Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073260 | XP_013468144.1 | 93.697 | 238 | 11 | 4 | 1 | 236 | 1 | 236 | 4.43e-157 | 445 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073260 | A0A072VKM4 | 93.697 | 238 | 11 | 4 | 1 | 236 | 1 | 236 | 2.12e-157 | 445 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0073260 | Msa0121480 | 0.853551 | 2.217340e-61 | -8.615850e-47 |
| Msa0073260 | Msa0184850 | 0.800048 | 1.729904e-48 | -8.615850e-47 |
| Msa0073260 | Msa0185540 | 0.801020 | 1.096214e-48 | -8.615850e-47 |
| Msa0073260 | Msa0339340 | 0.809251 | 2.075710e-50 | -8.615850e-47 |
| Msa0073260 | Msa0385870 | 0.806559 | 7.754803e-50 | -8.615850e-47 |
| Msa0073260 | Msa0476140 | 0.813515 | 2.461510e-51 | -8.615850e-47 |
| Msa0073260 | Msa0568460 | 0.805688 | 1.183102e-49 | -8.615850e-47 |
| Msa0073260 | Msa0598470 | 0.803044 | 4.206445e-49 | -8.615850e-47 |
| Msa0073260 | Msa0798500 | 0.807591 | 4.691231e-50 | -8.615850e-47 |
| Msa0073260 | Msa0808500 | 0.815911 | 7.254544e-52 | -8.615850e-47 |
| Msa0073260 | Msa0927830 | 0.829986 | 3.786468e-55 | -8.615850e-47 |
| Msa0073260 | Msa1029010 | 0.838387 | 2.963604e-57 | -8.615850e-47 |
| Msa0073260 | Msa1240240 | 0.804811 | 1.805505e-49 | -8.615850e-47 |
| Msa0073260 | Msa1376510 | 0.804552 | 2.045039e-49 | -8.615850e-47 |
| Msa0073260 | Msa1387100 | 0.808704 | 2.717044e-50 | -8.615850e-47 |
| Msa0073260 | Msa1439000 | 0.806273 | 8.910394e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073260 | MtrunA17_Chr1g0180531 | 93.697 | 238 | 11 | 4 | 1 | 236 | 1 | 236 | 4.07e-161 | 445 |
| Msa0073260 | MtrunA17_Chr6g0463871 | 94.643 | 56 | 3 | 0 | 128 | 183 | 1 | 56 | 1.90e-34 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073260 | AT2G36895.2 | 62.656 | 241 | 75 | 4 | 1 | 236 | 1 | 231 | 4.28e-105 | 303 |
| Msa0073260 | AT2G36895.1 | 62.397 | 242 | 75 | 5 | 1 | 236 | 1 | 232 | 2.13e-103 | 299 |
| Msa0073260 | AT2G36895.3 | 56.134 | 269 | 75 | 6 | 1 | 236 | 1 | 259 | 3.10e-97 | 285 |
Find 81 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCCAGGGACTTGATA+TGG | 0.196375 | 1_2:-46716150 | Msa0073260:intron |
| TAATTCATGAATGATTAATT+TGG | 0.227552 | 1_2:+46717923 | None:intergenic |
| CTGTTGCAGTACCGTTACTA+TGG | 0.277856 | 1_2:-46714306 | Msa0073260:CDS |
| GGAGGAGGAATGAGTTGCTT+TGG | 0.291316 | 1_2:+46717674 | None:intergenic |
| ACTTTCTGTAGATATATTCT+AGG | 0.300646 | 1_2:-46714201 | Msa0073260:exon |
| CTCTCTTTCGCTTTCTTCAA+TGG | 0.317523 | 1_2:-46717844 | Msa0073260:exon |
| GAGGAGGAATGAGTTGCTTT+GGG | 0.321300 | 1_2:+46717675 | None:intergenic |
| AAGAGAATCTGAATCTGAAT+AGG | 0.338244 | 1_2:+46717808 | None:intergenic |
| GAACCATGTTGCCTCCGATT+TGG | 0.352718 | 1_2:+46716992 | None:intergenic |
| ATCCAATTGTCCGTTCTATC+TGG | 0.359368 | 1_2:-46714064 | Msa0073260:three_prime_UTR |
| TGAGAGGTAGAAGGAGCAAC+AGG | 0.364803 | 1_2:+46717720 | None:intergenic |
| GACTTCTCACAGAAATTCAA+TGG | 0.398474 | 1_2:-46717059 | Msa0073260:intron |
| ACCTAGACAAAGGCCTTGAT+TGG | 0.415493 | 1_2:+46716270 | None:intergenic |
| GTTGTTGAATGAGAAAGATT+TGG | 0.415537 | 1_2:+46717752 | None:intergenic |
| AGAAATTCAATGGGTTTCTC+AGG | 0.422443 | 1_2:-46717049 | Msa0073260:CDS |
| TCTTTCCAGGGACTTGATAT+GGG | 0.428716 | 1_2:-46716149 | Msa0073260:intron |
| CTCGAAGGAATCGTTGTTGT+TGG | 0.431175 | 1_2:+46717653 | None:intergenic |
| TATCTGGCACAATAAATTGT+TGG | 0.446485 | 1_2:-46714048 | Msa0073260:three_prime_UTR |
| CCTTGGTCCGACGATGATAA+CGG | 0.451977 | 1_2:-46717624 | Msa0073260:intron |
| TGCCAGATAGAACGGACAAT+TGG | 0.457449 | 1_2:+46714062 | None:intergenic |
| AGAGAATCTGAATCTGAATA+GGG | 0.461673 | 1_2:+46717809 | None:intergenic |
| AGACGAGGATGAGAGGTAGA+AGG | 0.468888 | 1_2:+46717711 | None:intergenic |
| TGGAGGAGGAATTGTAGAGA+AGG | 0.473722 | 1_2:-46714239 | Msa0073260:CDS |
| AGGCGAAGTGTCTCAGAAGC+TGG | 0.476255 | 1_2:+46714274 | None:intergenic |
| CGGGGCAGATATTTAACACT+GGG | 0.478616 | 1_2:+46713971 | None:intergenic |
| GAATTGTAGAGAAGGTCTAT+TGG | 0.491347 | 1_2:-46714231 | Msa0073260:CDS |
| TTTGGAAGAACGATGAATGA+TGG | 0.491956 | 1_2:+46717770 | None:intergenic |
| CAGTCCGTCAGTGGTGAAGA+AGG | 0.505748 | 1_2:+46717017 | None:intergenic |
| ATTCCTTCGAGTTCTTCCCT+TGG | 0.517845 | 1_2:-46717641 | Msa0073260:CDS |
| TTTACCTTCTTCACCACTGA+CGG | 0.518009 | 1_2:-46717021 | Msa0073260:CDS |
| ACTTCTCACAGAAATTCAAT+GGG | 0.519019 | 1_2:-46717058 | Msa0073260:intron |
| TGTTGCAGTACCGTTACTAT+GGG | 0.522829 | 1_2:-46714305 | Msa0073260:CDS |
| CCTAGACAAAGGCCTTGATT+GGG | 0.524442 | 1_2:+46716271 | None:intergenic |
| GGAATCGTTGTTGTTGGAGG+AGG | 0.526523 | 1_2:+46717659 | None:intergenic |
| AACTACATGGATCCCAATCA+AGG | 0.527063 | 1_2:-46716283 | Msa0073260:CDS |
| ACAGGTGATTGCTGCAGAGA+AGG | 0.530154 | 1_2:-46714365 | Msa0073260:intron |
| TAGAACTTGAAATTTGACTC+TGG | 0.531352 | 1_2:-46714016 | Msa0073260:three_prime_UTR |
| GCACAATAAATTGTTGGTTG+TGG | 0.534770 | 1_2:-46714042 | Msa0073260:three_prime_UTR |
| ATACTGTCTTGGAGCATGGT+GGG | 0.536785 | 1_2:-46716064 | Msa0073260:CDS |
| CGTTATCATCGTCGGACCAA+GGG | 0.543998 | 1_2:+46717625 | None:intergenic |
| GAAGGAATCGTTGTTGTTGG+AGG | 0.547888 | 1_2:+46717656 | None:intergenic |
| ACTGACGGACTGATCCAAAT+CGG | 0.552411 | 1_2:-46717006 | Msa0073260:CDS |
| GGAGGAATGAGTTGCTTTGG+GGG | 0.553111 | 1_2:+46717677 | None:intergenic |
| CCGTTATCATCGTCGGACCA+AGG | 0.555351 | 1_2:+46717624 | None:intergenic |
| CGCCTAGCTGTTAAAAGTGG+AGG | 0.555989 | 1_2:-46714256 | Msa0073260:CDS |
| ATTTATTGTGCCAGATAGAA+CGG | 0.560087 | 1_2:+46714054 | None:intergenic |
| CCCAATCAAGGCCTTTGTCT+AGG | 0.561143 | 1_2:-46716271 | Msa0073260:CDS |
| CGATGAATGATGGAATTGAA+TGG | 0.567336 | 1_2:+46717780 | None:intergenic |
| CTCATGTTTCACAGAAGCAA+GGG | 0.567711 | 1_2:-46716348 | Msa0073260:intron |
| GTATCAAGAGAGCAACTACA+TGG | 0.569947 | 1_2:-46716296 | Msa0073260:CDS |
| CTAGCTGTTAAAAGTGGAGG+AGG | 0.572051 | 1_2:-46714253 | Msa0073260:CDS |
| CTTCGCCTAGCTGTTAAAAG+TGG | 0.572780 | 1_2:-46714259 | Msa0073260:CDS |
| TATATACAGAGTGCACAGAA+TGG | 0.574513 | 1_2:+46714170 | None:intergenic |
| TACTGTCTTGGAGCATGGTG+GGG | 0.575565 | 1_2:-46716063 | Msa0073260:CDS |
| ACGAAGAAGACGAGGATGAG+AGG | 0.584511 | 1_2:+46717704 | None:intergenic |
| TCTCATGTTTCACAGAAGCA+AGG | 0.584656 | 1_2:-46716349 | Msa0073260:intron |
| AGGAGGAATGAGTTGCTTTG+GGG | 0.585072 | 1_2:+46717676 | None:intergenic |
| CAAGATACTGTCTTGGAGCA+TGG | 0.591033 | 1_2:-46716068 | Msa0073260:CDS |
| TCAGAAGACTTGACGCGACG+AGG | 0.594267 | 1_2:+46716970 | None:intergenic |
| CCGGGGCAGATATTTAACAC+TGG | 0.601150 | 1_2:+46713970 | None:intergenic |
| TGTCTTGGAGCATGGTGGGG+AGG | 0.619288 | 1_2:-46716060 | Msa0073260:intron |
| TAACGGTACTGCAACAGTCA+TGG | 0.619563 | 1_2:+46714312 | None:intergenic |
| GATACTGTCTTGGAGCATGG+TGG | 0.619582 | 1_2:-46716065 | Msa0073260:CDS |
| GATCCAAATCGGAGGCAACA+TGG | 0.621305 | 1_2:-46716995 | Msa0073260:CDS |
| GAGCGAACCGTTATCATCGT+CGG | 0.621641 | 1_2:+46717617 | None:intergenic |
| GCTGCAGAGAAGGCAAGCAG+AGG | 0.622884 | 1_2:-46714355 | Msa0073260:CDS |
| GAATTACTTATATATACGTG+TGG | 0.626562 | 1_2:-46717906 | Msa0073260:five_prime_UTR |
| CAAAGAGTGCACCTAGACAA+AGG | 0.629542 | 1_2:+46716260 | None:intergenic |
| TGAATGATGGAATTGAATGG+TGG | 0.640438 | 1_2:+46717783 | None:intergenic |
| GATTGAGATGCTTAGTGATG+TGG | 0.643100 | 1_2:-46716093 | Msa0073260:CDS |
| GATTTGGATCAGTCCGTCAG+TGG | 0.643323 | 1_2:+46717008 | None:intergenic |
| CACTAAGCATCTCAATCGAG+CGG | 0.647776 | 1_2:+46716099 | None:intergenic |
| GGAGGAACGCCCCATAGTAA+CGG | 0.657618 | 1_2:+46714295 | None:intergenic |
| GGACCAAGGGAAGAACTCGA+AGG | 0.665595 | 1_2:+46717638 | None:intergenic |
| TGTGGTGCAAGATACTGTCT+TGG | 0.665794 | 1_2:-46716075 | Msa0073260:CDS |
| GAGAGGTAGAAGGAGCAACA+GGG | 0.668927 | 1_2:+46717721 | None:intergenic |
| GGGGAGAAACGAAGAAGACG+AGG | 0.670848 | 1_2:+46717696 | None:intergenic |
| CGAAGTGTCTCAGAAGCTGG+AGG | 0.672033 | 1_2:+46714277 | None:intergenic |
| GACGGACTGATCCAAATCGG+AGG | 0.686153 | 1_2:-46717003 | Msa0073260:CDS |
| GTTGCAGTACCGTTACTATG+GGG | 0.737622 | 1_2:-46714304 | Msa0073260:CDS |
| GGGGCAGATATTTAACACTG+GGG | 0.786570 | 1_2:+46713972 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAAGTAAAGATTTT+GGG | + | chr1_2:46715078-46715097 | None:intergenic | 10.0% |
| !!! | TTTATTTTAAGTAAAGATTT+TGG | + | chr1_2:46715079-46715098 | None:intergenic | 10.0% |
| !! | AATCTTTACTTAAAATAAAA+TGG | - | chr1_2:46715080-46715099 | Msa0073260:intron | 10.0% |
| !! | TAATTCATGAATGATTAATT+TGG | + | chr1_2:46713987-46714006 | None:intergenic | 15.0% |
| !!! | GCTTTTTATAATTTAAAGAA+TGG | - | chr1_2:46714666-46714685 | Msa0073260:intron | 15.0% |
| !!! | TAAATTTCAACATATGTTTT+GGG | + | chr1_2:46715209-46715228 | None:intergenic | 15.0% |
| !!! | TTAAATTTCAACATATGTTT+TGG | + | chr1_2:46715210-46715229 | None:intergenic | 15.0% |
| !!! | ATGTTGAAATTTAACTTTAT+TGG | - | chr1_2:46715216-46715235 | Msa0073260:intron | 15.0% |
| !!! | AAATGTAAATTTTTGTTTTC+TGG | - | chr1_2:46716536-46716555 | Msa0073260:intron | 15.0% |
| !!! | AATGTAAATTTTTGTTTTCT+GGG | - | chr1_2:46716537-46716556 | Msa0073260:intron | 15.0% |
| !! | ATGAAACAAAATCTAAATAT+TGG | + | chr1_2:46717456-46717475 | None:intergenic | 15.0% |
| !! | AATGTGAAAAATTTGAGAAA+TGG | + | chr1_2:46714033-46714052 | None:intergenic | 20.0% |
| !!! | TCAGATAAAATCATTTTAAC+TGG | + | chr1_2:46714710-46714729 | None:intergenic | 20.0% |
| !! | ACATAAAAAAAACTATCAGT+AGG | + | chr1_2:46714989-46715008 | None:intergenic | 20.0% |
| !! | TTTCTTCAATTGAATACAAA+AGG | + | chr1_2:46715175-46715194 | None:intergenic | 20.0% |
| !!! | AAATTTAACTTTATTGGAAG+AGG | - | chr1_2:46715222-46715241 | Msa0073260:intron | 20.0% |
| !!! | AATTTAACTTTATTGGAAGA+GGG | - | chr1_2:46715223-46715242 | Msa0073260:intron | 20.0% |
| !! | TTAAAAACTAAAGCTGTTAT+TGG | - | chr1_2:46715292-46715311 | Msa0073260:intron | 20.0% |
| !!! | AATGGATTTAAACAATAAGA+TGG | + | chr1_2:46715501-46715520 | None:intergenic | 20.0% |
| !!! | TTCTTTTAGCTATAAAACAA+TGG | - | chr1_2:46715893-46715912 | Msa0073260:intron | 20.0% |
| !!! | TTTTAATGAAACCTGTATTT+TGG | - | chr1_2:46716034-46716053 | Msa0073260:intron | 20.0% |
| !!! | TTTAATGAAACCTGTATTTT+GGG | - | chr1_2:46716035-46716054 | Msa0073260:intron | 20.0% |
| !! | AAACATAATGAAATTGTGAA+AGG | + | chr1_2:46716303-46716322 | None:intergenic | 20.0% |
| !!! | TACGAAATCACTAAAATTTT+AGG | - | chr1_2:46716426-46716445 | Msa0073260:intron | 20.0% |
| !! | ATAGAGTATAACATAAAATC+TGG | - | chr1_2:46716717-46716736 | Msa0073260:intron | 20.0% |
| !!! | GAATTAGCGTAATTTTTTTT+TGG | - | chr1_2:46716809-46716828 | Msa0073260:intron | 20.0% |
| !!! | ATATTATTTTAGGCTAATTC+TGG | + | chr1_2:46716840-46716859 | None:intergenic | 20.0% |
| !!! | AAAATGTTTTCAACATAGTA+AGG | + | chr1_2:46716871-46716890 | None:intergenic | 20.0% |
| !! | AATATTAAGATACTTAGCTA+GGG | + | chr1_2:46717287-46717306 | None:intergenic | 20.0% |
| !! | TAATATTAAGATACTTAGCT+AGG | + | chr1_2:46717288-46717307 | None:intergenic | 20.0% |
| !! | TCTTAATATTAATAAGTAGC+TGG | - | chr1_2:46717297-46717316 | Msa0073260:intron | 20.0% |
| ! | GAATTACTTATATATACGTG+TGG | - | chr1_2:46714001-46714020 | Msa0073260:three_prime_UTR | 25.0% |
| ! | TAATCTTTGAATTTAACGTG+TGG | + | chr1_2:46714375-46714394 | None:intergenic | 25.0% |
| ! | ACACGTTAAATTCAAAGATT+AGG | - | chr1_2:46714374-46714393 | Msa0073260:intron | 25.0% |
| ! | CACGTTAAATTCAAAGATTA+GGG | - | chr1_2:46714375-46714394 | Msa0073260:intron | 25.0% |
| !!! | ATTAATTTGCATGTATAGTG+TGG | - | chr1_2:46714446-46714465 | Msa0073260:intron | 25.0% |
| !! | TTATCTGAAAGTCTGAATTT+TGG | - | chr1_2:46714722-46714741 | Msa0073260:intron | 25.0% |
| !! | TATCTGAAAGTCTGAATTTT+GGG | - | chr1_2:46714723-46714742 | Msa0073260:intron | 25.0% |
| !! | AGATTTATTTGCGTTTTTCA+TGG | - | chr1_2:46714773-46714792 | Msa0073260:intron | 25.0% |
| !! | AATTATGTACTCGTTCTTTT+TGG | - | chr1_2:46715330-46715349 | Msa0073260:intron | 25.0% |
| !!! | GAATCAGCTTTTAACTTTTA+AGG | - | chr1_2:46715423-46715442 | Msa0073260:intron | 25.0% |
| !!! | TTCTTTTAGATTAGCTAAGT+AGG | - | chr1_2:46715534-46715553 | Msa0073260:intron | 25.0% |
| !!! | CTGATATTTTTTAGCAGTTT+GGG | + | chr1_2:46715589-46715608 | None:intergenic | 25.0% |
| ! | AAACTGCTAAAAAATATCAG+CGG | - | chr1_2:46715589-46715608 | Msa0073260:intron | 25.0% |
| !!! | TTTGAGCTTGTTGTTTAATT+AGG | - | chr1_2:46716098-46716117 | Msa0073260:CDS | 25.0% |
| ! | CAGATAAATAGTTCTTCTAA+TGG | + | chr1_2:46716177-46716196 | None:intergenic | 25.0% |
| ! | GTCTAAAGGTTATGATAAAT+TGG | + | chr1_2:46716343-46716362 | None:intergenic | 25.0% |
| ! | TTTACATTTCAGCACAAATT+CGG | + | chr1_2:46716525-46716544 | None:intergenic | 25.0% |
| ! | AGTATAACATAAAATCTGGT+GGG | - | chr1_2:46716721-46716740 | Msa0073260:intron | 25.0% |
| ! | TATCTAGTGATAGAAAAATG+TGG | - | chr1_2:46716750-46716769 | Msa0073260:intron | 25.0% |
| !! | TTTTAATATACCAGTTCTTC+AGG | - | chr1_2:46717134-46717153 | Msa0073260:intron | 25.0% |
| ! | ATAATTCAAACTCCTGTAAT+GGG | + | chr1_2:46717207-46717226 | None:intergenic | 25.0% |
| ! | TTTATGGGTAATAACATGTT+TGG | - | chr1_2:46717324-46717343 | Msa0073260:intron | 25.0% |
| ! | TACTTATTAGCAGCTATTAA+AGG | - | chr1_2:46717368-46717387 | Msa0073260:intron | 25.0% |
| ! | ACTTATTAGCAGCTATTAAA+GGG | - | chr1_2:46717369-46717388 | Msa0073260:intron | 25.0% |
| !!! | CCATATAAAATTAGCTCTAA+TGG | + | chr1_2:46717519-46717538 | None:intergenic | 25.0% |
| !! | CCATTAGAGCTAATTTTATA+TGG | - | chr1_2:46717516-46717535 | Msa0073260:intron | 25.0% |
| ! | ACTTTCTGTAGATATATTCT+AGG | - | chr1_2:46717706-46717725 | Msa0073260:CDS | 25.0% |
| AGAGAATCTGAATCTGAATA+GGG | + | chr1_2:46714101-46714120 | None:intergenic | 30.0% | |
| AAGAGAATCTGAATCTGAAT+AGG | + | chr1_2:46714102-46714121 | None:intergenic | 30.0% | |
| GTTGTTGAATGAGAAAGATT+TGG | + | chr1_2:46714158-46714177 | None:intergenic | 30.0% | |
| !! | TCTCATTTGAAGCACTTTTT+AGG | - | chr1_2:46714585-46714604 | Msa0073260:intron | 30.0% |
| ! | ATCTGAAAGTCTGAATTTTG+GGG | - | chr1_2:46714724-46714743 | Msa0073260:intron | 30.0% |
| ACTTCTCACAGAAATTCAAT+GGG | - | chr1_2:46714849-46714868 | Msa0073260:intron | 30.0% | |
| AATTGAATACAAAAGGAGCT+TGG | + | chr1_2:46715168-46715187 | None:intergenic | 30.0% | |
| ! | AGCTGTTATTGGTGATTATA+AGG | - | chr1_2:46715303-46715322 | Msa0073260:intron | 30.0% |
| AAGAATCTCTGACATTGAAA+TGG | + | chr1_2:46715519-46715538 | None:intergenic | 30.0% | |
| !!! | GCTGATATTTTTTAGCAGTT+TGG | + | chr1_2:46715590-46715609 | None:intergenic | 30.0% |
| AATTTGAATTTCCTCTTTCC+AGG | - | chr1_2:46715745-46715764 | Msa0073260:intron | 30.0% | |
| ATTTGAATTTCCTCTTTCCA+GGG | - | chr1_2:46715746-46715765 | Msa0073260:intron | 30.0% | |
| AAGTGGGATTGTTTATTTAG+TGG | + | chr1_2:46715975-46715994 | None:intergenic | 30.0% | |
| !!! | AAACCTGTATTTTGGGTTAA+CGG | - | chr1_2:46716042-46716061 | Msa0073260:intron | 30.0% |
| AGAACATCAATTAGCATATG+TGG | + | chr1_2:46716124-46716143 | None:intergenic | 30.0% | |
| ATTAAACAAACTCTGATCCT+TGG | - | chr1_2:46716267-46716286 | Msa0073260:CDS | 30.0% | |
| TTAAACAAACTCTGATCCTT+GGG | - | chr1_2:46716268-46716287 | Msa0073260:CDS | 30.0% | |
| ATGAAATTGTGAAAGGAAGT+AGG | + | chr1_2:46716296-46716315 | None:intergenic | 30.0% | |
| TTAGTATTATGAGGGTCTAA+AGG | + | chr1_2:46716357-46716376 | None:intergenic | 30.0% | |
| GTTGGGTTTATATCATCAAT+TGG | - | chr1_2:46716622-46716641 | Msa0073260:intron | 30.0% | |
| TATATCATCAATTGGAGATG+TGG | - | chr1_2:46716630-46716649 | Msa0073260:intron | 30.0% | |
| GAGTATAACATAAAATCTGG+TGG | - | chr1_2:46716720-46716739 | Msa0073260:intron | 30.0% | |
| ! | GGCTTAGGACATATTATTTT+AGG | + | chr1_2:46716850-46716869 | None:intergenic | 30.0% |
| ! | TTTTCAACATAGTAAGGCTT+AGG | + | chr1_2:46716865-46716884 | None:intergenic | 30.0% |
| !!! | TCTGCTTTTAGAACATTCAA+AGG | - | chr1_2:46716930-46716949 | Msa0073260:intron | 30.0% |
| TGATGCTACACAAAAAAACT+AGG | - | chr1_2:46716968-46716987 | Msa0073260:intron | 30.0% | |
| GATGCTACACAAAAAAACTA+GGG | - | chr1_2:46716969-46716988 | Msa0073260:CDS | 30.0% | |
| ! | AAGATCTTAAGGTAGTGTTT+TGG | + | chr1_2:46716998-46717017 | None:intergenic | 30.0% |
| AAACACTACCTTAAGATCTT+TGG | - | chr1_2:46716998-46717017 | Msa0073260:CDS | 30.0% | |
| AGATGTAAGTTTAACATGCT+AGG | + | chr1_2:46717115-46717134 | None:intergenic | 30.0% | |
| AGGTCAATTTCCAATTGTTT+AGG | - | chr1_2:46717154-46717173 | Msa0073260:intron | 30.0% | |
| TTCACAAGATCCTAAACAAT+TGG | + | chr1_2:46717167-46717186 | None:intergenic | 30.0% | |
| TAATTCAAACTCCTGTAATG+GGG | + | chr1_2:46717206-46717225 | None:intergenic | 30.0% | |
| CATAATTCAAACTCCTGTAA+TGG | + | chr1_2:46717208-46717227 | None:intergenic | 30.0% | |
| TATGAAGATTGTTCAATTGC+AGG | + | chr1_2:46717245-46717264 | None:intergenic | 30.0% | |
| ! | ATAAGTAGCTGGAACTTTTA+TGG | - | chr1_2:46717308-46717327 | Msa0073260:intron | 30.0% |
| ! | TAAGTAGCTGGAACTTTTAT+GGG | - | chr1_2:46717309-46717328 | Msa0073260:intron | 30.0% |
| ATAACATGTTTGGAAAATCC+TGG | - | chr1_2:46717334-46717353 | Msa0073260:intron | 30.0% | |
| ATTTATTGTGCCAGATAGAA+CGG | + | chr1_2:46717856-46717875 | None:intergenic | 30.0% | |
| TATCTGGCACAATAAATTGT+TGG | - | chr1_2:46717859-46717878 | Msa0073260:five_prime_UTR | 30.0% | |
| TAGAACTTGAAATTTGACTC+TGG | - | chr1_2:46717891-46717910 | Msa0073260:five_prime_UTR | 30.0% | |
| ! | TGAATGATGGAATTGAATGG+TGG | + | chr1_2:46714127-46714146 | None:intergenic | 35.0% |
| ! | CGATGAATGATGGAATTGAA+TGG | + | chr1_2:46714130-46714149 | None:intergenic | 35.0% |
| TTTGGAAGAACGATGAATGA+TGG | + | chr1_2:46714140-46714159 | None:intergenic | 35.0% | |
| TTGTTGCAAAAAACTGCTTG+AGG | - | chr1_2:46714617-46714636 | Msa0073260:intron | 35.0% | |
| !! | GAATTTTGGGGAAATTGTGT+TGG | - | chr1_2:46714736-46714755 | Msa0073260:intron | 35.0% |
| GACTTCTCACAGAAATTCAA+TGG | - | chr1_2:46714848-46714867 | Msa0073260:intron | 35.0% | |
| ! | AGAAATTCAATGGGTTTCTC+AGG | - | chr1_2:46714858-46714877 | Msa0073260:intron | 35.0% |
| ACTGTTGCAATGTAGCAAAA+AGG | + | chr1_2:46715031-46715050 | None:intergenic | 35.0% | |
| ! | TGCAACAGTTATCTTTTGTC+AGG | - | chr1_2:46715042-46715061 | Msa0073260:intron | 35.0% |
| ACAATAAAAATCTCAGCAGC+TGG | + | chr1_2:46715113-46715132 | None:intergenic | 35.0% | |
| TTGTTCTACATGGAAGACTA+AGG | + | chr1_2:46715387-46715406 | None:intergenic | 35.0% | |
| AGTCTTCCATGTAGAACAAT+TGG | - | chr1_2:46715388-46715407 | Msa0073260:intron | 35.0% | |
| ATGATGCCAATTGTTCTACA+TGG | + | chr1_2:46715397-46715416 | None:intergenic | 35.0% | |
| CAGCAAACGATAACTCATAA+AGG | + | chr1_2:46715718-46715737 | None:intergenic | 35.0% | |
| TGGGATTGTTTATTTAGTGG+TGG | + | chr1_2:46715972-46715991 | None:intergenic | 35.0% | |
| GTGTAGCATCAAATCAAAGT+GGG | + | chr1_2:46715991-46716010 | None:intergenic | 35.0% | |
| !!! | AACCTGTATTTTGGGTTAAC+GGG | - | chr1_2:46716043-46716062 | Msa0073260:intron | 35.0% |
| AGGTTATGATAAATTGGACG+AGG | + | chr1_2:46716337-46716356 | None:intergenic | 35.0% | |
| ! | GGTCTAGCTTAGTATTATGA+GGG | + | chr1_2:46716365-46716384 | None:intergenic | 35.0% |
| ! | TGGTCTAGCTTAGTATTATG+AGG | + | chr1_2:46716366-46716385 | None:intergenic | 35.0% |
| ! | GATTTCGTAGAAAAGTGCAT+GGG | + | chr1_2:46716415-46716434 | None:intergenic | 35.0% |
| ! | TGATTTCGTAGAAAAGTGCA+TGG | + | chr1_2:46716416-46716435 | None:intergenic | 35.0% |
| !!! | TTTCTGGGATTGTGCATTTT+TGG | - | chr1_2:46716552-46716571 | Msa0073260:intron | 35.0% |
| !!! | ATTGTGCATTTTTGGTTCAG+TGG | - | chr1_2:46716560-46716579 | Msa0073260:intron | 35.0% |
| TATGTAACTGGAGAGACTAA+AGG | - | chr1_2:46716654-46716673 | Msa0073260:intron | 35.0% | |
| TGATAGAAAAATGTGGTGCA+TGG | - | chr1_2:46716757-46716776 | Msa0073260:intron | 35.0% | |
| ! | TACCTTAAGATCTTTGGAGA+GGG | - | chr1_2:46717004-46717023 | Msa0073260:CDS | 35.0% |
| TTTGCTGGAACAGCAAATAA+AGG | + | chr1_2:46717092-46717111 | None:intergenic | 35.0% | |
| GTAATTAGTTACCCCATTAC+AGG | - | chr1_2:46717192-46717211 | Msa0073260:intron | 35.0% | |
| TTCAATTGCAGGTGAATGAA+TGG | + | chr1_2:46717234-46717253 | None:intergenic | 35.0% | |
| GATACTTAGCTAGGGAAAAT+AGG | + | chr1_2:46717279-46717298 | None:intergenic | 35.0% | |
| CTCTAATGGTCACAGAATTT+AGG | + | chr1_2:46717505-46717524 | None:intergenic | 35.0% | |
| ! | GCTAATTTTATATGGCACAC+AGG | - | chr1_2:46717524-46717543 | Msa0073260:intron | 35.0% |
| GAATTGTAGAGAAGGTCTAT+TGG | - | chr1_2:46717676-46717695 | Msa0073260:CDS | 35.0% | |
| TATATACAGAGTGCACAGAA+TGG | + | chr1_2:46717740-46717759 | None:intergenic | 35.0% | |
| ! | GCACAATAAATTGTTGGTTG+TGG | - | chr1_2:46717865-46717884 | Msa0073260:five_prime_UTR | 35.0% |
| CTCTCTTTCGCTTTCTTCAA+TGG | - | chr1_2:46714063-46714082 | Msa0073260:three_prime_UTR | 40.0% | |
| !! | TTGATGCAGAAGCTGTTTTG+TGG | - | chr1_2:46714505-46714524 | Msa0073260:intron | 40.0% |
| TTTACCTTCTTCACCACTGA+CGG | - | chr1_2:46714886-46714905 | Msa0073260:intron | 40.0% | |
| ! | ACAATATCAAAGCATCCGAG+TGG | + | chr1_2:46715254-46715273 | None:intergenic | 40.0% |
| TCTCATGTTTCACAGAAGCA+AGG | - | chr1_2:46715558-46715577 | Msa0073260:intron | 40.0% | |
| CTCATGTTTCACAGAAGCAA+GGG | - | chr1_2:46715559-46715578 | Msa0073260:intron | 40.0% | |
| GTATCAAGAGAGCAACTACA+TGG | - | chr1_2:46715611-46715630 | Msa0073260:intron | 40.0% | |
| AACTACATGGATCCCAATCA+AGG | - | chr1_2:46715624-46715643 | Msa0073260:intron | 40.0% | |
| TCTTTCCAGGGACTTGATAT+GGG | - | chr1_2:46715758-46715777 | Msa0073260:intron | 40.0% | |
| GATTGAGATGCTTAGTGATG+TGG | - | chr1_2:46715814-46715833 | Msa0073260:intron | 40.0% | |
| TGGTGGTAAAATGTTGTGCA+TGG | + | chr1_2:46715955-46715974 | None:intergenic | 40.0% | |
| CGTGTAGCATCAAATCAAAG+TGG | + | chr1_2:46715992-46716011 | None:intergenic | 40.0% | |
| !! | GCAAGAGTTCGATTTGTTAG+TGG | - | chr1_2:46716075-46716094 | Msa0073260:CDS | 40.0% |
| CATTGTGTGAGTCAGAAAGT+TGG | + | chr1_2:46716386-46716405 | None:intergenic | 40.0% | |
| ACTTTCTGACTCACACAATG+AGG | - | chr1_2:46716386-46716405 | Msa0073260:intron | 40.0% | |
| ATCACGTATCATTCCTCATC+TGG | - | chr1_2:46716462-46716481 | Msa0073260:intron | 40.0% | |
| AGAGGAATTGAAACCAGATG+AGG | + | chr1_2:46716478-46716497 | None:intergenic | 40.0% | |
| TTCCTCTTCTGCTGAATCAT+CGG | - | chr1_2:46716491-46716510 | Msa0073260:intron | 40.0% | |
| AGTGAGCTATCTGTGAAGTT+GGG | - | chr1_2:46716605-46716624 | Msa0073260:intron | 40.0% | |
| TGGAGATGTGGTTATGTAAC+TGG | - | chr1_2:46716642-46716661 | Msa0073260:intron | 40.0% | |
| AGAGTGGTTGAGAAGAAGAT+GGG | - | chr1_2:46716680-46716699 | Msa0073260:intron | 40.0% | |
| GAAGAAGATGGGGAATGATT+TGG | - | chr1_2:46716691-46716710 | Msa0073260:intron | 40.0% | |
| ! | CTACCTTAAGATCTTTGGAG+AGG | - | chr1_2:46717003-46717022 | Msa0073260:CDS | 40.0% |
| TACCCTCTCCAAAGATCTTA+AGG | + | chr1_2:46717009-46717028 | None:intergenic | 40.0% | |
| ! | ATTTTCTCCACACATCCACA+AGG | - | chr1_2:46717038-46717057 | Msa0073260:CDS | 40.0% |
| GTTTAACATGCTAGGTTTGC+TGG | + | chr1_2:46717107-46717126 | None:intergenic | 40.0% | |
| TGGAAATTGACCTGAAGAAC+TGG | + | chr1_2:46717147-46717166 | None:intergenic | 40.0% | |
| GTTTGGAAAATCCTGGAAGT+TGG | - | chr1_2:46717341-46717360 | Msa0073260:intron | 40.0% | |
| ATAAGTACCAACCAACTTCC+AGG | + | chr1_2:46717355-46717374 | None:intergenic | 40.0% | |
| CAGCTATTAAAGGGTAATGC+TGG | - | chr1_2:46717378-46717397 | Msa0073260:intron | 40.0% | |
| ATGCTGGTAAAACACATGCT+AGG | - | chr1_2:46717394-46717413 | Msa0073260:intron | 40.0% | |
| TGCTGGTAAAACACATGCTA+GGG | - | chr1_2:46717395-46717414 | Msa0073260:intron | 40.0% | |
| TGTTGCAGTACCGTTACTAT+GGG | - | chr1_2:46717602-46717621 | Msa0073260:intron | 40.0% | |
| ATCCAATTGTCCGTTCTATC+TGG | - | chr1_2:46717843-46717862 | Msa0073260:exon | 40.0% | |
| ! | AGGAGGAATGAGTTGCTTTG+GGG | + | chr1_2:46714234-46714253 | None:intergenic | 45.0% |
| ! | GAGGAGGAATGAGTTGCTTT+GGG | + | chr1_2:46714235-46714254 | None:intergenic | 45.0% |
| ! | GAAGGAATCGTTGTTGTTGG+AGG | + | chr1_2:46714254-46714273 | None:intergenic | 45.0% |
| CTCGAAGGAATCGTTGTTGT+TGG | + | chr1_2:46714257-46714276 | None:intergenic | 45.0% | |
| ! | ATTCCTTCGAGTTCTTCCCT+TGG | - | chr1_2:46714266-46714285 | Msa0073260:CDS | 45.0% |
| !! | ACTGACGGACTGATCCAAAT+CGG | - | chr1_2:46714901-46714920 | Msa0073260:intron | 45.0% |
| CCTAGACAAAGGCCTTGATT+GGG | + | chr1_2:46715639-46715658 | None:intergenic | 45.0% | |
| ACCTAGACAAAGGCCTTGAT+TGG | + | chr1_2:46715640-46715659 | None:intergenic | 45.0% | |
| ! | CAAAGAGTGCACCTAGACAA+AGG | + | chr1_2:46715650-46715669 | None:intergenic | 45.0% |
| CATATCAAGTCCCTGGAAAG+AGG | + | chr1_2:46715759-46715778 | None:intergenic | 45.0% | |
| CTCTTTCCAGGGACTTGATA+TGG | - | chr1_2:46715757-46715776 | Msa0073260:intron | 45.0% | |
| CACTAAGCATCTCAATCGAG+CGG | + | chr1_2:46715811-46715830 | None:intergenic | 45.0% | |
| TGTGGTGCAAGATACTGTCT+TGG | - | chr1_2:46715832-46715851 | Msa0073260:intron | 45.0% | |
| CAAGATACTGTCTTGGAGCA+TGG | - | chr1_2:46715839-46715858 | Msa0073260:intron | 45.0% | |
| ATACTGTCTTGGAGCATGGT+GGG | - | chr1_2:46715843-46715862 | Msa0073260:intron | 45.0% | |
| CTCCCGTTAACCCAAAATAC+AGG | + | chr1_2:46716048-46716067 | None:intergenic | 45.0% | |
| TTCTCGAGTCTTCTGCAAAC+TGG | + | chr1_2:46716246-46716265 | None:intergenic | 45.0% | |
| TGAAAGGAAGTAGGAACCCA+AGG | + | chr1_2:46716287-46716306 | None:intergenic | 45.0% | |
| TCCTCTTCTGCTGAATCATC+GGG | - | chr1_2:46716492-46716511 | Msa0073260:intron | 45.0% | |
| GAGTGAGCTATCTGTGAAGT+TGG | - | chr1_2:46716604-46716623 | Msa0073260:intron | 45.0% | |
| GAGAGACTAAAGGATGAGAG+TGG | - | chr1_2:46716664-46716683 | Msa0073260:intron | 45.0% | |
| GAGAGTGGTTGAGAAGAAGA+TGG | - | chr1_2:46716679-46716698 | Msa0073260:intron | 45.0% | |
| GAGTGGTTGAGAAGAAGATG+GGG | - | chr1_2:46716681-46716700 | Msa0073260:intron | 45.0% | |
| ! | GAAGATGGGGAATGATTTGG+TGG | - | chr1_2:46716694-46716713 | Msa0073260:intron | 45.0% |
| ATCAGTTCGCAAAGAAGCTG+TGG | + | chr1_2:46717067-46717086 | None:intergenic | 45.0% | |
| ! | GGAAAATCCTGGAAGTTGGT+TGG | - | chr1_2:46717345-46717364 | Msa0073260:intron | 45.0% |
| GCTGGTAAAACACATGCTAG+GGG | - | chr1_2:46717396-46717415 | Msa0073260:intron | 45.0% | |
| TAACGGTACTGCAACAGTCA+TGG | + | chr1_2:46717598-46717617 | None:intergenic | 45.0% | |
| CTGTTGCAGTACCGTTACTA+TGG | - | chr1_2:46717601-46717620 | Msa0073260:intron | 45.0% | |
| GTTGCAGTACCGTTACTATG+GGG | - | chr1_2:46717603-46717622 | Msa0073260:intron | 45.0% | |
| CTTCGCCTAGCTGTTAAAAG+TGG | - | chr1_2:46717648-46717667 | Msa0073260:CDS | 45.0% | |
| !! | CTCCTCCACTTTTAACAGCT+AGG | + | chr1_2:46717656-46717675 | None:intergenic | 45.0% |
| CTAGCTGTTAAAAGTGGAGG+AGG | - | chr1_2:46717654-46717673 | Msa0073260:CDS | 45.0% | |
| TGGAGGAGGAATTGTAGAGA+AGG | - | chr1_2:46717668-46717687 | Msa0073260:CDS | 45.0% | |
| TGCCAGATAGAACGGACAAT+TGG | + | chr1_2:46717848-46717867 | None:intergenic | 45.0% | |
| GAGAGGTAGAAGGAGCAACA+GGG | + | chr1_2:46714189-46714208 | None:intergenic | 50.0% | |
| TGAGAGGTAGAAGGAGCAAC+AGG | + | chr1_2:46714190-46714209 | None:intergenic | 50.0% | |
| AGACGAGGATGAGAGGTAGA+AGG | + | chr1_2:46714199-46714218 | None:intergenic | 50.0% | |
| ACGAAGAAGACGAGGATGAG+AGG | + | chr1_2:46714206-46714225 | None:intergenic | 50.0% | |
| ! | GGAGGAATGAGTTGCTTTGG+GGG | + | chr1_2:46714233-46714252 | None:intergenic | 50.0% |
| GGAGGAGGAATGAGTTGCTT+TGG | + | chr1_2:46714236-46714255 | None:intergenic | 50.0% | |
| ! | GGAATCGTTGTTGTTGGAGG+AGG | + | chr1_2:46714251-46714270 | None:intergenic | 50.0% |
| CGTTATCATCGTCGGACCAA+GGG | + | chr1_2:46714285-46714304 | None:intergenic | 50.0% | |
| CCTTGGTCCGACGATGATAA+CGG | - | chr1_2:46714283-46714302 | Msa0073260:CDS | 50.0% | |
| GAGCGAACCGTTATCATCGT+CGG | + | chr1_2:46714293-46714312 | None:intergenic | 50.0% | |
| GATTTGGATCAGTCCGTCAG+TGG | + | chr1_2:46714902-46714921 | None:intergenic | 50.0% | |
| GATCCAAATCGGAGGCAACA+TGG | - | chr1_2:46714912-46714931 | Msa0073260:intron | 50.0% | |
| GAACCATGTTGCCTCCGATT+TGG | + | chr1_2:46714918-46714937 | None:intergenic | 50.0% | |
| CCCAATCAAGGCCTTTGTCT+AGG | - | chr1_2:46715636-46715655 | Msa0073260:intron | 50.0% | |
| ! | GGCAGACGACTCTGCATTTT+TGG | - | chr1_2:46715779-46715798 | Msa0073260:intron | 50.0% |
| GATACTGTCTTGGAGCATGG+TGG | - | chr1_2:46715842-46715861 | Msa0073260:intron | 50.0% | |
| TACTGTCTTGGAGCATGGTG+GGG | - | chr1_2:46715844-46715863 | Msa0073260:intron | 50.0% | |
| CTAGTGTGCAGAAGTGACGT+AGG | - | chr1_2:46715922-46715941 | Msa0073260:intron | 50.0% | |
| ! | TTTGGGTTAACGGGAGCAAG+AGG | - | chr1_2:46716052-46716071 | Msa0073260:intron | 50.0% |
| TTGGGTTAACGGGAGCAAGA+GGG | - | chr1_2:46716053-46716072 | Msa0073260:intron | 50.0% | |
| ACCCGATGATTCAGCAGAAG+AGG | + | chr1_2:46716496-46716515 | None:intergenic | 50.0% | |
| CTAGTGTGCACAAGTGACAC+AGG | + | chr1_2:46716790-46716809 | None:intergenic | 50.0% | |
| AAGAAGCTGTGGCTTCCTTG+TGG | + | chr1_2:46717056-46717075 | None:intergenic | 50.0% | |
| ACAGGTGATTGCTGCAGAGA+AGG | - | chr1_2:46717542-46717561 | Msa0073260:intron | 50.0% | |
| CGCCTAGCTGTTAAAAGTGG+AGG | - | chr1_2:46717651-46717670 | Msa0073260:CDS | 50.0% | |
| GGGGAGAAACGAAGAAGACG+AGG | + | chr1_2:46714214-46714233 | None:intergenic | 55.0% | |
| GGACCAAGGGAAGAACTCGA+AGG | + | chr1_2:46714272-46714291 | None:intergenic | 55.0% | |
| CCGTTATCATCGTCGGACCA+AGG | + | chr1_2:46714286-46714305 | None:intergenic | 55.0% | |
| CAGTCCGTCAGTGGTGAAGA+AGG | + | chr1_2:46714893-46714912 | None:intergenic | 55.0% | |
| !! | GACGGACTGATCCAAATCGG+AGG | - | chr1_2:46714904-46714923 | Msa0073260:intron | 55.0% |
| TCAGAAGACTTGACGCGACG+AGG | + | chr1_2:46714940-46714959 | None:intergenic | 55.0% | |
| TGGAAGAGGGCGAAACCACT+CGG | - | chr1_2:46715236-46715255 | Msa0073260:intron | 55.0% | |
| GTCTGCCCATATCAAGTCCC+TGG | + | chr1_2:46715766-46715785 | None:intergenic | 55.0% | |
| GTTCAGTGGAGCCTACCCTT+CGG | - | chr1_2:46716574-46716593 | Msa0073260:intron | 55.0% | |
| ACTCAACGACTCCGAAGGGT+AGG | + | chr1_2:46716588-46716607 | None:intergenic | 55.0% | |
| GCTCACTCAACGACTCCGAA+GGG | + | chr1_2:46716592-46716611 | None:intergenic | 55.0% | |
| AGCTCACTCAACGACTCCGA+AGG | + | chr1_2:46716593-46716612 | None:intergenic | 55.0% | |
| GTGGCTTCCTTGTGGATGTG+TGG | + | chr1_2:46717048-46717067 | None:intergenic | 55.0% | |
| GGAGGAACGCCCCATAGTAA+CGG | + | chr1_2:46717615-46717634 | None:intergenic | 55.0% | |
| ! | CGAAGTGTCTCAGAAGCTGG+AGG | + | chr1_2:46717633-46717652 | None:intergenic | 55.0% |
| ! | AGGCGAAGTGTCTCAGAAGC+TGG | + | chr1_2:46717636-46717655 | None:intergenic | 55.0% |
| ! | TGTCTTGGAGCATGGTGGGG+AGG | - | chr1_2:46715847-46715866 | Msa0073260:intron | 60.0% |
| ! | TTGGAGCATGGTGGGGAGGT+AGG | - | chr1_2:46715851-46715870 | Msa0073260:intron | 60.0% |
| GCTGCAGAGAAGGCAAGCAG+AGG | - | chr1_2:46717552-46717571 | Msa0073260:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 46713978 | 46717951 | 46713978 | ID=Msa0073260;Name=Msa0073260 |
| chr1_2 | mRNA | 46713978 | 46717951 | 46713978 | ID=Msa0073260-mRNA-1;Parent=Msa0073260;Name=Msa0073260-mRNA-1;_AED=0.05;_eAED=0.05;_QI=104|1|1|1|1|1|5|235|236 |
| chr1_2 | exon | 46713978 | 46714383 | 46713978 | ID=Msa0073260-mRNA-1:exon:14233;Parent=Msa0073260-mRNA-1 |
| chr1_2 | exon | 46716061 | 46716162 | 46716061 | ID=Msa0073260-mRNA-1:exon:14232;Parent=Msa0073260-mRNA-1 |
| chr1_2 | exon | 46716243 | 46716356 | 46716243 | ID=Msa0073260-mRNA-1:exon:14231;Parent=Msa0073260-mRNA-1 |
| chr1_2 | exon | 46716969 | 46717069 | 46716969 | ID=Msa0073260-mRNA-1:exon:14230;Parent=Msa0073260-mRNA-1 |
| chr1_2 | exon | 46717625 | 46717951 | 46717625 | ID=Msa0073260-mRNA-1:exon:14229;Parent=Msa0073260-mRNA-1 |
| chr1_2 | five_prime_UTR | 46717848 | 46717951 | 46717848 | ID=Msa0073260-mRNA-1:five_prime_utr;Parent=Msa0073260-mRNA-1 |
| chr1_2 | CDS | 46717625 | 46717847 | 46717625 | ID=Msa0073260-mRNA-1:cds;Parent=Msa0073260-mRNA-1 |
| chr1_2 | CDS | 46716969 | 46717069 | 46716969 | ID=Msa0073260-mRNA-1:cds;Parent=Msa0073260-mRNA-1 |
| chr1_2 | CDS | 46716243 | 46716356 | 46716243 | ID=Msa0073260-mRNA-1:cds;Parent=Msa0073260-mRNA-1 |
| chr1_2 | CDS | 46716061 | 46716162 | 46716061 | ID=Msa0073260-mRNA-1:cds;Parent=Msa0073260-mRNA-1 |
| chr1_2 | CDS | 46714213 | 46714383 | 46714213 | ID=Msa0073260-mRNA-1:cds;Parent=Msa0073260-mRNA-1 |
| chr1_2 | three_prime_UTR | 46713978 | 46714212 | 46713978 | ID=Msa0073260-mRNA-1:three_prime_utr;Parent=Msa0073260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
