AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0789930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0789930 MtrunA17_Chr1g0195781 98.907 366 4 0 1 366 1 366 0.0 756
Msa0789930 MtrunA17_Chr7g0245941 92.350 366 28 0 1 366 1 366 0.0 721
Msa0789930 MtrunA17_Chr8g0351631 64.481 366 122 1 1 366 83 440 1.33e-178 503
Msa0789930 MtrunA17_Chr8g0351611 64.499 369 121 4 1 366 1 362 3.04e-170 479
Msa0789930 MtrunA17_Chr8g0351581 69.453 311 94 1 56 366 21 330 4.33e-163 459
Msa0789930 MtrunA17_Chr8g0351641 63.462 312 109 1 55 366 1 307 3.76e-148 421
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0789930 AT2G45440.1 75.410 366 89 1 1 366 1 365 0.0 581
Msa0789930 AT3G60880.2 74.590 366 92 1 1 366 1 365 0.0 568
Msa0789930 AT3G60880.1 74.317 366 92 1 1 366 1 364 0.0 566

Find 111 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAATAGAATTTGCCAATT+TGG 0.151527 5_3:-554426 Msa0789930:CDS
CCGCATTGGGAGGTGGAAAT+TGG 0.197311 5_3:+555783 None:intergenic
ACCTATTTCCTTCACCAAAT+TGG 0.206485 5_3:+554412 None:intergenic
GGTGGGAAAATCAAGGTTAT+TGG 0.223073 5_3:-555022 Msa0789930:CDS
TGGTTAGTCGATATTAATTT+AGG 0.225709 5_3:-554331 Msa0789930:exon
CTTGTACTGGTTACTTTGTT+TGG 0.243493 5_3:-554171 Msa0789930:three_prime_UTR
GATTATTCAGGAACTCTTAC+TGG 0.297793 5_3:-555831 Msa0789930:intron
ATCAAGGTTATTGGAAATAC+TGG 0.303578 5_3:-555013 Msa0789930:CDS
GCCAATTTGGTGAAGGAAAT+AGG 0.310672 5_3:-554413 Msa0789930:CDS
ATAGAAATTATGAAATGAAT+TGG 0.315357 5_3:+556489 None:intergenic
GCGCACACAGTTAATTGTTT+TGG 0.323823 5_3:-555043 Msa0789930:CDS
GTTGCAAGCAATCTGATTCC+TGG 0.342044 5_3:-554626 Msa0789930:CDS
CACTTCTAAAATTGCATGAA+TGG 0.359920 5_3:+554091 None:intergenic
TAAGATCTTGTTTCTTGTAC+TGG 0.369891 5_3:-554184 Msa0789930:three_prime_UTR
GTGTTCAAACCAATGGGATT+TGG 0.372649 5_3:+554518 None:intergenic
TGTTGGAACTGAAGACGTTC+AGG 0.373512 5_3:-554378 Msa0789930:CDS
AGCTCTTGCCTTTGATTGAC+TGG 0.378010 5_3:-554553 Msa0789930:CDS
GCTACATTGAAGAGCTATAC+TGG 0.379000 5_3:-556356 Msa0789930:CDS
ATCAATGCCATGATGCTAGA+TGG 0.385109 5_3:-554676 Msa0789930:CDS
TTGCTCAACTTGGAGTTGTC+AGG 0.401383 5_3:-554490 Msa0789930:CDS
ACAAATGGCAACCTGAAAAC+TGG 0.401923 5_3:+554467 None:intergenic
TTTCATAATTTCTATCAGTT+AGG 0.402264 5_3:-556481 Msa0789930:five_prime_UTR
TGTTAGTTATTTATTGAGTT+AGG 0.404137 5_3:-554307 Msa0789930:three_prime_UTR
CTTTCAAAGTGTGCTTTCCA+TGG 0.406034 5_3:-554870 Msa0789930:CDS
AACACGGCTCTTGCTCAACT+TGG 0.407658 5_3:-554500 Msa0789930:CDS
GGAAGGATGAACCGGAAAAC+CGG 0.409763 5_3:+556316 None:intergenic
TCATCTCAAAACTCCGCATT+GGG 0.420171 5_3:+555770 None:intergenic
GACTTATTGTATCCTTTCTC+CGG 0.423830 5_3:-554274 Msa0789930:three_prime_UTR
ACTTCTAAAATTGCATGAAT+GGG 0.425827 5_3:+554092 None:intergenic
CTTCATATAAACCCTTACTA+TGG 0.428403 5_3:-554923 Msa0789930:CDS
GGAGTTGAAGGTGTTATTGT+TGG 0.429517 5_3:-555121 Msa0789930:CDS
CATAGTAAGGGTTTATATGA+AGG 0.438848 5_3:+554924 None:intergenic
TTACTATGGCAAAACCTCAT+TGG 0.439136 5_3:-554909 Msa0789930:CDS
TATAATGTGCCTTCACGAAC+TGG 0.441534 5_3:-554833 Msa0789930:CDS
GTTATTGTTGGTGGCACAAC+TGG 0.447799 5_3:-555109 Msa0789930:CDS
AATTATGTATGTTGTTGTGC+TGG 0.460636 5_3:-554226 Msa0789930:three_prime_UTR
CTTAGCTCAAAATACTTGCT+TGG 0.461095 5_3:-554780 Msa0789930:CDS
GCTCAAAATACTTGCTTGGC+TGG 0.463469 5_3:-554776 Msa0789930:CDS
TTCATCTCAAAACTCCGCAT+TGG 0.466411 5_3:+555769 None:intergenic
GTGAAGGTCAATTAATGAGC+TGG 0.470889 5_3:-555087 Msa0789930:CDS
ATGCGAGAACTCATGTTTGA+GGG 0.476788 5_3:-554599 Msa0789930:CDS
AGATGGGGTTATGGAGCTAC+TGG 0.478069 5_3:-554659 Msa0789930:CDS
TCAAGATCAAATCGACCATC+AGG 0.480309 5_3:+555181 None:intergenic
GTTGAAGGTGTTATTGTTGG+TGG 0.483414 5_3:-555118 Msa0789930:CDS
TAGAAATTATGAAATGAATT+GGG 0.484201 5_3:+556490 None:intergenic
GGTGTCTGCTTCAGAGGATC+CGG 0.484695 5_3:-556335 Msa0789930:CDS
CAAAACTCCGCATTGGGAGG+TGG 0.487292 5_3:+555776 None:intergenic
CATGATGCTAGATGGGGTTA+TGG 0.493610 5_3:-554668 Msa0789930:CDS
TCATTGTAATAATGTTCCAT+TGG 0.499103 5_3:+554031 None:intergenic
TACTTGCTTGGCTGGTGTCA+AGG 0.500800 5_3:-554768 Msa0789930:CDS
CAGATCGAGAGTGGAGTTGA+AGG 0.501168 5_3:-555133 Msa0789930:CDS
ATAGAATCGTTGTGTGGAGC+GGG 0.501345 5_3:-554706 Msa0789930:CDS
AATGCGAGAACTCATGTTTG+AGG 0.508177 5_3:-554600 Msa0789930:CDS
GTAAGATCGGAAGGATGAAC+CGG 0.510311 5_3:+556308 None:intergenic
AACCAATGGGATTTGGCATG+TGG 0.510972 5_3:+554525 None:intergenic
TATACTGGTGTCTGCTTCAG+AGG 0.514396 5_3:-556341 Msa0789930:CDS
ATTTGAAGTTCACTGAGGTA+TGG 0.516290 5_3:-556378 Msa0789930:exon
GCAATTCATGCCACTGAGCA+AGG 0.519046 5_3:-554971 Msa0789930:CDS
TTTCAAAGTGTGCTTTCCAT+GGG 0.520623 5_3:-554869 Msa0789930:CDS
GATTTCACAGCTGCTTGTGT+AGG 0.522599 5_3:+555805 None:intergenic
AAGAGCTTAGAATTCAATGT+AGG 0.522936 5_3:+554569 None:intergenic
AAGAGCCGTGTTCAAACCAA+TGG 0.526094 5_3:+554511 None:intergenic
TCTAATGGGAGAGGTACAAA+TGG 0.526400 5_3:+554452 None:intergenic
AACTTCAAATCGAGCTGCTG+TGG 0.528627 5_3:+556391 None:intergenic
AATCGACCATCAGGTAGGTA+TGG 0.528759 5_3:+555190 None:intergenic
AGAATTTGCCAATTTGGTGA+AGG 0.533742 5_3:-554420 Msa0789930:CDS
CAAAACCTCATTGGATGGTA+TGG 0.535451 5_3:-554900 Msa0789930:CDS
GTGGAGAAGACGGTGGTTGG+CGG 0.540986 5_3:+556410 None:intergenic
AGGAATGTGTGGGAAATGAC+AGG 0.543586 5_3:-554748 Msa0789930:CDS
TCTTGAAGCATACGATGCCT+TGG 0.545550 5_3:-555164 Msa0789930:CDS
TTCCACATGCCAAATCCCAT+TGG 0.545798 5_3:-554527 Msa0789930:CDS
TGGCGGTTAATACAATATGC+AGG 0.549833 5_3:+554137 None:intergenic
GGCTGGTGTCAAGGAATGTG+TGG 0.556357 5_3:-554759 Msa0789930:CDS
TCGAGCTGCTGTGGAGAAGA+CGG 0.566913 5_3:+556400 None:intergenic
CATAACCCCATCTAGCATCA+TGG 0.567567 5_3:+554669 None:intergenic
TTGTTAGTAGTAAGATCGGA+AGG 0.567613 5_3:+556299 None:intergenic
TCAATGCCATGATGCTAGAT+GGG 0.567969 5_3:-554675 Msa0789930:CDS
TGGAAAAGCCAGTCAATCAA+AGG 0.572095 5_3:+554545 None:intergenic
TATGGCAAAACCTCATTGGA+TGG 0.575275 5_3:-554905 Msa0789930:CDS
ATATATGATCGTGGGTCCCA+TGG 0.576230 5_3:+554853 None:intergenic
ATAGTAAGGGTTTATATGAA+GGG 0.577466 5_3:+554925 None:intergenic
AGAGCCGTGTTCAAACCAAT+GGG 0.577523 5_3:+554512 None:intergenic
GTAAATATGCAGATCGAGAG+TGG 0.578320 5_3:-555142 Msa0789930:CDS
TGAAGGTCAATTAATGAGCT+GGG 0.584644 5_3:-555086 Msa0789930:CDS
TATTTACAGGACTTGTACAG+AGG 0.599967 5_3:-555251 Msa0789930:intron
ATGAGTTCTCGCATTAAACC+AGG 0.602598 5_3:+554608 None:intergenic
GCTGTGGAGAAGACGGTGGT+TGG 0.609598 5_3:+556407 None:intergenic
AATAGAATCGTTGTGTGGAG+CGG 0.613867 5_3:-554707 Msa0789930:CDS
AGAGGTAGACATCAAACCAA+TGG 0.618147 5_3:-554047 Msa0789930:three_prime_UTR
AAATCCCATTGGTTTGAACA+CGG 0.620889 5_3:-554516 Msa0789930:CDS
TCTCAAAACTCCGCATTGGG+AGG 0.623035 5_3:+555773 None:intergenic
GGCACATTATATATGATCGT+GGG 0.623516 5_3:+554845 None:intergenic
AGGCACATTATATATGATCG+TGG 0.625176 5_3:+554844 None:intergenic
AAGGATACAATAAGTCTACA+AGG 0.625433 5_3:+554281 None:intergenic
AAAACTCCATACCTACCTGA+TGG 0.627623 5_3:-555196 Msa0789930:CDS
ATACTGGAAGTAACTCGACA+AGG 0.635535 5_3:-554997 Msa0789930:CDS
TACTGGAAGTAACTCGACAA+GGG 0.637824 5_3:-554996 Msa0789930:CDS
CTCGATCTGCATATTTACCA+AGG 0.639513 5_3:+555147 None:intergenic
GGTTTCTCAGTAAACCGCGA+AGG 0.644815 5_3:-556460 Msa0789930:five_prime_UTR
ATGTCTTGACCAGTTCGTGA+AGG 0.650374 5_3:+554824 None:intergenic
TATTCAGGAACTCTTACTGG+AGG 0.652852 5_3:-555828 Msa0789930:intron
GTTGGTGGCACAACTGGTGA+AGG 0.663404 5_3:-555103 Msa0789930:CDS
GCTGGTGTCAAGGAATGTGT+GGG 0.663954 5_3:-554758 Msa0789930:CDS
CTGATAATAGAATCGTTGTG+TGG 0.669847 5_3:-554712 Msa0789930:CDS
AACCGCAAAACCTTGCTCAG+TGG 0.673625 5_3:+554961 None:intergenic
GATCAAATCGACCATCAGGT+AGG 0.678861 5_3:+555185 None:intergenic
AGCAACCATACCATCCAATG+AGG 0.685283 5_3:+554895 None:intergenic
CCAATTTCCACCTCCCAATG+CGG 0.691962 5_3:-555783 Msa0789930:CDS
CAATGCCATGATGCTAGATG+GGG 0.711874 5_3:-554674 Msa0789930:CDS
GCTCGATTTGAAGTTCACTG+AGG 0.768591 5_3:-556383 Msa0789930:five_prime_UTR
AGCTGCTGTGGAGAAGACGG+TGG 0.771661 5_3:+556403 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAACATTAAATAAAAAAAT+TGG + chr5_3:554643-554662 None:intergenic 10.0%
!! TAGAAATTATGAAATGAATT+GGG + chr5_3:554014-554033 None:intergenic 15.0%
!! ATAGAAATTATGAAATGAAT+TGG + chr5_3:554015-554034 None:intergenic 15.0%
!! AGATTTCAAAATAAAGAAAA+CGG + chr5_3:554248-554267 None:intergenic 15.0%
!! TTTCATAATTTCTATCAGTT+AGG - chr5_3:554020-554039 Msa0789930:three_prime_UTR 20.0%
!! AATGAATTCGATGAAATAAA+CGG - chr5_3:554412-554431 Msa0789930:CDS 20.0%
!!! TATGATTTTAATGATGATGA+AGG - chr5_3:554459-554478 Msa0789930:CDS 20.0%
!!! ATGATTTTAATGATGATGAA+GGG - chr5_3:554460-554479 Msa0789930:CDS 20.0%
!!! GTTTTCATCTTTTTATTTTC+TGG - chr5_3:554888-554907 Msa0789930:CDS 20.0%
!! TATTGTGATTTATGATGAAA+CGG - chr5_3:554941-554960 Msa0789930:CDS 20.0%
!!! TTCTAAGGAGTATATTTAAA+AGG - chr5_3:555136-555155 Msa0789930:CDS 20.0%
!! AAGCTATATATTGTATTTAC+AGG - chr5_3:555237-555256 Msa0789930:CDS 20.0%
!!! ATTCTATTCTTTTCTCTAAT+GGG + chr5_3:556066-556085 None:intergenic 20.0%
!!! AATTCTATTCTTTTCTCTAA+TGG + chr5_3:556067-556086 None:intergenic 20.0%
!! TGTTAGTTATTTATTGAGTT+AGG - chr5_3:556194-556213 Msa0789930:intron 20.0%
!! GTTTTTGTTAGTAGTAAGAT+CGG + chr5_3:554209-554228 None:intergenic 25.0%
!! TTGAGAGTATAATTTAGCTA+AGG - chr5_3:554511-554530 Msa0789930:CDS 25.0%
!!! TTTTGAGATGAAAAATAGGT+TGG - chr5_3:554743-554762 Msa0789930:CDS 25.0%
! AGTATCAAAACTAATGAATG+TGG + chr5_3:554790-554809 None:intergenic 25.0%
! ATTGTGATTTATGATGAAAC+GGG - chr5_3:554942-554961 Msa0789930:CDS 25.0%
! GAAAAACAAATCCAAATTAG+TGG + chr5_3:554997-555016 None:intergenic 25.0%
! AATCTCAAATTGAATGATAG+AGG + chr5_3:555019-555038 None:intergenic 25.0%
!!! AGATTTTGTTTTGACATACA+AGG - chr5_3:555034-555053 Msa0789930:CDS 25.0%
!! TAAGGAGTATATTTAAAAGG+TGG - chr5_3:555139-555158 Msa0789930:CDS 25.0%
!!! TGTTGCTTTTGTTTTAATCA+TGG - chr5_3:555192-555211 Msa0789930:CDS 25.0%
!! AATCATGGAATCACAAATTT+TGG - chr5_3:555207-555226 Msa0789930:CDS 25.0%
! ATAGTAAGGGTTTATATGAA+GGG + chr5_3:555579-555598 None:intergenic 25.0%
! AAGAATAGAATTTGCCAATT+TGG - chr5_3:556075-556094 Msa0789930:intron 25.0%
!! TGGTTAGTCGATATTAATTT+AGG - chr5_3:556170-556189 Msa0789930:intron 25.0%
! TTGAAGTTTCACAAAAAAAC+CGG + chr5_3:556249-556268 None:intergenic 25.0%
!!! ACTTCTAAAATTGCATGAAT+GGG + chr5_3:556412-556431 None:intergenic 25.0%
! TCATTGTAATAATGTTCCAT+TGG + chr5_3:556473-556492 None:intergenic 25.0%
TAACTGAAAAAAAACCTTCG+CGG + chr5_3:554058-554077 None:intergenic 30.0%
TTACTACTAACAAAAACACC+AGG - chr5_3:554212-554231 Msa0789930:three_prime_UTR 30.0%
!! TTGATTTGTCTATATGCATG+TGG - chr5_3:554333-554352 Msa0789930:exon 30.0%
!! ATTGCAGCTGAATTTGATTT+TGG - chr5_3:554356-554375 Msa0789930:CDS 30.0%
! CAAAATCTAAGATACAGGAA+TGG + chr5_3:554550-554569 None:intergenic 30.0%
! GCTAACAAAATCTAAGATAC+AGG + chr5_3:554555-554574 None:intergenic 30.0%
! AGATTTTGTTAGCATGTATG+AGG - chr5_3:554562-554581 Msa0789930:CDS 30.0%
AGCACAATCAATATCAATCA+CGG + chr5_3:554589-554608 None:intergenic 30.0%
GTTTGTCTGTATGATTATTC+AGG - chr5_3:554658-554677 Msa0789930:CDS 30.0%
!!! GGAGTTTTGAGATGAAAAAT+AGG - chr5_3:554739-554758 Msa0789930:CDS 30.0%
CTTGCTTATTTCCACTAATT+TGG - chr5_3:554983-555002 Msa0789930:CDS 30.0%
ACAAAAGCAACAACACAAAT+AGG + chr5_3:555184-555203 None:intergenic 30.0%
!!! ACACAGTTAATTGTTTTGGT+GGG - chr5_3:555462-555481 Msa0789930:intron 30.0%
ATCAAGGTTATTGGAAATAC+TGG - chr5_3:555488-555507 Msa0789930:intron 30.0%
CATAGTAAGGGTTTATATGA+AGG + chr5_3:555580-555599 None:intergenic 30.0%
CTTCATATAAACCCTTACTA+TGG - chr5_3:555578-555597 Msa0789930:intron 30.0%
!!! GCTAAGTTTTGAATTACATG+CGG + chr5_3:555707-555726 None:intergenic 30.0%
AAGAGCTTAGAATTCAATGT+AGG + chr5_3:555935-555954 None:intergenic 30.0%
AAGGATACAATAAGTCTACA+AGG + chr5_3:556223-556242 None:intergenic 30.0%
AATTATGTATGTTGTTGTGC+TGG - chr5_3:556275-556294 Msa0789930:intron 30.0%
! TAAGATCTTGTTTCTTGTAC+TGG - chr5_3:556317-556336 Msa0789930:CDS 30.0%
!! CACTTCTAAAATTGCATGAA+TGG + chr5_3:556413-556432 None:intergenic 30.0%
! TTTTTGCTTAAAATGCTGAG+AGG - chr5_3:556436-556455 Msa0789930:five_prime_UTR 30.0%
!!! GCGAAGGTTTTTTTTCAGTT+AGG - chr5_3:554057-554076 Msa0789930:three_prime_UTR 35.0%
! ATTTGAAGTTCACTGAGGTA+TGG - chr5_3:554123-554142 Msa0789930:three_prime_UTR 35.0%
TTGTTAGTAGTAAGATCGGA+AGG + chr5_3:554205-554224 None:intergenic 35.0%
GAAAACGGAAAATTTGAACC+TGG + chr5_3:554233-554252 None:intergenic 35.0%
GCACAATCAATATCAATCAC+GGG + chr5_3:554588-554607 None:intergenic 35.0%
GATTATTCAGGAACTCTTAC+TGG - chr5_3:554670-554689 Msa0789930:CDS 35.0%
CAAGCATTATTCCACTAAGT+GGG - chr5_3:554824-554843 Msa0789930:CDS 35.0%
AAGCATTATTCCACTAAGTG+GGG - chr5_3:554825-554844 Msa0789930:CDS 35.0%
! TTCTGGAAGAGACACAAATA+TGG - chr5_3:554905-554924 Msa0789930:CDS 35.0%
TATTTACAGGACTTGTACAG+AGG - chr5_3:555250-555269 Msa0789930:intron 35.0%
!! AGGTAGGTATGGAGTTTTAA+TGG + chr5_3:555303-555322 None:intergenic 35.0%
TGAAGGTCAATTAATGAGCT+GGG - chr5_3:555415-555434 Msa0789930:intron 35.0%
!!! CACACAGTTAATTGTTTTGG+TGG - chr5_3:555461-555480 Msa0789930:intron 35.0%
!!! TTGTTTTGGTGGGAAAATCA+AGG - chr5_3:555472-555491 Msa0789930:intron 35.0%
! ATGAGGTTTTGCCATAGTAA+GGG + chr5_3:555592-555611 None:intergenic 35.0%
! AATGAGGTTTTGCCATAGTA+AGG + chr5_3:555593-555612 None:intergenic 35.0%
TTACTATGGCAAAACCTCAT+TGG - chr5_3:555592-555611 Msa0789930:intron 35.0%
TTTCAAAGTGTGCTTTCCAT+GGG - chr5_3:555632-555651 Msa0789930:intron 35.0%
GGCACATTATATATGATCGT+GGG + chr5_3:555659-555678 None:intergenic 35.0%
AGGCACATTATATATGATCG+TGG + chr5_3:555660-555679 None:intergenic 35.0%
!!! AAGTTTTGAATTACATGCGG+TGG + chr5_3:555704-555723 None:intergenic 35.0%
CTTAGCTCAAAATACTTGCT+TGG - chr5_3:555721-555740 Msa0789930:intron 35.0%
CTGATAATAGAATCGTTGTG+TGG - chr5_3:555789-555808 Msa0789930:CDS 35.0%
!! AAATCCCATTGGTTTGAACA+CGG - chr5_3:555985-556004 Msa0789930:intron 35.0%
! ATTCTTTTCTCTAATGGGAG+AGG + chr5_3:556061-556080 None:intergenic 35.0%
! AGAATTTGCCAATTTGGTGA+AGG - chr5_3:556081-556100 Msa0789930:intron 35.0%
ACCTATTTCCTTCACCAAAT+TGG + chr5_3:556092-556111 None:intergenic 35.0%
! ATAGGTCGTCAACATTTTGT+TGG - chr5_3:556106-556125 Msa0789930:intron 35.0%
!! TGATGACAACGACTTTTTCT+TGG - chr5_3:556150-556169 Msa0789930:intron 35.0%
GACTTATTGTATCCTTTCTC+CGG - chr5_3:556227-556246 Msa0789930:intron 35.0%
TTCACAAAAAAACCGGAGAA+AGG + chr5_3:556242-556261 None:intergenic 35.0%
!! CTTGTACTGGTTACTTTGTT+TGG - chr5_3:556330-556349 Msa0789930:CDS 35.0%
!! ATGGGATCGTTTTTGAACAT+GGG + chr5_3:556394-556413 None:intergenic 35.0%
!! AATGGGATCGTTTTTGAACA+TGG + chr5_3:556395-556414 None:intergenic 35.0%
GCTACATTGAAGAGCTATAC+TGG - chr5_3:554145-554164 Msa0789930:three_prime_UTR 40.0%
TATTCAGGAACTCTTACTGG+AGG - chr5_3:554673-554692 Msa0789930:CDS 40.0%
TCATCTCAAAACTCCGCATT+GGG + chr5_3:554734-554753 None:intergenic 40.0%
TTCATCTCAAAACTCCGCAT+TGG + chr5_3:554735-554754 None:intergenic 40.0%
CCACTTAGTGGAATAATGCT+TGG + chr5_3:554826-554845 None:intergenic 40.0%
CCAAGCATTATTCCACTAAG+TGG - chr5_3:554823-554842 Msa0789930:CDS 40.0%
ATTATTCCACTAAGTGGGGT+TGG - chr5_3:554829-554848 Msa0789930:CDS 40.0%
ATACTCCTTAGAACATGCAG+CGG + chr5_3:555129-555148 None:intergenic 40.0%
AAAACTCCATACCTACCTGA+TGG - chr5_3:555305-555324 Msa0789930:intron 40.0%
TCAAGATCAAATCGACCATC+AGG + chr5_3:555323-555342 None:intergenic 40.0%
CTCGATCTGCATATTTACCA+AGG + chr5_3:555357-555376 None:intergenic 40.0%
GTAAATATGCAGATCGAGAG+TGG - chr5_3:555359-555378 Msa0789930:intron 40.0%
!! GGAGTTGAAGGTGTTATTGT+TGG - chr5_3:555380-555399 Msa0789930:intron 40.0%
!! GTTGAAGGTGTTATTGTTGG+TGG - chr5_3:555383-555402 Msa0789930:intron 40.0%
GTGAAGGTCAATTAATGAGC+TGG - chr5_3:555414-555433 Msa0789930:intron 40.0%
! GCGCACACAGTTAATTGTTT+TGG - chr5_3:555458-555477 Msa0789930:intron 40.0%
GGTGGGAAAATCAAGGTTAT+TGG - chr5_3:555479-555498 Msa0789930:intron 40.0%
ATACTGGAAGTAACTCGACA+AGG - chr5_3:555504-555523 Msa0789930:intron 40.0%
TACTGGAAGTAACTCGACAA+GGG - chr5_3:555505-555524 Msa0789930:intron 40.0%
TATGGCAAAACCTCATTGGA+TGG - chr5_3:555596-555615 Msa0789930:intron 40.0%
CAAAACCTCATTGGATGGTA+TGG - chr5_3:555601-555620 Msa0789930:intron 40.0%
CTTTCAAAGTGTGCTTTCCA+TGG - chr5_3:555631-555650 Msa0789930:intron 40.0%
TATAATGTGCCTTCACGAAC+TGG - chr5_3:555668-555687 Msa0789930:intron 40.0%
AATAGAATCGTTGTGTGGAG+CGG - chr5_3:555794-555813 Msa0789930:CDS 40.0%
ATCAATGCCATGATGCTAGA+TGG - chr5_3:555825-555844 Msa0789930:intron 40.0%
TCAATGCCATGATGCTAGAT+GGG - chr5_3:555826-555845 Msa0789930:intron 40.0%
ATGAGTTCTCGCATTAAACC+AGG + chr5_3:555896-555915 None:intergenic 40.0%
AATGCGAGAACTCATGTTTG+AGG - chr5_3:555901-555920 Msa0789930:intron 40.0%
ATGCGAGAACTCATGTTTGA+GGG - chr5_3:555902-555921 Msa0789930:intron 40.0%
TGGAAAAGCCAGTCAATCAA+AGG + chr5_3:555959-555978 None:intergenic 40.0%
GTGTTCAAACCAATGGGATT+TGG + chr5_3:555986-556005 None:intergenic 40.0%
ACAAATGGCAACCTGAAAAC+TGG + chr5_3:556037-556056 None:intergenic 40.0%
! TCTAATGGGAGAGGTACAAA+TGG + chr5_3:556052-556071 None:intergenic 40.0%
! GCCAATTTGGTGAAGGAAAT+AGG - chr5_3:556088-556107 Msa0789930:intron 40.0%
TGGCGGTTAATACAATATGC+AGG + chr5_3:556367-556386 None:intergenic 40.0%
! TTTTGAACATGGGTGTTTGG+CGG + chr5_3:556384-556403 None:intergenic 40.0%
! CGTTTTTGAACATGGGTGTT+TGG + chr5_3:556387-556406 None:intergenic 40.0%
AGAGGTAGACATCAAACCAA+TGG - chr5_3:556454-556473 Msa0789930:five_prime_UTR 40.0%
AACTTCAAATCGAGCTGCTG+TGG + chr5_3:554113-554132 None:intergenic 45.0%
! GCTCGATTTGAAGTTCACTG+AGG - chr5_3:554118-554137 Msa0789930:three_prime_UTR 45.0%
TATACTGGTGTCTGCTTCAG+AGG - chr5_3:554160-554179 Msa0789930:three_prime_UTR 45.0%
GTAAGATCGGAAGGATGAAC+CGG + chr5_3:554196-554215 None:intergenic 45.0%
GATTTCACAGCTGCTTGTGT+AGG + chr5_3:554699-554718 None:intergenic 45.0%
AATCGACCATCAGGTAGGTA+TGG + chr5_3:555314-555333 None:intergenic 45.0%
GATCAAATCGACCATCAGGT+AGG + chr5_3:555319-555338 None:intergenic 45.0%
TCTTGAAGCATACGATGCCT+TGG - chr5_3:555337-555356 Msa0789930:intron 45.0%
!! GTTATTGTTGGTGGCACAAC+TGG - chr5_3:555392-555411 Msa0789930:intron 45.0%
AGCAACCATACCATCCAATG+AGG + chr5_3:555609-555628 None:intergenic 45.0%
ATATATGATCGTGGGTCCCA+TGG + chr5_3:555651-555670 None:intergenic 45.0%
ATGTCTTGACCAGTTCGTGA+AGG + chr5_3:555680-555699 None:intergenic 45.0%
GCTCAAAATACTTGCTTGGC+TGG - chr5_3:555725-555744 Msa0789930:intron 45.0%
AGGAATGTGTGGGAAATGAC+AGG - chr5_3:555753-555772 Msa0789930:intron 45.0%
ATAGAATCGTTGTGTGGAGC+GGG - chr5_3:555795-555814 Msa0789930:CDS 45.0%
CAATGCCATGATGCTAGATG+GGG - chr5_3:555827-555846 Msa0789930:intron 45.0%
CATAACCCCATCTAGCATCA+TGG + chr5_3:555835-555854 None:intergenic 45.0%
CATGATGCTAGATGGGGTTA+TGG - chr5_3:555833-555852 Msa0789930:intron 45.0%
GTTGCAAGCAATCTGATTCC+TGG - chr5_3:555875-555894 Msa0789930:intron 45.0%
AGCTCTTGCCTTTGATTGAC+TGG - chr5_3:555948-555967 Msa0789930:intron 45.0%
TTCCACATGCCAAATCCCAT+TGG - chr5_3:555974-555993 Msa0789930:intron 45.0%
AACCAATGGGATTTGGCATG+TGG + chr5_3:555979-555998 None:intergenic 45.0%
AGAGCCGTGTTCAAACCAAT+GGG + chr5_3:555992-556011 None:intergenic 45.0%
AAGAGCCGTGTTCAAACCAA+TGG + chr5_3:555993-556012 None:intergenic 45.0%
TTGCTCAACTTGGAGTTGTC+AGG - chr5_3:556011-556030 Msa0789930:intron 45.0%
TGTTGGAACTGAAGACGTTC+AGG - chr5_3:556123-556142 Msa0789930:intron 45.0%
GGTTTCTCAGTAAACCGCGA+AGG - chr5_3:554041-554060 Msa0789930:three_prime_UTR 50.0%
! CTTCAGAGGATCCGGTTTTC+CGG - chr5_3:554174-554193 Msa0789930:three_prime_UTR 50.0%
GGAAGGATGAACCGGAAAAC+CGG + chr5_3:554188-554207 None:intergenic 50.0%
CCAATTTCCACCTCCCAATG+CGG - chr5_3:554718-554737 Msa0789930:CDS 50.0%
TCTCAAAACTCCGCATTGGG+AGG + chr5_3:554731-554750 None:intergenic 50.0%
CTAATGCCAACCCCACTTAG+TGG + chr5_3:554838-554857 None:intergenic 50.0%
CTGTACCGCTGCATGTTCTA+AGG - chr5_3:555121-555140 Msa0789930:CDS 50.0%
CAGATCGAGAGTGGAGTTGA+AGG - chr5_3:555368-555387 Msa0789930:intron 50.0%
GCAATTCATGCCACTGAGCA+AGG - chr5_3:555530-555549 Msa0789930:intron 50.0%
! TGCCACTGAGCAAGGTTTTG+CGG - chr5_3:555538-555557 Msa0789930:intron 50.0%
AACCGCAAAACCTTGCTCAG+TGG + chr5_3:555543-555562 None:intergenic 50.0%
! ACTGAGCAAGGTTTTGCGGT+TGG - chr5_3:555542-555561 Msa0789930:intron 50.0%
! GGTTTTGCGGTTGGAATGCA+TGG - chr5_3:555551-555570 Msa0789930:intron 50.0%
! TACTTGCTTGGCTGGTGTCA+AGG - chr5_3:555733-555752 Msa0789930:intron 50.0%
! GCTGGTGTCAAGGAATGTGT+GGG - chr5_3:555743-555762 Msa0789930:intron 50.0%
AGATGGGGTTATGGAGCTAC+TGG - chr5_3:555842-555861 Msa0789930:intron 50.0%
AACACGGCTCTTGCTCAACT+TGG - chr5_3:556001-556020 Msa0789930:intron 50.0%
! GAGTTGTCAGGCCAGTTTTC+AGG - chr5_3:556023-556042 Msa0789930:intron 50.0%
TCGAGCTGCTGTGGAGAAGA+CGG + chr5_3:554104-554123 None:intergenic 55.0%
GGTGTCTGCTTCAGAGGATC+CGG - chr5_3:554166-554185 Msa0789930:three_prime_UTR 55.0%
CCGCATTGGGAGGTGGAAAT+TGG + chr5_3:554721-554740 None:intergenic 55.0%
CAAAACTCCGCATTGGGAGG+TGG + chr5_3:554728-554747 None:intergenic 55.0%
AAGGTGGTCTCGCTTGCTTC+TGG - chr5_3:555155-555174 Msa0789930:CDS 55.0%
!! GTTGGTGGCACAACTGGTGA+AGG - chr5_3:555398-555417 Msa0789930:intron 55.0%
! GGCTGGTGTCAAGGAATGTG+TGG - chr5_3:555742-555761 Msa0789930:intron 55.0%
GTGGAGAAGACGGTGGTTGG+CGG + chr5_3:554094-554113 None:intergenic 60.0%
GCTGTGGAGAAGACGGTGGT+TGG + chr5_3:554097-554116 None:intergenic 60.0%
AGCTGCTGTGGAGAAGACGG+TGG + chr5_3:554101-554120 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 554010 556513 554010 ID=Msa0789930;Name=Msa0789930
chr5_3 mRNA 554010 556513 554010 ID=Msa0789930-mRNA-1;Parent=Msa0789930;Name=Msa0789930-mRNA-1;_AED=0.01;_eAED=0.01;_QI=132|1|1|1|1|1|3|327|366
chr5_3 exon 554010 555264 554010 ID=Msa0789930-mRNA-1:exon:134;Parent=Msa0789930-mRNA-1
chr5_3 exon 555763 555843 555763 ID=Msa0789930-mRNA-1:exon:133;Parent=Msa0789930-mRNA-1
chr5_3 exon 556290 556513 556290 ID=Msa0789930-mRNA-1:exon:132;Parent=Msa0789930-mRNA-1
chr5_3 five_prime_UTR 556382 556513 556382 ID=Msa0789930-mRNA-1:five_prime_utr;Parent=Msa0789930-mRNA-1
chr5_3 CDS 556290 556381 556290 ID=Msa0789930-mRNA-1:cds;Parent=Msa0789930-mRNA-1
chr5_3 CDS 555763 555843 555763 ID=Msa0789930-mRNA-1:cds;Parent=Msa0789930-mRNA-1
chr5_3 CDS 554337 555264 554337 ID=Msa0789930-mRNA-1:cds;Parent=Msa0789930-mRNA-1
chr5_3 three_prime_UTR 554010 554336 554010 ID=Msa0789930-mRNA-1:three_prime_utr;Parent=Msa0789930-mRNA-1
Gene Sequence

>Msa0789930

ATGGCTACATTGAAGAGCTATACTGGTGTCTGCTTCAGAGGATCCGGTTTTCCGGTTCATCCTTCCGATCTTACTACTAACAAAAACACCAGGAACTCTTACTGGAGGCCTACACAAGCAGCTGTGAAATCCAATTTCCACCTCCCAATGCGGAGTTTTGAGATGAAAAATAGGACTTGTACAGAGGACATTAAGTGTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGATTTGATCTTGAAGCATACGATGCCTTGGTAAATATGCAGATCGAGAGTGGAGTTGAAGGTGTTATTGTTGGTGGCACAACTGGTGAAGGTCAATTAATGAGCTGGGAAGAGCACATAATGCTTATTGCGCACACAGTTAATTGTTTTGGTGGGAAAATCAAGGTTATTGGAAATACTGGAAGTAACTCGACAAGGGAAGCAATTCATGCCACTGAGCAAGGTTTTGCGGTTGGAATGCATGGTGCCCTTCATATAAACCCTTACTATGGCAAAACCTCATTGGATGGTATGGTTGCTCACTTTCAAAGTGTGCTTTCCATGGGACCCACGATCATATATAATGTGCCTTCACGAACTGGTCAAGACATTCCACCGCATGTAATTCAAAACTTAGCTCAAAATACTTGCTTGGCTGGTGTCAAGGAATGTGTGGGAAATGACAGGATCAAAGAGTATACTGATAATAGAATCGTTGTGTGGAGCGGGAACGATGATCAATGCCATGATGCTAGATGGGGTTATGGAGCTACTGGAGTGATATCTGTTGCAAGCAATCTGATTCCTGGTTTAATGCGAGAACTCATGTTTGAGGGCAAAAATCCTACATTGAATTCTAAGCTCTTGCCTTTGATTGACTGGCTTTTCCACATGCCAAATCCCATTGGTTTGAACACGGCTCTTGCTCAACTTGGAGTTGTCAGGCCAGTTTTCAGGTTGCCATTTGTACCTCTCCCATTAGAGAAAAGAATAGAATTTGCCAATTTGGTGAAGGAAATAGGTCGTCAACATTTTGTTGGAACTGAAGACGTTCAGGTTCTTGATGACAACGACTTTTTCTTGGTTAGTCGATATTAA
Protein sequence

>Msa0789930

MATLKSYTGVCFRGSGFPVHPSDLTTNKNTRNSYWRPTQAAVKSNFHLPMRSFEMKNRTCTEDIKCLRLITAIKTPYLPDGRFDLEAYDALVNMQIESGVEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHGALHINPYYGKTSLDGMVAHFQSVLSMGPTIIYNVPSRTGQDIPPHVIQNLAQNTCLAGVKECVGNDRIKEYTDNRIVVWSGNDDQCHDARWGYGATGVISVASNLIPGLMRELMFEGKNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPLEKRIEFANLVKEIGRQHFVGTEDVQVLDDNDFFLVSRY*