 35.0% | |
| AACATATCGTGGAACAATAG+TGG | + | chr1_2:68946499-68946518 | Msa0087910:intron | 35.0% | |
| ! | ATATGTCTTGGTCTTTCATG+GGG | + | chr1_2:68946542-68946561 | Msa0087910:intron | 35.0% |
| ! | GTTGCTGAAAGTTGATCAAT+TGG | + | chr1_2:68946564-68946583 | Msa0087910:intron | 35.0% |
| ! | TAGAGTGTTTGAGGTTTCAT+TGG | + | chr1_2:68946660-68946679 | Msa0087910:CDS | 35.0% |
| ! | TTTCATTGGCTGATCTTCAA+GGG | + | chr1_2:68946674-68946693 | Msa0087910:CDS | 35.0% |
| AACATGCATTCAGGAAGATT+AGG | + | chr1_2:68946704-68946723 | Msa0087910:CDS | 35.0% | |
| ATTTCACAACTGACAAACTG+AGG | + | chr1_2:68946878-68946897 | Msa0087910:CDS | 35.0% | |
| ! | ACATTGAGGATGTTTTGCAT+TGG | + | chr1_2:68946967-68946986 | Msa0087910:CDS | 35.0% |
| TTTGCATTGGATTTACCAAG+AGG | + | chr1_2:68946980-68946999 | Msa0087910:CDS | 35.0% | |
| ACAATCTAGTCAGATTAGAC+AGG | + | chr1_2:68947035-68947054 | Msa0087910:CDS | 35.0% | |
| TCAAATCACAAGATGATGCT+TGG | - | chr1_2:68947314-68947333 | None:intergenic | 35.0% | |
| AGCATCATCTTGTGATTTGA+AGG | + | chr1_2:68947314-68947333 | Msa0087910:CDS | 35.0% | |
| GCATCATCTTGTGATTTGAA+GGG | + | chr1_2:68947315-68947334 | Msa0087910:CDS | 35.0% | |
| ATCTTGTGATTTGAAGGGAT+TGG | + | chr1_2:68947320-68947339 | Msa0087910:CDS | 35.0% | |
| AAATTCATTCCCGAGATGAT+TGG | + | chr1_2:68947348-68947367 | Msa0087910:CDS | 35.0% | |
| AATTCATTCCCGAGATGATT+GGG | + | chr1_2:68947349-68947368 | Msa0087910:CDS | 35.0% | |
| TGATCTTGGAAAATTGATGG+AGG | + | chr1_2:68947458-68947477 | Msa0087910:CDS | 35.0% | |
| ! | AACAACCAAAGTTTTTGTGC+AGG | - | chr1_2:68947553-68947572 | None:intergenic | 35.0% |
| CTTTCCAAAAGCTCTCTATT+CGG | + | chr1_2:68947637-68947656 | Msa0087910:intron | 35.0% | |
| ! | GTTTTCACACAAGCACTTAT+TGG | - | chr1_2:68947730-68947749 | None:intergenic | 35.0% |
| TCAAGCTAAAAGAGAACAGA+AGG | - | chr1_2:68947789-68947808 | None:intergenic | 35.0% | |
| GAAATTGTTGGAGCTTGATT+TGG | + | chr1_2:68947969-68947988 | Msa0087910:exon | 35.0% | |
| TAAGAACAAGCGGATCTCTA+AGG | + | chr1_2:68945626-68945645 | Msa0087910:CDS | 40.0% | |
| AAGAACAAGCGGATCTCTAA+GGG | + | chr1_2:68945627-68945646 | Msa0087910:CDS | 40.0% | |
| ATCCATTTGCCAAGAAGGAT+TGG | + | chr1_2:68945777-68945796 | Msa0087910:CDS | 40.0% | |
| TACCAATCCTTCTTGGCAAA+TGG | - | chr1_2:68945782-68945801 | None:intergenic | 40.0% | |
| TTCTTCACCTGGAAAACTGA+AGG | - | chr1_2:68945818-68945837 | None:intergenic | 40.0% | |
| ! | GTTTTCCAGGTGAAGAATGT+CGG | + | chr1_2:68945821-68945840 | Msa0087910:CDS | 40.0% |
| CACTAAGTATACTCAGTCCA+AGG | - | chr1_2:68946308-68946327 | None:intergenic | 40.0% | |
| CTTGTAGTGCAGAAAATAGC+GGG | + | chr1_2:68946370-68946389 | Msa0087910:intron | 40.0% | |
| GAATGACAGATTGCTTCAGA+TGG | + | chr1_2:68946628-68946647 | Msa0087910:intron | 40.0% | |
| ! | ACTCAAGCATAGAGTGTTTG+AGG | + | chr1_2:68946651-68946670 | Msa0087910:CDS | 40.0% |
| ! | GTTTCATTGGCTGATCTTCA+AGG | + | chr1_2:68946673-68946692 | Msa0087910:CDS | 40.0% |
| ! | TTCATTGGCTGATCTTCAAG+GGG | + | chr1_2:68946675-68946694 | Msa0087910:CDS | 40.0% |
| TTGAGAGCTGAAGATGTTCA+AGG | + | chr1_2:68946727-68946746 | Msa0087910:CDS | 40.0% | |
| TGAGAGCTGAAGATGTTCAA+GGG | + | chr1_2:68946728-68946747 | Msa0087910:CDS | 40.0% | |
| AACTGACAAACTGAGGTCAT+TGG | + | chr1_2:68946885-68946904 | Msa0087910:CDS | 40.0% | |
| AACTCTTATTGAAGCCCATG+TGG | + | chr1_2:68946921-68946940 | Msa0087910:CDS | 40.0% | |
| ! | AGTAGTCTTGACATCCACAT+GGG | - | chr1_2:68946938-68946957 | None:intergenic | 40.0% |
| CTACGGATCTGACCAAATAA+AGG | - | chr1_2:68947267-68947286 | None:intergenic | 40.0% | |
| ! | CTTTATTTGGTCAGATCCGT+AGG | + | chr1_2:68947265-68947284 | Msa0087910:intron | 40.0% |
| TGATCTCAACCATCTTCCTA+CGG | - | chr1_2:68947284-68947303 | None:intergenic | 40.0% | |
| TCATCTCGGGAATGAATTTG+AGG | - | chr1_2:68947347-68947366 | None:intergenic | 40.0% | |
| ATCTCTTTCCCAATCATCTC+GGG | - | chr1_2:68947360-68947379 | None:intergenic | 40.0% | |
| GATCTCTTTCCCAATCATCT+CGG | - | chr1_2:68947361-68947380 | None:intergenic | 40.0% | |
| CAATGGGTAAATACTAGACG+TGG | - | chr1_2:68947391-68947410 | None:intergenic | 40.0% | |
| GATCAAACTTGGGAGCTTTA+AGG | - | chr1_2:68947443-68947462 | None:intergenic | 40.0% | |
| AAAGCTCCCAAGTTTGATCT+TGG | + | chr1_2:68947444-68947463 | Msa0087910:CDS | 40.0% | |
| TCGTTCCTGCACAAAAACTT+TGG | + | chr1_2:68947545-68947564 | Msa0087910:intron | 40.0% | |
| ! | GAAACCGAATAGAGAGCTTT+TGG | - | chr1_2:68947644-68947663 | None:intergenic | 40.0% |
| ATTTGGTCCTTGTAGGTTCA+TGG | + | chr1_2:68947876-68947895 | Msa0087910:intron | 40.0% | |
| GTAATCTCCATGAACCTACA+AGG | - | chr1_2:68947886-68947905 | None:intergenic | 40.0% | |
| GAGGAACCTACTGAAATTGT+TGG | + | chr1_2:68947957-68947976 | Msa0087910:CDS | 40.0% | |
| CAAGCTCCAACAATTTCAGT+AGG | - | chr1_2:68947966-68947985 | None:intergenic | 40.0% | |
| ACTTGGCTTACATAGAACTC+AGG | - | chr1_2:68948068-68948087 | None:intergenic | 40.0% | |
| CAAAATAAAACCGCTGCACT+TGG | - | chr1_2:68948085-68948104 | None:intergenic | 40.0% | |
| ! | ATGCTATATTGGATTGGGCA+TGG | + | chr1_2:68948177-68948196 | Msa0087910:three_prime_UTR | 40.0% |
| ! | TGCTATATTGGATTGGGCAT+GGG | + | chr1_2:68948178-68948197 | Msa0087910:three_prime_UTR | 40.0% |
| ! | GAGCTGGGTGATTATTGATT+TGG | + | chr1_2:68948200-68948219 | Msa0087910:three_prime_UTR | 40.0% |
| !! | GGGTGATTATTGATTTGGTG+TGG | + | chr1_2:68948205-68948224 | Msa0087910:three_prime_UTR | 40.0% |
| CATTTAACCTCATTGGAGGA+AGG | + | chr1_2:68948321-68948340 | Msa0087910:three_prime_UTR | 40.0% | |
| GAAAATTCCTTCCTCCAATG+AGG | - | chr1_2:68948331-68948350 | None:intergenic | 40.0% | |
| AGCACAAGCCCAAGTAACAT+CGG | + | chr1_2:68945487-68945506 | Msa0087910:five_prime_UTR | 45.0% | |
| !!! | GCACCGTTTTAGGTTTCTGA+TGG | - | chr1_2:68945531-68945550 | None:intergenic | 45.0% |
| ! | AGCAACAATGGCACCGTTTT+AGG | - | chr1_2:68945541-68945560 | None:intergenic | 45.0% |
| AAGAGTGAGAGAGCTTGTGA+CGG | - | chr1_2:68945574-68945593 | None:intergenic | 45.0% | |
| GGCCATGATTTCACTGTTTG+CGG | - | chr1_2:68945601-68945620 | None:intergenic | 45.0% | |
| AACAGTGAAATCATGGCCGT+TGG | + | chr1_2:68945603-68945622 | Msa0087910:exon | 45.0% | |
| GATCCGCTTGTTCTTACCAA+CGG | - | chr1_2:68945622-68945641 | None:intergenic | 45.0% | |
| AGAACAAGCGGATCTCTAAG+GGG | + | chr1_2:68945628-68945647 | Msa0087910:CDS | 45.0% | |
| ! | ATCTCTAAGGGGAAGAAAGG+TGG | + | chr1_2:68945639-68945658 | Msa0087910:CDS | 45.0% |
| TGCTGATCCATTTGCCAAGA+AGG | + | chr1_2:68945772-68945791 | Msa0087910:CDS | 45.0% | |
| ! | TTGTCAACTAGCGGGTAAAG+TGG | - | chr1_2:68946431-68946450 | None:intergenic | 45.0% |
| ! | CAGTAGTCTTGACATCCACA+TGG | - | chr1_2:68946939-68946958 | None:intergenic | 45.0% |
| CTGACTAGATTGTGCATAGC+AGG | - | chr1_2:68947028-68947047 | None:intergenic | 45.0% | |
| GGATGAACACGTTCTGCAAT+GGG | - | chr1_2:68947407-68947426 | None:intergenic | 45.0% | |
| !! | GGTTGCTATTTGGTCCTTGT+AGG | + | chr1_2:68947869-68947888 | Msa0087910:intron | 45.0% |
| GGTTCATGGAGATTACTCTG+AGG | + | chr1_2:68947890-68947909 | Msa0087910:intron | 45.0% | |
| ! | GGAGATTACTCTGAGGATGT+TGG | + | chr1_2:68947897-68947916 | Msa0087910:CDS | 45.0% |
| ATGTTGGCACAAAGGTAGAG+AGG | + | chr1_2:68947913-68947932 | Msa0087910:CDS | 45.0% | |
| TCTATGTAAGCCAAGTGCAG+CGG | + | chr1_2:68948072-68948091 | Msa0087910:three_prime_UTR | 45.0% | |
| ! | GTTTCTCACCCCAAGTCTTT+TGG | + | chr1_2:68948270-68948289 | Msa0087910:three_prime_UTR | 45.0% |
| TGGGCACAACCAAAAGACTT+GGG | - | chr1_2:68948282-68948301 | None:intergenic | 45.0% | |
| ATGGGCACAACCAAAAGACT+TGG | - | chr1_2:68948283-68948302 | None:intergenic | 45.0% | |
| !!! | TATTTTTATTTTTTATTTAC+AGG | + | chr1_2:68946849-68946868 | Msa0087910:intron | 5.0% |
| !!! | ATTTTTATTTTTTATTTACA+GGG | + | chr1_2:68946850-68946869 | Msa0087910:intron | 5.0% |
| !! | ATATTATGAAAATAAATATT+GGG | - | chr1_2:68947526-68947545 | None:intergenic | 5.0% |
| GGCTCAGAGTACAGCAACAA+TGG | - | chr1_2:68945553-68945572 | None:intergenic | 50.0% | |
| CGCCGCAAACAGTGAAATCA+TGG | + | chr1_2:68945596-68945615 | Msa0087910:exon | 50.0% | |
| ! | TGGCCGTTGGTAAGAACAAG+CGG | + | chr1_2:68945616-68945635 | Msa0087910:CDS | 50.0% |
| ! | CGGATCTCTAAGGGGAAGAA+AGG | + | chr1_2:68945636-68945655 | Msa0087910:CDS | 50.0% |
| ! | CAAGGCTCCTTCAGTTTTCC+AGG | + | chr1_2:68945808-68945827 | Msa0087910:CDS | 50.0% |
| TCTTGCCGACATTCTTCACC+TGG | - | chr1_2:68945829-68945848 | None:intergenic | 50.0% | |
| ! | GTCTCGTACTCAGGGTACTA+AGG | + | chr1_2:68945856-68945875 | Msa0087910:CDS | 50.0% |
| TGCCAATCCAAACAGGTCCT+TGG | + | chr1_2:68946288-68946307 | Msa0087910:intron | 50.0% | |
| GTCCAAGGACCTGTTTGGAT+TGG | - | chr1_2:68946293-68946312 | None:intergenic | 50.0% | |
| ACTCAGTCCAAGGACCTGTT+TGG | - | chr1_2:68946298-68946317 | None:intergenic | 50.0% | |
| GGGACGAAGAACATGCATTC+AGG | + | chr1_2:68946695-68946714 | Msa0087910:CDS | 50.0% | |
| TGAGGTCATTGGTGCGTAAG+TGG | + | chr1_2:68946896-68946915 | Msa0087910:CDS | 50.0% | |
| TACCAAGAGGAGAGCTAACC+AGG | + | chr1_2:68946993-68947012 | Msa0087910:CDS | 50.0% | |
| TGGTCAGATCCGTAGGAAGA+TGG | + | chr1_2:68947272-68947291 | Msa0087910:intron | 50.0% | |
| CGGATGAACACGTTCTGCAA+TGG | - | chr1_2:68947408-68947427 | None:intergenic | 50.0% | |
| ! | CTCTGAGGATGTTGGCACAA+AGG | + | chr1_2:68947905-68947924 | Msa0087910:CDS | 50.0% |
| AGAGAGGCCTGCTGATGAAA+TGG | + | chr1_2:68947929-68947948 | Msa0087910:CDS | 50.0% | |
| GGGCACAACCAAAAGACTTG+GGG | - | chr1_2:68948281-68948300 | None:intergenic | 50.0% | |
| ACCCTCGTGTCTCGTACTCA+GGG | + | chr1_2:68945848-68945867 | Msa0087910:CDS | 55.0% | |
| ACCCTGAGTACGAGACACGA+GGG | - | chr1_2:68945852-68945871 | None:intergenic | 55.0% | |
| TACCCTGAGTACGAGACACG+AGG | - | chr1_2:68945853-68945872 | None:intergenic | 55.0% | |
| ! | CACCTGGTTAGCTCTCCTCT+TGG | - | chr1_2:68946998-68947017 | None:intergenic | 55.0% |
| GGAGAGCTAACCAGGTGAAG+AGG | + | chr1_2:68947001-68947020 | Msa0087910:CDS | 55.0% | |
| CATAGCAGGTCCTCTTCACC+TGG | - | chr1_2:68947014-68947033 | None:intergenic | 55.0% | |
| GCCTGCTGATGAAATGGCGA+CGG | + | chr1_2:68947935-68947954 | Msa0087910:CDS | 55.0% | |
| TCCGTCGCCATTTCATCAGC+AGG | - | chr1_2:68947939-68947958 | None:intergenic | 55.0% | |
| TGCTGATGAAATGGCGACGG+AGG | + | chr1_2:68947938-68947957 | Msa0087910:CDS | 55.0% | |
| ! | ATTGGATTGGGCATGGGAGC+TGG | + | chr1_2:68948184-68948203 | Msa0087910:three_prime_UTR | 55.0% |
| ! | TTGGATTGGGCATGGGAGCT+GGG | + | chr1_2:68948185-68948204 | Msa0087910:three_prime_UTR | 55.0% |
| GACCCTCGTGTCTCGTACTC+AGG | + | chr1_2:68945847-68945866 | Msa0087910:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 68945453 | 68948448 | 68945453 | ID=Msa0087910;Name=Msa0087910 |
| chr1_2 | mRNA | 68945453 | 68948448 | 68945453 | ID=Msa0087910-mRNA-1;Parent=Msa0087910;Name=Msa0087910-mRNA-1;_AED=0.09;_eAED=0.09;_QI=162|1|1|1|1|1|6|462|261 |
| chr1_2 | exon | 68945453 | 68945673 | 68945453 | ID=Msa0087910-mRNA-1:exon:23618;Parent=Msa0087910-mRNA-1 |
| chr1_2 | exon | 68945772 | 68945877 | 68945772 | ID=Msa0087910-mRNA-1:exon:23619;Parent=Msa0087910-mRNA-1 |
| chr1_2 | exon | 68946637 | 68946774 | 68946637 | ID=Msa0087910-mRNA-1:exon:23620;Parent=Msa0087910-mRNA-1 |
| chr1_2 | exon | 68946871 | 68947056 | 68946871 | ID=Msa0087910-mRNA-1:exon:23621;Parent=Msa0087910-mRNA-1 |
| chr1_2 | exon | 68947279 | 68947479 | 68947279 | ID=Msa0087910-mRNA-1:exon:23622;Parent=Msa0087910-mRNA-1 |
| chr1_2 | exon | 68947891 | 68948448 | 68947891 | ID=Msa0087910-mRNA-1:exon:23623;Parent=Msa0087910-mRNA-1 |
| chr1_2 | five_prime_UTR | 68945453 | 68945614 | 68945453 | ID=Msa0087910-mRNA-1:five_prime_utr;Parent=Msa0087910-mRNA-1 |
| chr1_2 | CDS | 68945615 | 68945673 | 68945615 | ID=Msa0087910-mRNA-1:cds;Parent=Msa0087910-mRNA-1 |
| chr1_2 | CDS | 68945772 | 68945877 | 68945772 | ID=Msa0087910-mRNA-1:cds;Parent=Msa0087910-mRNA-1 |
| chr1_2 | CDS | 68946637 | 68946774 | 68946637 | ID=Msa0087910-mRNA-1:cds;Parent=Msa0087910-mRNA-1 |
| chr1_2 | CDS | 68946871 | 68947056 | 68946871 | ID=Msa0087910-mRNA-1:cds;Parent=Msa0087910-mRNA-1 |
| chr1_2 | CDS | 68947279 | 68947479 | 68947279 | ID=Msa0087910-mRNA-1:cds;Parent=Msa0087910-mRNA-1 |
| chr1_2 | CDS | 68947891 | 68947986 | 68947891 | ID=Msa0087910-mRNA-1:cds;Parent=Msa0087910-mRNA-1 |
| chr1_2 | three_prime_UTR | 68947987 | 68948448 | 68947987 | ID=Msa0087910-mRNA-1:three_prime_utr;Parent=Msa0087910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
