AlfalfaGEDB | Msa0063670

M. sativa cultivar zhongmu-4 / Msa0063670

KEGG: K09843
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006066 GO:0006082 GO:0006629 GO:0006694 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009687 GO:0009791 GO:0009987 GO:0010114 GO:0010154 GO:0010162 GO:0010268 GO:0010295 GO:0010431 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0042445 GO:0042446 GO:0042592 GO:0043288 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048838 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0097438 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902644
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063670	sp\|O81077\|ABAH2_ARATH	67.265	446	143	3	31	474	36	480	0.0	615

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063670	A0A072VFZ6	96.444	478	17	0	1	478	1	478	0.0	962

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0063670	Msa0107880	0.826574	2.516988e-54	-8.615850e-47
Msa0063670	Msa0153990	0.836336	9.933707e-57	-8.615850e-47
Msa0063670	Msa0440110	0.812615	3.878061e-51	-8.615850e-47
Msa0063670	Msa0502910	0.802169	6.374510e-49	-8.615850e-47
Msa0063670	Msa0540840	0.806337	8.639778e-50	-8.615850e-47
Msa0063670	Msa0641020	0.805539	1.271505e-49	-8.615850e-47
Msa0063670	Msa1073500	0.825540	4.434908e-54	-8.615850e-47
Msa0063670	Msa1161760	0.806802	6.893231e-50	-8.615850e-47
Msa0063670	Msa1246560	0.806923	6.497127e-50	-8.615850e-47
Msa0063670	Msa1285830	0.802611	5.168485e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063670	MtrunA17_Chr1g0164371	96.444	478	17	0	1	478	1	478	0.0	962
Msa0063670	MtrunA17_Chr5g0408181	56.009	466	191	6	20	477	5	464	0.0	528
Msa0063670	MtrunA17_Chr4g0044851	56.600	447	190	3	29	472	21	466	0.0	520
Msa0063670	MtrunA17_Chr8g0369791	57.798	436	176	4	44	477	37	466	0.0	518
Msa0063670	MtrunA17_Chr4g0044841	56.250	448	191	4	29	472	22	468	2.43e-178	508
Msa0063670	MtrunA17_Chr1g0153371	52.677	467	213	5	12	472	1	465	2.49e-176	503
Msa0063670	MtrunA17_Chr7g0219961	32.548	467	296	9	18	474	4	461	8.77e-81	258
Msa0063670	MtrunA17_Chr3g0107511	32.135	473	305	6	15	473	4	474	1.21e-76	248
Msa0063670	MtrunA17_Chr6g0455461	30.753	465	308	9	18	474	4	462	2.44e-76	246
Msa0063670	MtrunA17_Chr5g0400411	34.821	448	276	9	40	473	41	486	1.84e-75	245

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063670	AT2G29090.2	67.265	446	143	3	31	474	36	480	0.0	615
Msa0063670	AT2G29090.1	67.265	446	143	3	31	474	36	480	0.0	615
Msa0063670	AT5G45340.1	56.410	468	195	3	12	476	1	462	0.0	551
Msa0063670	AT4G19230.1	56.410	468	195	4	12	476	1	462	0.0	546
Msa0063670	AT3G19270.2	57.330	457	190	3	16	471	9	461	0.0	534
Msa0063670	AT2G29090.3	66.580	386	126	3	91	474	1	385	0.0	517
Msa0063670	AT5G45340.2	55.705	447	189	3	12	455	1	441	1.53e-180	513
Msa0063670	AT4G19230.2	54.957	464	199	5	12	471	1	458	3.71e-180	513
Msa0063670	AT3G19270.1	57.143	434	181	3	16	448	9	438	6.56e-176	501
Msa0063670	AT2G29090.4	63.415	287	102	3	31	315	36	321	3.12e-120	355

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Find 147 sgRNAs with CRISPR-Local

Find 513 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGCTAGGGAATGTCG+TGG	0.691578	1_2:+24277868	Msa0063670:CDS
AAAGGGTGAGATGGTGAAGG+AGG	0.557982	1_2:-24279709	None:intergenic
AAATAAGAAGCAAACTTGCT+AGG	0.490793	1_2:+24277857	Msa0063670:CDS
AAATGTTTATAAAATTGTAA+AGG	0.484394	1_2:+24283092	Msa0063670:three_prime_UTR
AACAATAAGGTGAAAGATGG+CGG	0.619078	1_2:-24274625	None:intergenic
AACATTTGTCTTTGTCTCTA+TGG	0.210879	1_2:-24274781	None:intergenic
AAGAGAATTGTATCATTGCT+TGG	0.456903	1_2:+24275697	Msa0063670:CDS
AAGAGGAGCAATATAATGAA+AGG	0.466239	1_2:-24274722	None:intergenic
AAGGCCAGCCCATTGAACCA+GGG	0.668384	1_2:-24274808	None:intergenic
AAGTGATGTGAAGAATTGCA+TGG	0.716557	1_2:-24274672	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAGGAAAATGTTTCATAGG+TGG	-	chr1_2:24274433-24274452	None:intergenic	30.0%
TGCTTAGGAAAATGTTTCAT+AGG	-	chr1_2:24274436-24274455	None:intergenic	30.0%
CTGAGAAATATGTACTATAC+AGG	-	chr1_2:24274470-24274489	None:intergenic	30.0%
TAGCTATTTATAGAGGGAAA+GGG	-	chr1_2:24274599-24274618	None:intergenic	30.0%
TTAGCTATTTATAGAGGGAA+AGG	-	chr1_2:24274600-24274619	None:intergenic	30.0%
GTTGTGTTAGCTATTTATAG+AGG	-	chr1_2:24274606-24274625	None:intergenic	30.0%
CAAAACAATAAGGTGAAAGA+TGG	-	chr1_2:24274631-24274650	None:intergenic	30.0%
GTTGAGTGTACAAAACAATA+AGG	-	chr1_2:24274641-24274660	None:intergenic	30.0%
AGAGGAGCAATATAATGAAA+GGG	-	chr1_2:24274724-24274743	None:intergenic	30.0%
AAGAGGAGCAATATAATGAA+AGG	-	chr1_2:24274725-24274744	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	24274394	24283131	24274394	ID=Msa0063670;Name=Msa0063670
chr1_2	mRNA	24274394	24283131	24274394	ID=Msa0063670-mRNA-1;Parent=Msa0063670;Name=Msa0063670-mRNA-1;_AED=0.15;_eAED=0.15;_QI=280\|1\|1\|1\|1\|1\|8\|268\|478
chr1_2	exon	24274394	24274897	24274394	ID=Msa0063670-mRNA-1:exon:8723;Parent=Msa0063670-mRNA-1
chr1_2	exon	24275202	24275520	24275202	ID=Msa0063670-mRNA-1:exon:8724;Parent=Msa0063670-mRNA-1
chr1_2	exon	24275632	24275781	24275632	ID=Msa0063670-mRNA-1:exon:8725;Parent=Msa0063670-mRNA-1
chr1_2	exon	24276254	24276505	24276254	ID=Msa0063670-mRNA-1:exon:8726;Parent=Msa0063670-mRNA-1
chr1_2	exon	24277844	24277933	24277844	ID=Msa0063670-mRNA-1:exon:8727;Parent=Msa0063670-mRNA-1
chr1_2	exon	24278955	24279140	24278955	ID=Msa0063670-mRNA-1:exon:8728;Parent=Msa0063670-mRNA-1
chr1_2	exon	24279620	24279738	24279620	ID=Msa0063670-mRNA-1:exon:8729;Parent=Msa0063670-mRNA-1
chr1_2	exon	24282767	24283131	24282767	ID=Msa0063670-mRNA-1:exon:8730;Parent=Msa0063670-mRNA-1
chr1_2	five_prime_UTR	24274394	24274673	24274394	ID=Msa0063670-mRNA-1:five_prime_utr;Parent=Msa0063670-mRNA-1
chr1_2	CDS	24274674	24274897	24274674	ID=Msa0063670-mRNA-1:cds;Parent=Msa0063670-mRNA-1
chr1_2	CDS	24275202	24275520	24275202	ID=Msa0063670-mRNA-1:cds;Parent=Msa0063670-mRNA-1
chr1_2	CDS	24275632	24275781	24275632	ID=Msa0063670-mRNA-1:cds;Parent=Msa0063670-mRNA-1
chr1_2	CDS	24276254	24276505	24276254	ID=Msa0063670-mRNA-1:cds;Parent=Msa0063670-mRNA-1
chr1_2	CDS	24277844	24277933	24277844	ID=Msa0063670-mRNA-1:cds;Parent=Msa0063670-mRNA-1
chr1_2	CDS	24278955	24279140	24278955	ID=Msa0063670-mRNA-1:cds;Parent=Msa0063670-mRNA-1
chr1_2	CDS	24279620	24279738	24279620	ID=Msa0063670-mRNA-1:cds;Parent=Msa0063670-mRNA-1
chr1_2	CDS	24282767	24282863	24282767	ID=Msa0063670-mRNA-1:cds;Parent=Msa0063670-mRNA-1
chr1_2	three_prime_UTR	24282864	24283131	24282864	ID=Msa0063670-mRNA-1:three_prime_utr;Parent=Msa0063670-mRNA-1

Gene Sequence

>Msa0063670

ATGCAATTCTTCACATCACTTGCTAATTCTTGTTTAGATTTTTCTCTCCCTTTCATTATATTGCTCCTCTTTTTTACTATCCTTCCTTTCCTTCAATGGTGGAAACACCATAGAGACAAAGACAAATGTTTACCCCCTGGTTCAATGGGCTGGCCTTACTTTGGAGAGACCCTCAAACTCTATACTCAAAACCCAAATTCTTTCTTCTCCACAAGGCAGAAAAGGTATGGAGATATATTCAAGACACACATACTAGGTTGTCCTTGTGTGATGATATCAAGTCCTGAGGCAGCTAGAGCAGTGCTTGTGACTCAAGCACATCTTTTTAAACCAACATACCCTCCAAGCAAAGAGAAGATGATAGGGCCAGAAGCTTTGTTCTTTCAACAAGGTGCATATCACTCCATGCTCAAGAAGCTAGTTCAAGCCTCTTTTTTACCTTCCACACTTAAAAACTCTGTCTCTCATGTGGACCAAATTGTACAAAAATTGGTTCCAACTTGGGCTAATAGAACCATCAACACCTTGCAAGAGATGAAAAAGTATGCTTTTGAAGTGGCTGCAAATTCAGCTTTTGGTGAAATAAAAGAGATGGAAATGGAAGAAATAAGAGAATTGTATCATTGCTTGGAGAAGGGCTACAATTCTTATCCTTTGAAGCTCCATGGAACTTCTTATTGGAAGGCATTGAAGGCAAGGAAGGTTTTGAATGAGAGTATAAGGAGGATAATAGAAAGAAGAAATGAGAGCAGGAATTATGGTGGTGGGTTGTTAGGAATTCTGTTGAGAGGCAAAGGTGATGAGAAGATGTACCAACTAACTGATTCTCAGGTGGCTGATAATATCATTGGTGTCATCTTTGCTGCACATGATACCACAGCTAGTGTTCTAACATGGGTTCTAAAGTACTTGCATGACAATGTCAATCTCTTGGAAACTGTCACAAAAGAACAAGAAGAAATAAGAAGCAAACTTGCTAGGGAATGTCGTGGACTTTCATGGGAGGATACCAGGCAGATGCCCTTCACAAGCAGGGTAATCCAAGAGACATTAAGAAGTGCAAGCATATTATCATTCACATTTAGAGAAGCAGTTAGAGATGTGGAGCTACAAGGTTACTCCATTCCAAAAGGTTGGAAAGTCCTTCCACTCTTTAGAAGTATTCATCATTCACCTCATTTCTTCCCTCAACCACACAAGTTTGACCCTTCAAGATTTGAGAATCCACCTCGACCAAACACATATATGCCATTTGGAAATGGAGTCCACTCTTGTCCTGGTAGTGAGCTTGCTAAGCTTGAGGTTCTTGTCCTCCTTCACCATCTCACCCTTTCATACAGGTGGCAAGTTGTGGGAAATGGAGATGGAATTCAATATGGTCCGTTTCCTGTGCCAAAACATGGATTACCAGTAAAGATAACTCTAAAGAAGAGTTAG

Protein sequence

>Msa0063670

MQFFTSLANSCLDFSLPFIILLLFFTILPFLQWWKHHRDKDKCLPPGSMGWPYFGETLKLYTQNPNSFFSTRQKRYGDIFKTHILGCPCVMISSPEAARAVLVTQAHLFKPTYPPSKEKMIGPEALFFQQGAYHSMLKKLVQASFLPSTLKNSVSHVDQIVQKLVPTWANRTINTLQEMKKYAFEVAANSAFGEIKEMEMEEIRELYHCLEKGYNSYPLKLHGTSYWKALKARKVLNESIRRIIERRNESRNYGGGLLGILLRGKGDEKMYQLTDSQVADNIIGVIFAAHDTTASVLTWVLKYLHDNVNLLETVTKEQEEIRSKLARECRGLSWEDTRQMPFTSRVIQETLRSASILSFTFREAVRDVELQGYSIPKGWKVLPLFRSIHHSPHFFPQPHKFDPSRFENPPRPNTYMPFGNGVHSCPGSELAKLEVLVLLHHLTLSYRWQVVGNGDGIQYGPFPVPKHGLPVKITLKKS*