AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0107880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0107880 MtrunA17_Chr1g0164371 96.025 478 19 0 1 478 1 478 0.0 879
Msa0107880 MtrunA17_Chr5g0408181 55.342 468 201 5 12 477 3 464 0.0 526
Msa0107880 MtrunA17_Chr4g0044851 57.273 440 185 2 35 472 28 466 0.0 522
Msa0107880 MtrunA17_Chr8g0369791 58.028 436 175 5 44 477 37 466 0.0 519
Msa0107880 MtrunA17_Chr4g0044841 56.916 441 186 3 35 472 29 468 9.85e-180 511
Msa0107880 MtrunA17_Chr1g0153371 52.979 470 207 6 12 472 1 465 1.48e-177 506
Msa0107880 MtrunA17_Chr7g0219961 32.762 467 295 9 18 474 4 461 1.48e-81 260
Msa0107880 MtrunA17_Chr6g0455461 30.603 464 311 8 16 474 5 462 2.50e-77 249
Msa0107880 MtrunA17_Chr3g0107511 32.135 473 305 6 15 473 4 474 5.46e-77 249
Msa0107880 MtrunA17_Chr5g0400421 32.898 459 292 10 30 473 30 487 8.01e-76 246
Msa0107880 MtrunA17_Chr5g0400411 33.833 467 292 10 22 473 22 486 1.81e-75 245
Msa0107880 MtrunA17_Chr3g0078411 29.741 464 315 8 16 474 5 462 3.79e-75 243
Msa0107880 MtrunA17_Chr2g0293421 30.803 461 301 8 21 465 19 477 5.02e-75 244
Msa0107880 MtrunA17_Chr3g0113321 29.888 445 289 9 44 473 29 465 1.27e-74 243
Msa0107880 MtrunA17_Chr3g0107501 32.667 450 287 7 38 473 27 474 2.27e-74 242
Msa0107880 MtrunA17_Chr8g0372411 31.136 440 290 7 45 474 40 476 2.51e-74 241
Msa0107880 MtrunA17_Chr2g0293411 30.498 482 306 10 20 478 14 489 6.30e-74 241
Msa0107880 MtrunA17_Chr7g0226771 31.799 478 298 12 20 477 7 476 1.16e-73 240
Msa0107880 MtrunA17_Chr3g0141801 30.867 473 300 9 21 473 16 481 1.50e-73 240
Msa0107880 MtrunA17_Chr5g0403931 32.143 448 280 9 44 473 36 477 3.45e-73 239
Msa0107880 MtrunA17_Chr8g0341951 31.655 417 266 7 44 448 37 446 7.43e-73 238
Msa0107880 MtrunA17_Chr8g0388921 31.343 469 304 9 20 473 9 474 1.76e-71 234
Msa0107880 MtrunA17_Chr8g0381571 33.333 441 257 11 34 447 30 460 3.14e-71 233
Msa0107880 MtrunA17_Chr8g0381541 32.960 446 262 11 34 452 30 465 3.56e-71 234
Msa0107880 MtrunA17_Chr5g0443401 30.913 482 300 13 19 476 5 477 1.35e-69 229
Msa0107880 MtrunA17_Chr3g0089361 30.357 448 283 12 44 474 40 475 8.41e-66 219
Msa0107880 MtrunA17_Chr5g0397971 29.590 463 311 9 26 476 11 470 3.19e-65 218
Msa0107880 MtrunA17_Chr8g0372711 29.087 471 315 7 19 476 19 483 9.21e-65 217
Msa0107880 MtrunA17_Chr6g0478161 29.498 478 309 10 16 474 20 488 2.16e-64 216
Msa0107880 MtrunA17_Chr5g0443731 29.933 451 298 9 41 477 26 472 4.26e-63 212
Msa0107880 MtrunA17_Chr8g0380471 29.955 444 293 10 44 473 34 473 1.63e-61 208
Msa0107880 MtrunA17_Chr8g0339861 30.063 479 302 14 18 474 17 484 4.94e-60 204
Msa0107880 MtrunA17_Chr8g0373441 31.250 416 250 11 10 407 7 404 3.38e-56 192
Msa0107880 MtrunA17_Chr8g0380931 27.027 444 311 10 42 473 60 502 1.88e-54 190
Msa0107880 MtrunA17_Chr3g0089351 27.792 403 274 7 79 474 1 393 3.20e-54 186
Msa0107880 MtrunA17_Chr5g0404861 43.151 146 78 2 331 473 13 156 1.00e-34 127
Msa0107880 MtrunA17_Chr6g0463551 34.066 182 109 4 199 372 11 189 2.36e-30 117
Msa0107880 MtrunA17_Chr8g0381551 28.852 305 181 10 34 312 30 324 1.48e-29 118
Msa0107880 MtrunA17_Chr8g0381561 45.455 110 59 1 339 447 2 111 1.18e-27 107
Msa0107880 MtrunA17_Chr1g0174481 25.519 482 304 17 14 454 7 474 4.82e-27 114
Msa0107880 MtrunA17_Chr4g0000151 39.062 128 76 2 339 465 5 131 2.98e-26 103
Msa0107880 MtrunA17_Chr8g0382901 23.982 442 297 14 33 450 17 443 5.72e-26 112
Msa0107880 MtrunA17_Chr8g0382901 21.786 459 317 12 24 450 474 922 4.28e-20 94.0
Msa0107880 MtrunA17_Chr5g0404881 27.064 218 147 3 27 232 12 229 8.07e-26 105
Msa0107880 MtrunA17_Chr6g0458561 25.510 490 298 20 14 450 22 497 9.47e-26 110
Msa0107880 MtrunA17_Chr1g0161671 26.298 289 197 7 38 312 23 309 1.10e-25 107
Msa0107880 MtrunA17_Chr5g0436981 32.927 164 103 4 37 195 22 183 2.47e-25 102
Msa0107880 MtrunA17_Chr7g0235261 25.310 403 266 12 73 447 85 480 3.12e-25 108
Msa0107880 MtrunA17_Chr3g0116741 25.052 483 313 15 13 458 21 491 3.25e-25 108
Msa0107880 MtrunA17_Chr4g0000161 28.070 285 184 9 38 307 37 315 9.68e-25 104
Msa0107880 MtrunA17_Chr1g0174441 24.194 496 318 16 5 454 18 501 1.27e-24 107
Msa0107880 MtrunA17_Chr4g0000171 27.018 285 187 10 38 307 37 315 1.78e-24 103
Msa0107880 MtrunA17_Chr1g0160851 25.330 454 274 15 44 452 34 467 1.92e-24 106
Msa0107880 MtrunA17_Chr1g0200961 25.424 472 299 16 20 450 6 465 1.94e-24 106
Msa0107880 MtrunA17_Chr5g0405001 23.142 471 319 9 17 450 17 481 3.80e-24 105
Msa0107880 MtrunA17_Chr8g0362731 25.654 382 234 14 104 450 15 381 5.47e-24 103
Msa0107880 MtrunA17_Chr1g0174451 24.896 482 312 13 14 454 8 480 5.89e-24 104
Msa0107880 MtrunA17_Chr6g0463541 42.453 106 61 0 368 473 2 107 6.20e-24 96.3
Msa0107880 MtrunA17_Chr2g0310381 23.747 459 308 16 18 440 3 455 6.77e-24 104
Msa0107880 MtrunA17_Chr5g0403321 23.956 455 290 14 41 450 31 474 7.73e-24 104
Msa0107880 MtrunA17_Chr4g0035921 23.841 453 289 14 45 450 38 481 8.83e-24 104
Msa0107880 MtrunA17_Chr8g0339331 24.401 459 280 15 45 450 40 484 8.88e-24 104
Msa0107880 MtrunA17_Chr5g0437001 43.519 108 57 1 340 443 1 108 1.38e-23 97.1
Msa0107880 MtrunA17_Chr3g0101671 24.008 479 313 15 12 450 6 473 1.40e-23 103
Msa0107880 MtrunA17_Chr8g0361471 25.949 474 298 16 21 450 5 469 2.13e-23 103
Msa0107880 MtrunA17_Chr3g0101611 25.112 446 290 17 44 453 38 475 5.56e-23 101
Msa0107880 MtrunA17_Chr3g0084921 25.403 496 309 16 12 457 2 486 6.91e-23 101
Msa0107880 MtrunA17_Chr2g0310391 23.060 451 299 16 18 431 3 442 7.90e-23 101
Msa0107880 MtrunA17_Chr1g0162811 23.663 486 306 16 12 450 1 468 1.36e-22 100
Msa0107880 MtrunA17_Chr1g0162801 25.000 484 292 20 18 450 8 471 1.41e-22 100
Msa0107880 MtrunA17_Chr8g0334891 23.556 450 292 13 42 463 36 461 2.30e-22 99.8
Msa0107880 MtrunA17_Chr4g0004601 23.709 426 265 17 90 474 123 529 2.71e-22 99.8
Msa0107880 MtrunA17_Chr4g0058231 24.330 485 302 17 18 452 2 471 2.80e-22 99.8
Msa0107880 MtrunA17_Chr7g0258221 24.638 483 312 18 16 457 9 480 3.99e-22 99.4
Msa0107880 MtrunA17_Chr3g0116681 24.681 470 307 15 17 450 13 471 4.38e-22 99.0
Msa0107880 MtrunA17_Chr5g0403351 23.554 484 312 18 12 450 1 471 4.75e-22 99.0
Msa0107880 MtrunA17_Chr6g0465511 25.316 474 301 17 21 450 5 469 6.36e-22 98.6
Msa0107880 MtrunA17_Chr4g0013471 25.574 305 198 10 38 323 37 331 9.71e-22 97.1
Msa0107880 MtrunA17_Chr6g0466331 24.842 475 302 18 21 450 5 469 1.00e-21 97.8
Msa0107880 MtrunA17_Chr4g0074581 23.587 513 310 17 3 453 24 516 1.41e-21 97.8
Msa0107880 MtrunA17_Chr1g0174471 23.026 456 292 12 46 454 52 495 2.44e-21 97.1
Msa0107880 MtrunA17_Chr7g0218601 23.928 443 292 13 44 450 34 467 2.86e-21 96.7
Msa0107880 MtrunA17_Chr8g0346261 23.947 451 292 15 46 458 86 523 3.31e-21 96.7
Msa0107880 MtrunA17_Chr7g0218611 24.499 449 294 13 38 449 27 467 3.54e-21 96.3
Msa0107880 MtrunA17_Chr4g0058201 23.799 458 309 15 34 458 18 468 4.32e-21 95.9
Msa0107880 MtrunA17_Chr5g0431511 24.153 472 310 17 44 478 33 493 4.46e-21 95.9
Msa0107880 MtrunA17_Chr4g0011961 24.681 470 311 16 16 450 2 463 5.40e-21 95.9
Msa0107880 MtrunA17_Chr4g0076161 23.077 481 318 15 12 450 1 471 6.28e-21 95.5
Msa0107880 MtrunA17_Chr7g0235551 25.275 455 288 15 44 454 33 479 7.41e-21 95.5
Msa0107880 MtrunA17_Chr3g0128461 23.704 405 266 12 68 439 92 486 7.50e-21 95.5
Msa0107880 MtrunA17_Chr6g0463801 25.057 439 283 14 44 448 37 463 9.04e-21 95.1
Msa0107880 MtrunA17_Chr5g0431501 23.991 446 292 13 44 450 33 470 1.47e-20 94.4
Msa0107880 MtrunA17_Chr5g0431461 23.991 446 292 13 44 450 33 470 1.47e-20 94.4
Msa0107880 MtrunA17_Chr8g0357421 22.547 479 321 13 12 450 1 469 2.99e-20 93.6
Msa0107880 MtrunA17_Chr1g0160861 33.333 177 106 4 283 452 137 308 3.45e-20 91.7
Msa0107880 MtrunA17_Chr1g0213671 27.679 448 273 19 44 448 34 473 3.91e-20 93.2
Msa0107880 MtrunA17_Chr3g0094231 24.459 462 279 16 38 450 30 470 4.78e-20 92.8
Msa0107880 MtrunA17_Chr1g0203141 23.937 447 279 17 68 473 86 512 4.79e-20 92.8
Msa0107880 MtrunA17_Chr1g0193811 23.202 431 289 12 76 473 92 513 5.73e-20 92.8
Msa0107880 MtrunA17_Chr8g0356001 23.629 474 317 13 15 450 8 474 5.74e-20 92.8
Msa0107880 MtrunA17_Chr4g0057001 22.921 445 295 13 44 450 50 484 1.01e-19 92.0
Msa0107880 MtrunA17_Chr8g0372251 23.697 422 276 13 45 427 36 450 1.15e-19 91.7
Msa0107880 MtrunA17_Chr1g0205371 25.159 473 306 17 18 453 8 469 1.20e-19 91.7
Msa0107880 MtrunA17_Chr6g0466901 23.941 472 302 18 12 431 1 467 1.98e-19 90.9
Msa0107880 MtrunA17_Chr4g0011901 23.529 442 295 13 45 450 30 464 2.03e-19 90.9
Msa0107880 MtrunA17_Chr1g0154731 23.333 420 289 13 76 471 88 498 2.30e-19 90.9
Msa0107880 MtrunA17_Chr0c19g0493771 30.303 198 122 5 261 451 433 621 2.49e-19 91.3
Msa0107880 MtrunA17_Chr3g0101661 22.661 481 325 15 12 452 1 474 2.59e-19 90.5
Msa0107880 MtrunA17_Chr6g0457421 26.139 417 248 16 103 476 106 505 2.79e-19 90.5
Msa0107880 MtrunA17_Chr5g0401681 23.207 474 306 14 19 452 8 463 2.97e-19 90.5
Msa0107880 MtrunA17_Chr4g0063221 23.218 491 305 17 14 444 12 490 3.08e-19 90.5
Msa0107880 MtrunA17_Chr1g0174461 21.488 484 318 10 19 454 10 479 3.09e-19 90.5
Msa0107880 MtrunA17_Chr3g0101701 22.075 453 294 17 44 452 38 475 3.26e-19 90.5
Msa0107880 MtrunA17_Chr3g0101721 22.345 452 293 15 44 452 37 473 3.53e-19 90.1
Msa0107880 MtrunA17_Chr4g0046331 23.529 425 268 15 74 452 65 478 3.61e-19 90.1
Msa0107880 MtrunA17_Chr4g0058191 22.746 488 307 16 18 458 2 466 4.54e-19 89.7
Msa0107880 MtrunA17_Chr4g0046321 23.934 422 268 16 74 452 65 476 4.59e-19 90.1
Msa0107880 MtrunA17_Chr4g0046351 22.864 433 279 15 74 462 65 486 4.71e-19 89.7
Msa0107880 MtrunA17_Chr5g0446151 23.371 445 299 15 38 450 35 469 5.52e-19 89.7
Msa0107880 MtrunA17_Chr8g0362701 24.256 437 282 13 60 454 50 479 5.60e-19 89.7
Msa0107880 MtrunA17_Chr5g0445451 23.391 466 315 16 16 450 14 468 5.65e-19 89.7
Msa0107880 MtrunA17_Chr3g0101731 21.962 469 324 12 18 450 7 469 5.86e-19 89.7
Msa0107880 MtrunA17_Chr4g0058281 22.887 485 324 16 14 458 15 489 6.27e-19 89.4
Msa0107880 MtrunA17_Chr4g0047641 23.629 474 311 16 22 450 17 484 6.53e-19 89.4
Msa0107880 MtrunA17_Chr7g0215181 25.600 375 229 15 133 476 152 507 7.06e-19 89.4
Msa0107880 MtrunA17_Chr1g0205361 24.779 452 279 15 44 452 34 467 7.53e-19 89.4
Msa0107880 MtrunA17_Chr4g0047661 23.333 480 321 15 16 456 20 491 7.64e-19 89.4
Msa0107880 MtrunA17_Chr4g0011981 24.565 460 291 17 33 450 19 464 9.62e-19 89.0
Msa0107880 MtrunA17_Chr5g0445461 23.555 467 313 18 16 450 14 468 1.46e-18 88.2
Msa0107880 MtrunA17_Chr5g0395321 22.174 460 321 12 16 450 18 465 2.11e-18 87.8
Msa0107880 MtrunA17_Chr8g0362481 27.854 219 145 4 245 454 196 410 2.16e-18 87.4
Msa0107880 MtrunA17_Chr3g0101821 20.711 478 332 11 10 450 2 469 2.35e-18 87.8
Msa0107880 MtrunA17_Chr1g0161641 47.368 76 39 1 373 447 13 88 3.20e-18 79.3
Msa0107880 MtrunA17_Chr7g0246221 22.101 457 300 16 44 458 34 476 5.51e-18 86.7
Msa0107880 MtrunA17_Chr5g0406651 21.834 458 320 12 27 450 12 465 6.75e-18 86.3
Msa0107880 MtrunA17_Chr5g0446161 23.690 439 292 16 44 450 41 468 6.78e-18 86.3
Msa0107880 MtrunA17_Chr8g0334941 25.694 288 180 7 194 463 35 306 8.88e-18 84.3
Msa0107880 MtrunA17_Chr4g0011921 25.210 476 304 16 14 450 2 464 1.14e-17 85.5
Msa0107880 MtrunA17_Chr8g0344191 23.729 472 306 19 18 450 50 506 1.52e-17 85.5
Msa0107880 MtrunA17_Chr3g0101571 22.096 439 303 15 44 450 36 467 1.54e-17 85.1
Msa0107880 MtrunA17_Chr3g0101691 21.778 450 305 15 39 450 33 473 2.13e-17 84.7
Msa0107880 MtrunA17_Chr5g0395381 22.489 458 297 14 16 450 18 440 2.45e-17 84.3
Msa0107880 MtrunA17_Chr5g0413911 24.301 465 297 17 44 455 42 504 2.51e-17 84.7
Msa0107880 MtrunA17_Chr1g0164211 23.391 466 268 14 44 452 31 464 3.72e-17 84.0
Msa0107880 MtrunA17_Chr8g0377341 23.029 482 313 19 7 448 32 495 3.80e-17 84.0
Msa0107880 MtrunA17_Chr5g0445441 23.226 465 317 17 16 450 55 509 3.86e-17 84.0
Msa0107880 MtrunA17_Chr6g0451681 23.297 455 274 18 14 446 37 438 4.31e-17 83.6
Msa0107880 MtrunA17_Chr1g0179811 23.874 444 279 14 76 474 108 537 5.15e-17 83.6
Msa0107880 MtrunA17_Chr3g0101651 20.632 475 326 15 18 452 12 475 6.18e-17 83.2
Msa0107880 MtrunA17_Chr6g0463561 28.324 173 115 4 11 178 9 177 9.42e-17 78.6
Msa0107880 MtrunA17_Chr3g0101581 22.410 473 311 17 19 450 13 470 9.84e-17 82.8
Msa0107880 MtrunA17_Chr3g0101801 22.567 483 327 16 5 450 4 476 9.95e-17 82.8
Msa0107880 MtrunA17_Chr1g0200951 22.912 467 289 18 34 448 50 497 1.02e-16 82.8
Msa0107880 MtrunA17_Chr4g0024771 21.616 458 326 15 21 450 16 468 1.32e-16 82.4
Msa0107880 MtrunA17_Chr5g0395331 22.222 450 293 11 44 450 37 472 2.21e-16 81.6
Msa0107880 MtrunA17_Chr8g0351801 22.785 316 185 9 174 456 203 492 2.50e-16 81.6
Msa0107880 MtrunA17_Chr2g0296661 22.912 419 276 12 69 449 56 465 2.90e-16 81.3
Msa0107880 MtrunA17_Chr5g0403331 22.904 489 310 19 12 450 1 472 3.44e-16 80.9
Msa0107880 MtrunA17_Chr5g0396521 26.296 270 149 9 234 458 286 550 3.49e-16 81.3
Msa0107880 MtrunA17_Chr8g0364651 23.173 479 304 15 18 449 6 467 3.85e-16 80.9
Msa0107880 MtrunA17_Chr4g0058211 28.804 184 121 4 281 458 15 194 4.91e-16 77.0
Msa0107880 MtrunA17_Chr7g0258211 20.323 433 294 11 69 458 63 487 5.67e-16 80.5
Msa0107880 MtrunA17_Chr4g0011881 23.542 463 308 16 21 450 15 464 8.62e-16 79.7
Msa0107880 MtrunA17_Chr4g0030701 22.222 459 296 14 45 453 36 483 1.71e-15 79.0
Msa0107880 MtrunA17_Chr7g0246181 22.676 441 292 13 55 457 45 474 1.87e-15 78.6
Msa0107880 MtrunA17_Chr6g0451741 24.319 477 274 18 20 427 34 492 2.20e-15 78.6
Msa0107880 MtrunA17_Chr4g0056951 23.040 421 280 15 67 450 66 479 2.84e-15 78.2
Msa0107880 MtrunA17_Chr2g0280261 23.476 443 302 14 44 460 34 465 3.62e-15 77.8
Msa0107880 MtrunA17_Chr4g0030711 22.611 429 281 13 69 451 61 484 5.04e-15 77.4
Msa0107880 MtrunA17_Chr5g0400391 43.373 83 46 1 391 472 2 84 5.48e-15 70.9
Msa0107880 MtrunA17_Chr5g0401691 21.967 478 324 14 10 452 17 480 6.08e-15 77.0
Msa0107880 MtrunA17_Chr1g0174431 28.333 180 113 3 288 455 4 179 8.62e-15 73.2
Msa0107880 MtrunA17_Chr3g0101831 21.542 441 305 16 44 450 37 470 9.74e-15 76.6
Msa0107880 MtrunA17_Chr1g0176831 22.561 492 332 16 18 474 37 514 1.08e-14 76.3
Msa0107880 MtrunA17_Chr3g0089381 25.654 191 125 5 200 382 21 202 1.26e-14 73.2
Msa0107880 MtrunA17_Chr5g0419691 23.620 453 301 17 35 450 20 464 2.70e-14 75.1
Msa0107880 MtrunA17_Chr7g0246151 22.494 449 285 15 55 458 45 475 2.89e-14 75.1
Msa0107880 MtrunA17_Chr7g0262111 23.472 409 275 13 68 450 82 478 3.71e-14 74.7
Msa0107880 MtrunA17_Chr2g0296651 22.661 481 300 17 22 454 9 465 6.91e-14 73.9
Msa0107880 MtrunA17_Chr5g0446101 26.027 219 149 5 240 450 68 281 7.08e-14 72.4
Msa0107880 MtrunA17_Chr4g0052851 23.214 448 287 15 37 449 26 451 7.44e-14 73.6
Msa0107880 MtrunA17_Chr3g0135841 24.164 269 183 7 220 473 271 533 8.93e-14 73.6
Msa0107880 MtrunA17_Chr6g0463791 21.674 466 321 14 18 450 13 467 9.34e-14 73.6
Msa0107880 MtrunA17_Chr5g0445531 22.299 435 305 15 44 450 38 467 9.79e-14 73.2
Msa0107880 MtrunA17_Chr2g0314731 21.616 495 339 15 15 474 4 484 1.15e-13 73.2
Msa0107880 MtrunA17_Chr1g0161651 24.595 309 172 9 19 268 12 318 1.64e-13 71.6
Msa0107880 MtrunA17_Chr4g0046681 27.647 170 105 6 284 440 30 194 2.00e-13 70.1
Msa0107880 MtrunA17_Chr3g0089291 24.464 233 161 6 79 304 1 225 2.18e-13 69.7
Msa0107880 MtrunA17_Chr4g0011851 27.895 190 121 5 270 450 1 183 2.28e-13 69.3
Msa0107880 MtrunA17_Chr1g0207841 27.128 188 127 4 272 453 302 485 2.38e-13 72.0
Msa0107880 MtrunA17_Chr2g0313771 21.792 413 278 11 90 468 114 515 2.58e-13 72.0
Msa0107880 MtrunA17_Chr4g0017411 23.362 458 305 16 23 453 14 452 2.79e-13 72.0
Msa0107880 MtrunA17_Chr3g0101741 22.444 401 264 13 90 458 11 396 2.99e-13 71.6
Msa0107880 MtrunA17_Chr5g0430081 22.567 483 320 19 14 453 2 473 3.00e-13 72.0
Msa0107880 MtrunA17_Chr4g0053621 22.222 450 302 17 40 451 27 466 3.15e-13 71.6
Msa0107880 MtrunA17_Chr8g0370641 26.033 242 161 4 231 458 260 497 4.46e-13 71.2
Msa0107880 MtrunA17_Chr7g0248991 29.870 154 98 4 261 413 215 359 7.86e-13 69.7
Msa0107880 MtrunA17_Chr8g0387101 22.951 427 286 11 68 454 58 481 1.05e-12 70.1
Msa0107880 MtrunA17_Chr8g0364631 21.875 480 323 17 44 476 32 506 1.24e-12 69.7
Msa0107880 MtrunA17_Chr4g0039391 26.486 185 127 4 274 453 293 473 1.49e-12 69.7
Msa0107880 MtrunA17_Chr4g0052881 23.963 217 159 4 240 455 256 467 1.65e-12 69.3
Msa0107880 MtrunA17_Chr4g0046631 21.267 442 297 14 45 440 46 482 1.75e-12 69.3
Msa0107880 MtrunA17_Chr2g0280081 21.362 426 293 11 68 454 557 979 1.82e-12 70.1
Msa0107880 MtrunA17_Chr2g0280121 22.145 429 288 14 68 454 60 484 2.85e-12 68.9
Msa0107880 MtrunA17_Chr8g0370651 25.207 242 163 4 231 458 264 501 3.83e-12 68.6
Msa0107880 MtrunA17_Chr1g0161661 42.623 61 34 1 392 451 15 75 5.03e-12 62.4
Msa0107880 MtrunA17_Chr3g0086661 29.474 190 118 6 272 450 290 474 5.99e-12 67.8
Msa0107880 MtrunA17_Chr3g0086651 28.947 190 119 6 272 450 290 474 1.03e-11 67.0
Msa0107880 MtrunA17_Chr2g0280011 28.492 179 113 4 288 454 11 186 1.14e-11 64.3
Msa0107880 MtrunA17_Chr2g0313791 22.164 379 254 10 87 435 102 469 1.32e-11 66.6
Msa0107880 MtrunA17_Chr4g0026941 27.413 259 166 7 228 473 287 536 2.10e-11 66.2
Msa0107880 MtrunA17_Chr8g0354571 22.333 403 264 15 87 453 111 500 2.26e-11 65.9
Msa0107880 MtrunA17_Chr8g0354531 23.210 405 255 13 88 453 234 621 3.11e-11 65.9
Msa0107880 MtrunA17_Chr5g0430131 21.639 476 317 18 21 453 12 474 3.64e-11 65.5
Msa0107880 MtrunA17_Chr4g0011941 28.736 174 110 5 285 450 1 168 5.48e-11 62.0
Msa0107880 MtrunA17_Chr8g0373431 45.902 61 32 1 413 473 4 63 5.57e-11 58.2
Msa0107880 MtrunA17_Chr2g0313831 21.429 392 266 9 88 444 103 487 6.19e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0107880 AT2G29090.2 67.265 446 143 3 31 474 36 480 0.0 614
Msa0107880 AT2G29090.1 67.265 446 143 3 31 474 36 480 0.0 614
Msa0107880 AT4G19230.1 56.410 468 195 4 12 476 1 462 0.0 549
Msa0107880 AT5G45340.1 55.983 468 197 3 12 476 1 462 0.0 548
Msa0107880 AT3G19270.2 57.298 459 191 3 14 471 7 461 0.0 537
Msa0107880 AT4G19230.2 54.957 464 199 5 12 471 1 458 0.0 516
Msa0107880 AT2G29090.3 66.580 386 126 3 91 474 1 385 0.0 516
Msa0107880 AT5G45340.2 55.257 447 191 3 12 455 1 441 3.62e-179 509
Msa0107880 AT3G19270.1 57.110 436 182 3 14 448 7 438 5.76e-177 504
Msa0107880 AT2G29090.4 63.415 287 102 3 31 315 36 321 5.49e-120 355
Msa0107880 AT1G19630.1 32.773 476 299 9 11 474 7 473 1.22e-76 248
Msa0107880 AT2G32440.2 33.197 488 303 12 7 474 1 485 1.88e-76 248
Msa0107880 AT2G32440.1 33.197 488 303 12 7 474 1 485 1.88e-76 248
Msa0107880 AT5G38970.1 29.847 459 313 7 20 474 10 463 2.59e-76 247
Msa0107880 AT1G05160.2 32.511 446 284 8 44 474 45 488 6.34e-76 246
Msa0107880 AT1G05160.1 32.511 446 284 8 44 474 45 488 6.34e-76 246
Msa0107880 AT5G05690.1 32.715 431 269 8 44 461 31 453 9.62e-76 245
Msa0107880 AT3G30180.1 30.377 451 306 6 20 466 10 456 4.69e-73 238
Msa0107880 AT3G13730.1 31.081 444 286 7 44 473 51 488 6.93e-72 236
Msa0107880 AT1G19630.3 32.962 449 281 8 11 448 7 446 9.04e-72 234
Msa0107880 AT5G36110.1 31.544 447 282 10 44 473 34 473 1.06e-70 233
Msa0107880 AT4G36380.1 31.011 445 290 8 44 474 69 510 1.44e-70 233
Msa0107880 AT3G13730.2 31.100 418 270 6 44 447 51 464 1.28e-69 229
Msa0107880 AT2G42850.1 30.992 484 312 11 13 478 6 485 4.26e-67 223
Msa0107880 AT5G05690.2 32.620 374 236 6 44 408 31 397 2.12e-65 216
Msa0107880 AT3G50660.1 29.854 479 281 10 44 474 39 510 7.82e-65 218
Msa0107880 AT1G12740.1 28.634 454 308 7 20 459 8 459 1.90e-64 216
Msa0107880 AT5G38970.3 29.771 393 270 5 20 410 10 398 2.80e-64 214
Msa0107880 AT1G12740.2 28.478 460 307 8 20 459 8 465 1.90e-62 211
Msa0107880 AT1G12740.4 28.261 460 308 8 20 459 8 465 7.06e-62 209
Msa0107880 AT1G73340.1 28.274 481 308 9 16 478 21 482 1.59e-61 209
Msa0107880 AT1G19630.2 32.688 413 257 9 11 411 7 410 4.51e-60 203
Msa0107880 AT5G48000.2 28.884 457 305 10 34 474 22 474 2.18e-58 200
Msa0107880 AT5G48000.4 28.884 457 305 10 34 474 22 474 2.18e-58 200
Msa0107880 AT5G48000.7 28.884 457 305 10 34 474 22 474 2.18e-58 200
Msa0107880 AT5G48000.6 28.884 457 305 10 34 474 22 474 2.18e-58 200
Msa0107880 AT5G48000.5 28.884 457 305 10 34 474 22 474 2.18e-58 200
Msa0107880 AT5G48000.3 28.884 457 305 10 34 474 22 474 2.18e-58 200
Msa0107880 AT5G48000.1 28.884 457 305 10 34 474 63 515 5.44e-58 200
Msa0107880 AT5G14400.2 30.594 438 266 12 49 473 1 413 4.13e-55 190
Msa0107880 AT5G14400.3 30.993 413 248 11 49 448 1 389 2.54e-53 184
Msa0107880 AT1G55940.2 27.400 500 305 17 14 478 16 492 7.32e-53 186
Msa0107880 AT5G38970.2 27.676 383 269 6 96 474 4 382 3.19e-52 181
Msa0107880 AT5G38970.4 27.676 383 269 6 96 474 4 382 3.19e-52 181
Msa0107880 AT1G78490.1 27.489 462 311 11 19 462 7 462 6.65e-51 180
Msa0107880 AT1G55940.1 27.991 468 282 16 14 446 16 463 9.70e-51 179
Msa0107880 AT5G05690.3 30.792 341 219 7 130 461 2 334 1.57e-50 176
Msa0107880 AT3G50660.2 29.073 399 242 8 44 407 39 431 4.36e-48 172
Msa0107880 AT3G44970.1 27.039 466 309 12 32 478 21 474 1.49e-47 171
Msa0107880 AT4G15300.2 28.097 452 294 12 16 450 8 445 3.01e-47 170
Msa0107880 AT1G65670.1 27.494 451 293 13 18 450 7 441 3.07e-47 170
Msa0107880 AT4G15300.3 28.062 449 292 12 19 450 1 435 5.60e-47 169
Msa0107880 AT4G36380.2 28.909 339 230 6 44 372 69 406 9.33e-45 162
Msa0107880 AT5G14400.1 30.366 382 232 11 101 473 3 359 9.43e-43 155
Msa0107880 AT4G15393.2 26.549 452 299 18 18 450 7 444 2.24e-42 157
Msa0107880 AT1G12740.3 27.577 359 252 5 20 372 8 364 4.35e-42 154
Msa0107880 AT5G36110.2 29.178 353 228 8 44 381 34 379 1.77e-40 150
Msa0107880 AT4G15310.1 27.640 445 299 11 22 450 11 448 2.93e-40 151
Msa0107880 AT1G78490.2 26.733 404 276 9 19 407 7 405 1.21e-39 148
Msa0107880 AT4G15300.1 26.539 471 293 14 19 450 1 457 1.26e-39 149
Msa0107880 AT2G42850.2 29.457 387 251 11 13 381 6 388 3.18e-38 144
Msa0107880 AT4G15396.1 25.000 448 308 16 19 450 11 446 1.03e-37 144
Msa0107880 AT4G15396.3 24.153 443 314 14 19 448 11 444 2.28e-36 140
Msa0107880 AT5G14400.4 28.869 336 221 9 49 372 1 330 7.75e-33 127
Msa0107880 AT4G15396.2 25.176 425 266 17 44 450 35 425 2.43e-31 125
Msa0107880 AT4G15393.1 25.369 406 275 16 18 408 7 399 3.82e-31 124
Msa0107880 AT5G36130.1 41.176 136 78 2 340 473 1 136 9.53e-31 116
Msa0107880 AT3G30290.1 24.934 381 266 11 80 450 5 375 7.65e-30 120
Msa0107880 AT5G36140.1 28.814 295 184 11 29 306 16 301 4.11e-27 111
Msa0107880 AT4G15396.4 24.468 376 262 13 44 407 35 400 5.83e-27 112
Msa0107880 AT2G46960.2 25.926 432 275 13 75 471 91 512 1.22e-26 113
Msa0107880 AT5G04330.1 24.733 469 304 15 42 466 30 493 2.31e-26 112
Msa0107880 AT5G57220.1 25.330 454 288 13 44 463 30 466 2.03e-25 109
Msa0107880 AT4G37400.1 27.707 314 205 10 163 463 168 472 3.50e-25 108
Msa0107880 AT4G37430.1 23.480 477 305 15 22 451 1 464 4.91e-25 108
Msa0107880 AT3G20950.1 23.045 486 322 19 12 452 7 485 3.90e-24 105
Msa0107880 AT4G15393.3 24.010 404 250 15 18 408 7 366 3.92e-24 103
Msa0107880 AT5G25120.1 23.789 475 310 15 14 450 1 461 4.99e-24 105
Msa0107880 AT3G20940.1 21.798 445 308 12 44 452 42 482 5.71e-24 105
Msa0107880 AT3G10560.1 24.435 487 317 18 4 448 3 480 1.28e-23 104
Msa0107880 AT1G74110.1 24.603 504 308 20 11 455 24 514 1.51e-23 103
Msa0107880 AT4G13770.1 25.478 471 293 16 21 450 14 467 2.97e-23 102
Msa0107880 AT2G46960.1 25.575 391 247 12 115 471 16 396 5.94e-23 101
Msa0107880 AT5G25180.1 23.667 469 310 15 18 450 5 461 5.95e-23 102
Msa0107880 AT3G20110.1 23.241 469 316 15 20 453 13 472 2.00e-22 100
Msa0107880 AT1G11680.1 21.730 474 318 12 19 463 14 463 4.23e-22 99.4
Msa0107880 AT4G37370.1 27.982 218 151 4 236 452 248 460 4.48e-22 99.4
Msa0107880 AT3G32047.1 22.669 472 326 13 16 453 13 479 8.89e-22 98.6
Msa0107880 AT2G45560.1 25.625 480 295 18 20 450 9 475 1.05e-21 98.2
Msa0107880 AT3G26150.1 24.291 494 318 16 19 469 5 485 1.78e-21 97.8
Msa0107880 AT2G45550.1 25.828 453 275 18 44 450 38 475 3.07e-21 97.1
Msa0107880 AT3G28740.1 27.000 300 196 9 163 451 181 468 4.26e-21 96.7
Msa0107880 AT2G25160.1 23.395 483 314 18 12 446 1 475 5.91e-21 96.3
Msa0107880 AT4G37410.1 26.217 267 180 8 219 476 229 487 1.08e-20 95.1
Msa0107880 AT4G31500.1 23.297 455 284 13 44 450 29 466 1.19e-20 95.1
Msa0107880 AT2G27010.1 21.569 408 292 8 75 461 66 466 1.22e-20 95.1
Msa0107880 AT3G26170.1 22.917 480 316 15 14 450 1 469 1.56e-20 94.7
Msa0107880 AT2G14100.1 23.185 427 289 13 65 458 64 484 1.73e-20 94.7
Msa0107880 AT5G25140.1 22.833 473 317 12 14 450 1 461 2.60e-20 94.0
Msa0107880 AT2G45570.1 24.468 470 289 15 57 472 50 507 3.07e-20 94.0
Msa0107880 AT4G36220.1 23.251 443 291 13 51 450 47 483 6.36e-20 92.8
Msa0107880 AT2G26170.1 22.272 449 300 11 43 446 44 488 8.63e-20 92.4
Msa0107880 AT2G46660.1 22.444 450 297 15 46 458 72 506 9.79e-20 92.4
Msa0107880 AT3G26180.1 23.556 450 291 14 44 450 30 469 1.01e-19 92.4
Msa0107880 AT3G26160.1 23.944 426 281 14 44 431 30 450 1.21e-19 92.0
Msa0107880 AT4G15360.1 22.034 472 320 12 18 450 14 476 1.23e-19 92.0
Msa0107880 AT1G11600.1 22.245 481 314 14 20 448 6 478 1.64e-19 91.7
Msa0107880 AT2G26710.1 24.215 446 276 16 67 471 86 510 1.80e-19 91.7
Msa0107880 AT5G06905.1 22.840 486 318 14 23 458 9 487 1.99e-19 91.7
Msa0107880 AT1G64930.1 22.826 460 292 15 44 451 32 480 2.06e-19 91.3
Msa0107880 AT3G61880.1 24.295 461 288 17 33 448 53 497 2.15e-19 91.3
Msa0107880 AT3G61880.2 24.295 461 288 17 33 448 53 497 3.25e-19 90.9
Msa0107880 AT4G27710.1 24.885 434 275 14 75 471 93 512 4.24e-19 90.5
Msa0107880 AT4G37320.1 26.957 230 155 5 236 457 249 473 4.62e-19 90.1
Msa0107880 AT4G37360.1 30.726 179 119 3 275 452 287 461 7.65e-19 89.7
Msa0107880 AT4G12330.1 23.776 429 282 17 67 458 68 488 8.33e-19 89.7
Msa0107880 AT2G46950.1 24.598 435 277 15 73 471 146 565 9.42e-19 89.7
Msa0107880 AT1G64940.1 22.271 458 296 13 44 451 33 480 2.13e-18 88.2
Msa0107880 AT5G25130.1 24.160 476 307 17 14 450 1 461 2.90e-18 87.8
Msa0107880 AT5G36220.2 24.204 314 209 9 154 453 24 322 2.93e-18 86.7
Msa0107880 AT4G31940.1 29.004 231 131 10 236 445 260 478 3.30e-18 87.8
Msa0107880 AT4G12320.1 23.431 478 305 14 18 450 20 481 3.91e-18 87.4
Msa0107880 AT3G20120.4 21.698 424 281 14 75 458 72 484 4.04e-18 87.4
Msa0107880 AT2G27000.1 22.169 415 281 12 75 452 70 479 5.20e-18 87.0
Msa0107880 AT1G66540.2 28.788 198 130 5 274 466 114 305 5.21e-18 85.5
Msa0107880 AT3G48320.1 22.318 466 321 14 15 450 3 457 6.97e-18 86.7
Msa0107880 AT3G26220.1 23.395 483 318 15 21 458 3 478 7.19e-18 86.7
Msa0107880 AT1G13110.1 22.785 474 318 15 20 450 3 471 7.53e-18 86.7
Msa0107880 AT2G23220.1 24.746 295 196 8 178 452 188 476 8.54e-18 86.3
Msa0107880 AT1G33730.1 26.774 310 195 11 167 455 49 347 9.45e-18 85.1
Msa0107880 AT1G33730.2 26.774 310 195 11 167 455 49 347 9.45e-18 85.1
Msa0107880 AT3G20130.1 21.667 420 276 11 75 452 73 481 1.10e-17 86.3
Msa0107880 AT4G15110.1 24.815 270 153 7 234 458 294 558 1.16e-17 86.3
Msa0107880 AT1G66540.1 28.788 198 130 5 274 466 173 364 1.21e-17 85.1
Msa0107880 AT5G36220.1 24.351 308 206 9 159 453 175 468 1.35e-17 85.9
Msa0107880 AT3G26300.1 23.011 465 319 16 20 450 6 465 1.64e-17 85.5
Msa0107880 AT3G26230.1 22.785 474 313 12 21 450 3 467 2.07e-17 85.1
Msa0107880 AT4G31950.1 27.477 222 133 8 231 431 243 457 2.50e-17 85.1
Msa0107880 AT3G20130.2 25.229 218 148 3 246 452 240 453 2.63e-17 84.7
Msa0107880 AT4G12300.1 22.041 490 314 16 9 450 10 479 2.75e-17 84.7
Msa0107880 AT3G44970.2 23.699 346 241 10 32 361 21 359 3.07e-17 83.6
Msa0107880 AT3G26270.1 22.126 461 305 12 33 450 21 470 3.72e-17 84.3
Msa0107880 AT1G50520.1 21.158 449 301 10 69 474 68 506 4.19e-17 84.3
Msa0107880 AT2G23190.1 26.991 226 157 5 228 452 287 505 7.47e-17 83.6
Msa0107880 AT4G31970.1 28.571 231 132 10 236 445 259 477 1.09e-16 83.2
Msa0107880 AT5G67310.1 29.050 179 118 3 274 449 297 469 2.29e-16 82.0
Msa0107880 AT3G52970.1 24.740 481 303 15 44 478 36 503 2.71e-16 81.6
Msa0107880 AT3G26180.2 27.014 211 144 5 246 450 129 335 2.90e-16 80.9
Msa0107880 AT4G37340.1 29.282 181 121 4 274 452 286 461 2.96e-16 81.6
Msa0107880 AT1G75130.1 24.750 400 264 14 76 450 89 476 3.37e-16 81.3
Msa0107880 AT1G31800.1 27.273 198 128 5 261 451 354 542 3.63e-16 81.6
Msa0107880 AT5G24900.1 22.819 447 293 16 69 474 90 525 3.82e-16 81.3
Msa0107880 AT5G24910.1 21.319 455 305 15 61 473 86 529 5.70e-16 80.9
Msa0107880 AT3G20120.2 22.192 365 235 11 119 458 8 348 6.15e-16 79.7
Msa0107880 AT3G20120.3 22.192 365 235 11 119 458 8 348 6.15e-16 79.7
Msa0107880 AT3G20120.1 22.192 365 235 11 119 458 8 348 6.15e-16 79.7
Msa0107880 AT3G48290.1 23.025 443 306 15 35 450 24 458 6.36e-16 80.5
Msa0107880 AT5G44620.1 22.535 426 277 15 67 450 68 482 6.71e-16 80.5
Msa0107880 AT4G37310.1 22.954 501 332 17 10 470 2 488 7.52e-16 80.5
Msa0107880 AT3G26200.1 23.368 475 297 16 44 466 28 487 7.75e-16 80.5
Msa0107880 AT2G26170.2 25.424 236 164 4 220 446 173 405 9.28e-16 79.7
Msa0107880 AT3G53130.1 28.205 234 136 8 228 439 278 501 1.07e-15 80.1
Msa0107880 AT3G26190.1 22.717 449 295 13 44 450 28 466 1.09e-15 79.7
Msa0107880 AT5G24900.2 23.077 390 249 15 125 474 30 408 2.28e-15 78.2
Msa0107880 AT1G13080.1 25.743 202 141 4 261 456 277 475 2.74e-15 78.6
Msa0107880 AT1G13080.2 26.020 196 136 4 261 450 159 351 3.30e-15 77.8
Msa0107880 AT1G64950.1 21.225 457 302 12 44 451 32 479 3.72e-15 78.2
Msa0107880 AT2G12190.1 22.041 490 317 14 44 478 32 511 4.51e-15 77.8
Msa0107880 AT1G13100.1 24.444 225 153 4 257 467 269 490 5.36e-15 77.8
Msa0107880 AT3G26280.1 22.845 464 311 14 27 450 15 471 5.37e-15 77.8
Msa0107880 AT4G15380.1 21.739 414 273 11 75 449 73 474 6.81e-15 77.4
Msa0107880 AT3G26280.2 22.845 464 311 14 27 450 32 488 7.72e-15 77.4
Msa0107880 AT3G10570.1 21.446 415 279 12 73 448 74 480 9.63e-15 77.0
Msa0107880 AT3G52970.2 24.444 495 301 17 44 478 36 517 9.75e-15 77.0
Msa0107880 AT4G37330.1 25.701 214 153 4 240 452 250 458 1.29e-14 76.6
Msa0107880 AT3G48300.1 22.197 446 313 18 35 453 19 457 1.50e-14 76.3
Msa0107880 AT3G48300.2 22.197 446 313 18 35 453 21 459 1.51e-14 76.3
Msa0107880 AT3G26210.1 25.510 196 133 5 261 448 276 466 1.97e-14 75.9
Msa0107880 AT1G50560.1 22.441 254 176 6 220 458 242 489 2.33e-14 75.9
Msa0107880 AT3G20935.1 25.843 178 118 2 285 452 134 307 2.77e-14 74.3
Msa0107880 AT4G15350.1 21.729 428 283 13 69 454 60 477 2.84e-14 75.5
Msa0107880 AT2G30750.1 21.973 446 311 13 44 458 33 472 3.35e-14 75.1
Msa0107880 AT3G20090.2 21.277 423 276 16 75 453 74 483 3.45e-14 75.1
Msa0107880 AT3G26320.1 21.538 455 301 15 38 450 25 465 4.57e-14 74.7
Msa0107880 AT3G25180.1 30.675 163 103 5 275 431 300 458 4.57e-14 74.7
Msa0107880 AT5G35715.1 22.113 407 264 12 87 450 8 404 7.14e-14 73.9
Msa0107880 AT3G48270.1 22.566 452 297 18 35 450 22 456 7.43e-14 73.9
Msa0107880 AT4G22710.1 21.801 422 277 14 69 449 78 487 1.04e-13 73.9
Msa0107880 AT1G28430.1 18.768 357 263 9 119 460 143 487 1.10e-13 73.6
Msa0107880 AT2G45580.2 27.692 195 125 5 272 455 143 332 1.32e-13 72.4
Msa0107880 AT2G45580.1 27.692 195 125 5 272 455 297 486 2.41e-13 72.4
Msa0107880 AT3G20090.1 23.504 234 156 6 236 453 119 345 2.89e-13 71.6
Msa0107880 AT4G22690.1 22.275 422 275 14 69 449 109 518 3.53e-13 72.0
Msa0107880 AT3G53300.1 24.312 436 270 15 42 431 26 447 7.48e-13 70.9
Msa0107880 AT5G42580.1 20.616 422 286 16 65 452 60 466 1.20e-12 70.5
Msa0107880 AT3G14620.1 22.281 377 259 10 89 439 109 477 1.88e-12 69.7
Msa0107880 AT2G25160.2 23.483 379 248 14 12 352 1 375 2.61e-12 68.9
Msa0107880 AT5G63450.1 22.901 393 244 13 84 431 78 456 6.86e-12 68.2
Msa0107880 AT2G24180.1 21.396 444 308 14 42 450 34 471 7.79e-12 67.8
Msa0107880 AT5G63450.2 22.901 393 244 13 84 431 136 514 1.07e-11 67.4
Msa0107880 AT4G13290.1 21.798 445 291 18 44 450 33 458 3.68e-11 65.5

Find 154 sgRNAs with CRISPR-Local

Find 534 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATTTGTCTTTGTCTCTA+TGG 0.210879 1_3:-18890884 None:intergenic
TGTCTCATTAGGCCTATAAA+TGG 0.250262 1_3:-18899700 None:intergenic
TTCTTTAGAGTTATCTTTAC+TGG 0.255766 1_3:-18899489 None:intergenic
CATCTCTTGCAAGGTGTTGA+TGG 0.264559 1_3:-18891594 None:intergenic
GGAAGGACTTTCCAACCTTT+TGG 0.265007 1_3:-18894871 None:intergenic
AGAAAGGAGAGCAGGAATTA+TGG 0.273001 1_3:+18892357 Msa0107880:CDS
AGCTCCATGGAACTTCTTAT+TGG 0.291941 1_3:+18891847 Msa0107880:CDS
CATGCAATTTGTAGCATGTT+AGG 0.292625 1_3:+18899591 Msa0107880:three_prime_UTR
TTTACTGGTAATCCATGTTT+TGG 0.307736 1_3:-18899474 None:intergenic
CTTGTGGAGAAGAAGGAATT+TGG 0.315447 1_3:-18890969 None:intergenic
CCTATCATCTTCTCTTTGCT+TGG 0.320756 1_3:-18891422 None:intergenic
CTATCCTTCCCCTCCTTCAA+TGG 0.335930 1_3:+18890853 Msa0107880:CDS
AATTATGGTGGTGGGTTGTT+GGG 0.341580 1_3:+18892372 Msa0107880:CDS
GAATTATGGTGGTGGGTTGT+TGG 0.345665 1_3:+18892371 Msa0107880:CDS
CCAAATGGCATATATGTGTT+TGG 0.353790 1_3:-18895420 None:intergenic
AATGTTTATAAAATTGTAAA+GGG 0.365557 1_3:+18899819 Msa0107880:three_prime_UTR
AATGGAGATGGAATTCAATA+TGG 0.368593 1_3:+18899438 Msa0107880:CDS
TGTTGAAAGAACAAAGCTTC+TGG 0.384343 1_3:-18891446 None:intergenic
TTGCACTTCTTAATGTCTCT+TGG 0.386421 1_3:-18894786 None:intergenic
GTTGAGTGTACAAAACAATA+AGG 0.392066 1_3:-18890741 None:intergenic
AGGTGGCAAGTTGTGGGAAA+TGG 0.393836 1_3:+18899420 Msa0107880:intron
CCAAACACATATATGCCATT+TGG 0.398411 1_3:+18895420 Msa0107880:CDS
CACCTTGCAAGAGATGAAAA+AGG 0.400822 1_3:+18891601 Msa0107880:CDS
TTCTTATTGGAAGGCATTGA+AGG 0.410259 1_3:+18891860 Msa0107880:CDS
ACATATATGCCATTTGGAAA+TGG 0.411541 1_3:+18895426 Msa0107880:CDS
ATCATCTTCTCTTTGCTTGG+AGG 0.417369 1_3:-18891419 None:intergenic
GTTTGACCCTTCAAGATTTG+AGG 0.417850 1_3:+18894945 Msa0107880:CDS
TTAAGGGGTGTCGGTGTGTA+AGG 0.419174 1_3:-18890594 None:intergenic
AAATGTTTATAAAATTGTAA+AGG 0.419928 1_3:+18899818 Msa0107880:three_prime_UTR
TATTGTATAGTGAAAGTTAA+GGG 0.422547 1_3:-18890610 None:intergenic
CATGTGTTCTAGTGCTGCTT+AGG 0.422811 1_3:-18890551 None:intergenic
GGGAAAGTCGTGGACTTTCA+TGG 0.427875 1_3:+18893454 Msa0107880:CDS
TCAATGGGTTGGCCTTACTT+TGG 0.431131 1_3:+18890918 Msa0107880:CDS
ATTCTTACCTCAAATCTTGA+AGG 0.432768 1_3:-18894952 None:intergenic
TCTTTGCTTGGAGGGTATGT+TGG 0.436270 1_3:-18891410 None:intergenic
TATGGTGTTTCCACCATTGA+AGG 0.436495 1_3:-18890866 None:intergenic
TTTAAAATTACCTGTATGAA+AGG 0.442438 1_3:-18895515 None:intergenic
TGAAATAAAAGAGATGGAAA+TGG 0.445191 1_3:+18891767 Msa0107880:CDS
TGCTTTAGGTGGCAAGTTGT+GGG 0.446990 1_3:+18899414 Msa0107880:intron
TTGCTTTAGGTGGCAAGTTG+TGG 0.450644 1_3:+18899413 Msa0107880:intron
GTCTCATTAGGCCTATAAAT+GGG 0.454968 1_3:-18899699 None:intergenic
TTTCTGCCTTGTGGAGAAGA+AGG 0.456190 1_3:-18890976 None:intergenic
AAGAGAATTGTATCATTGCT+TGG 0.456903 1_3:+18891797 Msa0107880:CDS
ACCATCTCACCCTTTCATAC+AGG 0.462924 1_3:+18895505 Msa0107880:CDS
GCATGACAATGTCAATCTCT+TGG 0.463011 1_3:+18892530 Msa0107880:CDS
CAAGTGGCTGATAATATCAT+TGG 0.463195 1_3:+18892447 Msa0107880:CDS
CATAGGTGGCAAAAGGGAGT+TGG 0.464144 1_3:-18890519 None:intergenic
AAATAAGATGCAAACTTGCT+AGG 0.465808 1_3:+18893433 Msa0107880:CDS
AAGAGGAGCAATATAATGAA+AGG 0.466239 1_3:-18890825 None:intergenic
ACATAATGTTTATACATACA+TGG 0.467030 1_3:-18899756 None:intergenic
GGCAGATGCCCTTCACAAGC+AGG 0.468177 1_3:+18893487 Msa0107880:CDS
CCAAGCAAAGAGAAGATGAT+AGG 0.468196 1_3:+18891422 Msa0107880:CDS
CAAGGTTACTCCATTCCAAA+AGG 0.468405 1_3:+18894856 Msa0107880:CDS
TCATCTTCTCTTTGCTTGGA+GGG 0.468509 1_3:-18891418 None:intergenic
GTTACTCCATTCCAAAAGGT+TGG 0.469052 1_3:+18894860 Msa0107880:CDS
GTGGCTGCAAATTCAGCCTT+TGG 0.469714 1_3:+18891744 Msa0107880:CDS
TCTTCTCCACAAGGCAGAAA+AGG 0.474222 1_3:+18890979 Msa0107880:CDS
AGACAAATCTAAACAAGAAT+CGG 0.474443 1_3:-18890799 None:intergenic
TAGAAAGAAGAAAGGAGAGC+AGG 0.475073 1_3:+18892349 Msa0107880:CDS
GAATAGATAGTGATGAATAT+AGG 0.476642 1_3:-18890665 None:intergenic
ATAGGTGGCAAAAGGGAGTT+GGG 0.476820 1_3:-18890518 None:intergenic
GAGGATAATAGAAAGAAGAA+AGG 0.477259 1_3:+18892341 Msa0107880:CDS
ATATTGTATAGTGAAAGTTA+AGG 0.484448 1_3:-18890611 None:intergenic
GACTTTCATGGGAGGATACC+AGG 0.485602 1_3:+18893466 Msa0107880:CDS
GTTAGAGATGTGGAGTTACA+AGG 0.486806 1_3:+18894838 Msa0107880:CDS
AATGTTTCATAGGTGGCAAA+AGG 0.491722 1_3:-18890526 None:intergenic
AATATTGATGAAGGCAAGGA+AGG 0.493298 1_3:+18892299 Msa0107880:intron
TCTTATCCTTTGAAGCTCCA+TGG 0.496082 1_3:+18891834 Msa0107880:CDS
GGGTCAAACTTGTGTGGTTG+AGG 0.499290 1_3:-18894931 None:intergenic
TTAGCTATTTATAGAGGGAA+AGG 0.499471 1_3:-18890700 None:intergenic
CCCATTGGCTGCATTATGCA+TGG 0.500537 1_3:+18899732 Msa0107880:three_prime_UTR
GTTGTGTTAGCTATTTATAG+AGG 0.500748 1_3:-18890706 None:intergenic
TGCTTAGGAAAATGTTTCAT+AGG 0.501808 1_3:-18890536 None:intergenic
CCACAGCTAGTGTTCTAACA+TGG 0.502575 1_3:+18892493 Msa0107880:CDS
GCTTGTGAAGGGCATCTGCC+TGG 0.502887 1_3:-18893484 None:intergenic
AGAGGAGCAATATAATGAAA+GGG 0.504519 1_3:-18890824 None:intergenic
AATAAGATGCAAACTTGCTA+GGG 0.509966 1_3:+18893434 Msa0107880:CDS
GAAGTTCCATGGAGCTTCAA+AGG 0.510494 1_3:-18891840 None:intergenic
TTAAAATTACCTGTATGAAA+GGG 0.510930 1_3:-18895514 None:intergenic
CCACTTGAGAATCAGTTAGT+TGG 0.513926 1_3:-18892431 None:intergenic
TAAGGCCAACCCATTGAACC+AGG 0.514931 1_3:-18890912 None:intergenic
ATTGTATCATTGCTTGGAGA+AGG 0.516728 1_3:+18891803 Msa0107880:CDS
ATGGTTCTATTAGCCCAAGT+TGG 0.517928 1_3:-18891575 None:intergenic
TTGAGGGTCTCTCCAAAGTA+AGG 0.518210 1_3:-18890930 None:intergenic
CAAAACAATAAGGTGAAAGA+TGG 0.521743 1_3:-18890731 None:intergenic
GAGGGAAAGGGAATGAGAAG+TGG 0.522931 1_3:-18890687 None:intergenic
GAGAGCAGGAATTATGGTGG+TGG 0.528220 1_3:+18892363 Msa0107880:CDS
GGTCAAACTTGTGTGGTTGA+GGG 0.530002 1_3:-18894930 None:intergenic
ATATTCAAGACACACATACT+AGG 0.530311 1_3:+18891314 Msa0107880:CDS
GGAAAGTCGTGGACTTTCAT+GGG 0.532326 1_3:+18893455 Msa0107880:CDS
TGTGGAGAGTTCAGAAAATG+AGG 0.533472 1_3:+18899556 Msa0107880:intron
CCATGGAACTTCTTATTGGA+AGG 0.536358 1_3:+18891851 Msa0107880:CDS
TCAGAAAATGAGGGCAAAGT+GGG 0.538699 1_3:+18899566 Msa0107880:three_prime_UTR
CCATGCATAATGCAGCCAAT+GGG 0.539739 1_3:-18899732 None:intergenic
TAGCTATTTATAGAGGGAAA+GGG 0.540603 1_3:-18890699 None:intergenic
TTGAACTAGCTTCTTTAGCA+TGG 0.542478 1_3:-18891483 None:intergenic
GGAATTCTGTTGAGAGGCAA+AGG 0.543619 1_3:+18892393 Msa0107880:CDS
AGCTTAGCAAGCTCACTACC+AGG 0.548207 1_3:-18895462 None:intergenic
TAGTGAGCTTGCTAAGCTTG+AGG 0.549149 1_3:+18895467 Msa0107880:CDS
AATGGAGTCCACTCTTGTCC+TGG 0.549474 1_3:+18895444 Msa0107880:CDS
AGCACTGCTCTAGCTGCCTC+AGG 0.552029 1_3:-18891362 None:intergenic
CCTTCCAATAAGAAGTTCCA+TGG 0.552684 1_3:-18891851 None:intergenic
GAGTGGACTCCATTTCCAAA+TGG 0.556423 1_3:-18895435 None:intergenic
CAAGTTGTGGGAAATGGAGA+TGG 0.556760 1_3:+18899426 Msa0107880:CDS
AAAGGGTGAGATGGTGAAGG+AGG 0.557982 1_3:-18895497 None:intergenic
TCCACCATTGAAGGAGGGGA+AGG 0.559133 1_3:-18890857 None:intergenic
TTGTATCATTGCTTGGAGAA+GGG 0.560306 1_3:+18891804 Msa0107880:CDS
GAATACTTCTAAAGAGTGGA+AGG 0.563830 1_3:-18894888 None:intergenic
ATGTTTCATAGGTGGCAAAA+GGG 0.566914 1_3:-18890525 None:intergenic
GCCATGCATAATGCAGCCAA+TGG 0.568445 1_3:-18899733 None:intergenic
TTCTTACCTCAAATCTTGAA+GGG 0.569330 1_3:-18894951 None:intergenic
CAAATTCCTTCTTCTCCACA+AGG 0.570163 1_3:+18890970 Msa0107880:CDS
GTGTTTCCACCATTGAAGGA+GGG 0.570215 1_3:-18890862 None:intergenic
TTGTGTTAGCTATTTATAGA+GGG 0.576967 1_3:-18890705 None:intergenic
TGTTTCCACCATTGAAGGAG+GGG 0.577883 1_3:-18890861 None:intergenic
TTCAGAAAATGAGGGCAAAG+TGG 0.580473 1_3:+18899565 Msa0107880:three_prime_UTR
AGAGCAGGAATTATGGTGGT+GGG 0.584862 1_3:+18892364 Msa0107880:CDS
GGTGTTTCCACCATTGAAGG+AGG 0.585053 1_3:-18890863 None:intergenic
TCCTTCCCCTCCTTCAATGG+TGG 0.586673 1_3:+18890856 Msa0107880:CDS
TAGTGAAAGTTAAGGGGTGT+CGG 0.588100 1_3:-18890603 None:intergenic
TAGAGAAGCAGTTAGAGATG+TGG 0.588913 1_3:+18894828 Msa0107880:CDS
TTAGGAAAATGTTTCATAGG+TGG 0.590225 1_3:-18890533 None:intergenic
TGATGAATACTTCTAAAGAG+TGG 0.590871 1_3:-18894892 None:intergenic
AAGGAGAGCAGGAATTATGG+TGG 0.600653 1_3:+18892360 Msa0107880:CDS
CATAATGTTTATACATACAT+GGG 0.601772 1_3:-18899755 None:intergenic
GGCATATATGTGTTTGGTCG+AGG 0.601844 1_3:-18895414 None:intergenic
GAGACAAAACTAGTTCCCAT+TGG 0.602347 1_3:+18899717 Msa0107880:three_prime_UTR
CTTTGGTGAAATAAAAGAGA+TGG 0.612381 1_3:+18891761 Msa0107880:CDS
CCAACTAACTGATTCTCAAG+TGG 0.617753 1_3:+18892431 Msa0107880:CDS
ATTGTATAGTGAAAGTTAAG+GGG 0.618407 1_3:-18890609 None:intergenic
AACAATAAGGTGAAAGATGG+CGG 0.619078 1_3:-18890728 None:intergenic
ACCTGTATGAAAGGGTGAGA+TGG 0.620275 1_3:-18895506 None:intergenic
GCTCACTACCAGGACAAGAG+TGG 0.624894 1_3:-18895452 None:intergenic
GCAGATGCCCTTCACAAGCA+GGG 0.625434 1_3:+18893488 Msa0107880:CDS
CACAGCTAGTGTTCTAACAT+GGG 0.626984 1_3:+18892494 Msa0107880:CDS
TTGTTGGGAATTCTGTTGAG+AGG 0.627900 1_3:+18892387 Msa0107880:CDS
GAAGCTTTGTTCTTTCAACA+AGG 0.636701 1_3:+18891449 Msa0107880:CDS
TGTGGTTGAGGGAAGAAATG+AGG 0.641955 1_3:-18894919 None:intergenic
GTGGAGAGTTCAGAAAATGA+GGG 0.642115 1_3:+18899557 Msa0107880:intron
ACATGCGTAATGAGTGTCAT+GGG 0.643948 1_3:-18890495 None:intergenic
CCATGTTAGAACACTAGCTG+TGG 0.646833 1_3:-18892493 None:intergenic
ATGAAAGGGTGAGATGGTGA+AGG 0.646984 1_3:-18895500 None:intergenic
CTTGAAGGGTCAAACTTGTG+TGG 0.648197 1_3:-18894937 None:intergenic
ATATATGTGTTTGGTCGAGG+TGG 0.657816 1_3:-18895411 None:intergenic
AGGCCAACCCATTGAACCAG+GGG 0.668986 1_3:-18890910 None:intergenic
AAGGCCAACCCATTGAACCA+GGG 0.669847 1_3:-18890911 None:intergenic
CAGAAAATGAGGGCAAAGTG+GGG 0.670751 1_3:+18899567 Msa0107880:three_prime_UTR
GGACTTGATATCATCACACA+AGG 0.686125 1_3:-18891341 None:intergenic
GACATGCGTAATGAGTGTCA+TGG 0.687149 1_3:-18890496 None:intergenic
AAGTCGTGGACTTTCATGGG+AGG 0.705204 1_3:+18893458 Msa0107880:CDS
AAGTGATGTGAAGAGTTGCA+TGG 0.733822 1_3:-18890775 None:intergenic
GGCCAACCCATTGAACCAGG+GGG 0.740914 1_3:-18890909 None:intergenic
TGTGATGATATCAAGTCCTG+AGG 0.742960 1_3:+18891346 Msa0107880:CDS
AAACTTGCTAGGGAAAGTCG+TGG 0.748039 1_3:+18893444 Msa0107880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTTTATTTATTTTT+TGG + chr1_3:18892269-18892288 Msa0107880:intron 0.0%
!!! ATATATCAATCTTTTAAAAT+TGG + chr1_3:18891971-18891990 Msa0107880:intron 10.0%
!!! TAATATTTTAAAAATCGAAT+CGG - chr1_3:18892212-18892231 None:intergenic 10.0%
!!! TATATATTTTTCCTATTTAT+AGG - chr1_3:18893666-18893685 None:intergenic 10.0%
!!! TTTTAATTACTATTTTACAA+GGG - chr1_3:18893860-18893879 None:intergenic 10.0%
!!! ATTTTAATTACTATTTTACA+AGG - chr1_3:18893861-18893880 None:intergenic 10.0%
!!! TCATTAATTATTTTTATTAG+GGG - chr1_3:18894021-18894040 None:intergenic 10.0%
!!! TGTATTTTTATTTTTTTTGA+GGG - chr1_3:18894326-18894345 None:intergenic 10.0%
!!! TTGTATTTTTATTTTTTTTG+AGG - chr1_3:18894327-18894346 None:intergenic 10.0%
!!! TCATATTAAAATTTTGAATT+TGG + chr1_3:18894581-18894600 Msa0107880:intron 10.0%
!! ATAAATGTTAAATAATAGTT+TGG - chr1_3:18894685-18894704 None:intergenic 10.0%
!! TATATATATACTAATTGTAT+TGG - chr1_3:18896108-18896127 None:intergenic 10.0%
!! TAAATGTACAAATATATTAA+TGG - chr1_3:18896367-18896386 None:intergenic 10.0%
!!! TTTTTTATAAAGTAAAGAAA+GGG - chr1_3:18897046-18897065 None:intergenic 10.0%
!!! TTTTTTTATAAAGTAAAGAA+AGG - chr1_3:18897047-18897066 None:intergenic 10.0%
!!! TGTATTATTTATTTTTTTGA+AGG - chr1_3:18897623-18897642 None:intergenic 10.0%
!! CAAAAAAATAAATAATACAA+TGG + chr1_3:18897624-18897643 Msa0107880:intron 10.0%
!!! TATTCATGTTTTTTTAATTT+AGG + chr1_3:18898057-18898076 Msa0107880:intron 10.0%
!! AATTAATAATAGAAACAAAA+GGG - chr1_3:18898297-18898316 None:intergenic 10.0%
!! AAATTAATAATAGAAACAAA+AGG - chr1_3:18898298-18898317 None:intergenic 10.0%
!!! CATTTAAAGTTTTTTTTAAA+TGG - chr1_3:18898387-18898406 None:intergenic 10.0%
!!! TTTTTCTATTTTTAACATTA+AGG + chr1_3:18898612-18898631 Msa0107880:intron 10.0%
!!! AATATATTTTACAATATCAA+CGG + chr1_3:18899072-18899091 Msa0107880:intron 10.0%
!!! CTATTTTTATTCATAAAAAT+TGG - chr1_3:18899139-18899158 None:intergenic 10.0%
!! AAAAATACAATTAATACTAT+AGG - chr1_3:18899207-18899226 None:intergenic 10.0%
!!! ACATATTTTTTTCAAATAAT+TGG - chr1_3:18899334-18899353 None:intergenic 10.0%
!! AAATGTTTATAAAATTGTAA+AGG + chr1_3:18899818-18899837 Msa0107880:three_prime_UTR 10.0%
!! AATGTTTATAAAATTGTAAA+GGG + chr1_3:18899819-18899838 Msa0107880:three_prime_UTR 10.0%
!! TACTACGATTTAAATATTTA+CGG - chr1_3:18891151-18891170 None:intergenic 15.0%
!! ATTTAAATCGTAGTAAAATA+TGG + chr1_3:18891156-18891175 Msa0107880:intron 15.0%
!!! TTTGATGATTTTGAATTTAA+TGG + chr1_3:18891274-18891293 Msa0107880:intron 15.0%
!! AAATATATCGTTGTAAAATT+AGG + chr1_3:18892142-18892161 Msa0107880:intron 15.0%
!! AAAAAAAACCTCAAATAAAA+TGG + chr1_3:18893232-18893251 Msa0107880:intron 15.0%
!! ATCAAGAAAATAATAAAATC+AGG - chr1_3:18893365-18893384 None:intergenic 15.0%
!! AACCAATGTAATAAATTATA+TGG - chr1_3:18893796-18893815 None:intergenic 15.0%
!!! TTTAATTACTATTTTACAAG+GGG - chr1_3:18893859-18893878 None:intergenic 15.0%
!!! AAAATATTGTCCATTTTTAT+AGG + chr1_3:18893876-18893895 Msa0107880:intron 15.0%
!!! AATATTTTCTTTTGTTATGT+AGG - chr1_3:18894183-18894202 None:intergenic 15.0%
!!! TTTTTTTAAATCTTGTACAT+TGG + chr1_3:18894392-18894411 Msa0107880:intron 15.0%
!!! ATTTTAACTTTTTCTAATAG+TGG - chr1_3:18895565-18895584 None:intergenic 15.0%
!!! ATCTAACAAATGATTTATTT+TGG - chr1_3:18895830-18895849 None:intergenic 15.0%
!! TTTATTAGATGAAATTTAAG+AGG + chr1_3:18895941-18895960 Msa0107880:intron 15.0%
!! ATTTGTACATTTATTGATAA+TGG + chr1_3:18896374-18896393 Msa0107880:intron 15.0%
!! TTTCTTTAGCTAATATATAT+TGG - chr1_3:18896507-18896526 None:intergenic 15.0%
!! GAATGTAAATATCTTTATAA+AGG + chr1_3:18896765-18896784 Msa0107880:intron 15.0%
!!! TATATATGCTTATTTTTGTT+TGG - chr1_3:18896844-18896863 None:intergenic 15.0%
!!! TTTTATATGTATACGTATAT+TGG + chr1_3:18897172-18897191 Msa0107880:intron 15.0%
!! CAATATGAAACTTAAAATTT+AGG - chr1_3:18897355-18897374 None:intergenic 15.0%
!!! TCTAATTTAGTGATTTTAAT+TGG - chr1_3:18897976-18897995 None:intergenic 15.0%
!! ATTAAAAAAACATGAATAGA+AGG - chr1_3:18898055-18898074 None:intergenic 15.0%
!!! TTTTTTAATTTAGGTATTTG+AGG + chr1_3:18898066-18898085 Msa0107880:intron 15.0%
!!! ATTTTCTTTTTTCTTCAAAT+CGG - chr1_3:18898157-18898176 None:intergenic 15.0%
!! ATTAATAATAGAAACAAAAG+GGG - chr1_3:18898296-18898315 None:intergenic 15.0%
!! AATAGGTTCAAAATAATAAA+AGG - chr1_3:18898756-18898775 None:intergenic 15.0%
!!! TTTTATTATTTTGAACCTAT+TGG + chr1_3:18898755-18898774 Msa0107880:intron 15.0%
!! TTTAATGTATTTGATATCAA+GGG - chr1_3:18898814-18898833 None:intergenic 15.0%
!!! TTTTAATGTATTTGATATCA+AGG - chr1_3:18898815-18898834 None:intergenic 15.0%
!! TGCAAAAATAAATTATAACA+TGG - chr1_3:18898924-18898943 None:intergenic 15.0%
!! TTAGATATATTATTCACATA+AGG + chr1_3:18899515-18899534 Msa0107880:intron 15.0%
!! TAGATATATTATTCACATAA+GGG + chr1_3:18899516-18899535 Msa0107880:intron 15.0%
!! TATTGTATAGTGAAAGTTAA+GGG - chr1_3:18890613-18890632 None:intergenic 20.0%
!! ATATTGTATAGTGAAAGTTA+AGG - chr1_3:18890614-18890633 None:intergenic 20.0%
!!! TTTTGTTGTGTTCAATTTTT+CGG - chr1_3:18891088-18891107 None:intergenic 20.0%
!! ACTACGATTTAAATATTTAC+GGG - chr1_3:18891150-18891169 None:intergenic 20.0%
!!! ATTCAAAACCTTTTATATTG+TGG + chr1_3:18891215-18891234 Msa0107880:intron 20.0%
!!! TTTTGAATTTAATGGAACAT+AGG + chr1_3:18891282-18891301 Msa0107880:intron 20.0%
!! TCAACATTGAAATAATTGAA+TGG - chr1_3:18892709-18892728 None:intergenic 20.0%
!! ATTCAATTATTTCAATGTTG+AGG + chr1_3:18892708-18892727 Msa0107880:intron 20.0%
!! TTCAATTATTTCAATGTTGA+GGG + chr1_3:18892709-18892728 Msa0107880:intron 20.0%
!!! TTTTCATTGGTTAAAAACAA+TGG + chr1_3:18892860-18892879 Msa0107880:intron 20.0%
!! AAAAGAAAGTTGTTACAAAA+TGG + chr1_3:18892930-18892949 Msa0107880:intron 20.0%
!! TGTAATATACAGAAATATAG+TGG - chr1_3:18893045-18893064 None:intergenic 20.0%
!! AGAAAATAATAAAATCAGGA+TGG - chr1_3:18893361-18893380 None:intergenic 20.0%
!!! AAATGTATAAGTTGATTACT+TGG + chr1_3:18893558-18893577 Msa0107880:intron 20.0%
!! TATTTATAGGAACAATGAAT+TGG - chr1_3:18893653-18893672 None:intergenic 20.0%
!! AATTCATTGTTCCTATAAAT+AGG + chr1_3:18893652-18893671 Msa0107880:intron 20.0%
!! AGCCATATAATTTATTACAT+TGG + chr1_3:18893791-18893810 Msa0107880:intron 20.0%
!!! TATTACATTGGTTTTTTTAC+AGG + chr1_3:18893803-18893822 Msa0107880:intron 20.0%
!! AAAAAATGGTCCTATAAAAA+TGG - chr1_3:18893889-18893908 None:intergenic 20.0%
!! GTATCTCGTAATTTAAAAAA+TGG - chr1_3:18893903-18893922 None:intergenic 20.0%
!! GGTTATCATTGTATTATTAA+GGG - chr1_3:18893971-18893990 None:intergenic 20.0%
!! TGGTTATCATTGTATTATTA+AGG - chr1_3:18893972-18893991 None:intergenic 20.0%
!! ACATAAACATGAGTTATAAT+AGG - chr1_3:18894651-18894670 None:intergenic 20.0%
!! TTATATTAGATGAGTCATAA+GGG - chr1_3:18894981-18895000 None:intergenic 20.0%
!! TATCCTTATATATTCATGTA+CGG + chr1_3:18895006-18895025 Msa0107880:intron 20.0%
!! TTAAAATTACCTGTATGAAA+GGG - chr1_3:18895517-18895536 None:intergenic 20.0%
!!! TTTAAAATTACCTGTATGAA+AGG - chr1_3:18895518-18895537 None:intergenic 20.0%
!!! TTTTTGTCACAATAAATCTT+TGG - chr1_3:18895856-18895875 None:intergenic 20.0%
!!! AAGACAAACAATTTTGTTAA+AGG - chr1_3:18896156-18896175 None:intergenic 20.0%
!! CCTATAATAAGTAACTAATT+AGG - chr1_3:18896404-18896423 None:intergenic 20.0%
!! CCTAATTAGTTACTTATTAT+AGG + chr1_3:18896401-18896420 Msa0107880:intron 20.0%
!!! TTTCTCTAAAAATAACAACA+GGG - chr1_3:18896742-18896761 None:intergenic 20.0%
!!! TTTTCTCTAAAAATAACAAC+AGG - chr1_3:18896743-18896762 None:intergenic 20.0%
!! TGGTAGAAGAAAAAAAATTA+GGG - chr1_3:18896824-18896843 None:intergenic 20.0%
!! TTGGTAGAAGAAAAAAAATT+AGG - chr1_3:18896825-18896844 None:intergenic 20.0%
!! ATATTTAAGCAAAATTTGTC+TGG + chr1_3:18896884-18896903 Msa0107880:intron 20.0%
!! TATTACTACTACACAAAATA+TGG + chr1_3:18896920-18896939 Msa0107880:intron 20.0%
!!! TAGGACTATTTATATTGATT+TGG + chr1_3:18897007-18897026 Msa0107880:intron 20.0%
!!! TTCTAAGATTACAAATAGAA+TGG + chr1_3:18897591-18897610 Msa0107880:intron 20.0%
!!! TTCCTTTCATTAATTTGATA+AGG - chr1_3:18897692-18897711 None:intergenic 20.0%
!!! ATTTTTGTTATGTAATGAAG+CGG - chr1_3:18898210-18898229 None:intergenic 20.0%
!!! ATGTTTTTGATGATTTTGTT+TGG - chr1_3:18898249-18898268 None:intergenic 20.0%
!!! AATGTAATTTGATTAGTCTA+TGG - chr1_3:18898345-18898364 None:intergenic 20.0%
!! AATCATGTTTCTTAGTTTAA+AGG - chr1_3:18898558-18898577 None:intergenic 20.0%
!! ATGATTAGAAGAAAGTTATT+AGG + chr1_3:18898572-18898591 Msa0107880:intron 20.0%
!! TAAAATTGCAAAATACCAAT+AGG - chr1_3:18898773-18898792 None:intergenic 20.0%
!! AAATTATAACATGGAAAAGA+GGG - chr1_3:18898915-18898934 None:intergenic 20.0%
!! TAAATTATAACATGGAAAAG+AGG - chr1_3:18898916-18898935 None:intergenic 20.0%
!! TTTATTCATAAAAATTGGCA+AGG - chr1_3:18899134-18899153 None:intergenic 20.0%
!!! AAATATTATACACACTCTTT+TGG - chr1_3:18899175-18899194 None:intergenic 20.0%
!!! TGTTTCTGTCAAAAAAAAAA+AGG + chr1_3:18899649-18899668 Msa0107880:intron 20.0%
!! CATAATGTTTATACATACAT+GGG - chr1_3:18899758-18899777 None:intergenic 20.0%
!! ACATAATGTTTATACATACA+TGG - chr1_3:18899759-18899778 None:intergenic 20.0%
! ATTGTATAGTGAAAGTTAAG+GGG - chr1_3:18890612-18890631 None:intergenic 25.0%
! GAATAGATAGTGATGAATAT+AGG - chr1_3:18890668-18890687 None:intergenic 25.0%
! TTGTGTTAGCTATTTATAGA+GGG - chr1_3:18890708-18890727 None:intergenic 25.0%
! AGACAAATCTAAACAAGAAT+CGG - chr1_3:18890802-18890821 None:intergenic 25.0%
! ATTTACATGATTCTAAGTTG+CGG + chr1_3:18891113-18891132 Msa0107880:intron 25.0%
! ATATTGCACCACAATATAAA+AGG - chr1_3:18891226-18891245 None:intergenic 25.0%
! AATTTAATGGAACATAGGTA+TGG + chr1_3:18891287-18891306 Msa0107880:intron 25.0%
!! GAACCAATTTTTGTACAATT+TGG - chr1_3:18891556-18891575 None:intergenic 25.0%
!!! TTTATAGTATGCTTTTGAAG+TGG + chr1_3:18891725-18891744 Msa0107880:intron 25.0%
! TGAAATAAAAGAGATGGAAA+TGG + chr1_3:18891767-18891786 Msa0107880:CDS 25.0%
!!! TCAAATGGTTTTTCAAACAT+GGG - chr1_3:18892807-18892826 None:intergenic 25.0%
!!! ATTTACGTCCATTTTATTTG+AGG - chr1_3:18893243-18893262 None:intergenic 25.0%
!!! TTTTTTTTTAACAAGCCTGT+TGG - chr1_3:18893601-18893620 None:intergenic 25.0%
!!! CCATTTTTATATATGCATCA+AGG - chr1_3:18893690-18893709 None:intergenic 25.0%
! CCTTGATGCATATATAAAAA+TGG + chr1_3:18893687-18893706 Msa0107880:intron 25.0%
! TGTAATAAATTATATGGCTC+AGG - chr1_3:18893790-18893809 None:intergenic 25.0%
! AAAGAGTAAATGAACAAGTT+AGG - chr1_3:18894135-18894154 None:intergenic 25.0%
! CGATAATATGCATTAGAATT+TGG + chr1_3:18894444-18894463 Msa0107880:intron 25.0%
! GTTATATTAGATGAGTCATA+AGG - chr1_3:18894982-18895001 None:intergenic 25.0%
! ATTCCGTACATGAATATATA+AGG - chr1_3:18895012-18895031 None:intergenic 25.0%
! CATATAAGGTTATAGATCAA+TGG + chr1_3:18895122-18895141 Msa0107880:intron 25.0%
!! GATAAACTAATTTGTGTACT+AGG - chr1_3:18895274-18895293 None:intergenic 25.0%
! GTTGCTATAGCTATATATAT+TGG + chr1_3:18895328-18895347 Msa0107880:intron 25.0%
! CTAATAGTGGTATAGTAATT+TGG - chr1_3:18895552-18895571 None:intergenic 25.0%
! AAAATAATTGTACCAAACGT+TGG + chr1_3:18895580-18895599 Msa0107880:intron 25.0%
!!! AGTAATTGATTCGTTAAACT+TGG - chr1_3:18895660-18895679 None:intergenic 25.0%
! GACAAAAAAGAACAACTAAA+TGG + chr1_3:18895868-18895887 Msa0107880:intron 25.0%
!! TTTAACATCTCCAATTTTTG+TGG + chr1_3:18895905-18895924 Msa0107880:intron 25.0%
!! CAAACAATTTTGTTAAAGGT+AGG - chr1_3:18896152-18896171 None:intergenic 25.0%
!!! TTAACGAACGATTTGTTTTA+AGG - chr1_3:18896219-18896238 None:intergenic 25.0%
! CGTTCGTTAAAACTTTAATT+TGG + chr1_3:18896229-18896248 Msa0107880:intron 25.0%
! ATTCATTCAACTACAATACA+AGG - chr1_3:18896459-18896478 None:intergenic 25.0%
! GAATGAATATACATCTTTCT+TGG + chr1_3:18896471-18896490 Msa0107880:intron 25.0%
! TTGCTACTGACAAAAAAAAT+AGG + chr1_3:18896645-18896664 Msa0107880:intron 25.0%
! TTGGTGTAATGTTAAAAAGA+CGG + chr1_3:18896687-18896706 Msa0107880:intron 25.0%
! AGAAAAAAAATTAGGGTGAA+AGG - chr1_3:18896817-18896836 None:intergenic 25.0%
!!! TTGCTTTAAGATTAGGTTTT+AGG + chr1_3:18896988-18897007 Msa0107880:intron 25.0%
! CATAGAAAATATAGATGAGA+GGG - chr1_3:18897274-18897293 None:intergenic 25.0%
! TCATAGAAAATATAGATGAG+AGG - chr1_3:18897275-18897294 None:intergenic 25.0%
!! TCTCATCTATATTTTCTATG+AGG + chr1_3:18897274-18897293 Msa0107880:intron 25.0%
!! TCTATATTTTCTATGAGGAT+TGG + chr1_3:18897279-18897298 Msa0107880:intron 25.0%
! TTGGATTCATAACAAATTGT+GGG - chr1_3:18897450-18897469 None:intergenic 25.0%
!!! ATCTACAAAAGAAAGTGTTA+GGG - chr1_3:18897479-18897498 None:intergenic 25.0%
!!! TATCTACAAAAGAAAGTGTT+AGG - chr1_3:18897480-18897499 None:intergenic 25.0%
! ATTGTTACATATATGGAGAT+AGG - chr1_3:18897661-18897680 None:intergenic 25.0%
! TGTCTCAATTGTTACATATA+TGG - chr1_3:18897668-18897687 None:intergenic 25.0%
!! AGCCTTATCAAATTAATGAA+AGG + chr1_3:18897687-18897706 Msa0107880:intron 25.0%
! TATAATAGTCGAAGAATAGA+GGG - chr1_3:18897900-18897919 None:intergenic 25.0%
! ATATAATAGTCGAAGAATAG+AGG - chr1_3:18897901-18897920 None:intergenic 25.0%
! TATCATAACACATATGGAAA+TGG - chr1_3:18898095-18898114 None:intergenic 25.0%
!!! TTTTTGTTATGTAATGAAGC+GGG - chr1_3:18898209-18898228 None:intergenic 25.0%
!!! ACAGTGTAAATTGTTTTACA+CGG + chr1_3:18898668-18898687 Msa0107880:intron 25.0%
! ATTAGTATAATATGAGACAG+AGG + chr1_3:18899255-18899274 Msa0107880:intron 25.0%
! TTATCCATTCAAAATACAAG+AGG + chr1_3:18899288-18899307 Msa0107880:intron 25.0%
!!! TTCTTTAGAGTTATCTTTAC+TGG - chr1_3:18899492-18899511 None:intergenic 25.0%
! ATATATTATTCACATAAGGG+TGG + chr1_3:18899519-18899538 Msa0107880:intron 25.0%
! TATATTATTCACATAAGGGT+GGG + chr1_3:18899520-18899539 Msa0107880:intron 25.0%
TTAGGAAAATGTTTCATAGG+TGG - chr1_3:18890536-18890555 None:intergenic 30.0%
TGCTTAGGAAAATGTTTCAT+AGG - chr1_3:18890539-18890558 None:intergenic 30.0%
TAGCTATTTATAGAGGGAAA+GGG - chr1_3:18890702-18890721 None:intergenic 30.0%
TTAGCTATTTATAGAGGGAA+AGG - chr1_3:18890703-18890722 None:intergenic 30.0%
GTTGTGTTAGCTATTTATAG+AGG - chr1_3:18890709-18890728 None:intergenic 30.0%
CAAAACAATAAGGTGAAAGA+TGG - chr1_3:18890734-18890753 None:intergenic 30.0%
GTTGAGTGTACAAAACAATA+AGG - chr1_3:18890744-18890763 None:intergenic 30.0%
AGAGGAGCAATATAATGAAA+GGG - chr1_3:18890827-18890846 None:intergenic 30.0%
AAGAGGAGCAATATAATGAA+AGG - chr1_3:18890828-18890847 None:intergenic 30.0%
AACATTTGTCTTTGTCTCTA+TGG - chr1_3:18890887-18890906 None:intergenic 30.0%
!! ATTTTGAGTGTAGAGTTTGA+GGG - chr1_3:18890949-18890968 None:intergenic 30.0%
ATATTCAAGACACACATACT+AGG + chr1_3:18891314-18891333 Msa0107880:CDS 30.0%
GGACCAAATTGTACAAAAAT+TGG + chr1_3:18891550-18891569 Msa0107880:CDS 30.0%
! TACAAAAATTGGTTCCAACT+TGG + chr1_3:18891561-18891580 Msa0107880:CDS 30.0%
! ACAAAAATTGGTTCCAACTT+GGG + chr1_3:18891562-18891581 Msa0107880:CDS 30.0%
!! CATCTCTTTTATTTCACCAA+AGG - chr1_3:18891763-18891782 None:intergenic 30.0%
CTTTGGTGAAATAAAAGAGA+TGG + chr1_3:18891761-18891780 Msa0107880:CDS 30.0%
AAGAGAATTGTATCATTGCT+TGG + chr1_3:18891797-18891816 Msa0107880:CDS 30.0%
TTACACAATGATGCATCTAA+TGG - chr1_3:18891922-18891941 None:intergenic 30.0%
GGTGAAATGAATATTGATGA+AGG + chr1_3:18892290-18892309 Msa0107880:intron 30.0%
AATGAATATTGATGAAGGCA+AGG + chr1_3:18892295-18892314 Msa0107880:intron 30.0%
!!! AGGTTTTGAATGAGAGTATA+AGG + chr1_3:18892319-18892338 Msa0107880:CDS 30.0%
!! TTTTGAATGAGAGTATAAGG+AGG + chr1_3:18892322-18892341 Msa0107880:CDS 30.0%
GAGGATAATAGAAAGAAGAA+AGG + chr1_3:18892341-18892360 Msa0107880:CDS 30.0%
AAAGAGTAGTGATGTTTGAA+CGG + chr1_3:18892628-18892647 Msa0107880:intron 30.0%
CATTGAAAATTTCACTGGAA+GGG - chr1_3:18892662-18892681 None:intergenic 30.0%
! ATGGAGTAGTGGAAAATAAA+TGG + chr1_3:18892738-18892757 Msa0107880:intron 30.0%
ATAAATGGTTTAGATCTCAC+TGG + chr1_3:18892753-18892772 Msa0107880:intron 30.0%
!! CTCAAATGGTTTTTCAAACA+TGG - chr1_3:18892808-18892827 None:intergenic 30.0%
TCATCAAAAGTTGTCTCAAA+TGG - chr1_3:18892822-18892841 None:intergenic 30.0%
! TCTTTTCTCTCTCTTTTCAT+TGG + chr1_3:18892847-18892866 Msa0107880:intron 30.0%
AAAAAGATAGTGCACTTTCA+AGG + chr1_3:18892986-18893005 Msa0107880:intron 30.0%
ATACAGAAATATAGTGGTCA+AGG - chr1_3:18893039-18893058 None:intergenic 30.0%
! AAATAAGATGCAAACTTGCT+AGG + chr1_3:18893433-18893452 Msa0107880:CDS 30.0%
!! AATAAGATGCAAACTTGCTA+GGG + chr1_3:18893434-18893453 Msa0107880:CDS 30.0%
! TTTTAGATGTAATGTCCAAC+AGG + chr1_3:18893583-18893602 Msa0107880:intron 30.0%
TTGTTTCGTAAGATTGAGTT+AGG - chr1_3:18894607-18894626 None:intergenic 30.0%
CACTAACAACCAAGTAAAAT+GGG + chr1_3:18894752-18894771 Msa0107880:intron 30.0%
! TGATGAATACTTCTAAAGAG+TGG - chr1_3:18894895-18894914 None:intergenic 30.0%
TTCTTACCTCAAATCTTGAA+GGG - chr1_3:18894954-18894973 None:intergenic 30.0%
ATTCTTACCTCAAATCTTGA+AGG - chr1_3:18894955-18894974 None:intergenic 30.0%
TCCTTTGTCAGAAACATATA+AGG + chr1_3:18895108-18895127 Msa0107880:intron 30.0%
! ACCTTATATGTTTCTGACAA+AGG - chr1_3:18895112-18895131 None:intergenic 30.0%
AATACTGAATCACCTATCTA+GGG - chr1_3:18895201-18895220 None:intergenic 30.0%
AAATACTGAATCACCTATCT+AGG - chr1_3:18895202-18895221 None:intergenic 30.0%
ACCAATACCATTAAGACATT+AGG + chr1_3:18895354-18895373 Msa0107880:intron 30.0%
CCAATACCATTAAGACATTA+GGG + chr1_3:18895355-18895374 Msa0107880:intron 30.0%
! GACTTAATTGGTTTATGTGA+TGG + chr1_3:18895380-18895399 Msa0107880:intron 30.0%
! ACATATATGCCATTTGGAAA+TGG + chr1_3:18895426-18895445 Msa0107880:CDS 30.0%
AAGAATTAAACACCAACGTT+TGG - chr1_3:18895595-18895614 None:intergenic 30.0%
!!! GTCTCAAACTATTTTTGAGT+TGG + chr1_3:18895687-18895706 Msa0107880:intron 30.0%
! TCACTTGCTTATATCCATTT+TGG - chr1_3:18895741-18895760 None:intergenic 30.0%
ATGGATATAAGCAAGTGATT+TGG + chr1_3:18895743-18895762 Msa0107880:intron 30.0%
GTTGAGATATCCACAAAAAT+TGG - chr1_3:18895918-18895937 None:intergenic 30.0%
TTTCATCATCGTTTACTTTC+TGG - chr1_3:18895997-18896016 None:intergenic 30.0%
! CTTATCTCTCAAGCTTTTAT+TGG + chr1_3:18896031-18896050 Msa0107880:intron 30.0%
AGGGATTTATTAAACTGTTG+AGG - chr1_3:18896076-18896095 None:intergenic 30.0%
! TACTAATTGTATTGGTGTAG+TGG - chr1_3:18896100-18896119 None:intergenic 30.0%
CTTAAGCTAAATCACTTGAT+TGG - chr1_3:18896183-18896202 None:intergenic 30.0%
!! AAAATTAGTTTGTCTCCTAG+TGG + chr1_3:18896326-18896345 Msa0107880:intron 30.0%
!! AAATTAGTTTGTCTCCTAGT+GGG + chr1_3:18896327-18896346 Msa0107880:intron 30.0%
ATTCAACTACAATACAAGGA+AGG - chr1_3:18896455-18896474 None:intergenic 30.0%
AAGAAAATAGTGTGTAGAGT+CGG + chr1_3:18896521-18896540 Msa0107880:intron 30.0%
GAAATACATGATCATTGATG+AGG - chr1_3:18896549-18896568 None:intergenic 30.0%
TTAACATTACACCAAGACTT+TGG - chr1_3:18896682-18896701 None:intergenic 30.0%
! AAGGTCTCTTTTACTTTGAT+AGG + chr1_3:18896784-18896803 Msa0107880:intron 30.0%
! AGGTCTCTTTTACTTTGATA+GGG + chr1_3:18896785-18896804 Msa0107880:intron 30.0%
AATCTTAAAGCAAAGAACAC+TGG - chr1_3:18896981-18897000 None:intergenic 30.0%
!! GTGTTCTTTGCTTTAAGATT+AGG + chr1_3:18896981-18897000 Msa0107880:intron 30.0%
TTAGTTAAGTGGCTACAAAA+AGG - chr1_3:18897123-18897142 None:intergenic 30.0%
CTTGGATTCATAACAAATTG+TGG - chr1_3:18897451-18897470 None:intergenic 30.0%
!! TCTACAAAAGAAAGTGTTAG+GGG - chr1_3:18897478-18897497 None:intergenic 30.0%
ATTAATGAAAGGAATGCTTG+TGG + chr1_3:18897698-18897717 Msa0107880:intron 30.0%
ATAATAGTCGAAGAATAGAG+GGG - chr1_3:18897899-18897918 None:intergenic 30.0%
ATGCAGTATCATAACACATA+TGG - chr1_3:18898101-18898120 None:intergenic 30.0%
!! TTGATTAGTCTATGGTTGTT+GGG - chr1_3:18898337-18898356 None:intergenic 30.0%
!! TTTGATTAGTCTATGGTTGT+TGG - chr1_3:18898338-18898357 None:intergenic 30.0%
AGATAAGCTACATGATTTAG+AGG + chr1_3:18898453-18898472 Msa0107880:intron 30.0%
GATAAGCTACATGATTTAGA+GGG + chr1_3:18898454-18898473 Msa0107880:intron 30.0%
AGGCTAAAATACATACAAGT+AGG - chr1_3:18898736-18898755 None:intergenic 30.0%
GGAAAAGAGGGATATAAATT+TGG - chr1_3:18898903-18898922 None:intergenic 30.0%
!!! TTCTCTGACATTTTTTGTGT+CGG - chr1_3:18899039-18899058 None:intergenic 30.0%
AAATTGGCAAGGATGATTAA+GGG - chr1_3:18899123-18899142 None:intergenic 30.0%
AAAATTGGCAAGGATGATTA+AGG - chr1_3:18899124-18899143 None:intergenic 30.0%
AATGGAGATGGAATTCAATA+TGG + chr1_3:18899438-18899457 Msa0107880:CDS 30.0%
! TTTACTGGTAATCCATGTTT+TGG - chr1_3:18899477-18899496 None:intergenic 30.0%
! GAGATTCTTTTCCCATTTAT+AGG + chr1_3:18899688-18899707 Msa0107880:three_prime_UTR 30.0%
ATGTTTCATAGGTGGCAAAA+GGG - chr1_3:18890528-18890547 None:intergenic 35.0%
AATGTTTCATAGGTGGCAAA+AGG - chr1_3:18890529-18890548 None:intergenic 35.0%
AACAATAAGGTGAAAGATGG+CGG - chr1_3:18890731-18890750 None:intergenic 35.0%
!! GATTTTGAGTGTAGAGTTTG+AGG - chr1_3:18890950-18890969 None:intergenic 35.0%
TGTTGAAAGAACAAAGCTTC+TGG - chr1_3:18891449-18891468 None:intergenic 35.0%
!! GAAGCTTTGTTCTTTCAACA+AGG + chr1_3:18891449-18891468 Msa0107880:CDS 35.0%
! TTGAACTAGCTTCTTTAGCA+TGG - chr1_3:18891486-18891505 None:intergenic 35.0%
!!! ACAGAGTTTTTAAGTGTGGA+AGG - chr1_3:18891521-18891540 None:intergenic 35.0%
!!! AGAGACAGAGTTTTTAAGTG+TGG - chr1_3:18891525-18891544 None:intergenic 35.0%
TAAAAACTCTGTCTCTCATG+TGG + chr1_3:18891529-18891548 Msa0107880:CDS 35.0%
!! AACCTTTTTCATCTCTTGCA+AGG - chr1_3:18891606-18891625 None:intergenic 35.0%
ATTGTATCATTGCTTGGAGA+AGG + chr1_3:18891803-18891822 Msa0107880:CDS 35.0%
TTGTATCATTGCTTGGAGAA+GGG + chr1_3:18891804-18891823 Msa0107880:CDS 35.0%
!! TTCTTATTGGAAGGCATTGA+AGG + chr1_3:18891860-18891879 Msa0107880:CDS 35.0%
GTCAATTCAACTAGTTGAAC+TGG + chr1_3:18892186-18892205 Msa0107880:intron 35.0%
AATATTGATGAAGGCAAGGA+AGG + chr1_3:18892299-18892318 Msa0107880:intron 35.0%
CAAGTGGCTGATAATATCAT+TGG + chr1_3:18892447-18892466 Msa0107880:CDS 35.0%
AAGAGTAGTGATGTTTGAAC+GGG + chr1_3:18892629-18892648 Msa0107880:intron 35.0%
CCATTGAAAATTTCACTGGA+AGG - chr1_3:18892663-18892682 None:intergenic 35.0%
! CCTTCCAGTGAAATTTTCAA+TGG + chr1_3:18892660-18892679 Msa0107880:intron 35.0%
CTCTCCATTGAAAATTTCAC+TGG - chr1_3:18892667-18892686 None:intergenic 35.0%
! TATTTTCCACTACTCCATGT+GGG - chr1_3:18892736-18892755 None:intergenic 35.0%
! TTATTTTCCACTACTCCATG+TGG - chr1_3:18892737-18892756 None:intergenic 35.0%
ACAATGGAGAGAGAAAAATG+AGG + chr1_3:18892876-18892895 Msa0107880:intron 35.0%
AAATGAGGAGAGAGAATAAG+AGG + chr1_3:18892891-18892910 Msa0107880:intron 35.0%
GGTAAATAAGTGAGTGTATG+AGG + chr1_3:18893007-18893026 Msa0107880:intron 35.0%
! TATTTTACCCTGCTTGTGAA+GGG - chr1_3:18893498-18893517 None:intergenic 35.0%
!! TTATTTTACCCTGCTTGTGA+AGG - chr1_3:18893499-18893518 None:intergenic 35.0%
ATACAATGATAACCAGAGCT+CGG + chr1_3:18893977-18893996 Msa0107880:intron 35.0%
GAGTATAATTGTTGGGATGT+AGG - chr1_3:18894208-18894227 None:intergenic 35.0%
GGGGTATGAGTATAATTGTT+GGG - chr1_3:18894215-18894234 None:intergenic 35.0%
! AGGGGTATGAGTATAATTGT+TGG - chr1_3:18894216-18894235 None:intergenic 35.0%
CATACCCCTACAAATAATTG+AGG + chr1_3:18894227-18894246 Msa0107880:intron 35.0%
TAATTGAGGCCACCATAAAT+TGG + chr1_3:18894241-18894260 Msa0107880:intron 35.0%
! AATCTTGTACATTGGCTAAG+AGG + chr1_3:18894400-18894419 Msa0107880:intron 35.0%
CAAAATTTACCAGTGATGAG+AGG + chr1_3:18894481-18894500 Msa0107880:intron 35.0%
CAAAATCCGTTAGATCATCA+TGG - chr1_3:18894547-18894566 None:intergenic 35.0%
GCACTAACAACCAAGTAAAA+TGG + chr1_3:18894751-18894770 Msa0107880:intron 35.0%
AACCAAGTAAAATGGGAATC+AGG + chr1_3:18894759-18894778 Msa0107880:intron 35.0%
! TACCTGATTCCCATTTTACT+TGG - chr1_3:18894764-18894783 None:intergenic 35.0%
TTGCACTTCTTAATGTCTCT+TGG - chr1_3:18894789-18894808 None:intergenic 35.0%
! GAATACTTCTAAAGAGTGGA+AGG - chr1_3:18894891-18894910 None:intergenic 35.0%
! ATTTTCATGTAGCTACCAAG+AGG + chr1_3:18895073-18895092 Msa0107880:intron 35.0%
! TTTTCATGTAGCTACCAAGA+GGG + chr1_3:18895074-18895093 Msa0107880:intron 35.0%
GGATAAAATATAACCCCTCT+TGG - chr1_3:18895091-18895110 None:intergenic 35.0%
ATACTGAATCACCTATCTAG+GGG - chr1_3:18895200-18895219 None:intergenic 35.0%
CCCTAATGTCTTAATGGTAT+TGG - chr1_3:18895358-18895377 None:intergenic 35.0%
AGTCAACCCTAATGTCTTAA+TGG - chr1_3:18895364-18895383 None:intergenic 35.0%
! GACATTAGGGTTGACTTAAT+TGG + chr1_3:18895368-18895387 Msa0107880:intron 35.0%
CCAAATGGCATATATGTGTT+TGG - chr1_3:18895423-18895442 None:intergenic 35.0%
CCAAACACATATATGCCATT+TGG + chr1_3:18895420-18895439 Msa0107880:CDS 35.0%
! GTGGTATAGTAATTTGGTGA+GGG - chr1_3:18895546-18895565 None:intergenic 35.0%
! AGTGGTATAGTAATTTGGTG+AGG - chr1_3:18895547-18895566 None:intergenic 35.0%
AAGTCTACTAGACACCAAAA+TGG + chr1_3:18895724-18895743 Msa0107880:intron 35.0%
!! AGCAAGTGATTTGGTTTAAG+TGG + chr1_3:18895752-18895771 Msa0107880:intron 35.0%
!! CAAGCTTTTATTGGTAGTCA+TGG + chr1_3:18896040-18896059 Msa0107880:intron 35.0%
! ATTGTATTGGTGTAGTGGAA+GGG - chr1_3:18896095-18896114 None:intergenic 35.0%
! AATTGTATTGGTGTAGTGGA+AGG - chr1_3:18896096-18896115 None:intergenic 35.0%
AATCGAATTTCGCATCAGTA+GGG + chr1_3:18896272-18896291 Msa0107880:intron 35.0%
!! AATTAGTTTGTCTCCTAGTG+GGG + chr1_3:18896328-18896347 Msa0107880:intron 35.0%
AGAAAATAGTGTGTAGAGTC+GGG + chr1_3:18896522-18896541 Msa0107880:intron 35.0%
ATTTCATACATACGTGTACG+TGG + chr1_3:18896564-18896583 Msa0107880:intron 35.0%
TGATGTGTTAAGGAAACGTT+TGG - chr1_3:18896612-18896631 None:intergenic 35.0%
ACATGTGCAATGATGTGTTA+AGG - chr1_3:18896622-18896641 None:intergenic 35.0%
CCACTTAACTAATGAACCAA+CGG + chr1_3:18897131-18897150 Msa0107880:intron 35.0%
CACTTAACTAATGAACCAAC+GGG + chr1_3:18897132-18897151 Msa0107880:intron 35.0%
TCTGAGTTCACAAGCAAATT+TGG + chr1_3:18897215-18897234 Msa0107880:intron 35.0%
!!! GTGAGGTTTTGAGTTATTCT+GGG - chr1_3:18897241-18897260 None:intergenic 35.0%
!!! TGTGAGGTTTTGAGTTATTC+TGG - chr1_3:18897242-18897261 None:intergenic 35.0%
! GTTGTTGGATCGATTTCAAA+TGG - chr1_3:18897419-18897438 None:intergenic 35.0%
TAACAAATTGTGGGTAACTG+TGG - chr1_3:18897441-18897460 None:intergenic 35.0%
TTGACTATACTCTAGCATCA+TGG - chr1_3:18897738-18897757 None:intergenic 35.0%
! TGGTGTCGAGTTAAAATTGT+TGG - chr1_3:18897769-18897788 None:intergenic 35.0%
TGTTACAAAGTTGTGTGGTA+AGG - chr1_3:18897837-18897856 None:intergenic 35.0%
! ACTAACTTTGGAAGCATGAA+AGG - chr1_3:18898124-18898143 None:intergenic 35.0%
! TGCTTCCAAAGTTAGTTTGA+AGG + chr1_3:18898128-18898147 Msa0107880:intron 35.0%
AGAAGAGATGAAGAAGAATG+AGG + chr1_3:18898487-18898506 Msa0107880:intron 35.0%
AGGATAAGCGTCAAGATAAA+AGG + chr1_3:18898507-18898526 Msa0107880:intron 35.0%
AGCGTCAAGATAAAAGGAAA+AGG + chr1_3:18898513-18898532 Msa0107880:intron 35.0%
GCGTCAAGATAAAAGGAAAA+GGG + chr1_3:18898514-18898533 Msa0107880:intron 35.0%
CGTCAAGATAAAAGGAAAAG+GGG + chr1_3:18898515-18898534 Msa0107880:intron 35.0%
AAACCATTCAAATGCTGAAG+TGG - chr1_3:18898879-18898898 None:intergenic 35.0%
!! GACACCTCTTGTATTTTGAA+TGG - chr1_3:18899295-18899314 None:intergenic 35.0%
!! TGTACTCATCCATGTTTTGA+TGG + chr1_3:18899388-18899407 Msa0107880:intron 35.0%
AAAGCAACACCATCAAAACA+TGG - chr1_3:18899400-18899419 None:intergenic 35.0%
!!! TGTTTTGATGGTGTTGCTTT+AGG + chr1_3:18899400-18899419 Msa0107880:intron 35.0%
CATGCAATTTGTAGCATGTT+AGG + chr1_3:18899591-18899610 Msa0107880:three_prime_UTR 35.0%
GTCTCATTAGGCCTATAAAT+GGG - chr1_3:18899702-18899721 None:intergenic 35.0%
TGTCTCATTAGGCCTATAAA+TGG - chr1_3:18899703-18899722 None:intergenic 35.0%
!!! GGAACTAGTTTTGTCTCATT+AGG - chr1_3:18899714-18899733 None:intergenic 35.0%
ACATGCGTAATGAGTGTCAT+GGG - chr1_3:18890498-18890517 None:intergenic 40.0%
! TAGTGAAAGTTAAGGGGTGT+CGG - chr1_3:18890606-18890625 None:intergenic 40.0%
AAGTGATGTGAAGAGTTGCA+TGG - chr1_3:18890778-18890797 None:intergenic 40.0%
GGGGAAGGATAGTAAAAAAG+AGG - chr1_3:18890845-18890864 None:intergenic 40.0%
TATGGTGTTTCCACCATTGA+AGG - chr1_3:18890869-18890888 None:intergenic 40.0%
AAAGACAAATGTTTACCCCC+TGG + chr1_3:18890894-18890913 Msa0107880:CDS 40.0%
CTTGTGGAGAAGAAGGAATT+TGG - chr1_3:18890972-18890991 None:intergenic 40.0%
CAAATTCCTTCTTCTCCACA+AGG + chr1_3:18890970-18890989 Msa0107880:CDS 40.0%
! TGTATACCTTTTCTGCCTTG+TGG - chr1_3:18890988-18891007 None:intergenic 40.0%
AGTACGTATCTCTCGTTTCA+TGG + chr1_3:18891061-18891080 Msa0107880:intron 40.0%
GTAGTAAAATATGGCCGATG+TGG + chr1_3:18891165-18891184 Msa0107880:intron 40.0%
TACTGCAATTTCGACCACAT+CGG - chr1_3:18891182-18891201 None:intergenic 40.0%
GGACTTGATATCATCACACA+AGG - chr1_3:18891344-18891363 None:intergenic 40.0%
TGTGATGATATCAAGTCCTG+AGG + chr1_3:18891346-18891365 Msa0107880:CDS 40.0%
TCATCTTCTCTTTGCTTGGA+GGG - chr1_3:18891421-18891440 None:intergenic 40.0%
ATCATCTTCTCTTTGCTTGG+AGG - chr1_3:18891422-18891441 None:intergenic 40.0%
CCTATCATCTTCTCTTTGCT+TGG - chr1_3:18891425-18891444 None:intergenic 40.0%
CCAAGCAAAGAGAAGATGAT+AGG + chr1_3:18891422-18891441 Msa0107880:CDS 40.0%
AAGTGTGGAAGGTGAAAAAG+AGG - chr1_3:18891510-18891529 None:intergenic 40.0%
! ATGGTTCTATTAGCCCAAGT+TGG - chr1_3:18891578-18891597 None:intergenic 40.0%
CACCTTGCAAGAGATGAAAA+AGG + chr1_3:18891601-18891620 Msa0107880:CDS 40.0%
!! TCTTATCCTTTGAAGCTCCA+TGG + chr1_3:18891834-18891853 Msa0107880:CDS 40.0%
AGCTCCATGGAACTTCTTAT+TGG + chr1_3:18891847-18891866 Msa0107880:CDS 40.0%
CCTTCCAATAAGAAGTTCCA+TGG - chr1_3:18891854-18891873 None:intergenic 40.0%
CCATGGAACTTCTTATTGGA+AGG + chr1_3:18891851-18891870 Msa0107880:CDS 40.0%
! AAGATTGAACCGAGTTGAAC+TGG - chr1_3:18892118-18892137 None:intergenic 40.0%
TAGAAAGAAGAAAGGAGAGC+AGG + chr1_3:18892349-18892368 Msa0107880:CDS 40.0%
AGAAAGGAGAGCAGGAATTA+TGG + chr1_3:18892357-18892376 Msa0107880:CDS 40.0%
!! AATTATGGTGGTGGGTTGTT+GGG + chr1_3:18892372-18892391 Msa0107880:CDS 40.0%
TTGTTGGGAATTCTGTTGAG+AGG + chr1_3:18892387-18892406 Msa0107880:CDS 40.0%
CCACTTGAGAATCAGTTAGT+TGG - chr1_3:18892434-18892453 None:intergenic 40.0%
! CCAACTAACTGATTCTCAAG+TGG + chr1_3:18892431-18892450 Msa0107880:CDS 40.0%
CACAGCTAGTGTTCTAACAT+GGG + chr1_3:18892494-18892513 Msa0107880:CDS 40.0%
GCATGACAATGTCAATCTCT+TGG + chr1_3:18892530-18892549 Msa0107880:CDS 40.0%
! ATTTTCCACTACTCCATGTG+GGG - chr1_3:18892735-18892754 None:intergenic 40.0%
TTGGTCAGTGTCAAATCTGT+TGG - chr1_3:18893634-18893653 None:intergenic 40.0%
TTAATATTAGAGCCGAGCTC+TGG - chr1_3:18893992-18894011 None:intergenic 40.0%
GTGGCCTCAATTATTTGTAG+GGG - chr1_3:18894234-18894253 None:intergenic 40.0%
GGTGGCCTCAATTATTTGTA+GGG - chr1_3:18894235-18894254 None:intergenic 40.0%
TGGTGGCCTCAATTATTTGT+AGG - chr1_3:18894236-18894255 None:intergenic 40.0%
! TGGTATCCGGTTTTCACTAT+CGG - chr1_3:18894527-18894546 None:intergenic 40.0%
CGTTAGATCATCATGGTATC+CGG - chr1_3:18894540-18894559 None:intergenic 40.0%
CGGATACCATGATGATCTAA+CGG + chr1_3:18894538-18894557 Msa0107880:intron 40.0%
TAGAGAAGCAGTTAGAGATG+TGG + chr1_3:18894828-18894847 Msa0107880:CDS 40.0%
GTTAGAGATGTGGAGTTACA+AGG + chr1_3:18894838-18894857 Msa0107880:CDS 40.0%
CAAGGTTACTCCATTCCAAA+AGG + chr1_3:18894856-18894875 Msa0107880:CDS 40.0%
GTTACTCCATTCCAAAAGGT+TGG + chr1_3:18894860-18894879 Msa0107880:CDS 40.0%
!! GACTTTCCAACCTTTTGGAA+TGG - chr1_3:18894869-18894888 None:intergenic 40.0%
GTTTGACCCTTCAAGATTTG+AGG + chr1_3:18894945-18894964 Msa0107880:CDS 40.0%
TTTCATGTAGCTACCAAGAG+GGG + chr1_3:18895075-18895094 Msa0107880:intron 40.0%
ATATATGTGTTTGGTCGAGG+TGG - chr1_3:18895414-18895433 None:intergenic 40.0%
AACCAAACGAATCGAACTTG+AGG - chr1_3:18895631-18895650 None:intergenic 40.0%
CAATCGAATTTCGCATCAGT+AGG + chr1_3:18896271-18896290 Msa0107880:intron 40.0%
GGATAGTGTTCCTTAAGATG+TGG + chr1_3:18896422-18896441 Msa0107880:intron 40.0%
TGTTCCTTAAGATGTGGAAG+TGG + chr1_3:18896428-18896447 Msa0107880:intron 40.0%
CGTATAGATCTCCAAAGTCT+TGG + chr1_3:18896668-18896687 Msa0107880:intron 40.0%
AAGACGGTCTTAAATTCGAG+AGG + chr1_3:18896703-18896722 Msa0107880:intron 40.0%
TGGAAATAGACACACGCATA+TGG + chr1_3:18896940-18896959 Msa0107880:intron 40.0%
!! CCGTTGGTTCATTAGTTAAG+TGG - chr1_3:18897134-18897153 None:intergenic 40.0%
ACTCAAAACCTCACACTAGT+AGG + chr1_3:18897247-18897266 Msa0107880:intron 40.0%
!!! TTTTCTATGAGGATTGGCTG+CGG + chr1_3:18897285-18897304 Msa0107880:intron 40.0%
TGATTATGCAGAGCTACATG+TGG - chr1_3:18897789-18897808 None:intergenic 40.0%
AAAGTTGTGTGGTAAGGACA+TGG - chr1_3:18897831-18897850 None:intergenic 40.0%
CCTTGTGTTACAAAGTTGTG+TGG - chr1_3:18897842-18897861 None:intergenic 40.0%
CCACACAACTTTGTAACACA+AGG + chr1_3:18897839-18897858 Msa0107880:intron 40.0%
GGTCTCCTTCAAACTAACTT+TGG - chr1_3:18898136-18898155 None:intergenic 40.0%
TTGTTATGTAATGAAGCGGG+TGG - chr1_3:18898206-18898225 None:intergenic 40.0%
! TGGTTGTTGGGATGATCTTT+TGG - chr1_3:18898325-18898344 None:intergenic 40.0%
TCACCACTTCAGCATTTGAA+TGG + chr1_3:18898873-18898892 Msa0107880:intron 40.0%
!! TTTGATGGTGTTGCTTTAGG+TGG + chr1_3:18899403-18899422 Msa0107880:intron 40.0%
TCACATAAGGGTGGGAATTT+AGG + chr1_3:18899528-18899547 Msa0107880:intron 40.0%
! GTGGGAATTTAGGACTTATG+TGG + chr1_3:18899538-18899557 Msa0107880:intron 40.0%
TGTGGAGAGTTCAGAAAATG+AGG + chr1_3:18899556-18899575 Msa0107880:intron 40.0%
GTGGAGAGTTCAGAAAATGA+GGG + chr1_3:18899557-18899576 Msa0107880:intron 40.0%
TTCAGAAAATGAGGGCAAAG+TGG + chr1_3:18899565-18899584 Msa0107880:three_prime_UTR 40.0%
TCAGAAAATGAGGGCAAAGT+GGG + chr1_3:18899566-18899585 Msa0107880:three_prime_UTR 40.0%
GAGACAAAACTAGTTCCCAT+TGG + chr1_3:18899717-18899736 Msa0107880:three_prime_UTR 40.0%
GACATGCGTAATGAGTGTCA+TGG - chr1_3:18890499-18890518 None:intergenic 45.0%
ATAGGTGGCAAAAGGGAGTT+GGG - chr1_3:18890521-18890540 None:intergenic 45.0%
!! CATGTGTTCTAGTGCTGCTT+AGG - chr1_3:18890554-18890573 None:intergenic 45.0%
TGTTTCCACCATTGAAGGAG+GGG - chr1_3:18890864-18890883 None:intergenic 45.0%
GTGTTTCCACCATTGAAGGA+GGG - chr1_3:18890865-18890884 None:intergenic 45.0%
ATGTTTACCCCCTGGTTCAA+TGG + chr1_3:18890902-18890921 Msa0107880:CDS 45.0%
TGTTTACCCCCTGGTTCAAT+GGG + chr1_3:18890903-18890922 Msa0107880:CDS 45.0%
!! TCAATGGGTTGGCCTTACTT+TGG + chr1_3:18890918-18890937 Msa0107880:CDS 45.0%
TTGAGGGTCTCTCCAAAGTA+AGG - chr1_3:18890933-18890952 None:intergenic 45.0%
TTTCTGCCTTGTGGAGAAGA+AGG - chr1_3:18890979-18890998 None:intergenic 45.0%
TCTTCTCCACAAGGCAGAAA+AGG + chr1_3:18890979-18890998 Msa0107880:CDS 45.0%
! TCTTTGCTTGGAGGGTATGT+TGG - chr1_3:18891413-18891432 None:intergenic 45.0%
!! CATCTCTTGCAAGGTGTTGA+TGG - chr1_3:18891597-18891616 None:intergenic 45.0%
GAAGTTCCATGGAGCTTCAA+AGG - chr1_3:18891843-18891862 None:intergenic 45.0%
! GAGTTGAACTGGTCTAACTG+CGG - chr1_3:18892107-18892126 None:intergenic 45.0%
GCAGTTAGACCAGTTCAACT+CGG + chr1_3:18892106-18892125 Msa0107880:intron 45.0%
AAGGAGAGCAGGAATTATGG+TGG + chr1_3:18892360-18892379 Msa0107880:CDS 45.0%
AGAGCAGGAATTATGGTGGT+GGG + chr1_3:18892364-18892383 Msa0107880:CDS 45.0%
!! GAATTATGGTGGTGGGTTGT+TGG + chr1_3:18892371-18892390 Msa0107880:CDS 45.0%
GGAATTCTGTTGAGAGGCAA+AGG + chr1_3:18892393-18892412 Msa0107880:CDS 45.0%
CCATGTTAGAACACTAGCTG+TGG - chr1_3:18892496-18892515 None:intergenic 45.0%
CCACAGCTAGTGTTCTAACA+TGG + chr1_3:18892493-18892512 Msa0107880:CDS 45.0%
ATCAGATTCTCTCCTGTGAC+TGG - chr1_3:18892784-18892803 None:intergenic 45.0%
!! AAACTTGCTAGGGAAAGTCG+TGG + chr1_3:18893444-18893463 Msa0107880:CDS 45.0%
GGAAAGTCGTGGACTTTCAT+GGG + chr1_3:18893455-18893474 Msa0107880:CDS 45.0%
TTGAGGCCACCATAAATTGG+AGG + chr1_3:18894244-18894263 Msa0107880:intron 45.0%
TTATCATCAGAGCCGTTCCT+TGG - chr1_3:18894298-18894317 None:intergenic 45.0%
AGGAAAACTCCTCTCATCAC+TGG - chr1_3:18894493-18894512 None:intergenic 45.0%
! GAGGAGTTTTCCTACTAGTG+TGG + chr1_3:18894500-18894519 Msa0107880:intron 45.0%
TGTGGTCCGATAGTGAAAAC+CGG + chr1_3:18894518-18894537 Msa0107880:intron 45.0%
! GGAAGGACTTTCCAACCTTT+TGG - chr1_3:18894874-18894893 None:intergenic 45.0%
TGTGGTTGAGGGAAGAAATG+AGG - chr1_3:18894922-18894941 None:intergenic 45.0%
GGTCAAACTTGTGTGGTTGA+GGG - chr1_3:18894933-18894952 None:intergenic 45.0%
CTTGAAGGGTCAAACTTGTG+TGG - chr1_3:18894940-18894959 None:intergenic 45.0%
GGCATATATGTGTTTGGTCG+AGG - chr1_3:18895417-18895436 None:intergenic 45.0%
! GAGTGGACTCCATTTCCAAA+TGG - chr1_3:18895438-18895457 None:intergenic 45.0%
!! TAGTGAGCTTGCTAAGCTTG+AGG + chr1_3:18895467-18895486 Msa0107880:CDS 45.0%
ATGAAAGGGTGAGATGGTGA+AGG - chr1_3:18895503-18895522 None:intergenic 45.0%
ACCATCTCACCCTTTCATAC+AGG + chr1_3:18895505-18895524 Msa0107880:CDS 45.0%
ACCTGTATGAAAGGGTGAGA+TGG - chr1_3:18895509-18895528 None:intergenic 45.0%
! CACCTCAAGTTCGATTCGTT+TGG + chr1_3:18895626-18895645 Msa0107880:intron 45.0%
AGGACCACTTCCACATCTTA+AGG - chr1_3:18896435-18896454 None:intergenic 45.0%
TTGTGGGTAACTGTGGTTGT+TGG - chr1_3:18897434-18897453 None:intergenic 45.0%
!! GAAAGTGTTAGGGGCAAACT+TGG - chr1_3:18897469-18897488 None:intergenic 45.0%
AAGGAATGCTTGTGGAACCA+AGG + chr1_3:18897706-18897725 Msa0107880:intron 45.0%
TAGCATCATGGAGTTTGCCT+TGG - chr1_3:18897726-18897745 None:intergenic 45.0%
GGACATGGTGAAATGTAGTG+TGG - chr1_3:18897816-18897835 None:intergenic 45.0%
! GTGTCGGAGAGACTAAGTTT+TGG - chr1_3:18899023-18899042 None:intergenic 45.0%
! TTGCTTTAGGTGGCAAGTTG+TGG + chr1_3:18899413-18899432 Msa0107880:intron 45.0%
! TGCTTTAGGTGGCAAGTTGT+GGG + chr1_3:18899414-18899433 Msa0107880:intron 45.0%
CAAGTTGTGGGAAATGGAGA+TGG + chr1_3:18899426-18899445 Msa0107880:CDS 45.0%
!!! CCATGTTTTGGCACAGGAAA+AGG - chr1_3:18899465-18899484 None:intergenic 45.0%
! CCTTTTCCTGTGCCAAAACA+TGG + chr1_3:18899462-18899481 Msa0107880:CDS 45.0%
!!! GGTAATCCATGTTTTGGCAC+AGG - chr1_3:18899471-18899490 None:intergenic 45.0%
CAGAAAATGAGGGCAAAGTG+GGG + chr1_3:18899567-18899586 Msa0107880:three_prime_UTR 45.0%
CCATGCATAATGCAGCCAAT+GGG - chr1_3:18899735-18899754 None:intergenic 45.0%
!!! ATAAATAAATTTTTTTGTTT+TGG + chr1_3:18891697-18891716 Msa0107880:intron 5.0%
!!! ATCATTAATTATTTTTATTA+GGG - chr1_3:18894022-18894041 None:intergenic 5.0%
!!! TATCATTAATTATTTTTATT+AGG - chr1_3:18894023-18894042 None:intergenic 5.0%
!!! TTTAAAATATTCTTTTAATT+TGG - chr1_3:18898845-18898864 None:intergenic 5.0%
CATAGGTGGCAAAAGGGAGT+TGG - chr1_3:18890522-18890541 None:intergenic 50.0%
!! TTAAGGGGTGTCGGTGTGTA+AGG - chr1_3:18890597-18890616 None:intergenic 50.0%
GAGGGAAAGGGAATGAGAAG+TGG - chr1_3:18890690-18890709 None:intergenic 50.0%
CTATCCTTCCCCTCCTTCAA+TGG + chr1_3:18890853-18890872 Msa0107880:CDS 50.0%
GGTGTTTCCACCATTGAAGG+AGG - chr1_3:18890866-18890885 None:intergenic 50.0%
AAGGCCAACCCATTGAACCA+GGG - chr1_3:18890914-18890933 None:intergenic 50.0%
TAAGGCCAACCCATTGAACC+AGG - chr1_3:18890915-18890934 None:intergenic 50.0%
GTGGCTGCAAATTCAGCCTT+TGG + chr1_3:18891744-18891763 Msa0107880:CDS 50.0%
! TGAACTGGTCTAACTGCGGT+TGG - chr1_3:18892103-18892122 None:intergenic 50.0%
GAGAGCAGGAATTATGGTGG+TGG + chr1_3:18892363-18892382 Msa0107880:CDS 50.0%
TCACTGGATTCTCCAGTCAC+AGG + chr1_3:18892769-18892788 Msa0107880:intron 50.0%
TGTCAACTGAGCTATGCTCG+AGG + chr1_3:18893077-18893096 Msa0107880:intron 50.0%
GGGAAAGTCGTGGACTTTCA+TGG + chr1_3:18893454-18893473 Msa0107880:CDS 50.0%
AAGTCGTGGACTTTCATGGG+AGG + chr1_3:18893458-18893477 Msa0107880:CDS 50.0%
GACTTTCATGGGAGGATACC+AGG + chr1_3:18893466-18893485 Msa0107880:CDS 50.0%
TATGGCTCAGGAGCTTAGCT+AGG - chr1_3:18893778-18893797 None:intergenic 50.0%
GCCACCATAAATTGGAGGCT+CGG + chr1_3:18894249-18894268 Msa0107880:intron 50.0%
GGCATGTGCAAGGAGTTCTA+CGG - chr1_3:18894277-18894296 None:intergenic 50.0%
AGAACTCCTTGCACATGCCA+AGG + chr1_3:18894278-18894297 Msa0107880:intron 50.0%
TCCTTGCACATGCCAAGGAA+CGG + chr1_3:18894283-18894302 Msa0107880:intron 50.0%
CACTATCGGACCACACTAGT+AGG - chr1_3:18894513-18894532 None:intergenic 50.0%
GGGTCAAACTTGTGTGGTTG+AGG - chr1_3:18894934-18894953 None:intergenic 50.0%
AATGGAGTCCACTCTTGTCC+TGG + chr1_3:18895444-18895463 Msa0107880:CDS 50.0%
AGCTTAGCAAGCTCACTACC+AGG - chr1_3:18895465-18895484 None:intergenic 50.0%
AAAGGGTGAGATGGTGAAGG+AGG - chr1_3:18895500-18895519 None:intergenic 50.0%
ATATCAGTGCGAAGTCCCGT+TGG - chr1_3:18897150-18897169 None:intergenic 50.0%
TGTAATGAAGCGGGTGGTGT+GGG - chr1_3:18898200-18898219 None:intergenic 50.0%
ATGTAATGAAGCGGGTGGTG+TGG - chr1_3:18898201-18898220 None:intergenic 50.0%
AGGTGGCAAGTTGTGGGAAA+TGG + chr1_3:18899420-18899439 Msa0107880:intron 50.0%
! CCCATTGGCTGCATTATGCA+TGG + chr1_3:18899732-18899751 Msa0107880:three_prime_UTR 50.0%
GCCATGCATAATGCAGCCAA+TGG - chr1_3:18899736-18899755 None:intergenic 50.0%
TCCTTCCCCTCCTTCAATGG+TGG + chr1_3:18890856-18890875 Msa0107880:CDS 55.0%
TCCACCATTGAAGGAGGGGA+AGG - chr1_3:18890860-18890879 None:intergenic 55.0%
TACCCCCTGGTTCAATGGGT+TGG + chr1_3:18890907-18890926 Msa0107880:CDS 55.0%
AGGCCAACCCATTGAACCAG+GGG - chr1_3:18890913-18890932 None:intergenic 55.0%
TCAATGTTGAGGGCCCCACA+TGG + chr1_3:18892719-18892738 Msa0107880:intron 55.0%
GCAGATGCCCTTCACAAGCA+GGG + chr1_3:18893488-18893507 Msa0107880:CDS 55.0%
GCCGAGCCTCCAATTTATGG+TGG - chr1_3:18894253-18894272 None:intergenic 55.0%
GGAGCCGAGCCTCCAATTTA+TGG - chr1_3:18894256-18894275 None:intergenic 55.0%
GCTCACTACCAGGACAAGAG+TGG - chr1_3:18895455-18895474 None:intergenic 55.0%
CCAAGTGACAGATCCCCACT+AGG - chr1_3:18896344-18896363 None:intergenic 55.0%
CCTAGTGGGGATCTGTCACT+TGG + chr1_3:18896341-18896360 Msa0107880:intron 55.0%
GAGAGGGTCCTACTAGTGTG+AGG - chr1_3:18897258-18897277 None:intergenic 55.0%
GGCCAACCCATTGAACCAGG+GGG - chr1_3:18890912-18890931 None:intergenic 60.0%
AGCACTGCTCTAGCTGCCTC+AGG - chr1_3:18891365-18891384 None:intergenic 60.0%
!! GCTTGTGAAGGGCATCTGCC+TGG - chr1_3:18893487-18893506 None:intergenic 60.0%
GGCAGATGCCCTTCACAAGC+AGG + chr1_3:18893487-18893506 Msa0107880:CDS 60.0%
GCCGTTCCTTGGCATGTGCA+AGG - chr1_3:18894287-18894306 None:intergenic 60.0%
AATGAAGCGGGTGGTGTGGG+AGG - chr1_3:18898197-18898216 None:intergenic 60.0%
GAGGGCCCCACATGGAGTAG+TGG + chr1_3:18892727-18892746 Msa0107880:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 18890489 18899854 18890489 ID=Msa0107880;Name=Msa0107880
chr1_3 mRNA 18890489 18899854 18890489 ID=Msa0107880-mRNA-1;Parent=Msa0107880;Name=Msa0107880-mRNA-1;_AED=0.16;_eAED=0.16;_QI=288|1|1|1|0.77|0.7|10|264|478
chr1_3 exon 18890489 18891000 18890489 ID=Msa0107880-mRNA-1:exon:6941;Parent=Msa0107880-mRNA-1
chr1_3 exon 18891304 18891622 18891304 ID=Msa0107880-mRNA-1:exon:6942;Parent=Msa0107880-mRNA-1
chr1_3 exon 18891732 18891881 18891732 ID=Msa0107880-mRNA-1:exon:6943;Parent=Msa0107880-mRNA-1
chr1_3 exon 18892312 18892563 18892312 ID=Msa0107880-mRNA-1:exon:6944;Parent=Msa0107880-mRNA-1
chr1_3 exon 18893420 18893509 18893420 ID=Msa0107880-mRNA-1:exon:6945;Parent=Msa0107880-mRNA-1
chr1_3 exon 18894781 18894966 18894781 ID=Msa0107880-mRNA-1:exon:6946;Parent=Msa0107880-mRNA-1
chr1_3 exon 18895408 18895526 18895408 ID=Msa0107880-mRNA-1:exon:6947;Parent=Msa0107880-mRNA-1
chr1_3 exon 18899422 18899522 18899422 ID=Msa0107880-mRNA-1:exon:6948;Parent=Msa0107880-mRNA-1
chr1_3 exon 18899563 18899638 18899563 ID=Msa0107880-mRNA-1:exon:6949;Parent=Msa0107880-mRNA-1
chr1_3 exon 18899671 18899854 18899671 ID=Msa0107880-mRNA-1:exon:6950;Parent=Msa0107880-mRNA-1
chr1_3 five_prime_UTR 18890489 18890776 18890489 ID=Msa0107880-mRNA-1:five_prime_utr;Parent=Msa0107880-mRNA-1
chr1_3 CDS 18890777 18891000 18890777 ID=Msa0107880-mRNA-1:cds;Parent=Msa0107880-mRNA-1
chr1_3 CDS 18891304 18891622 18891304 ID=Msa0107880-mRNA-1:cds;Parent=Msa0107880-mRNA-1
chr1_3 CDS 18891732 18891881 18891732 ID=Msa0107880-mRNA-1:cds;Parent=Msa0107880-mRNA-1
chr1_3 CDS 18892312 18892563 18892312 ID=Msa0107880-mRNA-1:cds;Parent=Msa0107880-mRNA-1
chr1_3 CDS 18893420 18893509 18893420 ID=Msa0107880-mRNA-1:cds;Parent=Msa0107880-mRNA-1
chr1_3 CDS 18894781 18894966 18894781 ID=Msa0107880-mRNA-1:cds;Parent=Msa0107880-mRNA-1
chr1_3 CDS 18895408 18895526 18895408 ID=Msa0107880-mRNA-1:cds;Parent=Msa0107880-mRNA-1
chr1_3 CDS 18899422 18899518 18899422 ID=Msa0107880-mRNA-1:cds;Parent=Msa0107880-mRNA-1
chr1_3 three_prime_UTR 18899519 18899522 18899519 ID=Msa0107880-mRNA-1:three_prime_utr;Parent=Msa0107880-mRNA-1
chr1_3 three_prime_UTR 18899563 18899638 18899563 ID=Msa0107880-mRNA-1:three_prime_utr;Parent=Msa0107880-mRNA-1
chr1_3 three_prime_UTR 18899671 18899854 18899671 ID=Msa0107880-mRNA-1:three_prime_utr;Parent=Msa0107880-mRNA-1
Gene Sequence

>Msa0107880

ATGCAACTCTTCACATCACTTACCGATTCTTGTTTAGATTTGTCTCTCCCTTTCATTATATTGCTCCTCTTTTTTACTATCCTTCCCCTCCTTCAATGGTGGAAACACCATAGAGACAAAGACAAATGTTTACCCCCTGGTTCAATGGGTTGGCCTTACTTTGGAGAGACCCTCAAACTCTACACTCAAAATCCAAATTCCTTCTTCTCCACAAGGCAGAAAAGGTATGGAGATATATTCAAGACACACATACTAGGTTGTCCTTGTGTGATGATATCAAGTCCTGAGGCAGCTAGAGCAGTGCTTGTGACACAAGCACATCTTTTTAAACCAACATACCCTCCAAGCAAAGAGAAGATGATAGGACCAGAAGCTTTGTTCTTTCAACAAGGTTCTTATCACTCCATGCTAAAGAAGCTAGTTCAAGCCTCTTTTTCACCTTCCACACTTAAAAACTCTGTCTCTCATGTGGACCAAATTGTACAAAAATTGGTTCCAACTTGGGCTAATAGAACCATCAACACCTTGCAAGAGATGAAAAAGTATGCTTTTGAAGTGGCTGCAAATTCAGCCTTTGGTGAAATAAAAGAGATGGAAATGGAAGAAATAAGAGAATTGTATCATTGCTTGGAGAAGGGCTACAATTCTTATCCTTTGAAGCTCCATGGAACTTCTTATTGGAAGGCATTGAAGGCAAGGAAGGTTTTGAATGAGAGTATAAGGAGGATAATAGAAAGAAGAAAGGAGAGCAGGAATTATGGTGGTGGGTTGTTGGGAATTCTGTTGAGAGGCAAAGGTGATGAGAAGATGTACCAACTAACTGATTCTCAAGTGGCTGATAATATCATTGGTGTCATCTTTGCTGCACATGATACCACAGCTAGTGTTCTAACATGGGTTCTAAAGTACTTGCATGACAATGTCAATCTCTTGGAAACTGTCACAAAAGAACAAGAAGAAATAAGATGCAAACTTGCTAGGGAAAGTCGTGGACTTTCATGGGAGGATACCAGGCAGATGCCCTTCACAAGCAGGGTAATCCAAGAGACATTAAGAAGTGCAAGCATATTATCATTCACATTTAGAGAAGCAGTTAGAGATGTGGAGTTACAAGGTTACTCCATTCCAAAAGGTTGGAAAGTCCTTCCACTCTTTAGAAGTATTCATCATTCACCTCATTTCTTCCCTCAACCACACAAGTTTGACCCTTCAAGATTTGAGAATCCACCTCGACCAAACACATATATGCCATTTGGAAATGGAGTCCACTCTTGTCCTGGTAGTGAGCTTGCTAAGCTTGAGGTTCTTGTCCTCCTTCACCATCTCACCCTTTCATACAGGTGGCAAGTTGTGGGAAATGGAGATGGAATTCAATATGGTCCTTTTCCTGTGCCAAAACATGGATTACCAGTAAAGATAACTCTAAAGAAGAGTTAG
Protein sequence

>Msa0107880

MQLFTSLTDSCLDLSLPFIILLLFFTILPLLQWWKHHRDKDKCLPPGSMGWPYFGETLKLYTQNPNSFFSTRQKRYGDIFKTHILGCPCVMISSPEAARAVLVTQAHLFKPTYPPSKEKMIGPEALFFQQGSYHSMLKKLVQASFSPSTLKNSVSHVDQIVQKLVPTWANRTINTLQEMKKYAFEVAANSAFGEIKEMEMEEIRELYHCLEKGYNSYPLKLHGTSYWKALKARKVLNESIRRIIERRKESRNYGGGLLGILLRGKGDEKMYQLTDSQVADNIIGVIFAAHDTTASVLTWVLKYLHDNVNLLETVTKEQEEIRCKLARESRGLSWEDTRQMPFTSRVIQETLRSASILSFTFREAVRDVELQGYSIPKGWKVLPLFRSIHHSPHFFPQPHKFDPSRFENPPRPNTYMPFGNGVHSCPGSELAKLEVLVLLHHLTLSYRWQVVGNGDGIQYGPFPVPKHGLPVKITLKKS*