AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0058240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 168 sgRNAs with CRISPR-Local

Find 510 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTAATAATTTCAGTTTA+TGG 0.124231 1_2:+14505195 Msa0058240:three_prime_UTR
ATTGATTGATCTTGTATAAA+AGG 0.147618 1_2:-14505868 None:intergenic
CACAAGGTATTTGTGTTAAA+TGG 0.168182 1_2:+14507192 Msa0058240:three_prime_UTR
AATTTGACGGTCTTATAAAT+AGG 0.169429 1_2:-14505837 None:intergenic
TGCTAGAGGATGAAGGTTTC+AGG 0.204895 1_2:+14500184 Msa0058240:five_prime_UTR
CTGTTAGTTGGACTTGTAAT+TGG 0.214635 1_2:+14499965 Msa0058240:five_prime_UTR
TGCTAGTGGATGAAGGTTTC+AGG 0.234532 1_2:+14506920 Msa0058240:three_prime_UTR
TACAGTTAAATGATATATTT+AGG 0.241138 1_2:+14506048 Msa0058240:three_prime_UTR
TTGAGAGGGAAGAGAGAGAT+AGG 0.250737 1_2:+14505415 Msa0058240:three_prime_UTR
CTGTTTGTTGGACTTGTAAT+TGG 0.258855 1_2:+14506683 Msa0058240:three_prime_UTR
TAACTAACCTTCTTCGCTTC+AGG 0.269400 1_2:-14504994 None:intergenic
TAAGCTCTATGGCACCTTAT+TGG 0.273150 1_2:-14500023 None:intergenic
CACAAGGTATCTGTGTTAAA+TGG 0.275289 1_2:+14507374 Msa0058240:three_prime_UTR
CGAAGAGGCAGCTAACTTAT+TGG 0.276899 1_2:+14506436 Msa0058240:three_prime_UTR
AAACAAATCACTTCTGTTCC+AGG 0.295785 1_2:+14499602 Msa0058240:five_prime_UTR
GGGAAGAGAGAGATAGGTTT+GGG 0.296473 1_2:+14505421 Msa0058240:three_prime_UTR
TTGAGAGGGGAGATAGGTTT+GGG 0.299565 1_2:+14507467 Msa0058240:three_prime_UTR
TACTCTACAAGATATATTAC+AGG 0.328683 1_2:-14506877 None:intergenic
TGTCGATTGCTTGTTGAATT+AGG 0.330237 1_2:-14507650 None:intergenic
ATTTGACGGTCTTATAAATA+GGG 0.336933 1_2:-14505836 None:intergenic
TACAACAATCTGCACTCTTC+AGG 0.340368 1_2:-14500049 None:intergenic
ATGAAACTAGGAGTGAAAAT+TGG 0.340498 1_2:-14504934 None:intergenic
TTGTAAATAATCACAAGTTT+TGG 0.346071 1_2:+14499508 Msa0058240:five_prime_UTR
TACTCTACAAGTTCTATTCC+AGG 0.349605 1_2:-14500141 None:intergenic
AAATGCACTTAATTTGGTAT+TGG 0.354016 1_2:+14506131 Msa0058240:three_prime_UTR
AATTCGACTGTGCAGATTCA+TGG 0.355987 1_2:-14499744 None:intergenic
GCCAGGCGTGCTTGCATGGC+AGG 0.363496 1_2:+14507226 Msa0058240:three_prime_UTR
CCAAGCAAGCGCGCCTGACT+TGG 0.365230 1_2:-14505352 None:intergenic
ACAGAGAGGGAAAGGGAGGC+AGG 0.367573 1_2:-14507506 None:intergenic
AGTCGAATTGGTTTATTTGT+TGG 0.369139 1_2:+14499758 Msa0058240:five_prime_UTR
GTCAGGTGCGCTTGCATGGC+AGG 0.373596 1_2:+14507408 Msa0058240:three_prime_UTR
TGCGGATTGCTTGTTGAATT+AGG 0.375558 1_2:-14499370 None:intergenic
ACTTGTAATTGGGTTTCCTT+TGG 0.378309 1_2:+14499976 Msa0058240:five_prime_UTR
ACTTGTAATTGGGTTTCCTT+TGG 0.378309 1_2:+14506694 Msa0058240:three_prime_UTR
ACCTTCTTCGCTTCAGGATC+AGG 0.380592 1_2:-14504988 None:intergenic
TTATCTCTCTTAATAATTGA+AGG 0.382150 1_2:+14505890 Msa0058240:three_prime_UTR
TTGAATCTGCACAGTCGAAT+TGG 0.384452 1_2:+14506393 Msa0058240:three_prime_UTR
ATTCTCTTTGCAGAATTTGT+TGG 0.390864 1_2:+14500347 Msa0058240:intron
ATGAATCTGCACAGTCGAAT+TGG 0.391851 1_2:+14499746 Msa0058240:five_prime_UTR
CTACCAAAGGTGTGCGTGTC+CGG 0.393864 1_2:-14505739 None:intergenic
ACCTGCCATGCAAGCACGCC+TGG 0.397471 1_2:-14507227 None:intergenic
ACTCTCTTTGCAGAATTTGT+TGG 0.397811 1_2:+14507085 Msa0058240:intron
CTATAACTGTCAACATGAAA+TGG 0.399281 1_2:+14499901 Msa0058240:five_prime_UTR
TTTGAGAGGGGAGATAGGTT+TGG 0.402730 1_2:+14507466 Msa0058240:three_prime_UTR
AGGGAAGAGAGAGATAGGTT+TGG 0.411149 1_2:+14505420 Msa0058240:three_prime_UTR
GTATAACTTTCGAATTCAAT+TGG 0.412948 1_2:+14505247 Msa0058240:three_prime_UTR
TGCCGATTGATTGTTGAATT+AGG 0.420408 1_2:-14505591 None:intergenic
GGACAGTACTGGTTGACATT+TGG 0.421403 1_2:+14506647 Msa0058240:three_prime_UTR
CCAAGTCAGGCGCGCTTGCT+TGG 0.430065 1_2:+14505352 Msa0058240:three_prime_UTR
CAATAAGTTAGCTGCCTCTT+CGG 0.433844 1_2:-14506435 None:intergenic
TTGATTGATCTTGTATAAAA+GGG 0.439101 1_2:-14505867 None:intergenic
CTCTTTGCAGAATTTGTTGG+CGG 0.443949 1_2:+14507088 Msa0058240:intron
TGTTAGTTGGACTTGTAATT+GGG 0.444723 1_2:+14499966 Msa0058240:five_prime_UTR
GTCTGTTATAAGCTGTTTGT+TGG 0.445830 1_2:+14506671 Msa0058240:three_prime_UTR
TTCATCCTCTAGCAGCAATC+AGG 0.447395 1_2:-14500175 None:intergenic
TTCATCCACTAGCAGCAATC+AGG 0.448857 1_2:-14506911 None:intergenic
CCATGTCAGGTGCGCTTGCA+TGG 0.454739 1_2:+14507404 Msa0058240:three_prime_UTR
CTCTTTGCAGAATTTGTTGG+CGG 0.457824 1_2:+14500350 Msa0058240:intron
GAATGGATCTTTGCCAAGTC+AGG 0.458335 1_2:+14505339 Msa0058240:three_prime_UTR
AAATGGATCTTTGCCATGTC+AGG 0.459169 1_2:+14507391 Msa0058240:three_prime_UTR
GACACACGACAGAGAGGGAA+AGG 0.459601 1_2:-14507514 None:intergenic
CCATGCAAGCACGCCTGGCA+TGG 0.460216 1_2:-14507222 None:intergenic
TCTTCAGGAAGTAAGCTCTA+TGG 0.460532 1_2:-14500034 None:intergenic
ATGCTATAACGCCACAATAG+TGG 0.461300 1_2:-14499656 None:intergenic
TTGTTCTAAACAGCGGATCC+TGG 0.461879 1_2:-14499620 None:intergenic
AAATGGATCTTCGCCATGCC+AGG 0.464940 1_2:+14507209 Msa0058240:three_prime_UTR
CCATGCAAGCGCACCTGACA+TGG 0.466895 1_2:-14507404 None:intergenic
AACCTAATTCAACAATCAAT+CGG 0.467086 1_2:+14505589 Msa0058240:three_prime_UTR
GAGTGAAAATTGGAGAGAAA+TGG 0.467280 1_2:-14504924 None:intergenic
TGTTTGTTGGACTTGTAATT+GGG 0.471320 1_2:+14506684 Msa0058240:three_prime_UTR
TGTAGTGACCCTTCTGATAG+AGG 0.471575 1_2:-14505792 None:intergenic
TTGGGTTTCCTTTGGATGTG+TGG 0.475566 1_2:+14499984 Msa0058240:five_prime_UTR
TTGGGTTTCCTTTGGATGTG+TGG 0.475566 1_2:+14506702 Msa0058240:three_prime_UTR
ATGTTCGTGTGAATTTCAAT+TGG 0.480350 1_2:+14500376 Msa0058240:CDS
CCATGCCAGGCGTGCTTGCA+TGG 0.481364 1_2:+14507222 Msa0058240:three_prime_UTR
TTCACTCCTAGTTTCATCCA+TGG 0.484143 1_2:+14504940 Msa0058240:CDS
ATGTTCTTGTGAATTTCAAT+TGG 0.484315 1_2:+14507287 Msa0058240:three_prime_UTR
GAGTTGTCAGTTGCAGATAG+AGG 0.485224 1_2:-14506354 None:intergenic
ACACCGGACACGCACACCTT+TGG 0.486229 1_2:+14505736 Msa0058240:three_prime_UTR
GTCAACATGAAATGGCAGTT+GGG 0.486540 1_2:+14499909 Msa0058240:five_prime_UTR
TCCTTGGCATCTTATACAAA+TGG 0.489655 1_2:-14506741 None:intergenic
TTTGTTGGCTCATGACCACT+TGG 0.490504 1_2:+14499773 Msa0058240:five_prime_UTR
CTTTATTAAATTTCTACCAT+AGG 0.493666 1_2:-14499477 None:intergenic
ACAACCATGTAGATATGTAC+TGG 0.501174 1_2:-14499847 None:intergenic
GCTAGAGGATGAAGGTTTCA+GGG 0.506453 1_2:+14500185 Msa0058240:five_prime_UTR
TCGAATTCAATTGGTGAGAT+CGG 0.507570 1_2:+14505256 Msa0058240:three_prime_UTR
GGCAAGACACACACAACAGA+GGG 0.509568 1_2:-14505477 None:intergenic
CATGTGTTGGAGATACTGAT+AGG 0.509796 1_2:+14505134 Msa0058240:three_prime_UTR
TGTCAACATGAAATGGCAGT+TGG 0.510331 1_2:+14499908 Msa0058240:five_prime_UTR
CAAAATATAATAACATCTAA+AGG 0.510483 1_2:-14505225 None:intergenic
ATCACAAGTGTTGGTGTCAG+TGG 0.510721 1_2:+14505769 Msa0058240:three_prime_UTR
CTCTGCTTCAGAAAACTGTC+GGG 0.512188 1_2:-14506961 None:intergenic
TTCTTGTGAATTTCAATTGG+TGG 0.514534 1_2:+14507290 Msa0058240:three_prime_UTR
ACCTGATCCTGAAGCGAAGA+AGG 0.514883 1_2:+14504987 Msa0058240:CDS
TGATTGCTGCTAGTGGATGA+AGG 0.517657 1_2:+14506913 Msa0058240:three_prime_UTR
AGAAATTTAATCACAAGTGT+TGG 0.519930 1_2:+14505760 Msa0058240:three_prime_UTR
TACAGTCTTGAAAATAAAGA+CGG 0.521370 1_2:-14499563 None:intergenic
ATCGGCAACACGTTGAGGTA+TGG 0.522223 1_2:+14505607 Msa0058240:three_prime_UTR
GAGGATGAAGGTTTCAGGGC+TGG 0.522981 1_2:+14500189 Msa0058240:five_prime_UTR
ATCGAGATCTCGAAGATCCA+TGG 0.523751 1_2:-14504957 None:intergenic
TGTCAGTGGCCTCTATCAGA+AGG 0.528929 1_2:+14505783 Msa0058240:three_prime_UTR
AAATGGCAGTTGGGAAGTAC+TGG 0.530280 1_2:+14499918 Msa0058240:five_prime_UTR
CACAAACACTGAAACACCTA+TGG 0.531530 1_2:+14499461 Msa0058240:five_prime_UTR
TGTGATTAAATTTCTACCAA+AGG 0.532162 1_2:-14505752 None:intergenic
AAAGGGACAACAAAATTTGA+CGG 0.533761 1_2:-14505850 None:intergenic
ACACACGACAGAGAGGGAAA+GGG 0.533832 1_2:-14507513 None:intergenic
ATCCGCAACACATCGAGGTA+TGG 0.540716 1_2:+14499386 Msa0058240:five_prime_UTR
GACAAGACACACGACAGAGA+GGG 0.541223 1_2:-14507519 None:intergenic
TCTCTGCTTCAGAAAACTGT+CGG 0.542719 1_2:-14506962 None:intergenic
CAGAGAGGGAAAGGGAGGCA+GGG 0.543529 1_2:-14507505 None:intergenic
AGTTATATAGAGTATAAATA+CGG 0.544634 1_2:-14506604 None:intergenic
GTGTCAAATAGCGGCTATTG+TGG 0.544841 1_2:+14506203 Msa0058240:three_prime_UTR
TGCCTACATGAAATGTCAGC+TGG 0.545987 1_2:+14506626 Msa0058240:three_prime_UTR
GTGGATGAAGGTTTCAGGAC+TGG 0.549092 1_2:+14506925 Msa0058240:three_prime_UTR
ATTTCTGTGAGATTTGTGAA+TGG 0.549152 1_2:+14505322 Msa0058240:three_prime_UTR
TCTTGTGAATTTCAATTGGT+GGG 0.549183 1_2:+14507291 Msa0058240:three_prime_UTR
AGCCATACCTCGATGTGTTG+CGG 0.550284 1_2:-14499388 None:intergenic
GGTCTTATAAATATGATATG+TGG 0.550928 1_2:+14505982 Msa0058240:three_prime_UTR
TGATTGCTGCTAGAGGATGA+AGG 0.551028 1_2:+14500177 Msa0058240:five_prime_UTR
ATAAAATTCCACACATCCAA+AGG 0.553755 1_2:-14499992 None:intergenic
ATAAAATTCCACACATCCAA+AGG 0.553755 1_2:-14506710 None:intergenic
ATATCAAGCATTGTGCGACC+TGG 0.555373 1_2:+14500123 Msa0058240:five_prime_UTR
AATCATTTATCTTGCCGAAG+AGG 0.557072 1_2:+14506421 Msa0058240:three_prime_UTR
AGGCAAGACACACACAACAG+AGG 0.557359 1_2:-14505478 None:intergenic
GGAGCATAATAGTAGAGTAA+AGG 0.557905 1_2:-14507593 None:intergenic
TAGTCAAATAGCCGCTATTG+TGG 0.561562 1_2:+14506292 Msa0058240:three_prime_UTR
ACAACCGTGTAGATATGTAC+TGG 0.565298 1_2:-14506566 None:intergenic
TTCTTCGCTTCAGGATCAGG+TGG 0.569099 1_2:-14504985 None:intergenic
AAATGTCAGCTGGACAGTAC+TGG 0.576597 1_2:+14506636 Msa0058240:three_prime_UTR
TCCATTTGTATAAGATGCCA+AGG 0.583389 1_2:+14506740 Msa0058240:three_prime_UTR
GAAGATCCATGGATGAAACT+AGG 0.584670 1_2:-14504946 None:intergenic
GGCAGTTGGGAAGTACTGGT+TGG 0.595815 1_2:+14499922 Msa0058240:five_prime_UTR
CTATCAGTATCTCCAACACA+TGG 0.596329 1_2:-14505133 None:intergenic
CACGACAGAGAGGGAAAGGG+AGG 0.596663 1_2:-14507510 None:intergenic
TCTTCAGCTAGTAAGCTCCT+TGG 0.600881 1_2:-14506757 None:intergenic
AATCAATCGGCAACACGTTG+AGG 0.601377 1_2:+14505602 Msa0058240:three_prime_UTR
TATACGTATCACAGTTCAAG+TGG 0.604415 1_2:-14506506 None:intergenic
TCTCTGCTTCAGAAAACTGT+AGG 0.606090 1_2:-14500226 None:intergenic
ATGCTATAACGCCACAATAG+CGG 0.607191 1_2:-14506303 None:intergenic
GTGATGCGTGCACTATTACA+AGG 0.611722 1_2:+14505552 Msa0058240:three_prime_UTR
TAGTCAAATAGCCACTATTG+TGG 0.613442 1_2:+14499645 Msa0058240:five_prime_UTR
GGAAGAGAGAGATAGGTTTG+GGG 0.617373 1_2:+14505422 Msa0058240:three_prime_UTR
GACTACATTGTTCTAAACAG+CGG 0.620215 1_2:-14499627 None:intergenic
TCACAGTTCAAGTGGTCATG+AGG 0.620580 1_2:-14506498 None:intergenic
GTCAGTGGCCTCTATCAGAA+GGG 0.622830 1_2:+14505784 Msa0058240:three_prime_UTR
AGACAAGACACACGACAGAG+AGG 0.623047 1_2:-14507520 None:intergenic
GAAGACCTGATTGCTGCTAG+TGG 0.627925 1_2:+14506906 Msa0058240:three_prime_UTR
TGAAAATTGGAGAGAAATGG+TGG 0.630936 1_2:-14504921 None:intergenic
ACAGAGGGAAAGATAGAGAG+AGG 0.632585 1_2:-14505462 None:intergenic
TGAGAGGGGAGATAGGTTTG+GGG 0.633998 1_2:+14507468 Msa0058240:three_prime_UTR
ATTGCCGAGATCAGAAGTCG+TGG 0.641097 1_2:+14507132 Msa0058240:three_prime_UTR
GCATCCACGACTTCTGATCT+CGG 0.645336 1_2:-14507136 None:intergenic
ATTGGTGGGATCAGAAGTCG+AGG 0.658512 1_2:+14507305 Msa0058240:three_prime_UTR
TTATAAATATGATATGTGGA+CGG 0.658537 1_2:+14505986 Msa0058240:three_prime_UTR
TTATACTATCACAGTCCAAG+TGG 0.658776 1_2:-14499788 None:intergenic
GAAGACCTGATTGCTGCTAG+AGG 0.659502 1_2:+14500170 Msa0058240:five_prime_UTR
AGTATATACACAACAACACA+AGG 0.665437 1_2:+14507176 Msa0058240:three_prime_UTR
GAGGGAAAGATAGAGAGAGG+CGG 0.671440 1_2:-14505459 None:intergenic
TCTAAGTTAGTGTCAAATAG+CGG 0.674673 1_2:+14506194 Msa0058240:three_prime_UTR
AGCTTACTAGCTGAAGAGTG+CGG 0.679589 1_2:+14506763 Msa0058240:three_prime_UTR
GTCCAGCTGACATTTCATGT+AGG 0.688195 1_2:-14506628 None:intergenic
GCTCCACACATAAAATCACA+AGG 0.691627 1_2:+14507611 Msa0058240:three_prime_UTR
TAAATATGATATGTGGACGG+AGG 0.699407 1_2:+14505989 Msa0058240:three_prime_UTR
AGTCTTGAAAATAAAGACGG+AGG 0.702203 1_2:-14499560 None:intergenic
GGTCTTATAAATAGGGACAG+AGG 0.702607 1_2:-14505829 None:intergenic
AAGCAATCCGCAACACATCG+AGG 0.722711 1_2:+14499381 Msa0058240:five_prime_UTR
AGTATATACACAATAGCACA+AGG 0.730725 1_2:+14507358 Msa0058240:three_prime_UTR
AGTATGAAGAACAGACACAC+CGG 0.736439 1_2:+14505720 Msa0058240:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTTTTTTTTTTTT+AGG + chr1_2:14503288-14503307 Msa0058240:intron 0.0%
!!! TAATTTTTTTTTTTTTTTTA+GGG + chr1_2:14503289-14503308 Msa0058240:intron 0.0%
!!! GTTTTAATAATTTTTTTAGT+CGG + chr1_2:14502143-14502162 Msa0058240:intron 10.0%
!!! TTTTAATTAACAAAAGAATT+TGG - chr1_2:14504327-14504346 None:intergenic 10.0%
!!! TCAAAACAATTTAGATTTTT+CGG - chr1_2:14500524-14500543 None:intergenic 15.0%
!!! TTTCAATATTAAACGATTTT+GGG + chr1_2:14501942-14501961 Msa0058240:intron 15.0%
!! AAGATTGAATCTTAAAATTT+AGG + chr1_2:14503177-14503196 Msa0058240:intron 15.0%
!! GTTCTACATAAAAATATTAT+CGG - chr1_2:14503318-14503337 None:intergenic 15.0%
!!! ATATTTTTATGTAGAACAAA+TGG + chr1_2:14503321-14503340 Msa0058240:intron 15.0%
!!! TATTTTTATGTAGAACAAAT+GGG + chr1_2:14503322-14503341 Msa0058240:intron 15.0%
!!! TTTTTTTTAGAAAACATAAC+TGG + chr1_2:14503491-14503510 Msa0058240:intron 15.0%
!!! AATTGTTTAAAATTCAGAAT+AGG + chr1_2:14503552-14503571 Msa0058240:intron 15.0%
!!! AGATTATAAGATTTTATCAA+AGG - chr1_2:14504567-14504586 None:intergenic 15.0%
!! TAATCTTATCTTTACATTAT+TGG + chr1_2:14504581-14504600 Msa0058240:intron 15.0%
!! TTGTTAATAATTTCAGTTTA+TGG + chr1_2:14505195-14505214 Msa0058240:three_prime_UTR 15.0%
!! CAAAATATAATAACATCTAA+AGG - chr1_2:14505228-14505247 None:intergenic 15.0%
!! TACAGTTAAATGATATATTT+AGG + chr1_2:14506048-14506067 Msa0058240:three_prime_UTR 15.0%
!! ATAAAAAAATGCACTTAATT+TGG + chr1_2:14506125-14506144 Msa0058240:three_prime_UTR 15.0%
!! AGTTATATAGAGTATAAATA+CGG - chr1_2:14506607-14506626 None:intergenic 15.0%
!!! TAAAAACAATTCAGATTTTT+CGG - chr1_2:14507253-14507272 None:intergenic 15.0%
!! CTTTATTAAATTTCTACCAT+AGG - chr1_2:14499480-14499499 None:intergenic 20.0%
!!! TTGTAAATAATCACAAGTTT+TGG + chr1_2:14499508-14499527 Msa0058240:five_prime_UTR 20.0%
!!! AAGTGATTTGTTTTAAATAG+CGG - chr1_2:14499595-14499614 None:intergenic 20.0%
!!! TCTAAATTGTTTTGATTTGT+TGG + chr1_2:14500529-14500548 Msa0058240:intron 20.0%
!!! GTAACTTCATTAAGATTTTT+CGG - chr1_2:14500706-14500725 None:intergenic 20.0%
!!! TACATTAATTTTGTTTTGAG+AGG + chr1_2:14500723-14500742 Msa0058240:intron 20.0%
!!! ACATTAATTTTGTTTTGAGA+GGG + chr1_2:14500724-14500743 Msa0058240:intron 20.0%
!!! TACAATCCTTGTAATTTTAT+GGG - chr1_2:14500863-14500882 None:intergenic 20.0%
!!! TTACAATCCTTGTAATTTTA+TGG - chr1_2:14500864-14500883 None:intergenic 20.0%
!! TGGTTTATGATTAAAATTGA+AGG + chr1_2:14501014-14501033 Msa0058240:intron 20.0%
!! TTTCATCCTGATAAAAAAAA+TGG - chr1_2:14501685-14501704 None:intergenic 20.0%
!!! CAACATTTTTAACACTAAAT+TGG - chr1_2:14501708-14501727 None:intergenic 20.0%
!! TTAGTGTTAAAAATGTTGTA+TGG + chr1_2:14501710-14501729 Msa0058240:intron 20.0%
!!! AATACAGTTCATTTTTTTCT+AGG + chr1_2:14501864-14501883 Msa0058240:intron 20.0%
!!! CTTTCAATATTAAACGATTT+TGG + chr1_2:14501941-14501960 Msa0058240:intron 20.0%
!! TGGAGTATATAATATTATGA+TGG + chr1_2:14502336-14502355 Msa0058240:intron 20.0%
!! TAATATTATGATGGTTATTC+AGG + chr1_2:14502345-14502364 Msa0058240:intron 20.0%
!! AATATTATGATGGTTATTCA+GGG + chr1_2:14502346-14502365 Msa0058240:intron 20.0%
!! AAAGCCAAAAATTAATTAGT+TGG - chr1_2:14502517-14502536 None:intergenic 20.0%
!! CAAATTTATAAGTCACAAAT+TGG - chr1_2:14502556-14502575 None:intergenic 20.0%
!!! AAATAGTACAAGGAAAATTT+TGG + chr1_2:14502687-14502706 Msa0058240:intron 20.0%
!! TGAATATTAATTCCTTTCAA+AGG + chr1_2:14502741-14502760 Msa0058240:intron 20.0%
!!! TTAGTTGATATTTACTCATT+TGG - chr1_2:14502798-14502817 None:intergenic 20.0%
!! AACTAAAAGTTTCCTTAAAA+TGG + chr1_2:14502812-14502831 Msa0058240:intron 20.0%
!! TATGAATGAATAGTGAATTT+AGG + chr1_2:14503209-14503228 Msa0058240:intron 20.0%
!!! ATTTTTATGTAGAACAAATG+GGG + chr1_2:14503323-14503342 Msa0058240:intron 20.0%
!!! TTTCTAAAAAAAATAGACCA+TGG - chr1_2:14503484-14503503 None:intergenic 20.0%
!!! TTTAATCTGAAGTTAGAATA+CGG - chr1_2:14504085-14504104 None:intergenic 20.0%
!! ATCAAAACAAGAAGTTTAAT+AGG + chr1_2:14504215-14504234 Msa0058240:intron 20.0%
!! ATCTTTACATTATTGGAAAA+AGG + chr1_2:14504588-14504607 Msa0058240:intron 20.0%
!! TCTTTACATTATTGGAAAAA+GGG + chr1_2:14504589-14504608 Msa0058240:intron 20.0%
!! TAAACTAATACTGTTTGATA+CGG - chr1_2:14504666-14504685 None:intergenic 20.0%
!!! TATCAAACAGTATTAGTTTA+TGG + chr1_2:14504666-14504685 Msa0058240:intron 20.0%
!!! ATCAAACAGTATTAGTTTAT+GGG + chr1_2:14504667-14504686 Msa0058240:intron 20.0%
!!! TTTCGTTTTTTTAAGCTTTT+GGG - chr1_2:14504697-14504716 None:intergenic 20.0%
!!! TTTTCGTTTTTTTAAGCTTT+TGG - chr1_2:14504698-14504717 None:intergenic 20.0%
!! TTTATATAAAGTGAGTTATG+GGG - chr1_2:14504839-14504858 None:intergenic 20.0%
!! GTTTATATAAAGTGAGTTAT+GGG - chr1_2:14504840-14504859 None:intergenic 20.0%
!!! GCAATTTTATTAAGCTTTTT+CGG - chr1_2:14505383-14505402 None:intergenic 20.0%
!! TTGATTGATCTTGTATAAAA+GGG - chr1_2:14505870-14505889 None:intergenic 20.0%
!! ATTGATTGATCTTGTATAAA+AGG - chr1_2:14505871-14505890 None:intergenic 20.0%
!! TTATCTCTCTTAATAATTGA+AGG + chr1_2:14505890-14505909 Msa0058240:three_prime_UTR 20.0%
!! TTATAAATATGATATGTGGA+CGG + chr1_2:14505986-14506005 Msa0058240:three_prime_UTR 20.0%
!!! TTTTTGTAAAAAACTCTGAA+CGG + chr1_2:14506788-14506807 Msa0058240:three_prime_UTR 20.0%
!!! TCTGAATTGTTTTTATTTGT+TGG + chr1_2:14507258-14507277 Msa0058240:three_prime_UTR 20.0%
!!! GTAACTTCATTAAGATTTTT+CGG - chr1_2:14500706-14500725 None:intergenic 20.0%
! TACAGTCTTGAAAATAAAGA+CGG - chr1_2:14499566-14499585 None:intergenic 25.0%
! CTGGAAAAAGCAAATAAAAT+TGG - chr1_2:14499831-14499850 None:intergenic 25.0%
!! TTTTATCGTATGAACCAATA+AGG + chr1_2:14500009-14500028 Msa0058240:five_prime_UTR 25.0%
! ATGTTCTTGTGAATTTCAAT+TGG + chr1_2:14500558-14500577 Msa0058240:intron 25.0%
!!! CATTAATTTTGTTTTGAGAG+GGG + chr1_2:14500725-14500744 Msa0058240:intron 25.0%
! ACAAATAATGTCATGAATTC+AGG - chr1_2:14500995-14501014 None:intergenic 25.0%
! TGAATTCATGACATTATTTG+TGG + chr1_2:14500994-14501013 Msa0058240:intron 25.0%
! AAATCTGTATATAACAGACT+TGG + chr1_2:14501105-14501124 Msa0058240:intron 25.0%
! AACTAGCACTTATAATACAA+CGG - chr1_2:14501335-14501354 None:intergenic 25.0%
!! TTTTTAGATGACGATGTTAT+TGG + chr1_2:14501652-14501671 Msa0058240:intron 25.0%
!! TTTTAGATGACGATGTTATT+GGG + chr1_2:14501653-14501672 Msa0058240:intron 25.0%
!!! ATTGCTCCATTTTTTTTATC+AGG + chr1_2:14501676-14501695 Msa0058240:intron 25.0%
! ATATTATATACTCCAATGAC+AGG - chr1_2:14502331-14502350 None:intergenic 25.0%
! TGAAGAAAGTTAAATTAGAG+GGG - chr1_2:14502479-14502498 None:intergenic 25.0%
! GTGAAGAAAGTTAAATTAGA+GGG - chr1_2:14502480-14502499 None:intergenic 25.0%
!! CTCTCCAACTAATTAATTTT+TGG + chr1_2:14502510-14502529 Msa0058240:intron 25.0%
!! TCTAAAATGCATTTGAAATG+AGG + chr1_2:14502592-14502611 Msa0058240:intron 25.0%
! ATCTAAAAGAGTAACCTAAA+GGG - chr1_2:14502714-14502733 None:intergenic 25.0%
! TATCTAAAAGAGTAACCTAA+AGG - chr1_2:14502715-14502734 None:intergenic 25.0%
! AATGTAGTGTTAATAATGAC+AGG + chr1_2:14503000-14503019 Msa0058240:intron 25.0%
!!! AAACACTATTTGTTATACTG+AGG + chr1_2:14503091-14503110 Msa0058240:intron 25.0%
!!! AACACTATTTGTTATACTGA+GGG + chr1_2:14503092-14503111 Msa0058240:intron 25.0%
!!! TGTTTGCATGATTTTTTTCT+CGG + chr1_2:14503127-14503146 Msa0058240:intron 25.0%
! CACAACAAATTATATATCAC+AGG - chr1_2:14503235-14503254 None:intergenic 25.0%
!! TTTTTATGTAGAACAAATGG+GGG + chr1_2:14503324-14503343 Msa0058240:intron 25.0%
!!! ACGTTTTAGTATTTCTCTTT+TGG + chr1_2:14503429-14503448 Msa0058240:intron 25.0%
!! CTCTTTTGGATATTCTTATT+TGG + chr1_2:14503443-14503462 Msa0058240:intron 25.0%
! ACGCATTGAATAACTATAAA+TGG - chr1_2:14503517-14503536 None:intergenic 25.0%
! GAAAACTTTCCATCTAATTA+AGG - chr1_2:14503889-14503908 None:intergenic 25.0%
!! AAAGTTTTCTATAGCATACA+GGG + chr1_2:14503900-14503919 Msa0058240:intron 25.0%
!!! AGTTTTAATTTTTGAGCACT+TGG + chr1_2:14503995-14504014 Msa0058240:intron 25.0%
!!! GTTTTAATTTTTGAGCACTT+GGG + chr1_2:14503996-14504015 Msa0058240:intron 25.0%
!! CTCTAGAAGTATATATTACA+GGG - chr1_2:14504427-14504446 None:intergenic 25.0%
! CTTTCATAGTCACAAAATTA+TGG + chr1_2:14504452-14504471 Msa0058240:intron 25.0%
! TACAAATATAAAACTCCCAT+TGG + chr1_2:14504620-14504639 Msa0058240:intron 25.0%
! GGTTTATATAAAGTGAGTTA+TGG - chr1_2:14504841-14504860 None:intergenic 25.0%
! GTATAACTTTCGAATTCAAT+TGG + chr1_2:14505247-14505266 Msa0058240:three_prime_UTR 25.0%
! AACCTAATTCAACAATCAAT+CGG + chr1_2:14505589-14505608 Msa0058240:three_prime_UTR 25.0%
! TGTGATTAAATTTCTACCAA+AGG - chr1_2:14505755-14505774 None:intergenic 25.0%
! AGAAATTTAATCACAAGTGT+TGG + chr1_2:14505760-14505779 Msa0058240:three_prime_UTR 25.0%
!! ATTTGACGGTCTTATAAATA+GGG - chr1_2:14505839-14505858 None:intergenic 25.0%
!! AATTTGACGGTCTTATAAAT+AGG - chr1_2:14505840-14505859 None:intergenic 25.0%
!! GGTCTTATAAATATGATATG+TGG + chr1_2:14505982-14506001 Msa0058240:three_prime_UTR 25.0%
!! AAATGCACTTAATTTGGTAT+TGG + chr1_2:14506131-14506150 Msa0058240:three_prime_UTR 25.0%
!!! CTACACTTTGTTTTAAATAG+CGG - chr1_2:14506275-14506294 None:intergenic 25.0%
! TACTCTACAAGATATATTAC+AGG - chr1_2:14506880-14506899 None:intergenic 25.0%
! ATGTTCTTGTGAATTTCAAT+TGG + chr1_2:14500558-14500577 Msa0058240:intron 25.0%
!!! TACAGTTATTTTGTTTTGAG+AGG + chr1_2:14507452-14507471 Msa0058240:three_prime_UTR 25.0%
!!! ACAGTTATTTTGTTTTGAGA+GGG + chr1_2:14507453-14507472 Msa0058240:three_prime_UTR 25.0%
!! ATAATCACAAGTTTTGGTGT+AGG + chr1_2:14499514-14499533 Msa0058240:five_prime_UTR 30.0%
!! TAATCACAAGTTTTGGTGTA+GGG + chr1_2:14499515-14499534 Msa0058240:five_prime_UTR 30.0%
! AGTCGAATTGGTTTATTTGT+TGG + chr1_2:14499758-14499777 Msa0058240:five_prime_UTR 30.0%
! TTTTCCAGTACATATCTACA+TGG + chr1_2:14499843-14499862 Msa0058240:five_prime_UTR 30.0%
CTATAACTGTCAACATGAAA+TGG + chr1_2:14499901-14499920 Msa0058240:five_prime_UTR 30.0%
! TTCTTTTCTAAGCTGTTAGT+TGG + chr1_2:14499953-14499972 Msa0058240:five_prime_UTR 30.0%
TGTTAGTTGGACTTGTAATT+GGG + chr1_2:14499966-14499985 Msa0058240:five_prime_UTR 30.0%
ATAAAATTCCACACATCCAA+AGG - chr1_2:14499995-14500014 None:intergenic 30.0%
ATTCTCTTTGCAGAATTTGT+TGG + chr1_2:14500347-14500366 Msa0058240:intron 30.0%
ATGTTCGTGTGAATTTCAAT+TGG + chr1_2:14500376-14500395 Msa0058240:CDS 30.0%
AGTATATACACAACAACACA+AGG + chr1_2:14500447-14500466 Msa0058240:intron 30.0%
GAGCATAATGGTAAAGTAAA+AGG - chr1_2:14500838-14500857 None:intergenic 30.0%
! AATCCTTGTAATTTTATGGG+TGG - chr1_2:14500860-14500879 None:intergenic 30.0%
ATTCAGGAGAGAATAAATTC+TGG - chr1_2:14500979-14500998 None:intergenic 30.0%
ATGATTAAAATTGAAGGCCA+TGG + chr1_2:14501020-14501039 Msa0058240:intron 30.0%
TATATAACAGACTTGGCATT+GGG + chr1_2:14501112-14501131 Msa0058240:intron 30.0%
!! ACATGAAATGACTTTGAAAC+TGG + chr1_2:14501252-14501271 Msa0058240:intron 30.0%
! AACTGGCACTTTTAATACAA+CGG - chr1_2:14501289-14501308 None:intergenic 30.0%
GTTGTATTATAAGTGCTAGT+TGG + chr1_2:14501334-14501353 Msa0058240:intron 30.0%
! AGGGTCATTAGATGTTTTAT+TGG + chr1_2:14501569-14501588 Msa0058240:intron 30.0%
!! GTCATTAGATGTTTTATTGG+AGG + chr1_2:14501572-14501591 Msa0058240:intron 30.0%
AACATCGTCATCTAAAAATG+AGG - chr1_2:14501650-14501669 None:intergenic 30.0%
TAGTCTAAATATTCAATGCC+AGG + chr1_2:14501782-14501801 Msa0058240:intron 30.0%
AGTCTAAATATTCAATGCCA+GGG + chr1_2:14501783-14501802 Msa0058240:intron 30.0%
TTCCATGACCAATAGAAAAA+GGG - chr1_2:14501830-14501849 None:intergenic 30.0%
TTTCCATGACCAATAGAAAA+AGG - chr1_2:14501831-14501850 None:intergenic 30.0%
! TATTAAACGATTTTGGGCTA+TGG + chr1_2:14501948-14501967 Msa0058240:intron 30.0%
! ATTAAACGATTTTGGGCTAT+GGG + chr1_2:14501949-14501968 Msa0058240:intron 30.0%
ATTGAGATATTCCAGACTAT+TGG + chr1_2:14502010-14502029 Msa0058240:intron 30.0%
!! TGTCCATGTTAATGTTTTTG+TGG + chr1_2:14502108-14502127 Msa0058240:intron 30.0%
AGCATGTAACTTGATATCTT+TGG + chr1_2:14502193-14502212 Msa0058240:intron 30.0%
!! TGACTAGTTTCTAGTGATAT+TGG + chr1_2:14502226-14502245 Msa0058240:intron 30.0%
!! GACTAGTTTCTAGTGATATT+GGG + chr1_2:14502227-14502246 Msa0058240:intron 30.0%
! GCAATGGAAAAGAGATTTTA+AGG - chr1_2:14502429-14502448 None:intergenic 30.0%
GAAGAAAGTTAAATTAGAGG+GGG - chr1_2:14502478-14502497 None:intergenic 30.0%
GGTGAAGAAAGTTAAATTAG+AGG - chr1_2:14502481-14502500 None:intergenic 30.0%
TTAGTTGGAGAGATATATAC+AGG - chr1_2:14502502-14502521 None:intergenic 30.0%
GATCACTAGAAAATAGTACA+AGG + chr1_2:14502677-14502696 Msa0058240:intron 30.0%
TCTAAAAGAGTAACCTAAAG+GGG - chr1_2:14502713-14502732 None:intergenic 30.0%
ACTGATGTTTATCCTTTGAA+AGG - chr1_2:14502756-14502775 None:intergenic 30.0%
!! ACACTATTTGTTATACTGAG+GGG + chr1_2:14503093-14503112 Msa0058240:intron 30.0%
!!! GTTTGCATGATTTTTTTCTC+GGG + chr1_2:14503128-14503147 Msa0058240:intron 30.0%
TAAAACGTAAATCTATACGC+TGG - chr1_2:14503417-14503436 None:intergenic 30.0%
! GGAAAAAATGTGTTTTTCCA+TGG + chr1_2:14503464-14503483 Msa0058240:intron 30.0%
!! TTTGAAAGTATTTAACCCTC+TGG + chr1_2:14503577-14503596 Msa0058240:intron 30.0%
CTAACATGATTGACAAAAGT+CGG - chr1_2:14503684-14503703 None:intergenic 30.0%
!! TTACTTTTAAACACCGATCT+AGG - chr1_2:14503766-14503785 None:intergenic 30.0%
TAAGAAGTGAAAGTAACCTA+CGG - chr1_2:14503791-14503810 None:intergenic 30.0%
! TAGGTTACTTTCACTTCTTA+AGG + chr1_2:14503791-14503810 Msa0058240:intron 30.0%
TGATGTCAACCTTAATTAGA+TGG + chr1_2:14503877-14503896 Msa0058240:intron 30.0%
! GAAAGTTTTCTATAGCATAC+AGG + chr1_2:14503899-14503918 Msa0058240:intron 30.0%
!!! ACGAGAAGAACTTGTTTTTT+AGG + chr1_2:14504021-14504040 Msa0058240:intron 30.0%
CTTCAGATTAAAATGAGTAG+AGG + chr1_2:14504093-14504112 Msa0058240:intron 30.0%
ATTGTCTCATTTGTCAAGTA+TGG - chr1_2:14504186-14504205 None:intergenic 30.0%
TTCCTTCATATAAATCCACA+GGG + chr1_2:14504247-14504266 Msa0058240:intron 30.0%
!! GCTCTAGAAGTATATATTAC+AGG - chr1_2:14504428-14504447 None:intergenic 30.0%
AGGTGTTCAAAATGTATGAT+TGG + chr1_2:14504520-14504539 Msa0058240:intron 30.0%
TACATTATTGGAAAAAGGGA+AGG + chr1_2:14504593-14504612 Msa0058240:intron 30.0%
ACATTATTGGAAAAAGGGAA+GGG + chr1_2:14504594-14504613 Msa0058240:intron 30.0%
AATATAAAACTCCCATTGGT+AGG + chr1_2:14504624-14504643 Msa0058240:intron 30.0%
!!! GTTTTTTTAAGCTTTTGGGA+AGG - chr1_2:14504693-14504712 None:intergenic 30.0%
GATTGATTAAGTAAGTTAGG+CGG - chr1_2:14504778-14504797 None:intergenic 30.0%
CCAGATTGATTAAGTAAGTT+AGG - chr1_2:14504781-14504800 None:intergenic 30.0%
CCTAACTTACTTAATCAATC+TGG + chr1_2:14504778-14504797 Msa0058240:intron 30.0%
GGTAAGAAATGGTTTATGAT+CGG - chr1_2:14504862-14504881 None:intergenic 30.0%
TAATAATGCTATGTTTCACG+CGG - chr1_2:14504898-14504917 None:intergenic 30.0%
ATGAAACTAGGAGTGAAAAT+TGG - chr1_2:14504937-14504956 None:intergenic 30.0%
ATTTCTGTGAGATTTGTGAA+TGG + chr1_2:14505322-14505341 Msa0058240:three_prime_UTR 30.0%
!!! TGCAGTTATTTTGTTTTGAG+AGG + chr1_2:14505400-14505419 Msa0058240:three_prime_UTR 30.0%
!!! GCAGTTATTTTGTTTTGAGA+GGG + chr1_2:14505401-14505420 Msa0058240:three_prime_UTR 30.0%
ATAGAAAAAAGAGATGCAAG+AGG - chr1_2:14505501-14505520 None:intergenic 30.0%
AAAGGGACAACAAAATTTGA+CGG - chr1_2:14505853-14505872 None:intergenic 30.0%
!! ATTCTCTCGCTTTTATCAAA+AGG + chr1_2:14505960-14505979 Msa0058240:three_prime_UTR 30.0%
!! TTCTCTCGCTTTTATCAAAA+GGG + chr1_2:14505961-14505980 Msa0058240:three_prime_UTR 30.0%
TCTAAGTTAGTGTCAAATAG+CGG + chr1_2:14506194-14506213 Msa0058240:three_prime_UTR 30.0%
! TTTTCCAGTACATATCTACA+CGG + chr1_2:14499843-14499862 Msa0058240:five_prime_UTR 30.0%
! TGTTTGTTGGACTTGTAATT+GGG + chr1_2:14506684-14506703 Msa0058240:three_prime_UTR 30.0%
ATAAAATTCCACACATCCAA+AGG - chr1_2:14499995-14500014 None:intergenic 30.0%
AGTATATACACAACAACACA+AGG + chr1_2:14500447-14500466 Msa0058240:intron 30.0%
! CACAAGGTATTTGTGTTAAA+TGG + chr1_2:14507192-14507211 Msa0058240:three_prime_UTR 30.0%
TTCTTGTGAATTTCAATTGG+TGG + chr1_2:14500561-14500580 Msa0058240:intron 30.0%
TCTTGTGAATTTCAATTGGT+GGG + chr1_2:14500562-14500581 Msa0058240:intron 30.0%
AGTATATACACAATAGCACA+AGG + chr1_2:14507358-14507377 Msa0058240:three_prime_UTR 30.0%
!!! CAGTTATTTTGTTTTGAGAG+GGG + chr1_2:14505402-14505421 Msa0058240:three_prime_UTR 30.0%
! AATCCTTGTGATTTTATGTG+TGG - chr1_2:14507617-14507636 None:intergenic 30.0%
AGTCTTGAAAATAAAGACGG+AGG - chr1_2:14499563-14499582 None:intergenic 35.0%
AAACAAATCACTTCTGTTCC+AGG + chr1_2:14499602-14499621 Msa0058240:five_prime_UTR 35.0%
! GACTACATTGTTCTAAACAG+CGG - chr1_2:14499630-14499649 None:intergenic 35.0%
TAGTCAAATAGCCACTATTG+TGG + chr1_2:14499645-14499664 Msa0058240:five_prime_UTR 35.0%
TTATACTATCACAGTCCAAG+TGG - chr1_2:14499791-14499810 None:intergenic 35.0%
ACAACCATGTAGATATGTAC+TGG - chr1_2:14499850-14499869 None:intergenic 35.0%
CTGTTAGTTGGACTTGTAAT+TGG + chr1_2:14499965-14499984 Msa0058240:five_prime_UTR 35.0%
ACTTGTAATTGGGTTTCCTT+TGG + chr1_2:14499976-14499995 Msa0058240:five_prime_UTR 35.0%
TACTCTACAAGTTCTATTCC+AGG - chr1_2:14500144-14500163 None:intergenic 35.0%
! AGGTCATTCAATGCTTTTGT+TGG + chr1_2:14500249-14500268 Msa0058240:exon 35.0%
! TCATTCAATGCTTTTGTTGG+AGG + chr1_2:14500252-14500271 Msa0058240:exon 35.0%
!! AATGCTTTTGTTGGAGGTAT+AGG + chr1_2:14500258-14500277 Msa0058240:intron 35.0%
! CACAAGGTATCTGTGTTAAA+TGG + chr1_2:14500463-14500482 Msa0058240:intron 35.0%
CTTAACACAGATATCTTGTG+AGG - chr1_2:14500645-14500664 None:intergenic 35.0%
CACAAGATATCTGTGTTAAG+TGG + chr1_2:14500645-14500664 Msa0058240:intron 35.0%
! ATTTTATGGGTGGAGCATAA+TGG - chr1_2:14500850-14500869 None:intergenic 35.0%
! TGTCGATTGCTTGTTGAATT+AGG - chr1_2:14500896-14500915 None:intergenic 35.0%
AAGTACACAGTGTGATAACA+AGG + chr1_2:14500924-14500943 Msa0058240:intron 35.0%
GTATATAACAGACTTGGCAT+TGG + chr1_2:14501111-14501130 Msa0058240:intron 35.0%
!! GAAATGACTTTGAAACTGGT+CGG + chr1_2:14501256-14501275 Msa0058240:intron 35.0%
ATCCTCGGAATTCACTTAAT+AGG - chr1_2:14501489-14501508 None:intergenic 35.0%
TGATTGCTACTAGAGGATTA+AGG + chr1_2:14501510-14501529 Msa0058240:intron 35.0%
! TCCTAAGTTTTTGTGAAGCA+GGG + chr1_2:14501546-14501565 Msa0058240:intron 35.0%
!!! GATGTTTTATTGGAGGTACT+TGG + chr1_2:14501579-14501598 Msa0058240:intron 35.0%
AAAACATACATATACGACCC+TGG - chr1_2:14501803-14501822 None:intergenic 35.0%
! TTTTCCTGCCCTTTTTCTAT+TGG + chr1_2:14501819-14501838 Msa0058240:intron 35.0%
! TTAAACGATTTTGGGCTATG+GGG + chr1_2:14501950-14501969 Msa0058240:intron 35.0%
AAAAACATCCACCAATAGTC+TGG - chr1_2:14502024-14502043 None:intergenic 35.0%
CCTCCACAAAAACATTAACA+TGG - chr1_2:14502114-14502133 None:intergenic 35.0%
!! CCATGTTAATGTTTTTGTGG+AGG + chr1_2:14502111-14502130 Msa0058240:intron 35.0%
! GTTTTTGTGGAGGTTAGATT+TGG + chr1_2:14502121-14502140 Msa0058240:intron 35.0%
!! TAGGAAAATAAGGTCGGTTT+TGG - chr1_2:14502292-14502311 None:intergenic 35.0%
!!! AAAACCGACCTTATTTTCCT+AGG + chr1_2:14502291-14502310 Msa0058240:intron 35.0%
CATTTCAGCCTAGGAAAATA+AGG - chr1_2:14502302-14502321 None:intergenic 35.0%
GAAATGAAAAGACCTGTCAT+TGG + chr1_2:14502316-14502335 Msa0058240:intron 35.0%
! AATCTCTTTTCCATTGCTGT+TGG + chr1_2:14502432-14502451 Msa0058240:intron 35.0%
TATGAAATCACCAACAGCAA+TGG - chr1_2:14502445-14502464 None:intergenic 35.0%
TAAATTAGAGGGGGATATGA+AGG - chr1_2:14502469-14502488 None:intergenic 35.0%
!!! TCAATGGTGCTACCATTTTA+AGG - chr1_2:14502827-14502846 None:intergenic 35.0%
CAAACAGACAAGAATCTCAA+TGG - chr1_2:14502843-14502862 None:intergenic 35.0%
ATAGCTCCTAGATTCACTTT+CGG - chr1_2:14502947-14502966 None:intergenic 35.0%
!! AGGAGCTATAATTTGCTTCA+TGG + chr1_2:14502958-14502977 Msa0058240:intron 35.0%
TCTCCCATACAATGTAGTTT+GGG - chr1_2:14503637-14503656 None:intergenic 35.0%
ATCTCCCATACAATGTAGTT+TGG - chr1_2:14503638-14503657 None:intergenic 35.0%
AACTACATTGTATGGGAGAT+TGG + chr1_2:14503638-14503657 Msa0058240:intron 35.0%
GTGTTTAAAAGTAAGTCCGT+AGG + chr1_2:14503772-14503791 Msa0058240:intron 35.0%
TTTCTATAGCATACAGGGAT+TGG + chr1_2:14503905-14503924 Msa0058240:intron 35.0%
!!! GTTTTTTAGGTCAAGCTGAA+TGG + chr1_2:14504034-14504053 Msa0058240:intron 35.0%
GGAATTTCATATGTCTCAGA+TGG - chr1_2:14504064-14504083 None:intergenic 35.0%
TTTGCATCAGGATTCAATAG+CGG - chr1_2:14504151-14504170 None:intergenic 35.0%
! TTTGAAACTCTCTTTGCATC+AGG - chr1_2:14504163-14504182 None:intergenic 35.0%
CTGTGGATTTATATGAAGGA+AGG - chr1_2:14504248-14504267 None:intergenic 35.0%
CTTCCTTCATATAAATCCAC+AGG + chr1_2:14504246-14504265 Msa0058240:intron 35.0%
TTCCCTGTGGATTTATATGA+AGG - chr1_2:14504252-14504271 None:intergenic 35.0%
TTACTTGAATTTCTTCCCTG+TGG - chr1_2:14504265-14504284 None:intergenic 35.0%
ATAGTTTGAGTATGAACGTG+TGG + chr1_2:14504373-14504392 Msa0058240:intron 35.0%
TAGTTTGAGTATGAACGTGT+GGG + chr1_2:14504374-14504393 Msa0058240:intron 35.0%
CATTATTGGAAAAAGGGAAG+GGG + chr1_2:14504595-14504614 Msa0058240:intron 35.0%
ATTATTGGAAAAAGGGAAGG+GGG + chr1_2:14504596-14504615 Msa0058240:intron 35.0%
! AATAAACAGCTGGGATTAGT+TGG - chr1_2:14504814-14504833 None:intergenic 35.0%
TATGGGGAAAATAAACAGCT+GGG - chr1_2:14504823-14504842 None:intergenic 35.0%
TTATGGGGAAAATAAACAGC+TGG - chr1_2:14504824-14504843 None:intergenic 35.0%
AATTAGGCGAAGGTAAGAAA+TGG - chr1_2:14504873-14504892 None:intergenic 35.0%
TGAAAATTGGAGAGAAATGG+TGG - chr1_2:14504924-14504943 None:intergenic 35.0%
GAGTGAAAATTGGAGAGAAA+TGG - chr1_2:14504927-14504946 None:intergenic 35.0%
!!! GATTCCGTTGTTTTGTTTGT+AGG + chr1_2:14505073-14505092 Msa0058240:intron 35.0%
GAGACCTACAAACAAAACAA+CGG - chr1_2:14505080-14505099 None:intergenic 35.0%
!! ATGATCGTTTTTCCATGTGT+TGG + chr1_2:14505121-14505140 Msa0058240:exon 35.0%
TCGAATTCAATTGGTGAGAT+CGG + chr1_2:14505256-14505275 Msa0058240:three_prime_UTR 35.0%
!! TTTTTGATTGAGAGAGAGAG+AGG + chr1_2:14505282-14505301 Msa0058240:three_prime_UTR 35.0%
! TGCCGATTGATTGTTGAATT+AGG - chr1_2:14505594-14505613 None:intergenic 35.0%
TGAAAAATTGCACAACACAG+TGG - chr1_2:14505658-14505677 None:intergenic 35.0%
TAAATATGATATGTGGACGG+AGG + chr1_2:14505989-14506008 Msa0058240:three_prime_UTR 35.0%
AATCATTTATCTTGCCGAAG+AGG + chr1_2:14506421-14506440 Msa0058240:three_prime_UTR 35.0%
TATACGTATCACAGTTCAAG+TGG - chr1_2:14506509-14506528 None:intergenic 35.0%
GTCTGTTATAAGCTGTTTGT+TGG + chr1_2:14506671-14506690 Msa0058240:three_prime_UTR 35.0%
! CTGTTTGTTGGACTTGTAAT+TGG + chr1_2:14506683-14506702 Msa0058240:three_prime_UTR 35.0%
ACTTGTAATTGGGTTTCCTT+TGG + chr1_2:14499976-14499995 Msa0058240:five_prime_UTR 35.0%
TCCATTTGTATAAGATGCCA+AGG + chr1_2:14506740-14506759 Msa0058240:three_prime_UTR 35.0%
TCCTTGGCATCTTATACAAA+TGG - chr1_2:14506744-14506763 None:intergenic 35.0%
! AGTTCATTCGATGCTTTTGT+TGG + chr1_2:14506985-14507004 Msa0058240:three_prime_UTR 35.0%
ACTCTCTTTGCAGAATTTGT+TGG + chr1_2:14507085-14507104 Msa0058240:intron 35.0%
! CACAAGGTATCTGTGTTAAA+TGG + chr1_2:14500463-14500482 Msa0058240:intron 35.0%
GGAGCATAATAGTAGAGTAA+AGG - chr1_2:14507596-14507615 None:intergenic 35.0%
! TGTCGATTGCTTGTTGAATT+AGG - chr1_2:14500896-14500915 None:intergenic 35.0%
! TGCGGATTGCTTGTTGAATT+AGG - chr1_2:14499373-14499392 None:intergenic 40.0%
CACAAACACTGAAACACCTA+TGG + chr1_2:14499461-14499480 Msa0058240:five_prime_UTR 40.0%
ATGCTATAACGCCACAATAG+TGG - chr1_2:14499659-14499678 None:intergenic 40.0%
AATTCGACTGTGCAGATTCA+TGG - chr1_2:14499747-14499766 None:intergenic 40.0%
ATGAATCTGCACAGTCGAAT+TGG + chr1_2:14499746-14499765 Msa0058240:five_prime_UTR 40.0%
TGTCAACATGAAATGGCAGT+TGG + chr1_2:14499908-14499927 Msa0058240:five_prime_UTR 40.0%
GTCAACATGAAATGGCAGTT+GGG + chr1_2:14499909-14499928 Msa0058240:five_prime_UTR 40.0%
TAAGCTCTATGGCACCTTAT+TGG - chr1_2:14500026-14500045 None:intergenic 40.0%
TCTTCAGGAAGTAAGCTCTA+TGG - chr1_2:14500037-14500056 None:intergenic 40.0%
TACAACAATCTGCACTCTTC+AGG - chr1_2:14500052-14500071 None:intergenic 40.0%
TCTCTGCTTCAGAAAACTGT+AGG - chr1_2:14500229-14500248 None:intergenic 40.0%
!!! ACAGTTTTCTGAAGCAGAGA+AGG + chr1_2:14500229-14500248 Msa0058240:five_prime_UTR 40.0%
CTTTATCAAATGCCATGAGC+CGG - chr1_2:14500306-14500325 None:intergenic 40.0%
!! CTCTTTGCAGAATTTGTTGG+CGG + chr1_2:14500350-14500369 Msa0058240:intron 40.0%
AAATGGATCTTTGCCATGTC+AGG + chr1_2:14500480-14500499 Msa0058240:intron 40.0%
! AAGTGGATCTTTGCTATGTC+AGG + chr1_2:14500662-14500681 Msa0058240:intron 40.0%
!!! TTTGTTTTGAGAGGGGAGAT+AGG + chr1_2:14500732-14500751 Msa0058240:intron 40.0%
! GGGACATTTTCTTTTATCCC+CGG + chr1_2:14500759-14500778 Msa0058240:intron 40.0%
ACAACAAGACACAACAGAGA+GGG - chr1_2:14500793-14500812 None:intergenic 40.0%
AACAACAAGACACAACAGAG+AGG - chr1_2:14500794-14500813 None:intergenic 40.0%
GCTCCACCCATAAAATTACA+AGG + chr1_2:14500854-14500873 Msa0058240:intron 40.0%
CAGTGTGATAACAAGGTACA+TGG + chr1_2:14500931-14500950 Msa0058240:intron 40.0%
TCAGAGTTTAATTGCAGCCA+TGG - chr1_2:14501040-14501059 None:intergenic 40.0%
TCATCCAAATTAAGCGACTG+AGG + chr1_2:14501135-14501154 Msa0058240:intron 40.0%
! AAGTGCCAGTTGTTTGAAAC+CGG + chr1_2:14501298-14501317 Msa0058240:intron 40.0%
TGCTAGTTGGACTTGTGATT+GGG + chr1_2:14501347-14501366 Msa0058240:intron 40.0%
! TGTGATTGGGCTTTTTGTGA+TGG + chr1_2:14501360-14501379 Msa0058240:intron 40.0%
! GTGATTGGGCTTTTTGTGAT+GGG + chr1_2:14501361-14501380 Msa0058240:intron 40.0%
AGTTGTGCAGTTTGTACTAC+TGG + chr1_2:14501437-14501456 Msa0058240:intron 40.0%
GTCCTATTAAGTGAATTCCG+AGG + chr1_2:14501484-14501503 Msa0058240:intron 40.0%
TCTAGTAGCAATCAGATCCT+CGG - chr1_2:14501504-14501523 None:intergenic 40.0%
! GTCCTAAGTTTTTGTGAAGC+AGG + chr1_2:14501545-14501564 Msa0058240:intron 40.0%
TCCCTGCTTCACAAAAACTT+AGG - chr1_2:14501550-14501569 None:intergenic 40.0%
! TAAGTTTTTGTGAAGCAGGG+AGG + chr1_2:14501549-14501568 Msa0058240:intron 40.0%
! AAGTTTTTGTGAAGCAGGGA+GGG + chr1_2:14501550-14501569 Msa0058240:intron 40.0%
GGCTTGATAGAAACACTAGT+AGG - chr1_2:14501629-14501648 None:intergenic 40.0%
ATGACCAATAGAAAAAGGGC+AGG - chr1_2:14501826-14501845 None:intergenic 40.0%
! TGCCCTTTTTCTATTGGTCA+TGG + chr1_2:14501825-14501844 Msa0058240:intron 40.0%
!! CTAGGTTGTAATTTGCTCGA+AGG + chr1_2:14501882-14501901 Msa0058240:intron 40.0%
GAGATATTCCAGACTATTGG+TGG + chr1_2:14502013-14502032 Msa0058240:intron 40.0%
!! GGTGGATGTTTTTATAGCCT+TGG + chr1_2:14502031-14502050 Msa0058240:intron 40.0%
GTTCTCAGCAATAATGACCA+AGG - chr1_2:14502051-14502070 None:intergenic 40.0%
GGTCATTATTGCTGAGAACA+AGG + chr1_2:14502052-14502071 Msa0058240:intron 40.0%
TCAGCCTAGGAAAATAAGGT+CGG - chr1_2:14502298-14502317 None:intergenic 40.0%
! AGGTCTTTTCATTTCAGCCT+AGG - chr1_2:14502311-14502330 None:intergenic 40.0%
TATAAACGACCCCTTTAACC+CGG - chr1_2:14502398-14502417 None:intergenic 40.0%
!! AGGAAAATTTTGGCCCCTTT+AGG + chr1_2:14502697-14502716 Msa0058240:intron 40.0%
TATTTAACCCTCTGGTCTGA+TGG + chr1_2:14503585-14503604 Msa0058240:intron 40.0%
ATGGATCCATATGCTCATAC+TGG + chr1_2:14503604-14503623 Msa0058240:intron 40.0%
CTCATTCCAGTATGAGCATA+TGG - chr1_2:14503613-14503632 None:intergenic 40.0%
AGCCCCAAACTACATTGTAT+GGG + chr1_2:14503631-14503650 Msa0058240:intron 40.0%
CTCCCATACAATGTAGTTTG+GGG - chr1_2:14503636-14503655 None:intergenic 40.0%
TACATTGTATGGGAGATTGG+TGG + chr1_2:14503641-14503660 Msa0058240:intron 40.0%
AGCACTCATCTTCATATGTC+TGG + chr1_2:14503709-14503728 Msa0058240:intron 40.0%
ATGTCTGGTAAATCAAGTCG+TGG + chr1_2:14503724-14503743 Msa0058240:intron 40.0%
AGCACACTTTGGACATCATT+AGG - chr1_2:14504498-14504517 None:intergenic 40.0%
TTATTGGAAAAAGGGAAGGG+GGG + chr1_2:14504597-14504616 Msa0058240:intron 40.0%
! AATTGCTGCTTCCTACCAAT+GGG - chr1_2:14504638-14504657 None:intergenic 40.0%
! AAATTGCTGCTTCCTACCAA+TGG - chr1_2:14504639-14504658 None:intergenic 40.0%
TAGGCGGTGTAAACAAAAGA+AGG - chr1_2:14504762-14504781 None:intergenic 40.0%
!! CTGGGATTAGTTGGTATCAA+CGG - chr1_2:14504805-14504824 None:intergenic 40.0%
TATGTTTCACGCGGCAAATT+AGG - chr1_2:14504889-14504908 None:intergenic 40.0%
TTCACTCCTAGTTTCATCCA+TGG + chr1_2:14504940-14504959 Msa0058240:CDS 40.0%
GAAGATCCATGGATGAAACT+AGG - chr1_2:14504949-14504968 None:intergenic 40.0%
TAACTAACCTTCTTCGCTTC+AGG - chr1_2:14504997-14505016 None:intergenic 40.0%
TTCAAGTCGATGCATCTAAG+AGG - chr1_2:14505041-14505060 None:intergenic 40.0%
!!! GTTTTGTTTGTAGGTCTCAG+TGG + chr1_2:14505082-14505101 Msa0058240:intron 40.0%
CTATCAGTATCTCCAACACA+TGG - chr1_2:14505136-14505155 None:intergenic 40.0%
CATGTGTTGGAGATACTGAT+AGG + chr1_2:14505134-14505153 Msa0058240:three_prime_UTR 40.0%
AGTATGAAGAACAGACACAC+CGG + chr1_2:14505720-14505739 Msa0058240:three_prime_UTR 40.0%
! GGTCTTATAAATAGGGACAG+AGG - chr1_2:14505832-14505851 None:intergenic 40.0%
TAGTCAAATAGCCGCTATTG+TGG + chr1_2:14506292-14506311 Msa0058240:three_prime_UTR 40.0%
ATGCTATAACGCCACAATAG+CGG - chr1_2:14499659-14499678 None:intergenic 40.0%
TTGAATCTGCACAGTCGAAT+TGG + chr1_2:14506393-14506412 Msa0058240:three_prime_UTR 40.0%
CAATAAGTTAGCTGCCTCTT+CGG - chr1_2:14506438-14506457 None:intergenic 40.0%
ACAACCGTGTAGATATGTAC+TGG - chr1_2:14506569-14506588 None:intergenic 40.0%
TCTCTGCTTCAGAAAACTGT+CGG - chr1_2:14500229-14500248 None:intergenic 40.0%
! TCATTCGATGCTTTTGTTGG+AGG + chr1_2:14506988-14507007 Msa0058240:three_prime_UTR 40.0%
!! GATGCTTTTGTTGGAGGTAT+AGG + chr1_2:14506994-14507013 Msa0058240:intron 40.0%
!! CTCTTTGCAGAATTTGTTGG+CGG + chr1_2:14500350-14500369 Msa0058240:intron 40.0%
AAATGGATCTTTGCCATGTC+AGG + chr1_2:14500480-14500499 Msa0058240:intron 40.0%
!!! TTTGTTTTGAGAGGGGAGAT+AGG + chr1_2:14500732-14500751 Msa0058240:intron 40.0%
GCTCCACACATAAAATCACA+AGG + chr1_2:14507611-14507630 Msa0058240:three_prime_UTR 40.0%
! TTGTTCTAAACAGCGGATCC+TGG - chr1_2:14499623-14499642 None:intergenic 45.0%
!! TTTGTTGGCTCATGACCACT+TGG + chr1_2:14499773-14499792 Msa0058240:five_prime_UTR 45.0%
! AAATGGCAGTTGGGAAGTAC+TGG + chr1_2:14499918-14499937 Msa0058240:five_prime_UTR 45.0%
TTGGGTTTCCTTTGGATGTG+TGG + chr1_2:14499984-14500003 Msa0058240:five_prime_UTR 45.0%
! ATATCAAGCATTGTGCGACC+TGG + chr1_2:14500123-14500142 Msa0058240:five_prime_UTR 45.0%
TTCATCCTCTAGCAGCAATC+AGG - chr1_2:14500178-14500197 None:intergenic 45.0%
TGATTGCTGCTAGAGGATGA+AGG + chr1_2:14500177-14500196 Msa0058240:five_prime_UTR 45.0%
TGCTAGAGGATGAAGGTTTC+AGG + chr1_2:14500184-14500203 Msa0058240:five_prime_UTR 45.0%
GCTAGAGGATGAAGGTTTCA+GGG + chr1_2:14500185-14500204 Msa0058240:five_prime_UTR 45.0%
ATTGGTGAGATCAGAAGTCG+TGG + chr1_2:14500576-14500595 Msa0058240:intron 45.0%
TTTGAGAGGGGAGATAGGTT+TGG + chr1_2:14500737-14500756 Msa0058240:intron 45.0%
TTGAGAGGGGAGATAGGTTT+GGG + chr1_2:14500738-14500757 Msa0058240:intron 45.0%
GCTTCCTCAGTCGCTTAATT+TGG - chr1_2:14501142-14501161 None:intergenic 45.0%
! AGTGCCAGTTGTTTGAAACC+GGG + chr1_2:14501299-14501318 Msa0058240:intron 45.0%
GTGCTAGTTGGACTTGTGAT+TGG + chr1_2:14501346-14501365 Msa0058240:intron 45.0%
GTGCAGTTTGTACTACTGGT+CGG + chr1_2:14501441-14501460 Msa0058240:intron 45.0%
GACGCATGCGAAGTATGAAA+AGG - chr1_2:14501467-14501486 None:intergenic 45.0%
GAGGATCTGATTGCTACTAG+AGG + chr1_2:14501503-14501522 Msa0058240:intron 45.0%
ATAAACGACCCCTTTAACCC+GGG - chr1_2:14502397-14502416 None:intergenic 45.0%
CCTCAATTGCTGCTATTCTG+AGG - chr1_2:14502916-14502935 None:intergenic 45.0%
CCTCAGAATAGCAGCAATTG+AGG + chr1_2:14502913-14502932 Msa0058240:intron 45.0%
CATGCACCGAAAGTGAATCT+AGG + chr1_2:14502938-14502957 Msa0058240:intron 45.0%
CTGATATTTACTGGAGCCCT+GGG - chr1_2:14503387-14503406 None:intergenic 45.0%
TCTGATATTTACTGGAGCCC+TGG - chr1_2:14503388-14503407 None:intergenic 45.0%
GGGCTCCAGTAAATATCAGA+TGG + chr1_2:14503388-14503407 Msa0058240:intron 45.0%
GGCTGCCATCTGATATTTAC+TGG - chr1_2:14503396-14503415 None:intergenic 45.0%
TATGGATCCATCAGACCAGA+GGG - chr1_2:14503595-14503614 None:intergenic 45.0%
ATATGGATCCATCAGACCAG+AGG - chr1_2:14503596-14503615 None:intergenic 45.0%
GAGCCCCAAACTACATTGTA+TGG + chr1_2:14503630-14503649 Msa0058240:intron 45.0%
GATTGACAAAAGTCGGATCC+AGG - chr1_2:14503677-14503696 None:intergenic 45.0%
ATCAAGTCGTGGTAGCACAT+TGG + chr1_2:14503735-14503754 Msa0058240:intron 45.0%
CACATTGGAAAGGCCTAGAT+CGG + chr1_2:14503750-14503769 Msa0058240:intron 45.0%
TGATGTCCAAAGTGTGCTTC+AGG + chr1_2:14504500-14504519 Msa0058240:intron 45.0%
TGAACACCTGAAGCACACTT+TGG - chr1_2:14504509-14504528 None:intergenic 45.0%
ATCGAGATCTCGAAGATCCA+TGG - chr1_2:14504960-14504979 None:intergenic 45.0%
GAATGGATCTTTGCCAAGTC+AGG + chr1_2:14505339-14505358 Msa0058240:three_prime_UTR 45.0%
TTGAGAGGGAAGAGAGAGAT+AGG + chr1_2:14505415-14505434 Msa0058240:three_prime_UTR 45.0%
AGGGAAGAGAGAGATAGGTT+TGG + chr1_2:14505420-14505439 Msa0058240:three_prime_UTR 45.0%
GGGAAGAGAGAGATAGGTTT+GGG + chr1_2:14505421-14505440 Msa0058240:three_prime_UTR 45.0%
GGAAGAGAGAGATAGGTTTG+GGG + chr1_2:14505422-14505441 Msa0058240:three_prime_UTR 45.0%
ACAGAGGGAAAGATAGAGAG+AGG - chr1_2:14505465-14505484 None:intergenic 45.0%
GTGATGCGTGCACTATTACA+AGG + chr1_2:14505552-14505571 Msa0058240:three_prime_UTR 45.0%
AATCAATCGGCAACACGTTG+AGG + chr1_2:14505602-14505621 Msa0058240:three_prime_UTR 45.0%
!! ATCACAAGTGTTGGTGTCAG+TGG + chr1_2:14505769-14505788 Msa0058240:three_prime_UTR 45.0%
TGTAGTGACCCTTCTGATAG+AGG - chr1_2:14505795-14505814 None:intergenic 45.0%
GTGTCAAATAGCGGCTATTG+TGG + chr1_2:14506203-14506222 Msa0058240:three_prime_UTR 45.0%
GAGTTGTCAGTTGCAGATAG+AGG - chr1_2:14506357-14506376 None:intergenic 45.0%
CGAAGAGGCAGCTAACTTAT+TGG + chr1_2:14506436-14506455 Msa0058240:three_prime_UTR 45.0%
TCACAGTTCAAGTGGTCATG+AGG - chr1_2:14506501-14506520 None:intergenic 45.0%
TGCCTACATGAAATGTCAGC+TGG + chr1_2:14506626-14506645 Msa0058240:three_prime_UTR 45.0%
GTCCAGCTGACATTTCATGT+AGG - chr1_2:14506631-14506650 None:intergenic 45.0%
AAATGTCAGCTGGACAGTAC+TGG + chr1_2:14506636-14506655 Msa0058240:three_prime_UTR 45.0%
!! GGACAGTACTGGTTGACATT+TGG + chr1_2:14506647-14506666 Msa0058240:three_prime_UTR 45.0%
TTGGGTTTCCTTTGGATGTG+TGG + chr1_2:14499984-14500003 Msa0058240:five_prime_UTR 45.0%
TCTTCAGCTAGTAAGCTCCT+TGG - chr1_2:14506760-14506779 None:intergenic 45.0%
AGCTTACTAGCTGAAGAGTG+CGG + chr1_2:14506763-14506782 Msa0058240:three_prime_UTR 45.0%
TTCATCCACTAGCAGCAATC+AGG - chr1_2:14506914-14506933 None:intergenic 45.0%
! TGATTGCTGCTAGTGGATGA+AGG + chr1_2:14506913-14506932 Msa0058240:three_prime_UTR 45.0%
! TGCTAGTGGATGAAGGTTTC+AGG + chr1_2:14506920-14506939 Msa0058240:three_prime_UTR 45.0%
CTCTGCTTCAGAAAACTGTC+GGG - chr1_2:14506964-14506983 None:intergenic 45.0%
TCCCAAATGACAGTTACAGC+TGG + chr1_2:14507022-14507041 Msa0058240:intron 45.0%
! GCCAGCTGTAACTGTCATTT+GGG - chr1_2:14507026-14507045 None:intergenic 45.0%
AGCCAGCTGTAACTGTCATT+TGG - chr1_2:14507027-14507046 None:intergenic 45.0%
TTTGAGAGGGGAGATAGGTT+TGG + chr1_2:14500737-14500756 Msa0058240:intron 45.0%
TTGAGAGGGGAGATAGGTTT+GGG + chr1_2:14500738-14500757 Msa0058240:intron 45.0%
!!! AATTTTTTTTTTTTTTTTAG+GGG + chr1_2:14503290-14503309 Msa0058240:intron 5.0%
AAGCAATCCGCAACACATCG+AGG + chr1_2:14499381-14499400 Msa0058240:five_prime_UTR 50.0%
ATCCGCAACACATCGAGGTA+TGG + chr1_2:14499386-14499405 Msa0058240:five_prime_UTR 50.0%
AGCCATACCTCGATGTGTTG+CGG - chr1_2:14499391-14499410 None:intergenic 50.0%
GAAGACCTGATTGCTGCTAG+AGG + chr1_2:14500170-14500189 Msa0058240:five_prime_UTR 50.0%
CATCCCGAATGAGTTACAGC+CGG + chr1_2:14500284-14500303 Msa0058240:intron 50.0%
TGAGCCGGCTGTAACTCATT+CGG - chr1_2:14500291-14500310 None:intergenic 50.0%
! AATGAGTTACAGCCGGCTCA+TGG + chr1_2:14500291-14500310 Msa0058240:intron 50.0%
TGAGAGGGGAGATAGGTTTG+GGG + chr1_2:14500739-14500758 Msa0058240:intron 50.0%
AGACACAACAGAGAGGGAGA+GGG - chr1_2:14500787-14500806 None:intergenic 50.0%
AAGACACAACAGAGAGGGAG+AGG - chr1_2:14500788-14500807 None:intergenic 50.0%
TGCTAGCTGACGATTGCAGA+TGG + chr1_2:14501404-14501423 Msa0058240:intron 50.0%
GTCGGTAGAGTTGCATGCTT+TGG + chr1_2:14502161-14502180 Msa0058240:intron 50.0%
! TCAGGGAGTCTTGTCGATGA+CGG + chr1_2:14502363-14502382 Msa0058240:intron 50.0%
TAAACGACCCCTTTAACCCG+GGG - chr1_2:14502396-14502415 None:intergenic 50.0%
ATACTTAGCAGCCAGTTCCC+AGG + chr1_2:14503367-14503386 Msa0058240:intron 50.0%
TACTTAGCAGCCAGTTCCCA+GGG + chr1_2:14503368-14503387 Msa0058240:intron 50.0%
TGACAAAAGTCGGATCCAGG+TGG - chr1_2:14503674-14503693 None:intergenic 50.0%
GTCGTGGTAGCACATTGGAA+AGG + chr1_2:14503740-14503759 Msa0058240:intron 50.0%
TTCTTCGCTTCAGGATCAGG+TGG - chr1_2:14504988-14505007 None:intergenic 50.0%
ACCTGATCCTGAAGCGAAGA+AGG + chr1_2:14504987-14505006 Msa0058240:CDS 50.0%
ACCTTCTTCGCTTCAGGATC+AGG - chr1_2:14504991-14505010 None:intergenic 50.0%
GAGGGAAAGATAGAGAGAGG+CGG - chr1_2:14505462-14505481 None:intergenic 50.0%
GGCAAGACACACACAACAGA+GGG - chr1_2:14505480-14505499 None:intergenic 50.0%
AGGCAAGACACACACAACAG+AGG - chr1_2:14505481-14505500 None:intergenic 50.0%
ATCGGCAACACGTTGAGGTA+TGG + chr1_2:14505607-14505626 Msa0058240:three_prime_UTR 50.0%
TGTCAGTGGCCTCTATCAGA+AGG + chr1_2:14505783-14505802 Msa0058240:three_prime_UTR 50.0%
GTCAGTGGCCTCTATCAGAA+GGG + chr1_2:14505784-14505803 Msa0058240:three_prime_UTR 50.0%
GAAGACCTGATTGCTGCTAG+TGG + chr1_2:14500170-14500189 Msa0058240:five_prime_UTR 50.0%
GTGGATGAAGGTTTCAGGAC+TGG + chr1_2:14506925-14506944 Msa0058240:three_prime_UTR 50.0%
! TGACAGTTACAGCTGGCTCA+TGG + chr1_2:14507029-14507048 Msa0058240:intron 50.0%
ATTGCCGAGATCAGAAGTCG+TGG + chr1_2:14507132-14507151 Msa0058240:three_prime_UTR 50.0%
GCATCCACGACTTCTGATCT+CGG - chr1_2:14507139-14507158 None:intergenic 50.0%
AAATGGATCTTCGCCATGCC+AGG + chr1_2:14507209-14507228 Msa0058240:three_prime_UTR 50.0%
ATTGGTGGGATCAGAAGTCG+AGG + chr1_2:14507305-14507324 Msa0058240:three_prime_UTR 50.0%
TGAGAGGGGAGATAGGTTTG+GGG + chr1_2:14500739-14500758 Msa0058240:intron 50.0%
ACACACGACAGAGAGGGAAA+GGG - chr1_2:14507516-14507535 None:intergenic 50.0%
GACAAGACACACGACAGAGA+GGG - chr1_2:14507522-14507541 None:intergenic 50.0%
AGACAAGACACACGACAGAG+AGG - chr1_2:14507523-14507542 None:intergenic 50.0%
!! GGCAGTTGGGAAGTACTGGT+TGG + chr1_2:14499922-14499941 Msa0058240:five_prime_UTR 55.0%
GAGGATGAAGGTTTCAGGGC+TGG + chr1_2:14500189-14500208 Msa0058240:five_prime_UTR 55.0%
GAGCCGGCTGTAACTCATTC+GGG - chr1_2:14500290-14500309 None:intergenic 55.0%
CCATGCAAGCACACCTGACA+TGG - chr1_2:14500496-14500515 None:intergenic 55.0%
CCATGTCAGGTGTGCTTGCA+TGG + chr1_2:14500493-14500512 Msa0058240:intron 55.0%
CTATGTCAGGTGCGCTTGCA+TGG + chr1_2:14500675-14500694 Msa0058240:intron 55.0%
! GCCAGTTGTTTGAAACCGGG+CGG + chr1_2:14501302-14501321 Msa0058240:intron 55.0%
! CAGGGAGTCTTGTCGATGAC+GGG + chr1_2:14502364-14502383 Msa0058240:intron 55.0%
GGTTGCTTCCCCGGGTTAAA+GGG + chr1_2:14502385-14502404 Msa0058240:intron 55.0%
GTTGCTTCCCCGGGTTAAAG+GGG + chr1_2:14502386-14502405 Msa0058240:intron 55.0%
TTTACTGGAGCCCTGGGAAC+TGG - chr1_2:14503381-14503400 None:intergenic 55.0%
! ATTGGTGGTTCGACTCCACC+TGG + chr1_2:14503656-14503675 Msa0058240:intron 55.0%
TCACGCGGCAAATTAGGCGA+AGG - chr1_2:14504883-14504902 None:intergenic 55.0%
! CTACCAAAGGTGTGCGTGTC+CGG - chr1_2:14505742-14505761 None:intergenic 55.0%
GACACACGACAGAGAGGGAA+AGG - chr1_2:14507517-14507536 None:intergenic 55.0%
GTCAGGTGTGCTTGCATGGC+AGG + chr1_2:14500497-14500516 Msa0058240:intron 60.0%
AACAGAGAGGGAGAGGGAGC+CGG - chr1_2:14500781-14500800 None:intergenic 60.0%
GCCGCCCGGTTTCAAACAAC+TGG - chr1_2:14501306-14501325 None:intergenic 60.0%
TACAACGGCTACTTGCCGCC+CGG - chr1_2:14501320-14501339 None:intergenic 60.0%
!! TCGATGACGGGTTGCTTCCC+CGG + chr1_2:14502376-14502395 Msa0058240:intron 60.0%
GGGTTGCTTCCCCGGGTTAA+AGG + chr1_2:14502384-14502403 Msa0058240:intron 60.0%
ACACCGGACACGCACACCTT+TGG + chr1_2:14505736-14505755 Msa0058240:three_prime_UTR 60.0%
CCATGCAAGCGCACCTGACA+TGG - chr1_2:14500678-14500697 None:intergenic 60.0%
CCATGTCAGGTGCGCTTGCA+TGG + chr1_2:14507404-14507423 Msa0058240:three_prime_UTR 60.0%
CAGAGAGGGAAAGGGAGGCA+GGG - chr1_2:14507508-14507527 None:intergenic 60.0%
ACAGAGAGGGAAAGGGAGGC+AGG - chr1_2:14507509-14507528 None:intergenic 60.0%
CACGACAGAGAGGGAAAGGG+AGG - chr1_2:14507513-14507532 None:intergenic 60.0%
GTCAGGTGCGCTTGCATGGC+AGG + chr1_2:14500679-14500698 Msa0058240:intron 65.0%
ACAGAGAGGGAGAGGGAGCC+GGG - chr1_2:14500780-14500799 None:intergenic 65.0%
!! CGATGACGGGTTGCTTCCCC+GGG + chr1_2:14502377-14502396 Msa0058240:intron 65.0%
CCAAGCAAGCGCGCCTGACT+TGG - chr1_2:14505355-14505374 None:intergenic 65.0%
CCAAGTCAGGCGCGCTTGCT+TGG + chr1_2:14505352-14505371 Msa0058240:three_prime_UTR 65.0%
CCATGCAAGCACGCCTGGCA+TGG - chr1_2:14507225-14507244 None:intergenic 65.0%
CCATGCCAGGCGTGCTTGCA+TGG + chr1_2:14507222-14507241 Msa0058240:three_prime_UTR 65.0%
ACCTGCCATGCAAGCACGCC+TGG - chr1_2:14507230-14507249 None:intergenic 65.0%
GTCAGGTGCGCTTGCATGGC+AGG + chr1_2:14500679-14500698 Msa0058240:intron 65.0%
CAGAGAGGGAGAGGGAGCCG+GGG - chr1_2:14500779-14500798 None:intergenic 70.0%
GCCAGGCGTGCTTGCATGGC+AGG + chr1_2:14507226-14507245 Msa0058240:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 14499363 14507688 14499363 ID=Msa0058240;Name=Msa0058240
chr1_2 mRNA 14499363 14507688 14499363 ID=Msa0058240-mRNA-1;Parent=Msa0058240;Name=Msa0058240-mRNA-1;_AED=0.25;_eAED=0.25;_QI=896|0.75|0.6|1|0.5|0.4|5|2476|71
chr1_2 exon 14499363 14500273 14499363 ID=Msa0058240-mRNA-1:exon:5876;Parent=Msa0058240-mRNA-1
chr1_2 exon 14500360 14500431 14500360 ID=Msa0058240-mRNA-1:exon:5877;Parent=Msa0058240-mRNA-1
chr1_2 exon 14504910 14505008 14504910 ID=Msa0058240-mRNA-1:exon:5878;Parent=Msa0058240-mRNA-1
chr1_2 exon 14505095 14507009 14505095 ID=Msa0058240-mRNA-1:exon:5879;Parent=Msa0058240-mRNA-1
chr1_2 exon 14507098 14507688 14507098 ID=Msa0058240-mRNA-1:exon:5880;Parent=Msa0058240-mRNA-1
chr1_2 five_prime_UTR 14499363 14500258 14499363 ID=Msa0058240-mRNA-1:five_prime_utr;Parent=Msa0058240-mRNA-1
chr1_2 CDS 14500259 14500273 14500259 ID=Msa0058240-mRNA-1:cds;Parent=Msa0058240-mRNA-1
chr1_2 CDS 14500360 14500431 14500360 ID=Msa0058240-mRNA-1:cds;Parent=Msa0058240-mRNA-1
chr1_2 CDS 14504910 14505008 14504910 ID=Msa0058240-mRNA-1:cds;Parent=Msa0058240-mRNA-1
chr1_2 CDS 14505095 14505124 14505095 ID=Msa0058240-mRNA-1:cds;Parent=Msa0058240-mRNA-1
chr1_2 three_prime_UTR 14505125 14507009 14505125 ID=Msa0058240-mRNA-1:three_prime_utr;Parent=Msa0058240-mRNA-1
chr1_2 three_prime_UTR 14507098 14507688 14507098 ID=Msa0058240-mRNA-1:three_prime_utr;Parent=Msa0058240-mRNA-1
Gene Sequence

>Msa0058240

ATGCTTTTGTTGGAGAATTTGTTGGCGGTATATGTTCGTGTGAATTTCAATTGGCGAGATAAGAAGTCATCGATGTGTGACATACATCATTATTATCACCACCATTTCTCTCCAATTTTCACTCCTAGTTTCATCCATGGATCTTCGAGATCTCGATTTCGTCCACCTGATCCTGAAGCGAAGAAGGTCTCAGTGGATCTACTGATGAATCGATGA
Protein sequence

>Msa0058240

MLLLENLLAVYVRVNFNWRDKKSSMCDIHHYYHHHFSPIFTPSFIHGSSRSRFRPPDPEAKKVSVDLLMNR*