Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129130 | XP_013469186.1 | 98.907 | 366 | 4 | 0 | 1 | 366 | 1 | 366 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129130 | sp|Q42800|DAPA_SOYBN | 89.329 | 328 | 35 | 0 | 39 | 366 | 5 | 332 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129130 | A0A072VMI5 | 98.907 | 366 | 4 | 0 | 1 | 366 | 1 | 366 | 0.0 | 756 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037480 | Msa0129130 | 0.972758 | 2.723487e-135 | -8.615850e-47 |
| Msa0087910 | Msa0129130 | 0.805806 | 1.117618e-49 | -8.615850e-47 |
| Msa0129130 | Msa0174940 | 0.834582 | 2.758223e-56 | -8.615850e-47 |
| Msa0129130 | Msa0184650 | 0.817016 | 4.103082e-52 | -8.615850e-47 |
| Msa0129130 | Msa0223950 | 0.800081 | 1.703352e-48 | -8.615850e-47 |
| Msa0129130 | Msa0342850 | 0.801550 | 8.540880e-49 | -8.615850e-47 |
| Msa0129130 | Msa0426250 | 0.805812 | 1.114218e-49 | -8.615850e-47 |
| Msa0129130 | Msa0789930 | 0.857123 | 2.021724e-62 | -8.615850e-47 |
| Msa0129130 | Msa1128120 | 0.825671 | 4.127906e-54 | -8.615850e-47 |
| Msa0129130 | Msa1341780 | 0.811278 | 7.584083e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129130 | MtrunA17_Chr1g0195781 | 98.907 | 366 | 4 | 0 | 1 | 366 | 1 | 366 | 0.0 | 756 |
| Msa0129130 | MtrunA17_Chr7g0245941 | 92.350 | 366 | 28 | 0 | 1 | 366 | 1 | 366 | 0.0 | 721 |
| Msa0129130 | MtrunA17_Chr8g0351631 | 64.481 | 366 | 122 | 1 | 1 | 366 | 83 | 440 | 1.33e-178 | 503 |
| Msa0129130 | MtrunA17_Chr8g0351611 | 64.499 | 369 | 121 | 4 | 1 | 366 | 1 | 362 | 3.04e-170 | 479 |
| Msa0129130 | MtrunA17_Chr8g0351581 | 69.453 | 311 | 94 | 1 | 56 | 366 | 21 | 330 | 4.33e-163 | 459 |
| Msa0129130 | MtrunA17_Chr8g0351641 | 63.462 | 312 | 109 | 1 | 55 | 366 | 1 | 307 | 3.76e-148 | 421 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129130 | AT2G45440.1 | 75.410 | 366 | 89 | 1 | 1 | 366 | 1 | 365 | 0.0 | 581 |
| Msa0129130 | AT3G60880.2 | 74.590 | 366 | 92 | 1 | 1 | 366 | 1 | 365 | 0.0 | 568 |
| Msa0129130 | AT3G60880.1 | 74.317 | 366 | 92 | 1 | 1 | 366 | 1 | 364 | 0.0 | 566 |
Find 111 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAATAGAATTTGCCAATT+TGG | 0.151527 | 1_3:+58950747 | Msa0129130:CDS |
| CCGCATTGGGAGGTGGAAAT+TGG | 0.197311 | 1_3:-58949390 | None:intergenic |
| ACCTATTTCCTTCACCAAAT+TGG | 0.206485 | 1_3:-58950761 | None:intergenic |
| GGTGGGAAAATCAAGGTTAT+TGG | 0.223073 | 1_3:+58950151 | Msa0129130:CDS |
| TGGTTAGTCGATATTAATTT+AGG | 0.225709 | 1_3:+58950842 | Msa0129130:exon |
| CTTGTACTGGTTACTTTGTT+TGG | 0.243493 | 1_3:+58951001 | Msa0129130:three_prime_UTR |
| GATTATTCAGGAACTCTTAC+TGG | 0.297793 | 1_3:+58949342 | Msa0129130:intron |
| ATCAAGGTTATTGGAAATAC+TGG | 0.303578 | 1_3:+58950160 | Msa0129130:CDS |
| GCCAATTTGGTGAAGGAAAT+AGG | 0.310672 | 1_3:+58950760 | Msa0129130:CDS |
| ATAGAAATTATGAAATGAAT+TGG | 0.315357 | 1_3:-58948646 | None:intergenic |
| GCGCACACAGTTAATTGTTT+TGG | 0.323823 | 1_3:+58950130 | Msa0129130:CDS |
| GTTGCAAGCAATCTGATTCC+TGG | 0.342044 | 1_3:+58950547 | Msa0129130:CDS |
| TTGTTAGTTATTATTGAGTT+AGG | 0.356978 | 1_3:+58950865 | Msa0129130:three_prime_UTR |
| TAAGATCTTGTTTCTTGTAC+TGG | 0.369891 | 1_3:+58950988 | Msa0129130:three_prime_UTR |
| GTGTTCAAACCAATGGGATT+TGG | 0.372649 | 1_3:-58950655 | None:intergenic |
| TGTTGGAACTGAAGACGTTC+AGG | 0.373512 | 1_3:+58950795 | Msa0129130:CDS |
| AGCTCTTGCCTTTGATTGAC+TGG | 0.378010 | 1_3:+58950620 | Msa0129130:CDS |
| GCTACATTGAAGAGCTATAC+TGG | 0.379000 | 1_3:+58948778 | Msa0129130:CDS |
| ATCAATGCCATGATGCTAGA+TGG | 0.385109 | 1_3:+58950497 | Msa0129130:CDS |
| TTGCTCAACTTGGAGTTGTC+AGG | 0.401383 | 1_3:+58950683 | Msa0129130:CDS |
| ACAAATGGCAACCTGAAAAC+TGG | 0.401923 | 1_3:-58950706 | None:intergenic |
| TTTCATAATTTCTATCAGTT+AGG | 0.402264 | 1_3:+58948654 | Msa0129130:five_prime_UTR |
| CTTTCAAAGTGTGCTTTCCA+TGG | 0.406034 | 1_3:+58950303 | Msa0129130:CDS |
| AACACGGCTCTTGCTCAACT+TGG | 0.407658 | 1_3:+58950673 | Msa0129130:CDS |
| GGAAGGATGAACCGGAAAAC+CGG | 0.409763 | 1_3:-58948818 | None:intergenic |
| TCATCTCAAAACTCCGCATT+GGG | 0.420171 | 1_3:-58949403 | None:intergenic |
| GACTTATTGTATCCTTTCTC+CGG | 0.423830 | 1_3:+58950898 | Msa0129130:three_prime_UTR |
| CTTCATATAAACCCTTACTA+TGG | 0.428403 | 1_3:+58950250 | Msa0129130:CDS |
| GGAGTTGAAGGTGTTATTGT+TGG | 0.429517 | 1_3:+58950052 | Msa0129130:CDS |
| CATAGTAAGGGTTTATATGA+AGG | 0.438848 | 1_3:-58950249 | None:intergenic |
| TTACTATGGCAAAACCTCAT+TGG | 0.439136 | 1_3:+58950264 | Msa0129130:CDS |
| TATAATGTGCCTTCACGAAC+TGG | 0.441534 | 1_3:+58950340 | Msa0129130:CDS |
| GTTATTGTTGGTGGCACAAC+TGG | 0.447799 | 1_3:+58950064 | Msa0129130:CDS |
| AATTATGTATGTTGTTGTGC+TGG | 0.460636 | 1_3:+58950946 | Msa0129130:three_prime_UTR |
| CTTAGCTCAAAATACTTGCT+TGG | 0.461095 | 1_3:+58950393 | Msa0129130:CDS |
| GCTCAAAATACTTGCTTGGC+TGG | 0.463469 | 1_3:+58950397 | Msa0129130:CDS |
| TTCATCTCAAAACTCCGCAT+TGG | 0.466411 | 1_3:-58949404 | None:intergenic |
| GTGAAGGTCAATTAATGAGC+TGG | 0.470889 | 1_3:+58950086 | Msa0129130:CDS |
| ATGCGAGAACTCATGTTTGA+GGG | 0.476788 | 1_3:+58950574 | Msa0129130:CDS |
| AGATGGGGTTATGGAGCTAC+TGG | 0.478069 | 1_3:+58950514 | Msa0129130:CDS |
| TCAAGATCAAATCGACCATC+AGG | 0.480309 | 1_3:-58949992 | None:intergenic |
| GTTGAAGGTGTTATTGTTGG+TGG | 0.483414 | 1_3:+58950055 | Msa0129130:CDS |
| TAGAAATTATGAAATGAATT+GGG | 0.484201 | 1_3:-58948645 | None:intergenic |
| GGTGTCTGCTTCAGAGGATC+CGG | 0.484695 | 1_3:+58948799 | Msa0129130:CDS |
| CAAAACTCCGCATTGGGAGG+TGG | 0.487292 | 1_3:-58949397 | None:intergenic |
| CATGATGCTAGATGGGGTTA+TGG | 0.493610 | 1_3:+58950505 | Msa0129130:CDS |
| TCATTGTAATAATGTTCCAT+TGG | 0.499103 | 1_3:-58951141 | None:intergenic |
| TACTTGCTTGGCTGGTGTCA+AGG | 0.500800 | 1_3:+58950405 | Msa0129130:CDS |
| CAGATCGAGAGTGGAGTTGA+AGG | 0.501168 | 1_3:+58950040 | Msa0129130:CDS |
| ATAGAATCGTTGTGTGGAGC+GGG | 0.501345 | 1_3:+58950467 | Msa0129130:CDS |
| AATGCGAGAACTCATGTTTG+AGG | 0.508177 | 1_3:+58950573 | Msa0129130:CDS |
| GTAAGATCGGAAGGATGAAC+CGG | 0.510311 | 1_3:-58948826 | None:intergenic |
| AACCAATGGGATTTGGCATG+TGG | 0.510972 | 1_3:-58950648 | None:intergenic |
| TATACTGGTGTCTGCTTCAG+AGG | 0.514396 | 1_3:+58948793 | Msa0129130:CDS |
| CACTTCTAAAATTGCATGAG+TGG | 0.515874 | 1_3:-58951081 | None:intergenic |
| ATTTCAAGTTCACTGAGGTA+TGG | 0.518729 | 1_3:+58948756 | Msa0129130:exon |
| GCAATTCATGCCACTGAGCA+AGG | 0.519046 | 1_3:+58950202 | Msa0129130:CDS |
| TTTCAAAGTGTGCTTTCCAT+GGG | 0.520623 | 1_3:+58950304 | Msa0129130:CDS |
| GATTTCACAGCTGCTTGTGT+AGG | 0.522599 | 1_3:-58949368 | None:intergenic |
| AAGAGCTTAGAATTCAATGT+AGG | 0.522936 | 1_3:-58950604 | None:intergenic |
| AAGAGCCGTGTTCAAACCAA+TGG | 0.526094 | 1_3:-58950662 | None:intergenic |
| TCTAATGGGAGAGGTACAAA+TGG | 0.526400 | 1_3:-58950721 | None:intergenic |
| AATCGACCATCAGGTAGGTA+TGG | 0.528759 | 1_3:-58949983 | None:intergenic |
| AGAATTTGCCAATTTGGTGA+AGG | 0.533742 | 1_3:+58950753 | Msa0129130:CDS |
| CAAAACCTCATTGGATGGTA+TGG | 0.535451 | 1_3:+58950273 | Msa0129130:CDS |
| GTGGAGAAGACGGTGGTTGG+CGG | 0.540986 | 1_3:-58948724 | None:intergenic |
| AGGAATGTGTGGGAAATGAC+AGG | 0.543586 | 1_3:+58950425 | Msa0129130:CDS |
| TCTTGAAGCATACGATGCCT+TGG | 0.545550 | 1_3:+58950009 | Msa0129130:CDS |
| TTCCACATGCCAAATCCCAT+TGG | 0.545798 | 1_3:+58950646 | Msa0129130:CDS |
| ACTTCTAAAATTGCATGAGT+GGG | 0.548290 | 1_3:-58951080 | None:intergenic |
| TGGCGGTTAATACAATATGC+AGG | 0.549833 | 1_3:-58951035 | None:intergenic |
| GGCTGGTGTCAAGGAATGTG+TGG | 0.556357 | 1_3:+58950414 | Msa0129130:CDS |
| AACTTGAAATCGAGCTGCTG+TGG | 0.560585 | 1_3:-58948743 | None:intergenic |
| TCGAGCTGCTGTGGAGAAGA+CGG | 0.566913 | 1_3:-58948734 | None:intergenic |
| CATAACCCCATCTAGCATCA+TGG | 0.567567 | 1_3:-58950504 | None:intergenic |
| TTGTTAGTAGTAAGATCGGA+AGG | 0.567613 | 1_3:-58948835 | None:intergenic |
| TCAATGCCATGATGCTAGAT+GGG | 0.567969 | 1_3:+58950498 | Msa0129130:CDS |
| TGGAAAAGCCAGTCAATCAA+AGG | 0.572095 | 1_3:-58950628 | None:intergenic |
| TATGGCAAAACCTCATTGGA+TGG | 0.575275 | 1_3:+58950268 | Msa0129130:CDS |
| ATATATGATCGTGGGTCCCA+TGG | 0.576230 | 1_3:-58950320 | None:intergenic |
| ATAGTAAGGGTTTATATGAA+GGG | 0.577466 | 1_3:-58950248 | None:intergenic |
| AGAGCCGTGTTCAAACCAAT+GGG | 0.577523 | 1_3:-58950661 | None:intergenic |
| GTAAATATGCAGATCGAGAG+TGG | 0.578320 | 1_3:+58950031 | Msa0129130:CDS |
| TGAAGGTCAATTAATGAGCT+GGG | 0.584644 | 1_3:+58950087 | Msa0129130:CDS |
| TATTTACAGGACTTGTACAG+AGG | 0.599967 | 1_3:+58949922 | Msa0129130:intron |
| ATGAGTTCTCGCATTAAACC+AGG | 0.602598 | 1_3:-58950565 | None:intergenic |
| GCTGTGGAGAAGACGGTGGT+TGG | 0.609598 | 1_3:-58948727 | None:intergenic |
| AATAGAATCGTTGTGTGGAG+CGG | 0.613867 | 1_3:+58950466 | Msa0129130:CDS |
| AGAGGTAGACATCAAACCAA+TGG | 0.618147 | 1_3:+58951125 | Msa0129130:three_prime_UTR |
| AAATCCCATTGGTTTGAACA+CGG | 0.620889 | 1_3:+58950657 | Msa0129130:CDS |
| TCTCAAAACTCCGCATTGGG+AGG | 0.623035 | 1_3:-58949400 | None:intergenic |
| GGCACATTATATATGATCGT+GGG | 0.623516 | 1_3:-58950328 | None:intergenic |
| AGGCACATTATATATGATCG+TGG | 0.625176 | 1_3:-58950329 | None:intergenic |
| AAGGATACAATAAGTCTACA+AGG | 0.625433 | 1_3:-58950891 | None:intergenic |
| AAAACTCCATACCTACCTGA+TGG | 0.627623 | 1_3:+58949977 | Msa0129130:CDS |
| ATACTGGAAGTAACTCGACA+AGG | 0.635535 | 1_3:+58950176 | Msa0129130:CDS |
| TACTGGAAGTAACTCGACAA+GGG | 0.637824 | 1_3:+58950177 | Msa0129130:CDS |
| CTCGATCTGCATATTTACCA+AGG | 0.639513 | 1_3:-58950026 | None:intergenic |
| GGTTTCTCAGTAAACCGCGA+AGG | 0.644815 | 1_3:+58948675 | Msa0129130:five_prime_UTR |
| ATGTCTTGACCAGTTCGTGA+AGG | 0.650374 | 1_3:-58950349 | None:intergenic |
| TATTCAGGAACTCTTACTGG+AGG | 0.652852 | 1_3:+58949345 | Msa0129130:intron |
| GTTGGTGGCACAACTGGTGA+AGG | 0.663404 | 1_3:+58950070 | Msa0129130:CDS |
| GCTGGTGTCAAGGAATGTGT+GGG | 0.663954 | 1_3:+58950415 | Msa0129130:CDS |
| CTGATAATAGAATCGTTGTG+TGG | 0.669847 | 1_3:+58950461 | Msa0129130:CDS |
| AACCGCAAAACCTTGCTCAG+TGG | 0.673625 | 1_3:-58950212 | None:intergenic |
| GATCAAATCGACCATCAGGT+AGG | 0.678861 | 1_3:-58949988 | None:intergenic |
| AGCAACCATACCATCCAATG+AGG | 0.685283 | 1_3:-58950278 | None:intergenic |
| CCAATTTCCACCTCCCAATG+CGG | 0.691962 | 1_3:+58949390 | Msa0129130:CDS |
| CAATGCCATGATGCTAGATG+GGG | 0.711874 | 1_3:+58950499 | Msa0129130:CDS |
| GCTCGATTTCAAGTTCACTG+AGG | 0.769035 | 1_3:+58948751 | Msa0129130:five_prime_UTR |
| AGCTGCTGTGGAGAAGACGG+TGG | 0.771661 | 1_3:-58948731 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAAATTATGAAATGAATT+GGG | - | chr1_3:58948648-58948667 | None:intergenic | 15.0% |
| !! | ATAGAAATTATGAAATGAAT+TGG | - | chr1_3:58948649-58948668 | None:intergenic | 15.0% |
| !! | AGATTTCAAAATAAAGAAAA+CGG | - | chr1_3:58948881-58948900 | None:intergenic | 15.0% |
| !! | AATAAAAAGATGAAAACAAA+TGG | - | chr1_3:58949557-58949576 | None:intergenic | 15.0% |
| !! | TTTCATAATTTCTATCAGTT+AGG | + | chr1_3:58948654-58948673 | Msa0129130:five_prime_UTR | 20.0% |
| !! | AATGAATTCGATGAAATAAA+CGG | + | chr1_3:58949046-58949065 | Msa0129130:intron | 20.0% |
| !!! | TATGATTTTAATGATGATGA+AGG | + | chr1_3:58949093-58949112 | Msa0129130:intron | 20.0% |
| !!! | ATGATTTTAATGATGATGAA+GGG | + | chr1_3:58949094-58949113 | Msa0129130:intron | 20.0% |
| !!! | GTTTTCATCTTTTTATTTTC+TGG | + | chr1_3:58949560-58949579 | Msa0129130:intron | 20.0% |
| !! | TATTGTGATTTATGATGAAA+CGG | + | chr1_3:58949613-58949632 | Msa0129130:intron | 20.0% |
| !!! | TTCTAAGGAGTATATTTAAA+AGG | + | chr1_3:58949808-58949827 | Msa0129130:intron | 20.0% |
| !! | AAGCTATATATTGTATTTAC+AGG | + | chr1_3:58949909-58949928 | Msa0129130:intron | 20.0% |
| !!! | ATTCTATTCTTTTCTCTAAT+GGG | - | chr1_3:58950738-58950757 | None:intergenic | 20.0% |
| !!! | AATTCTATTCTTTTCTCTAA+TGG | - | chr1_3:58950739-58950758 | None:intergenic | 20.0% |
| !! | TTGTTAGTTATTATTGAGTT+AGG | + | chr1_3:58950865-58950884 | Msa0129130:three_prime_UTR | 20.0% |
| !! | GTTTTTGTTAGTAGTAAGAT+CGG | - | chr1_3:58948842-58948861 | None:intergenic | 25.0% |
| !! | TTGAGAGTATAATTTAGCTA+AGG | + | chr1_3:58949145-58949164 | Msa0129130:intron | 25.0% |
| !!! | TTTTGAGATGAAAAATAGGT+TGG | + | chr1_3:58949415-58949434 | Msa0129130:intron | 25.0% |
| ! | AGTATCAAAACTAATGAATG+TGG | - | chr1_3:58949462-58949481 | None:intergenic | 25.0% |
| ! | ATTGTGATTTATGATGAAAC+GGG | + | chr1_3:58949614-58949633 | Msa0129130:intron | 25.0% |
| ! | GAAAAACAAATCCAAATTAG+TGG | - | chr1_3:58949669-58949688 | None:intergenic | 25.0% |
| ! | AATCTCAAATTGAATGATAG+AGG | - | chr1_3:58949691-58949710 | None:intergenic | 25.0% |
| !!! | AGATTTTGATTTGACATACA+AGG | + | chr1_3:58949706-58949725 | Msa0129130:intron | 25.0% |
| !! | TAAGGAGTATATTTAAAAGG+TGG | + | chr1_3:58949811-58949830 | Msa0129130:intron | 25.0% |
| !!! | TGTTGCTTTTGTTTTAATCA+TGG | + | chr1_3:58949864-58949883 | Msa0129130:intron | 25.0% |
| !! | AATCATGGAATCACAAATTT+TGG | + | chr1_3:58949879-58949898 | Msa0129130:intron | 25.0% |
| ! | ATAGTAAGGGTTTATATGAA+GGG | - | chr1_3:58950251-58950270 | None:intergenic | 25.0% |
| ! | AAGAATAGAATTTGCCAATT+TGG | + | chr1_3:58950747-58950766 | Msa0129130:CDS | 25.0% |
| !! | TGGTTAGTCGATATTAATTT+AGG | + | chr1_3:58950842-58950861 | Msa0129130:exon | 25.0% |
| ! | TTGAAGTTTCACAAAAAAAC+CGG | - | chr1_3:58950920-58950939 | None:intergenic | 25.0% |
| ! | TCATTGTAATAATGTTCCAT+TGG | - | chr1_3:58951144-58951163 | None:intergenic | 25.0% |
| TTACTACTAACAAAAACACC+AGG | + | chr1_3:58948845-58948864 | Msa0129130:CDS | 30.0% | |
| !! | TTGATTTGTCTATATGCATG+TGG | + | chr1_3:58948966-58948985 | Msa0129130:intron | 30.0% |
| !! | ATTGCAGCTGAATTTGATTT+TGG | + | chr1_3:58948989-58949008 | Msa0129130:intron | 30.0% |
| ! | AGATTTTGTTAGCATGTATG+AGG | + | chr1_3:58949233-58949252 | Msa0129130:intron | 30.0% |
| AGCACAATCAATATCAATCA+CGG | - | chr1_3:58949260-58949279 | None:intergenic | 30.0% | |
| GTTTGTCTGTATGATTATTC+AGG | + | chr1_3:58949330-58949349 | Msa0129130:intron | 30.0% | |
| !!! | GGAGTTTTGAGATGAAAAAT+AGG | + | chr1_3:58949411-58949430 | Msa0129130:CDS | 30.0% |
| CTTGCTTATTTCCACTAATT+TGG | + | chr1_3:58949655-58949674 | Msa0129130:intron | 30.0% | |
| ACAAAAGCAACAACACAAAT+AGG | - | chr1_3:58949856-58949875 | None:intergenic | 30.0% | |
| !!! | ACACAGTTAATTGTTTTGGT+GGG | + | chr1_3:58950134-58950153 | Msa0129130:CDS | 30.0% |
| ATCAAGGTTATTGGAAATAC+TGG | + | chr1_3:58950160-58950179 | Msa0129130:CDS | 30.0% | |
| CATAGTAAGGGTTTATATGA+AGG | - | chr1_3:58950252-58950271 | None:intergenic | 30.0% | |
| CTTCATATAAACCCTTACTA+TGG | + | chr1_3:58950250-58950269 | Msa0129130:CDS | 30.0% | |
| !!! | GCTAAGTTTTGAATTACATG+CGG | - | chr1_3:58950379-58950398 | None:intergenic | 30.0% |
| AAGAGCTTAGAATTCAATGT+AGG | - | chr1_3:58950607-58950626 | None:intergenic | 30.0% | |
| AAGGATACAATAAGTCTACA+AGG | - | chr1_3:58950894-58950913 | None:intergenic | 30.0% | |
| AATTATGTATGTTGTTGTGC+TGG | + | chr1_3:58950946-58950965 | Msa0129130:three_prime_UTR | 30.0% | |
| ! | TAAGATCTTGTTTCTTGTAC+TGG | + | chr1_3:58950988-58951007 | Msa0129130:three_prime_UTR | 30.0% |
| !! | ACTTCTAAAATTGCATGAGT+GGG | - | chr1_3:58951083-58951102 | None:intergenic | 30.0% |
| ! | TTTTTGCTTAAAATGCTGAG+AGG | + | chr1_3:58951107-58951126 | Msa0129130:three_prime_UTR | 30.0% |
| CTAACTGAAAAAAACCTTCG+CGG | - | chr1_3:58948692-58948711 | None:intergenic | 35.0% | |
| !! | ATTTCAAGTTCACTGAGGTA+TGG | + | chr1_3:58948756-58948775 | Msa0129130:exon | 35.0% |
| TTGTTAGTAGTAAGATCGGA+AGG | - | chr1_3:58948838-58948857 | None:intergenic | 35.0% | |
| GAAAACGGAAAATTTGAACC+TGG | - | chr1_3:58948866-58948885 | None:intergenic | 35.0% | |
| ACCATTCCTGTATCTTTGTA+TGG | + | chr1_3:58949180-58949199 | Msa0129130:intron | 35.0% | |
| TCCATACAAAGATACAGGAA+TGG | - | chr1_3:58949184-58949203 | None:intergenic | 35.0% | |
| TCTTGTCCATACAAAGATAC+AGG | - | chr1_3:58949189-58949208 | None:intergenic | 35.0% | |
| GCACAATCAATATCAATCAC+GGG | - | chr1_3:58949259-58949278 | None:intergenic | 35.0% | |
| GATTATTCAGGAACTCTTAC+TGG | + | chr1_3:58949342-58949361 | Msa0129130:intron | 35.0% | |
| CAAGCATTATTCCACTAAGT+GGG | + | chr1_3:58949496-58949515 | Msa0129130:intron | 35.0% | |
| AAGCATTATTCCACTAAGTG+GGG | + | chr1_3:58949497-58949516 | Msa0129130:intron | 35.0% | |
| ! | TTCTGGAAGAGACACAAATA+TGG | + | chr1_3:58949577-58949596 | Msa0129130:intron | 35.0% |
| TATTTACAGGACTTGTACAG+AGG | + | chr1_3:58949922-58949941 | Msa0129130:intron | 35.0% | |
| !! | AGGTAGGTATGGAGTTTTAA+TGG | - | chr1_3:58949975-58949994 | None:intergenic | 35.0% |
| TGAAGGTCAATTAATGAGCT+GGG | + | chr1_3:58950087-58950106 | Msa0129130:CDS | 35.0% | |
| !!! | CACACAGTTAATTGTTTTGG+TGG | + | chr1_3:58950133-58950152 | Msa0129130:CDS | 35.0% |
| !!! | TTGTTTTGGTGGGAAAATCA+AGG | + | chr1_3:58950144-58950163 | Msa0129130:CDS | 35.0% |
| ! | ATGAGGTTTTGCCATAGTAA+GGG | - | chr1_3:58950264-58950283 | None:intergenic | 35.0% |
| ! | AATGAGGTTTTGCCATAGTA+AGG | - | chr1_3:58950265-58950284 | None:intergenic | 35.0% |
| TTACTATGGCAAAACCTCAT+TGG | + | chr1_3:58950264-58950283 | Msa0129130:CDS | 35.0% | |
| TTTCAAAGTGTGCTTTCCAT+GGG | + | chr1_3:58950304-58950323 | Msa0129130:CDS | 35.0% | |
| GGCACATTATATATGATCGT+GGG | - | chr1_3:58950331-58950350 | None:intergenic | 35.0% | |
| AGGCACATTATATATGATCG+TGG | - | chr1_3:58950332-58950351 | None:intergenic | 35.0% | |
| !!! | AAGTTTTGAATTACATGCGG+TGG | - | chr1_3:58950376-58950395 | None:intergenic | 35.0% |
| CTTAGCTCAAAATACTTGCT+TGG | + | chr1_3:58950393-58950412 | Msa0129130:CDS | 35.0% | |
| CTGATAATAGAATCGTTGTG+TGG | + | chr1_3:58950461-58950480 | Msa0129130:CDS | 35.0% | |
| !! | AAATCCCATTGGTTTGAACA+CGG | + | chr1_3:58950657-58950676 | Msa0129130:CDS | 35.0% |
| ! | ATTCTTTTCTCTAATGGGAG+AGG | - | chr1_3:58950733-58950752 | None:intergenic | 35.0% |
| ! | AGAATTTGCCAATTTGGTGA+AGG | + | chr1_3:58950753-58950772 | Msa0129130:CDS | 35.0% |
| ACCTATTTCCTTCACCAAAT+TGG | - | chr1_3:58950764-58950783 | None:intergenic | 35.0% | |
| ! | ATAGGTCGTCAACATTTTGT+TGG | + | chr1_3:58950778-58950797 | Msa0129130:CDS | 35.0% |
| !! | TGATGACAACGACTTTTTCT+TGG | + | chr1_3:58950822-58950841 | Msa0129130:CDS | 35.0% |
| GACTTATTGTATCCTTTCTC+CGG | + | chr1_3:58950898-58950917 | Msa0129130:three_prime_UTR | 35.0% | |
| TTCACAAAAAAACCGGAGAA+AGG | - | chr1_3:58950913-58950932 | None:intergenic | 35.0% | |
| !! | CTTGTACTGGTTACTTTGTT+TGG | + | chr1_3:58951001-58951020 | Msa0129130:three_prime_UTR | 35.0% |
| !! | CACTTCTAAAATTGCATGAG+TGG | - | chr1_3:58951084-58951103 | None:intergenic | 35.0% |
| !!! | CGCGAAGGTTTTTTTCAGTT+AGG | + | chr1_3:58948690-58948709 | Msa0129130:five_prime_UTR | 40.0% |
| GCTACATTGAAGAGCTATAC+TGG | + | chr1_3:58948778-58948797 | Msa0129130:CDS | 40.0% | |
| TATTCAGGAACTCTTACTGG+AGG | + | chr1_3:58949345-58949364 | Msa0129130:intron | 40.0% | |
| TCATCTCAAAACTCCGCATT+GGG | - | chr1_3:58949406-58949425 | None:intergenic | 40.0% | |
| TTCATCTCAAAACTCCGCAT+TGG | - | chr1_3:58949407-58949426 | None:intergenic | 40.0% | |
| CCACTTAGTGGAATAATGCT+TGG | - | chr1_3:58949498-58949517 | None:intergenic | 40.0% | |
| CCAAGCATTATTCCACTAAG+TGG | + | chr1_3:58949495-58949514 | Msa0129130:intron | 40.0% | |
| ATTATTCCACTAAGTGGGGT+TGG | + | chr1_3:58949501-58949520 | Msa0129130:intron | 40.0% | |
| ATACTCCTTAGAACATGCAG+CGG | - | chr1_3:58949801-58949820 | None:intergenic | 40.0% | |
| AAAACTCCATACCTACCTGA+TGG | + | chr1_3:58949977-58949996 | Msa0129130:CDS | 40.0% | |
| TCAAGATCAAATCGACCATC+AGG | - | chr1_3:58949995-58950014 | None:intergenic | 40.0% | |
| CTCGATCTGCATATTTACCA+AGG | - | chr1_3:58950029-58950048 | None:intergenic | 40.0% | |
| GTAAATATGCAGATCGAGAG+TGG | + | chr1_3:58950031-58950050 | Msa0129130:CDS | 40.0% | |
| !! | GGAGTTGAAGGTGTTATTGT+TGG | + | chr1_3:58950052-58950071 | Msa0129130:CDS | 40.0% |
| !! | GTTGAAGGTGTTATTGTTGG+TGG | + | chr1_3:58950055-58950074 | Msa0129130:CDS | 40.0% |
| GTGAAGGTCAATTAATGAGC+TGG | + | chr1_3:58950086-58950105 | Msa0129130:CDS | 40.0% | |
| ! | GCGCACACAGTTAATTGTTT+TGG | + | chr1_3:58950130-58950149 | Msa0129130:CDS | 40.0% |
| GGTGGGAAAATCAAGGTTAT+TGG | + | chr1_3:58950151-58950170 | Msa0129130:CDS | 40.0% | |
| ATACTGGAAGTAACTCGACA+AGG | + | chr1_3:58950176-58950195 | Msa0129130:CDS | 40.0% | |
| TACTGGAAGTAACTCGACAA+GGG | + | chr1_3:58950177-58950196 | Msa0129130:CDS | 40.0% | |
| TATGGCAAAACCTCATTGGA+TGG | + | chr1_3:58950268-58950287 | Msa0129130:CDS | 40.0% | |
| CAAAACCTCATTGGATGGTA+TGG | + | chr1_3:58950273-58950292 | Msa0129130:CDS | 40.0% | |
| CTTTCAAAGTGTGCTTTCCA+TGG | + | chr1_3:58950303-58950322 | Msa0129130:CDS | 40.0% | |
| TATAATGTGCCTTCACGAAC+TGG | + | chr1_3:58950340-58950359 | Msa0129130:CDS | 40.0% | |
| AATAGAATCGTTGTGTGGAG+CGG | + | chr1_3:58950466-58950485 | Msa0129130:CDS | 40.0% | |
| ATCAATGCCATGATGCTAGA+TGG | + | chr1_3:58950497-58950516 | Msa0129130:CDS | 40.0% | |
| TCAATGCCATGATGCTAGAT+GGG | + | chr1_3:58950498-58950517 | Msa0129130:CDS | 40.0% | |
| ATGAGTTCTCGCATTAAACC+AGG | - | chr1_3:58950568-58950587 | None:intergenic | 40.0% | |
| AATGCGAGAACTCATGTTTG+AGG | + | chr1_3:58950573-58950592 | Msa0129130:CDS | 40.0% | |
| ATGCGAGAACTCATGTTTGA+GGG | + | chr1_3:58950574-58950593 | Msa0129130:CDS | 40.0% | |
| TGGAAAAGCCAGTCAATCAA+AGG | - | chr1_3:58950631-58950650 | None:intergenic | 40.0% | |
| GTGTTCAAACCAATGGGATT+TGG | - | chr1_3:58950658-58950677 | None:intergenic | 40.0% | |
| ACAAATGGCAACCTGAAAAC+TGG | - | chr1_3:58950709-58950728 | None:intergenic | 40.0% | |
| ! | TCTAATGGGAGAGGTACAAA+TGG | - | chr1_3:58950724-58950743 | None:intergenic | 40.0% |
| ! | GCCAATTTGGTGAAGGAAAT+AGG | + | chr1_3:58950760-58950779 | Msa0129130:CDS | 40.0% |
| TGGCGGTTAATACAATATGC+AGG | - | chr1_3:58951038-58951057 | None:intergenic | 40.0% | |
| ! | TTTTGAACATGGGTGTTTGG+CGG | - | chr1_3:58951055-58951074 | None:intergenic | 40.0% |
| ! | CGTTTTTGAACATGGGTGTT+TGG | - | chr1_3:58951058-58951077 | None:intergenic | 40.0% |
| !! | GTGGGATCGTTTTTGAACAT+GGG | - | chr1_3:58951065-58951084 | None:intergenic | 40.0% |
| !! | AGTGGGATCGTTTTTGAACA+TGG | - | chr1_3:58951066-58951085 | None:intergenic | 40.0% |
| AGAGGTAGACATCAAACCAA+TGG | + | chr1_3:58951125-58951144 | Msa0129130:three_prime_UTR | 40.0% | |
| AACTTGAAATCGAGCTGCTG+TGG | - | chr1_3:58948746-58948765 | None:intergenic | 45.0% | |
| !! | GCTCGATTTCAAGTTCACTG+AGG | + | chr1_3:58948751-58948770 | Msa0129130:five_prime_UTR | 45.0% |
| TATACTGGTGTCTGCTTCAG+AGG | + | chr1_3:58948793-58948812 | Msa0129130:CDS | 45.0% | |
| GTAAGATCGGAAGGATGAAC+CGG | - | chr1_3:58948829-58948848 | None:intergenic | 45.0% | |
| GATTTCACAGCTGCTTGTGT+AGG | - | chr1_3:58949371-58949390 | None:intergenic | 45.0% | |
| AATCGACCATCAGGTAGGTA+TGG | - | chr1_3:58949986-58950005 | None:intergenic | 45.0% | |
| GATCAAATCGACCATCAGGT+AGG | - | chr1_3:58949991-58950010 | None:intergenic | 45.0% | |
| TCTTGAAGCATACGATGCCT+TGG | + | chr1_3:58950009-58950028 | Msa0129130:CDS | 45.0% | |
| !! | GTTATTGTTGGTGGCACAAC+TGG | + | chr1_3:58950064-58950083 | Msa0129130:CDS | 45.0% |
| AGCAACCATACCATCCAATG+AGG | - | chr1_3:58950281-58950300 | None:intergenic | 45.0% | |
| ATATATGATCGTGGGTCCCA+TGG | - | chr1_3:58950323-58950342 | None:intergenic | 45.0% | |
| ATGTCTTGACCAGTTCGTGA+AGG | - | chr1_3:58950352-58950371 | None:intergenic | 45.0% | |
| GCTCAAAATACTTGCTTGGC+TGG | + | chr1_3:58950397-58950416 | Msa0129130:CDS | 45.0% | |
| AGGAATGTGTGGGAAATGAC+AGG | + | chr1_3:58950425-58950444 | Msa0129130:CDS | 45.0% | |
| ATAGAATCGTTGTGTGGAGC+GGG | + | chr1_3:58950467-58950486 | Msa0129130:CDS | 45.0% | |
| CAATGCCATGATGCTAGATG+GGG | + | chr1_3:58950499-58950518 | Msa0129130:CDS | 45.0% | |
| CATAACCCCATCTAGCATCA+TGG | - | chr1_3:58950507-58950526 | None:intergenic | 45.0% | |
| CATGATGCTAGATGGGGTTA+TGG | + | chr1_3:58950505-58950524 | Msa0129130:CDS | 45.0% | |
| GTTGCAAGCAATCTGATTCC+TGG | + | chr1_3:58950547-58950566 | Msa0129130:CDS | 45.0% | |
| AGCTCTTGCCTTTGATTGAC+TGG | + | chr1_3:58950620-58950639 | Msa0129130:CDS | 45.0% | |
| TTCCACATGCCAAATCCCAT+TGG | + | chr1_3:58950646-58950665 | Msa0129130:CDS | 45.0% | |
| AACCAATGGGATTTGGCATG+TGG | - | chr1_3:58950651-58950670 | None:intergenic | 45.0% | |
| AGAGCCGTGTTCAAACCAAT+GGG | - | chr1_3:58950664-58950683 | None:intergenic | 45.0% | |
| AAGAGCCGTGTTCAAACCAA+TGG | - | chr1_3:58950665-58950684 | None:intergenic | 45.0% | |
| TTGCTCAACTTGGAGTTGTC+AGG | + | chr1_3:58950683-58950702 | Msa0129130:CDS | 45.0% | |
| TGTTGGAACTGAAGACGTTC+AGG | + | chr1_3:58950795-58950814 | Msa0129130:CDS | 45.0% | |
| !! | AAACATTAAATAAAAAAAAT+TGG | - | chr1_3:58949314-58949333 | None:intergenic | 5.0% |
| GGTTTCTCAGTAAACCGCGA+AGG | + | chr1_3:58948675-58948694 | Msa0129130:five_prime_UTR | 50.0% | |
| ! | CTTCAGAGGATCCGGTTTTC+CGG | + | chr1_3:58948807-58948826 | Msa0129130:CDS | 50.0% |
| GGAAGGATGAACCGGAAAAC+CGG | - | chr1_3:58948821-58948840 | None:intergenic | 50.0% | |
| CCAATTTCCACCTCCCAATG+CGG | + | chr1_3:58949390-58949409 | Msa0129130:CDS | 50.0% | |
| TCTCAAAACTCCGCATTGGG+AGG | - | chr1_3:58949403-58949422 | None:intergenic | 50.0% | |
| CTAATGCCAACCCCACTTAG+TGG | - | chr1_3:58949510-58949529 | None:intergenic | 50.0% | |
| CTGTACCGCTGCATGTTCTA+AGG | + | chr1_3:58949793-58949812 | Msa0129130:intron | 50.0% | |
| CAGATCGAGAGTGGAGTTGA+AGG | + | chr1_3:58950040-58950059 | Msa0129130:CDS | 50.0% | |
| GCAATTCATGCCACTGAGCA+AGG | + | chr1_3:58950202-58950221 | Msa0129130:CDS | 50.0% | |
| ! | TGCCACTGAGCAAGGTTTTG+CGG | + | chr1_3:58950210-58950229 | Msa0129130:CDS | 50.0% |
| AACCGCAAAACCTTGCTCAG+TGG | - | chr1_3:58950215-58950234 | None:intergenic | 50.0% | |
| ! | ACTGAGCAAGGTTTTGCGGT+TGG | + | chr1_3:58950214-58950233 | Msa0129130:CDS | 50.0% |
| ! | GGTTTTGCGGTTGGAATGCA+TGG | + | chr1_3:58950223-58950242 | Msa0129130:CDS | 50.0% |
| ! | TACTTGCTTGGCTGGTGTCA+AGG | + | chr1_3:58950405-58950424 | Msa0129130:CDS | 50.0% |
| ! | GCTGGTGTCAAGGAATGTGT+GGG | + | chr1_3:58950415-58950434 | Msa0129130:CDS | 50.0% |
| AGATGGGGTTATGGAGCTAC+TGG | + | chr1_3:58950514-58950533 | Msa0129130:CDS | 50.0% | |
| AACACGGCTCTTGCTCAACT+TGG | + | chr1_3:58950673-58950692 | Msa0129130:CDS | 50.0% | |
| ! | GAGTTGTCAGGCCAGTTTTC+AGG | + | chr1_3:58950695-58950714 | Msa0129130:CDS | 50.0% |
| TCGAGCTGCTGTGGAGAAGA+CGG | - | chr1_3:58948737-58948756 | None:intergenic | 55.0% | |
| GGTGTCTGCTTCAGAGGATC+CGG | + | chr1_3:58948799-58948818 | Msa0129130:CDS | 55.0% | |
| CCGCATTGGGAGGTGGAAAT+TGG | - | chr1_3:58949393-58949412 | None:intergenic | 55.0% | |
| CAAAACTCCGCATTGGGAGG+TGG | - | chr1_3:58949400-58949419 | None:intergenic | 55.0% | |
| AAGGTGGTCTCGCTTGCTTC+TGG | + | chr1_3:58949827-58949846 | Msa0129130:intron | 55.0% | |
| !! | GTTGGTGGCACAACTGGTGA+AGG | + | chr1_3:58950070-58950089 | Msa0129130:CDS | 55.0% |
| ! | GGCTGGTGTCAAGGAATGTG+TGG | + | chr1_3:58950414-58950433 | Msa0129130:CDS | 55.0% |
| GTGGAGAAGACGGTGGTTGG+CGG | - | chr1_3:58948727-58948746 | None:intergenic | 60.0% | |
| GCTGTGGAGAAGACGGTGGT+TGG | - | chr1_3:58948730-58948749 | None:intergenic | 60.0% | |
| AGCTGCTGTGGAGAAGACGG+TGG | - | chr1_3:58948734-58948753 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 58948644 | 58951185 | 58948644 | ID=Msa0129130;Name=Msa0129130 |
| chr1_3 | mRNA | 58948644 | 58951185 | 58948644 | ID=Msa0129130-mRNA-1;Parent=Msa0129130;Name=Msa0129130-mRNA-1;_AED=0.01;_eAED=0.01;_QI=131|1|1|1|1|1|3|327|366 |
| chr1_3 | exon | 58948644 | 58948866 | 58948644 | ID=Msa0129130-mRNA-1:exon:19051;Parent=Msa0129130-mRNA-1 |
| chr1_3 | exon | 58949352 | 58949432 | 58949352 | ID=Msa0129130-mRNA-1:exon:19052;Parent=Msa0129130-mRNA-1 |
| chr1_3 | exon | 58949931 | 58951185 | 58949931 | ID=Msa0129130-mRNA-1:exon:19053;Parent=Msa0129130-mRNA-1 |
| chr1_3 | five_prime_UTR | 58948644 | 58948774 | 58948644 | ID=Msa0129130-mRNA-1:five_prime_utr;Parent=Msa0129130-mRNA-1 |
| chr1_3 | CDS | 58948775 | 58948866 | 58948775 | ID=Msa0129130-mRNA-1:cds;Parent=Msa0129130-mRNA-1 |
| chr1_3 | CDS | 58949352 | 58949432 | 58949352 | ID=Msa0129130-mRNA-1:cds;Parent=Msa0129130-mRNA-1 |
| chr1_3 | CDS | 58949931 | 58950858 | 58949931 | ID=Msa0129130-mRNA-1:cds;Parent=Msa0129130-mRNA-1 |
| chr1_3 | three_prime_UTR | 58950859 | 58951185 | 58950859 | ID=Msa0129130-mRNA-1:three_prime_utr;Parent=Msa0129130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
