AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0339340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339340 MtrunA17_Chr2g0327771 96.457 508 17 1 1 508 1 507 0.0 1007
Msa0339340 MtrunA17_Chr2g0279401 65.877 422 142 2 88 508 102 522 0.0 578
Msa0339340 MtrunA17_Chr4g0050151 66.832 404 133 1 102 505 110 512 0.0 574
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339340 AT5G59750.1 69.396 513 139 6 1 507 2 502 0.0 711
Msa0339340 AT5G59750.2 65.082 547 139 7 1 507 2 536 0.0 694
Msa0339340 AT5G59750.3 66.812 458 134 6 1 452 2 447 0.0 602
Msa0339340 AT5G64300.1 67.067 416 136 1 90 505 112 526 0.0 589
Msa0339340 AT2G22450.1 58.418 392 154 3 92 483 92 474 8.72e-160 462

Find 121 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAATTTGTTGGTCTAAA+AGG 0.157959 2_4:+60483661 Msa0339340:CDS
TGTTTAACTGGGGATATATT+TGG 0.172347 2_4:+60482802 Msa0339340:CDS
TGTCACATCTTCCTACTAAA+TGG 0.198867 2_4:+60482540 Msa0339340:CDS
TTCCTTGGCGTAATGCATTA+AGG 0.202150 2_4:-60481359 None:intergenic
TATTGTTAGGATGCAAAATA+TGG 0.229542 2_4:+60481958 Msa0339340:intron
ACCAAAATGGGTCATATCTA+TGG 0.241057 2_4:+60483766 Msa0339340:CDS
ACCTTGATCTTGCAAATTAT+AGG 0.252533 2_4:-60482956 None:intergenic
GAACAACAAGGTGAGAAATT+TGG 0.257120 2_4:+60481128 Msa0339340:CDS
CCCATAGATATGACCCATTT+TGG 0.264968 2_4:-60483767 None:intergenic
TACTGAGGCTTCTGTAGATT+TGG 0.288351 2_4:+60482128 Msa0339340:CDS
GTCCAAGCAAACATAGATTT+GGG 0.316048 2_4:+60482988 Msa0339340:CDS
AGTCCAAGCAAACATAGATT+TGG 0.316830 2_4:+60482987 Msa0339340:CDS
GTACATTCAGAATGTTTAAC+TGG 0.320458 2_4:+60482790 Msa0339340:CDS
TTTGTTGGTCTAAAAGGATA+TGG 0.325230 2_4:+60483667 Msa0339340:CDS
ATCTATGGGTCTGATATATA+AGG 0.326183 2_4:+60483781 Msa0339340:CDS
CGCTTGTTTGCTTCAGTGAT+TGG 0.328210 2_4:-60483724 None:intergenic
CCACCATTTCTATACTTAAG+AGG 0.347032 2_4:-60482084 None:intergenic
ATAAAATATGTACCTTGAAT+TGG 0.360216 2_4:-60480976 None:intergenic
TCCTTGGCGTAATGCATTAA+GGG 0.365334 2_4:-60481358 None:intergenic
TGATGTTGAAGATGGAAATA+TGG 0.367048 2_4:+60482197 Msa0339340:CDS
TCGGAGAAAACGAGAGAAAT+TGG 0.372980 2_4:+60482502 Msa0339340:CDS
TACTCCTTAGAGGGACAATC+TGG 0.387555 2_4:-60481318 None:intergenic
TTCTGTAGATTTGGTTGCAT+TGG 0.388739 2_4:+60482137 Msa0339340:CDS
GTAGATTTGGTTGCATTGGC+AGG 0.388977 2_4:+60482141 Msa0339340:CDS
GTCACATCTTCCTACTAAAT+GGG 0.389348 2_4:+60482541 Msa0339340:CDS
ACTCATCATAGTGTAAGATT+TGG 0.392279 2_4:+60481099 Msa0339340:CDS
TCATAGCCAAATCTAGTTGC+TGG 0.393601 2_4:-60482846 None:intergenic
AGAGCTGTGAGAACAGAAAA+TGG 0.400675 2_4:-60482171 None:intergenic
AACAATCCAGCAAAATTTGT+TGG 0.402087 2_4:+60483652 Msa0339340:CDS
TTTCCTCTTAAGTATAGAAA+TGG 0.404838 2_4:+60482081 Msa0339340:CDS
TTATTTGGTGTCCCTGCCTA+TGG 0.410956 2_4:+60480911 Msa0339340:exon
AATTCTAGCTAACCTTTCCT+TGG 0.419158 2_4:-60481374 None:intergenic
AAATCAGTTATTGAGACAAT+TGG 0.419486 2_4:-60482264 None:intergenic
TCTCAATAACTGATTTGATA+AGG 0.421147 2_4:+60482271 Msa0339340:CDS
ATGTGTTCTTCGATGAATCT+TGG 0.421814 2_4:-60483829 None:intergenic
AAGTCCTCGGATTTCGACTC+TGG 0.423258 2_4:-60482039 None:intergenic
TGATCCAGATTGTCCCTCTA+AGG 0.424415 2_4:+60481314 Msa0339340:CDS
CTGTGGCCAGCAACTAGATT+TGG 0.426292 2_4:+60482840 Msa0339340:CDS
TGAAATAGACCCCATTTAGT+AGG 0.431751 2_4:-60482551 None:intergenic
GAAGGAAGAGGCATTGGGTT+AGG 0.438985 2_4:+60482919 Msa0339340:CDS
AATGGAAGAGTACTCCTTAG+AGG 0.439818 2_4:-60481328 None:intergenic
GAATCCTCTTCTTCAGTCTC+AGG 0.446487 2_4:-60481818 None:intergenic
TTCTCACCTTGTTGTTCCAC+AGG 0.446496 2_4:-60481122 None:intergenic
ACCCCAAATCTATGTTTGCT+TGG 0.446947 2_4:-60482990 None:intergenic
TGTTGAAGGGAATCTTATAA+AGG 0.455110 2_4:+60481679 Msa0339340:CDS
TTTATGATTAAACATGGATC+AGG 0.455192 2_4:+60481734 Msa0339340:CDS
AGCGTTACCTAGAAACAAAA+AGG 0.456329 2_4:+60483743 Msa0339340:CDS
GCTGTTGATGCTCGTGAGTA+TGG 0.457469 2_4:+60483015 Msa0339340:CDS
ATGAAATTGATTGAAGAAGC+TGG 0.460792 2_4:+60482865 Msa0339340:CDS
TGCATTAAGGGCATGCTCAA+TGG 0.463896 2_4:-60481346 None:intergenic
GATGAAAACAACAATGTTGA+AGG 0.466495 2_4:+60481665 Msa0339340:CDS
GGTCATGAAGGAAGAGGCAT+TGG 0.482864 2_4:+60482913 Msa0339340:CDS
TTGGTTGCTTAGGGAAACAT+AGG 0.482975 2_4:+60482742 Msa0339340:intron
CCACTGTGATAGTGAAAGTA+GGG 0.484212 2_4:-60481847 None:intergenic
AATCATAAATGCCACATCCT+TGG 0.486532 2_4:-60481720 None:intergenic
GCCTATAATTTGCAAGATCA+AGG 0.487252 2_4:+60482955 Msa0339340:CDS
GGAGTAATTGTGTATCTTAG+AGG 0.493061 2_4:+60482892 Msa0339340:CDS
ATAGAAATGGTGGAGTGCTT+AGG 0.494926 2_4:+60482094 Msa0339340:CDS
CCCACGTCATCACCAATTCA+AGG 0.497388 2_4:+60480964 Msa0339340:CDS
TGAGTATGGCATTGGTGCCC+AGG 0.497742 2_4:+60483029 Msa0339340:CDS
ACGTGGGAAATCAAAGGACT+AGG 0.503550 2_4:-60480948 None:intergenic
GCTCTTGTTGATGTTGAAGA+TGG 0.508607 2_4:+60482189 Msa0339340:CDS
TTGATTGAAGAAGCTGGAAG+AGG 0.514495 2_4:+60482871 Msa0339340:CDS
TGGAACTTCCACGGGTGTAT+CGG 0.515831 2_4:+60481978 Msa0339340:CDS
CCTCTTAAGTATAGAAATGG+TGG 0.517951 2_4:+60482084 Msa0339340:CDS
GGTGGAGTGCTTAGGAGAGC+TGG 0.520674 2_4:+60482102 Msa0339340:CDS
TGTTATAGTTCAAAGTTGGA+TGG 0.520999 2_4:+60482581 Msa0339340:CDS
GCTTAGGGAAACATAGGAGA+TGG 0.523904 2_4:+60482748 Msa0339340:intron
ATATTGTTATAGTTCAAAGT+TGG 0.524855 2_4:+60482577 Msa0339340:CDS
TCAGTCTCAGGTGACATAAG+AGG 0.529829 2_4:-60481806 None:intergenic
GGGAATGAAGCAGAGTCCAT+AGG 0.530818 2_4:-60480927 None:intergenic
TATTTATTCAAAGCTTGCAT+CGG 0.531008 2_4:+60481067 Msa0339340:intron
GGATATGGTTTAGCTGTGAC+AGG 0.532359 2_4:+60483682 Msa0339340:CDS
GCAAAATATGGAACTTCCAC+GGG 0.535098 2_4:+60481970 Msa0339340:CDS
ACATTGGAGTTCGAACTATG+AGG 0.535750 2_4:+60483620 Msa0339340:CDS
CCAAAATGGGTCATATCTAT+GGG 0.544969 2_4:+60483767 Msa0339340:CDS
GGATCAGGAATAGTTTCTGT+TGG 0.545719 2_4:+60481749 Msa0339340:CDS
ATGAAGCAGAGTCCATAGGC+AGG 0.546682 2_4:-60480923 None:intergenic
TCAGTGATTGGTGTTAGCAC+AGG 0.547814 2_4:-60483712 None:intergenic
GTCACCTGAGACTGAAGAAG+AGG 0.559881 2_4:+60481814 Msa0339340:CDS
TGAGCATGTGGCTGTTGTAA+AGG 0.560783 2_4:+60482607 Msa0339340:CDS
CTTAGAGGTCATGAAGGAAG+AGG 0.564446 2_4:+60482907 Msa0339340:CDS
CGTGGGAAATCAAAGGACTA+GGG 0.566760 2_4:-60480947 None:intergenic
TCTTGTTAGTACCAAGGATG+TGG 0.568018 2_4:+60481709 Msa0339340:CDS
TGCAAAATATGGAACTTCCA+CGG 0.569828 2_4:+60481969 Msa0339340:CDS
TAATGCATTACGCCAAGGAA+AGG 0.571418 2_4:+60481362 Msa0339340:CDS
TTCTGTTGGCATGAAAGAAG+AGG 0.576477 2_4:+60481763 Msa0339340:CDS
TTCCACGGGTGTATCGGCTG+AGG 0.587212 2_4:+60481984 Msa0339340:CDS
ATGGAAGAGTACTCCTTAGA+GGG 0.590392 2_4:-60481327 None:intergenic
ACCACTGTGATAGTGAAAGT+AGG 0.590650 2_4:-60481848 None:intergenic
GTCATGAAGGAAGAGGCATT+GGG 0.591268 2_4:+60482914 Msa0339340:CDS
TTCTTTGTAAGTGAAGCTGA+AGG 0.595370 2_4:+60481291 Msa0339340:CDS
ATGAAAACAACAATGTTGAA+GGG 0.595372 2_4:+60481666 Msa0339340:CDS
TACATTCAGAATGTTTAACT+GGG 0.597083 2_4:+60482791 Msa0339340:CDS
CTTAGGGAAACATAGGAGAT+GGG 0.597548 2_4:+60482749 Msa0339340:intron
GCCCTTAATGCATTACGCCA+AGG 0.607779 2_4:+60481357 Msa0339340:CDS
GATGCTCGTGAGTATGGCAT+TGG 0.608440 2_4:+60483021 Msa0339340:CDS
GTGTATCTTAGAGGTCATGA+AGG 0.608731 2_4:+60482901 Msa0339340:CDS
GGGATATATTTGGATCAGCT+CGG 0.611108 2_4:+60482812 Msa0339340:CDS
GTGGCATTTATGATTAAACA+TGG 0.613664 2_4:+60481728 Msa0339340:CDS
TCCGAGGACTTAAGAAAACC+AGG 0.619694 2_4:+60482051 Msa0339340:CDS
ATCCTCAGCCGATACACCCG+TGG 0.626653 2_4:-60481986 None:intergenic
ATTTGGCCTGTGGAACAACA+AGG 0.634139 2_4:+60481116 Msa0339340:CDS
ATAGTGTAAGATTTGGCCTG+TGG 0.635119 2_4:+60481106 Msa0339340:CDS
TCACATCTTCCTACTAAATG+GGG 0.639715 2_4:+60482542 Msa0339340:CDS
AGCATCTCTTGTTAGTACCA+AGG 0.640073 2_4:+60481703 Msa0339340:CDS
GAAGACGTGTTTGATGATAG+TGG 0.645204 2_4:+60481186 Msa0339340:CDS
TGAAGCAGAGTCCATAGGCA+GGG 0.649337 2_4:-60480922 None:intergenic
GTGATGACGTGGGAAATCAA+AGG 0.652787 2_4:-60480954 None:intergenic
ACCTTGAATTGGTGATGACG+TGG 0.653143 2_4:-60480965 None:intergenic
GGATCAGCTCGGTGTGACTG+TGG 0.657027 2_4:+60482823 Msa0339340:CDS
TCCAAGCAAACATAGATTTG+GGG 0.659816 2_4:+60482989 Msa0339340:CDS
TCTCAGGTGACATAAGAGGA+AGG 0.670240 2_4:-60481802 None:intergenic
ATCTCCAGAGTCGAAATCCG+AGG 0.671355 2_4:+60482035 Msa0339340:CDS
CACTGTGATAGTGAAAGTAG+GGG 0.673445 2_4:-60481846 None:intergenic
TAGGAGAGCTGGTCATACTG+AGG 0.694929 2_4:+60482113 Msa0339340:CDS
ACATTCAGAATGTTTAACTG+GGG 0.696460 2_4:+60482792 Msa0339340:CDS
GTTGGATGGAACTGAGCATG+TGG 0.707210 2_4:+60482595 Msa0339340:CDS
CCTTGAATTGGTGATGACGT+GGG 0.735027 2_4:-60480964 None:intergenic
GCTGTGAGAACAGAAAATGG+TGG 0.741200 2_4:-60482168 None:intergenic
CCCTACTTTCACTATCACAG+TGG 0.748231 2_4:+60481847 Msa0339340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTAAGAATTTTTATT+TGG + chr2_4:60480896-60480915 Msa0339340:five_prime_UTR 10.0%
!! TTCAAAAAAAATATTGATAT+AGG - chr2_4:60481626-60481645 None:intergenic 10.0%
!!! GTTTTTGTTTTTTTAAAATT+CGG - chr2_4:60483171-60483190 None:intergenic 10.0%
!!! ACTTTTAAAATAATATTCAA+AGG + chr2_4:60483889-60483908 Msa0339340:three_prime_UTR 10.0%
!! TTGTGTAATATATTATTGTT+AGG + chr2_4:60481945-60481964 Msa0339340:intron 15.0%
!! TCTGAATTATAATTTCTTAT+TGG + chr2_4:60482723-60482742 Msa0339340:intron 15.0%
!! ATAAAATATGTACCTTGAAT+TGG - chr2_4:60480979-60480998 None:intergenic 20.0%
!! GATTTGAAGAAAAATGAAAA+TGG + chr2_4:60481210-60481229 Msa0339340:CDS 20.0%
!!! GATGACATTTTATTAAGTAA+TGG + chr2_4:60481577-60481596 Msa0339340:intron 20.0%
!!! AATGCTAAGTTTTTTAAACT+GGG - chr2_4:60482231-60482250 None:intergenic 20.0%
!! ATATTGTTATAGTTCAAAGT+TGG + chr2_4:60482577-60482596 Msa0339340:CDS 20.0%
!! ATCTACTAATCAACATTTAT+TGG - chr2_4:60483349-60483368 None:intergenic 20.0%
!!! TGTAAAACATTTTTGAATGT+TGG + chr2_4:60483452-60483471 Msa0339340:intron 20.0%
!! GAAATATTGCAAATTATACA+AGG - chr2_4:60483526-60483545 None:intergenic 20.0%
!!! GGTACATATTTTATTTCTCT+AGG + chr2_4:60480985-60481004 Msa0339340:intron 25.0%
! TAGAGGAACAATTAATATAG+TGG - chr2_4:60481018-60481037 None:intergenic 25.0%
! TATTTATTCAAAGCTTGCAT+CGG + chr2_4:60481067-60481086 Msa0339340:intron 25.0%
!!! AATTTGGCTTTTTATGCTAT+TGG + chr2_4:60481144-60481163 Msa0339340:CDS 25.0%
!!! ATTTGGCTTTTTATGCTATT+GGG + chr2_4:60481145-60481164 Msa0339340:CDS 25.0%
! ATGAAAACAACAATGTTGAA+GGG + chr2_4:60481666-60481685 Msa0339340:CDS 25.0%
! TTTATGATTAAACATGGATC+AGG + chr2_4:60481734-60481753 Msa0339340:CDS 25.0%
! TATATGCAACAATCTACATT+AGG - chr2_4:60481902-60481921 None:intergenic 25.0%
! TATTGTTAGGATGCAAAATA+TGG + chr2_4:60481958-60481977 Msa0339340:intron 25.0%
! TTTCCTCTTAAGTATAGAAA+TGG + chr2_4:60482081-60482100 Msa0339340:CDS 25.0%
!!! CAATGCTAAGTTTTTTAAAC+TGG - chr2_4:60482232-60482251 None:intergenic 25.0%
! CAGTTTAAAAAACTTAGCAT+TGG + chr2_4:60482230-60482249 Msa0339340:CDS 25.0%
! AAATCAGTTATTGAGACAAT+TGG - chr2_4:60482267-60482286 None:intergenic 25.0%
!!! TCTCAATAACTGATTTGATA+AGG + chr2_4:60482271-60482290 Msa0339340:CDS 25.0%
! AAACATATGTTCTCTTAATG+TGG + chr2_4:60482418-60482437 Msa0339340:intron 25.0%
! TATTGTTAAGCGAATTTGAT+TGG - chr2_4:60482457-60482476 None:intergenic 25.0%
!!! TACTATTCTTTAGTTTGCTT+AGG - chr2_4:60482699-60482718 None:intergenic 25.0%
!! TAATTTCTTATTGGTTGCTT+AGG + chr2_4:60482732-60482751 Msa0339340:intron 25.0%
!! AATTTCTTATTGGTTGCTTA+GGG + chr2_4:60482733-60482752 Msa0339340:intron 25.0%
! TACATTCAGAATGTTTAACT+GGG + chr2_4:60482791-60482810 Msa0339340:CDS 25.0%
! TAATGATCAACTAAAGTAGA+TGG + chr2_4:60483103-60483122 Msa0339340:intron 25.0%
! TACTAATCAACATTTATTGG+TGG - chr2_4:60483346-60483365 None:intergenic 25.0%
! GATTTGTATTCACTAATACT+AGG - chr2_4:60483499-60483518 None:intergenic 25.0%
!!! CAACTTATAATAGCTTGTTT+TGG - chr2_4:60483572-60483591 None:intergenic 25.0%
AACATGAGTTCAACAAATAG+AGG - chr2_4:60481035-60481054 None:intergenic 30.0%
ACTCATCATAGTGTAAGATT+TGG + chr2_4:60481099-60481118 Msa0339340:CDS 30.0%
! TTATGCTATTGGGTTTTCTA+AGG + chr2_4:60481155-60481174 Msa0339340:CDS 30.0%
GATGAAAACAACAATGTTGA+AGG + chr2_4:60481665-60481684 Msa0339340:CDS 30.0%
TGTTGAAGGGAATCTTATAA+AGG + chr2_4:60481679-60481698 Msa0339340:CDS 30.0%
GTGGCATTTATGATTAAACA+TGG + chr2_4:60481728-60481747 Msa0339340:CDS 30.0%
TGATGTTGAAGATGGAAATA+TGG + chr2_4:60482197-60482216 Msa0339340:CDS 30.0%
TGTTATAGTTCAAAGTTGGA+TGG + chr2_4:60482581-60482600 Msa0339340:CDS 30.0%
GTACATTCAGAATGTTTAAC+TGG + chr2_4:60482790-60482809 Msa0339340:CDS 30.0%
ACATTCAGAATGTTTAACTG+GGG + chr2_4:60482792-60482811 Msa0339340:CDS 30.0%
TGTTTAACTGGGGATATATT+TGG + chr2_4:60482802-60482821 Msa0339340:CDS 30.0%
ATGAAATTGATTGAAGAAGC+TGG + chr2_4:60482865-60482884 Msa0339340:CDS 30.0%
ACCTTGATCTTGCAAATTAT+AGG - chr2_4:60482959-60482978 None:intergenic 30.0%
GTGATTAAAAGATCTAACCT+GGG - chr2_4:60483049-60483068 None:intergenic 30.0%
AGTGATTAAAAGATCTAACC+TGG - chr2_4:60483050-60483069 None:intergenic 30.0%
ACTAAAGTAGATGGTATGAT+TGG + chr2_4:60483112-60483131 Msa0339340:intron 30.0%
! GTGCATAAGTATTGTTCAAT+TGG - chr2_4:60483422-60483441 None:intergenic 30.0%
TGAACAATACTTATGCACTT+CGG + chr2_4:60483424-60483443 Msa0339340:intron 30.0%
! TGATAAATGTGCAGATTTTG+AGG + chr2_4:60483596-60483615 Msa0339340:intron 30.0%
! GATAAATGTGCAGATTTTGA+GGG + chr2_4:60483597-60483616 Msa0339340:intron 30.0%
AACAATCCAGCAAAATTTGT+TGG + chr2_4:60483652-60483671 Msa0339340:CDS 30.0%
! TTTAGACCAACAAATTTTGC+TGG - chr2_4:60483661-60483680 None:intergenic 30.0%
!! GCAAAATTTGTTGGTCTAAA+AGG + chr2_4:60483661-60483680 Msa0339340:CDS 30.0%
! TTTGTTGGTCTAAAAGGATA+TGG + chr2_4:60483667-60483686 Msa0339340:CDS 30.0%
!! TTTTGGTCCTTTTTGTTTCT+AGG - chr2_4:60483753-60483772 None:intergenic 30.0%
AGAAACAAAAAGGACCAAAA+TGG + chr2_4:60483753-60483772 Msa0339340:CDS 30.0%
GAAACAAAAAGGACCAAAAT+GGG + chr2_4:60483754-60483773 Msa0339340:CDS 30.0%
ATCTATGGGTCTGATATATA+AGG + chr2_4:60483781-60483800 Msa0339340:CDS 30.0%
GAACAACAAGGTGAGAAATT+TGG + chr2_4:60481128-60481147 Msa0339340:CDS 35.0%
!! AGCGTCTAACGTTTTTAAGA+GGG - chr2_4:60481238-60481257 None:intergenic 35.0%
!! TAGCGTCTAACGTTTTTAAG+AGG - chr2_4:60481239-60481258 None:intergenic 35.0%
TTCTTTGTAAGTGAAGCTGA+AGG + chr2_4:60481291-60481310 Msa0339340:CDS 35.0%
! AATTCTAGCTAACCTTTCCT+TGG - chr2_4:60481377-60481396 None:intergenic 35.0%
CGTTACGTCTAATACATGTT+TGG + chr2_4:60481408-60481427 Msa0339340:intron 35.0%
AATCATAAATGCCACATCCT+TGG - chr2_4:60481723-60481742 None:intergenic 35.0%
TGCAAAATATGGAACTTCCA+CGG + chr2_4:60481969-60481988 Msa0339340:CDS 35.0%
TTAAGAGGAAAAACATGACC+TGG - chr2_4:60482072-60482091 None:intergenic 35.0%
CCACCATTTCTATACTTAAG+AGG - chr2_4:60482087-60482106 None:intergenic 35.0%
CCTCTTAAGTATAGAAATGG+TGG + chr2_4:60482084-60482103 Msa0339340:CDS 35.0%
! TTCTGTAGATTTGGTTGCAT+TGG + chr2_4:60482137-60482156 Msa0339340:CDS 35.0%
TTAATGTATGTGACGCTTCA+AGG + chr2_4:60482477-60482496 Msa0339340:intron 35.0%
TGTCACATCTTCCTACTAAA+TGG + chr2_4:60482540-60482559 Msa0339340:CDS 35.0%
GTCACATCTTCCTACTAAAT+GGG + chr2_4:60482541-60482560 Msa0339340:CDS 35.0%
TCACATCTTCCTACTAAATG+GGG + chr2_4:60482542-60482561 Msa0339340:CDS 35.0%
TGAAATAGACCCCATTTAGT+AGG - chr2_4:60482554-60482573 None:intergenic 35.0%
GGAGTAATTGTGTATCTTAG+AGG + chr2_4:60482892-60482911 Msa0339340:CDS 35.0%
! GCCTATAATTTGCAAGATCA+AGG + chr2_4:60482955-60482974 Msa0339340:CDS 35.0%
AGTCCAAGCAAACATAGATT+TGG + chr2_4:60482987-60483006 Msa0339340:CDS 35.0%
GTCCAAGCAAACATAGATTT+GGG + chr2_4:60482988-60483007 Msa0339340:CDS 35.0%
TCCAAGCAAACATAGATTTG+GGG + chr2_4:60482989-60483008 Msa0339340:CDS 35.0%
AGATGGTATGATTGGACTTT+CGG + chr2_4:60483120-60483139 Msa0339340:intron 35.0%
AGCGTTACCTAGAAACAAAA+AGG + chr2_4:60483743-60483762 Msa0339340:CDS 35.0%
ACCAAAATGGGTCATATCTA+TGG + chr2_4:60483766-60483785 Msa0339340:CDS 35.0%
CCAAAATGGGTCATATCTAT+GGG + chr2_4:60483767-60483786 Msa0339340:CDS 35.0%
ATGTGTTCTTCGATGAATCT+TGG - chr2_4:60483832-60483851 None:intergenic 35.0%
ATAGTGTAAGATTTGGCCTG+TGG + chr2_4:60481106-60481125 Msa0339340:CDS 40.0%
!!! GCTATTGGGTTTTCTAAGGT+TGG + chr2_4:60481159-60481178 Msa0339340:CDS 40.0%
! GAAGACGTGTTTGATGATAG+TGG + chr2_4:60481186-60481205 Msa0339340:CDS 40.0%
!! ATGGAAGAGTACTCCTTAGA+GGG - chr2_4:60481330-60481349 None:intergenic 40.0%
!! AATGGAAGAGTACTCCTTAG+AGG - chr2_4:60481331-60481350 None:intergenic 40.0%
TCCTTGGCGTAATGCATTAA+GGG - chr2_4:60481361-60481380 None:intergenic 40.0%
TTCCTTGGCGTAATGCATTA+AGG - chr2_4:60481362-60481381 None:intergenic 40.0%
TAATGCATTACGCCAAGGAA+AGG + chr2_4:60481362-60481381 Msa0339340:CDS 40.0%
AGCATCTCTTGTTAGTACCA+AGG + chr2_4:60481703-60481722 Msa0339340:CDS 40.0%
TCTTGTTAGTACCAAGGATG+TGG + chr2_4:60481709-60481728 Msa0339340:CDS 40.0%
GGATCAGGAATAGTTTCTGT+TGG + chr2_4:60481749-60481768 Msa0339340:CDS 40.0%
TTCTGTTGGCATGAAAGAAG+AGG + chr2_4:60481763-60481782 Msa0339340:CDS 40.0%
! CACTGTGATAGTGAAAGTAG+GGG - chr2_4:60481849-60481868 None:intergenic 40.0%
! CCACTGTGATAGTGAAAGTA+GGG - chr2_4:60481850-60481869 None:intergenic 40.0%
! ACCACTGTGATAGTGAAAGT+AGG - chr2_4:60481851-60481870 None:intergenic 40.0%
GCAAAATATGGAACTTCCAC+GGG + chr2_4:60481970-60481989 Msa0339340:CDS 40.0%
!! ACCTGGTTTTCTTAAGTCCT+CGG - chr2_4:60482055-60482074 None:intergenic 40.0%
! ATAGAAATGGTGGAGTGCTT+AGG + chr2_4:60482094-60482113 Msa0339340:CDS 40.0%
TACTGAGGCTTCTGTAGATT+TGG + chr2_4:60482128-60482147 Msa0339340:CDS 40.0%
AGAGCTGTGAGAACAGAAAA+TGG - chr2_4:60482174-60482193 None:intergenic 40.0%
GCTCTTGTTGATGTTGAAGA+TGG + chr2_4:60482189-60482208 Msa0339340:CDS 40.0%
TATGTGACGCTTCAAGGTAT+CGG + chr2_4:60482483-60482502 Msa0339340:intron 40.0%
TCGGAGAAAACGAGAGAAAT+TGG + chr2_4:60482502-60482521 Msa0339340:CDS 40.0%
TTGGTTGCTTAGGGAAACAT+AGG + chr2_4:60482742-60482761 Msa0339340:intron 40.0%
CTTAGGGAAACATAGGAGAT+GGG + chr2_4:60482749-60482768 Msa0339340:intron 40.0%
GGGATATATTTGGATCAGCT+CGG + chr2_4:60482812-60482831 Msa0339340:CDS 40.0%
TCATAGCCAAATCTAGTTGC+TGG - chr2_4:60482849-60482868 None:intergenic 40.0%
TTGATTGAAGAAGCTGGAAG+AGG + chr2_4:60482871-60482890 Msa0339340:CDS 40.0%
GTGTATCTTAGAGGTCATGA+AGG + chr2_4:60482901-60482920 Msa0339340:CDS 40.0%
ACCCCAAATCTATGTTTGCT+TGG - chr2_4:60482993-60483012 None:intergenic 40.0%
!! ACATTTATTGGTGGCGAGTT+TGG - chr2_4:60483337-60483356 None:intergenic 40.0%
ACATTGGAGTTCGAACTATG+AGG + chr2_4:60483620-60483639 Msa0339340:CDS 40.0%
! CCCATAGATATGACCCATTT+TGG - chr2_4:60483770-60483789 None:intergenic 40.0%
!! TTATTTGGTGTCCCTGCCTA+TGG + chr2_4:60480911-60480930 Msa0339340:exon 45.0%
CGTGGGAAATCAAAGGACTA+GGG - chr2_4:60480950-60480969 None:intergenic 45.0%
ACGTGGGAAATCAAAGGACT+AGG - chr2_4:60480951-60480970 None:intergenic 45.0%
! GTGATGACGTGGGAAATCAA+AGG - chr2_4:60480957-60480976 None:intergenic 45.0%
!! CCTTGAATTGGTGATGACGT+GGG - chr2_4:60480967-60480986 None:intergenic 45.0%
!! ACCTTGAATTGGTGATGACG+TGG - chr2_4:60480968-60480987 None:intergenic 45.0%
ATTTGGCCTGTGGAACAACA+AGG + chr2_4:60481116-60481135 Msa0339340:CDS 45.0%
!! TTCTCACCTTGTTGTTCCAC+AGG - chr2_4:60481125-60481144 None:intergenic 45.0%
TGATCCAGATTGTCCCTCTA+AGG + chr2_4:60481314-60481333 Msa0339340:CDS 45.0%
TACTCCTTAGAGGGACAATC+TGG - chr2_4:60481321-60481340 None:intergenic 45.0%
! TGCATTAAGGGCATGCTCAA+TGG - chr2_4:60481349-60481368 None:intergenic 45.0%
TCTCAGGTGACATAAGAGGA+AGG - chr2_4:60481805-60481824 None:intergenic 45.0%
TCAGTCTCAGGTGACATAAG+AGG - chr2_4:60481809-60481828 None:intergenic 45.0%
GAATCCTCTTCTTCAGTCTC+AGG - chr2_4:60481821-60481840 None:intergenic 45.0%
CCCTACTTTCACTATCACAG+TGG + chr2_4:60481847-60481866 Msa0339340:CDS 45.0%
TCCGAGGACTTAAGAAAACC+AGG + chr2_4:60482051-60482070 Msa0339340:CDS 45.0%
! GTAGATTTGGTTGCATTGGC+AGG + chr2_4:60482141-60482160 Msa0339340:CDS 45.0%
GCTGTGAGAACAGAAAATGG+TGG - chr2_4:60482171-60482190 None:intergenic 45.0%
TGAGCATGTGGCTGTTGTAA+AGG + chr2_4:60482607-60482626 Msa0339340:CDS 45.0%
GCTTAGGGAAACATAGGAGA+TGG + chr2_4:60482748-60482767 Msa0339340:intron 45.0%
CTTAGAGGTCATGAAGGAAG+AGG + chr2_4:60482907-60482926 Msa0339340:CDS 45.0%
!! GTCATGAAGGAAGAGGCATT+GGG + chr2_4:60482914-60482933 Msa0339340:CDS 45.0%
!! GTGCAGATTTTGAGGGACAT+TGG + chr2_4:60483604-60483623 Msa0339340:intron 45.0%
GGATATGGTTTAGCTGTGAC+AGG + chr2_4:60483682-60483701 Msa0339340:CDS 45.0%
!! TCAGTGATTGGTGTTAGCAC+AGG - chr2_4:60483715-60483734 None:intergenic 45.0%
CGCTTGTTTGCTTCAGTGAT+TGG - chr2_4:60483727-60483746 None:intergenic 45.0%
TGAAGCAGAGTCCATAGGCA+GGG - chr2_4:60480925-60480944 None:intergenic 50.0%
ATGAAGCAGAGTCCATAGGC+AGG - chr2_4:60480926-60480945 None:intergenic 50.0%
GGGAATGAAGCAGAGTCCAT+AGG - chr2_4:60480930-60480949 None:intergenic 50.0%
CCCACGTCATCACCAATTCA+AGG + chr2_4:60480964-60480983 Msa0339340:CDS 50.0%
GCCCTTAATGCATTACGCCA+AGG + chr2_4:60481357-60481376 Msa0339340:CDS 50.0%
GTCACCTGAGACTGAAGAAG+AGG + chr2_4:60481814-60481833 Msa0339340:CDS 50.0%
TGGAACTTCCACGGGTGTAT+CGG + chr2_4:60481978-60481997 Msa0339340:CDS 50.0%
ATCTCCAGAGTCGAAATCCG+AGG + chr2_4:60482035-60482054 Msa0339340:CDS 50.0%
AAGTCCTCGGATTTCGACTC+TGG - chr2_4:60482042-60482061 None:intergenic 50.0%
TAGGAGAGCTGGTCATACTG+AGG + chr2_4:60482113-60482132 Msa0339340:CDS 50.0%
GTTGGATGGAACTGAGCATG+TGG + chr2_4:60482595-60482614 Msa0339340:CDS 50.0%
CTGTGGCCAGCAACTAGATT+TGG + chr2_4:60482840-60482859 Msa0339340:CDS 50.0%
! GGTCATGAAGGAAGAGGCAT+TGG + chr2_4:60482913-60482932 Msa0339340:CDS 50.0%
!! GAAGGAAGAGGCATTGGGTT+AGG + chr2_4:60482919-60482938 Msa0339340:CDS 50.0%
GCTGTTGATGCTCGTGAGTA+TGG + chr2_4:60483015-60483034 Msa0339340:CDS 50.0%
GATGCTCGTGAGTATGGCAT+TGG + chr2_4:60483021-60483040 Msa0339340:CDS 50.0%
!! TGAGTATGGCATTGGTGCCC+AGG + chr2_4:60483029-60483048 Msa0339340:CDS 55.0%
!! TTCCACGGGTGTATCGGCTG+AGG + chr2_4:60481984-60482003 Msa0339340:CDS 60.0%
ATCCTCAGCCGATACACCCG+TGG - chr2_4:60481989-60482008 None:intergenic 60.0%
! GGTGGAGTGCTTAGGAGAGC+TGG + chr2_4:60482102-60482121 Msa0339340:CDS 60.0%
!! GGATCAGCTCGGTGTGACTG+TGG + chr2_4:60482823-60482842 Msa0339340:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 60480873 60483963 60480873 ID=Msa0339340;Name=Msa0339340
chr2_4 mRNA 60480873 60483963 60480873 ID=Msa0339340-mRNA-1;Parent=Msa0339340;Name=Msa0339340-mRNA-1;_AED=0.08;_eAED=0.08;_QI=57|1|1|1|1|1|7|162|508
chr2_4 exon 60480873 60480985 60480873 ID=Msa0339340-mRNA-1:exon:18773;Parent=Msa0339340-mRNA-1
chr2_4 exon 60481080 60481383 60481080 ID=Msa0339340-mRNA-1:exon:18774;Parent=Msa0339340-mRNA-1
chr2_4 exon 60481647 60481868 60481647 ID=Msa0339340-mRNA-1:exon:18775;Parent=Msa0339340-mRNA-1
chr2_4 exon 60481967 60482292 60481967 ID=Msa0339340-mRNA-1:exon:18776;Parent=Msa0339340-mRNA-1
chr2_4 exon 60482499 60482628 60482499 ID=Msa0339340-mRNA-1:exon:18777;Parent=Msa0339340-mRNA-1
chr2_4 exon 60482754 60483050 60482754 ID=Msa0339340-mRNA-1:exon:18778;Parent=Msa0339340-mRNA-1
chr2_4 exon 60483610 60483963 60483610 ID=Msa0339340-mRNA-1:exon:18779;Parent=Msa0339340-mRNA-1
chr2_4 five_prime_UTR 60480873 60480929 60480873 ID=Msa0339340-mRNA-1:five_prime_utr;Parent=Msa0339340-mRNA-1
chr2_4 CDS 60480930 60480985 60480930 ID=Msa0339340-mRNA-1:cds;Parent=Msa0339340-mRNA-1
chr2_4 CDS 60481080 60481383 60481080 ID=Msa0339340-mRNA-1:cds;Parent=Msa0339340-mRNA-1
chr2_4 CDS 60481647 60481868 60481647 ID=Msa0339340-mRNA-1:cds;Parent=Msa0339340-mRNA-1
chr2_4 CDS 60481967 60482292 60481967 ID=Msa0339340-mRNA-1:cds;Parent=Msa0339340-mRNA-1
chr2_4 CDS 60482499 60482628 60482499 ID=Msa0339340-mRNA-1:cds;Parent=Msa0339340-mRNA-1
chr2_4 CDS 60482754 60483050 60482754 ID=Msa0339340-mRNA-1:cds;Parent=Msa0339340-mRNA-1
chr2_4 CDS 60483610 60483801 60483610 ID=Msa0339340-mRNA-1:cds;Parent=Msa0339340-mRNA-1
chr2_4 three_prime_UTR 60483802 60483963 60483802 ID=Msa0339340-mRNA-1:three_prime_utr;Parent=Msa0339340-mRNA-1
Gene Sequence

>Msa0339340

ATGGACTCTGCTTCATTCCCTAGTCCTTTGATTTCCCACGTCATCACCAATTCAAGCTTGCATCGGTCTTGCACTACTCATCATAGTGTAAGATTTGGCCTGTGGAACAACAAGGTGAGAAATTTGGCTTTTTATGCTATTGGGTTTTCTAAGGTTGGAACTGAAGACGTGTTTGATGATAGTGGTGATTTGAAGAAAAATGAAAATGGATCCCTCTTAAAAACGTTAGACGCTACAAATGAAATAACTGATCAAGAAAATAGCGATTTCTTTGTAAGTGAAGCTGAAGGTGATCCAGATTGTCCCTCTAAGGAGTACTCTTCCATTGAGCATGCCCTTAATGCATTACGCCAAGGAAAGTTTGTAATCGTTGTAGATGATGAAAACAACAATGTTGAAGGGAATCTTATAAAGGCAGCATCTCTTGTTAGTACCAAGGATGTGGCATTTATGATTAAACATGGATCAGGAATAGTTTCTGTTGGCATGAAAGAAGAGGATCTTCAAAGATTAAACCTTCCTCTTATGTCACCTGAGACTGAAGAAGAGGATTCATCTGCCCCTACTTTCACTATCACAGTGGATGCAAAATATGGAACTTCCACGGGTGTATCGGCTGAGGATAGAGCAAAAACAATTCTTGCTTTATCATCTCCAGAGTCGAAATCCGAGGACTTAAGAAAACCAGGTCATGTTTTTCCTCTTAAGTATAGAAATGGTGGAGTGCTTAGGAGAGCTGGTCATACTGAGGCTTCTGTAGATTTGGTTGCATTGGCAGGCTTGCCACCATTTTCTGTTCTCACAGCTCTTGTTGATGTTGAAGATGGAAATATGGCATCTTTGCCCAGTTTAAAAAACTTAGCATTGGAATATAACTTACCAATTGTCTCAATAACTGATTTGATAAGGTATCGGAGAAAACGAGAGAAATTGGTTGAAAGAACTTATGTGTCACATCTTCCTACTAAATGGGGTCTATTTCAAGCATATTGTTATAGTTCAAAGTTGGATGGAACTGAGCATGTGGCTGTTGTAAAGGGAAACATAGGAGATGGGCAAGATGTTCTAGTAAGAGTACATTCAGAATGTTTAACTGGGGATATATTTGGATCAGCTCGGTGTGACTGTGGCCAGCAACTAGATTTGGCTATGAAATTGATTGAAGAAGCTGGAAGAGGAGTAATTGTGTATCTTAGAGGTCATGAAGGAAGAGGCATTGGGTTAGGTCACAAACTTCAAGCCTATAATTTGCAAGATCAAGGTCGTGATACAGTCCAAGCAAACATAGATTTGGGGTTAGCTGTTGATGCTCGTGAGTATGGCATTGGTGCCCAGATTTTGAGGGACATTGGAGTTCGAACTATGAGGTTGATGACAAACAATCCAGCAAAATTTGTTGGTCTAAAAGGATATGGTTTAGCTGTGACAGGTCGTGTTCCTGTGCTAACACCAATCACTGAAGCAAACAAGCGTTACCTAGAAACAAAAAGGACCAAAATGGGTCATATCTATGGGTCTGATATATAA

Protein sequence

>Msa0339340

MDSASFPSPLISHVITNSSLHRSCTTHHSVRFGLWNNKVRNLAFYAIGFSKVGTEDVFDDSGDLKKNENGSLLKTLDATNEITDQENSDFFVSEAEGDPDCPSKEYSSIEHALNALRQGKFVIVVDDENNNVEGNLIKAASLVSTKDVAFMIKHGSGIVSVGMKEEDLQRLNLPLMSPETEEEDSSAPTFTITVDAKYGTSTGVSAEDRAKTILALSSPESKSEDLRKPGHVFPLKYRNGGVLRRAGHTEASVDLVALAGLPPFSVLTALVDVEDGNMASLPSLKNLALEYNLPIVSITDLIRYRRKREKLVERTYVSHLPTKWGLFQAYCYSSKLDGTEHVAVVKGNIGDGQDVLVRVHSECLTGDIFGSARCDCGQQLDLAMKLIEEAGRGVIVYLRGHEGRGIGLGHKLQAYNLQDQGRDTVQANIDLGLAVDAREYGIGAQILRDIGVRTMRLMTNNPAKFVGLKGYGLAVTGRVPVLTPITEANKRYLETKRTKMGHIYGSDI*