AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0185540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185540 MtrunA17_Chr3g0146001 100.000 170 0 0 1 170 224 393 7.07e-122 348
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185540 AT4G35250.1 91.765 170 14 0 1 170 226 395 1.74e-113 328

Find 40 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTAATGTAATTATATCTT+TGG 0.230175 1_4:-75861671 None:intergenic
AGTATCCATGTAAGCGATTC+TGG 0.290196 1_4:-75860757 None:intergenic
GGTAAACTTCTTACATTTGC+TGG 0.304653 1_4:+75860925 Msa0185540:CDS
TATAAATTAACCAATGTGTT+TGG 0.334141 1_4:-75861915 None:intergenic
CACTTCTCACTATGTACATT+TGG 0.339648 1_4:-75861979 None:intergenic
TTATTCTTAAATACGCTTGC+CGG 0.343333 1_4:+75861830 Msa0185540:three_prime_UTR
TACATTAGAGAAGTATTTGC+AGG 0.361917 1_4:+75861684 Msa0185540:CDS
TTCTTACGTGGGCTTACAAT+TGG 0.375224 1_4:+75861871 Msa0185540:three_prime_UTR
ACATTGTGTGAGAGGCTTGC+GGG 0.395591 1_4:+75860979 Msa0185540:CDS
CACACAATGTAATCACCTCT+TGG 0.411787 1_4:-75860966 None:intergenic
AAATATCTGATTGTTTCGAC+TGG 0.443973 1_4:-75861750 None:intergenic
CGAGAATAGGAACAGCATAC+TGG 0.446584 1_4:-75860701 None:intergenic
CTGTAGTTACATTAGCATCT+TGG 0.467915 1_4:-75861002 None:intergenic
TGCATACGAGGTAATGTTGT+GGG 0.476275 1_4:+75861796 Msa0185540:three_prime_UTR
TATTTATGAATTGTGTCAGT+TGG 0.477239 1_4:+75862129 Msa0185540:three_prime_UTR
CATGTAAGCGATTCTGGTGG+GGG 0.487749 1_4:-75860751 None:intergenic
CTGACGAGTGAGTCTTAAAA+CGG 0.500828 1_4:-75861034 None:intergenic
GAACATATTGAAGAAGTTGA+AGG 0.506295 1_4:+75861717 Msa0185540:CDS
CCCCACCAGAATCGCTTACA+TGG 0.515621 1_4:+75860752 Msa0185540:CDS
CCATGTAAGCGATTCTGGTG+GGG 0.516968 1_4:-75860752 None:intergenic
AAATGATGTTGCTGACAGAT+TGG 0.529217 1_4:+75861080 Msa0185540:CDS
ACACAATGTAATCACCTCTT+GGG 0.536741 1_4:-75860965 None:intergenic
AGGTTGTATGTCTCCGCCAT+TGG 0.538477 1_4:-75861634 None:intergenic
TCCATGTAAGCGATTCTGGT+GGG 0.555397 1_4:-75860753 None:intergenic
GACACAATTCATAAATACTT+AGG 0.556487 1_4:-75862123 None:intergenic
GTGAGTCTTAAAACGGAGAC+AGG 0.566202 1_4:-75861027 None:intergenic
GCGGAGACATACAACCTACT+TGG 0.567860 1_4:+75861640 Msa0185540:CDS
AATATCTGATTGTTTCGACT+GGG 0.571429 1_4:-75861749 None:intergenic
TACATTGTGTGAGAGGCTTG+CGG 0.572162 1_4:+75860978 Msa0185540:CDS
AATCGCTTACATGGATACTC+AGG 0.576431 1_4:+75860761 Msa0185540:CDS
CATTTGCTGGTCCTCGTGCG+TGG 0.576997 1_4:+75860938 Msa0185540:CDS
AGGTGATTACATTGTGTGAG+AGG 0.579608 1_4:+75860971 Msa0185540:CDS
CTTTGGTATCGACACCAAGT+AGG 0.582966 1_4:-75861654 None:intergenic
TGGCCAATAAGACCCTGCAT+TGG 0.591501 1_4:-75860681 None:intergenic
TTGCATACGAGGTAATGTTG+TGG 0.612997 1_4:+75861795 Msa0185540:three_prime_UTR
TTGTATTCATCCAAACACAT+TGG 0.619267 1_4:+75861905 Msa0185540:three_prime_UTR
ATCCATGTAAGCGATTCTGG+TGG 0.627734 1_4:-75860754 None:intergenic
ATGATTTGTAATTGCATACG+AGG 0.645440 1_4:+75861784 Msa0185540:three_prime_UTR
TCGTGCGTGGACTACCCAAG+AGG 0.692160 1_4:+75860951 Msa0185540:CDS
TCTTGGGTAGTCCACGCACG+AGG 0.707865 1_4:-75860949 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTCTTTCATTTTAA+TGG + chr1_4:75861537-75861556 Msa0185540:intron 15.0%
!! AATAAAAAAACAATATACAC+CGG - chr1_4:75861852-75861871 None:intergenic 15.0%
!!! TATTTTCTCTTTCATTTTAA+TGG + chr1_4:75861537-75861556 Msa0185540:intron 15.0%
!! AATAAAAAAACAATATACAC+CGG - chr1_4:75861852-75861871 None:intergenic 15.0%
!!! ATTGATTTTTTCATTTCGTA+AGG - chr1_4:75860905-75860924 None:intergenic 20.0%
!! TTACGAAATGAAAAAATCAA+TGG + chr1_4:75860904-75860923 Msa0185540:CDS 20.0%
!! CAACAAGTATTAATGAATTT+AGG - chr1_4:75861140-75861159 None:intergenic 20.0%
!!! TCAACTATTTTTTGTTACAT+TGG + chr1_4:75861216-75861235 Msa0185540:intron 20.0%
!! AGCAATCTAAAAATAAGTAA+GGG - chr1_4:75861242-75861261 None:intergenic 20.0%
!! AAGCAATCTAAAAATAAGTA+AGG - chr1_4:75861243-75861262 None:intergenic 20.0%
!!! TTATTTTTAGATTGCTTGAA+TGG + chr1_4:75861246-75861265 Msa0185540:intron 20.0%
!! CTCTAATGTAATTATATCTT+TGG - chr1_4:75861674-75861693 None:intergenic 20.0%
!!! TTGTTTTTTTATTTCTTACG+TGG + chr1_4:75861859-75861878 Msa0185540:three_prime_UTR 20.0%
!!! TGTTTTTTTATTTCTTACGT+GGG + chr1_4:75861860-75861879 Msa0185540:three_prime_UTR 20.0%
!! TATAAATTAACCAATGTGTT+TGG - chr1_4:75861918-75861937 None:intergenic 20.0%
!!! ATTGATTTTTTCATTTCGTA+AGG - chr1_4:75860905-75860924 None:intergenic 20.0%
!! TTACGAAATGAAAAAATCAA+TGG + chr1_4:75860904-75860923 Msa0185540:CDS 20.0%
!! CAACAAGTATTAATGAATTT+AGG - chr1_4:75861140-75861159 None:intergenic 20.0%
!!! TCAACTATTTTTTGTTACAT+TGG + chr1_4:75861216-75861235 Msa0185540:intron 20.0%
!! AGCAATCTAAAAATAAGTAA+GGG - chr1_4:75861242-75861261 None:intergenic 20.0%
!! AAGCAATCTAAAAATAAGTA+AGG - chr1_4:75861243-75861262 None:intergenic 20.0%
!!! TTATTTTTAGATTGCTTGAA+TGG + chr1_4:75861246-75861265 Msa0185540:intron 20.0%
!! CTCTAATGTAATTATATCTT+TGG - chr1_4:75861674-75861693 None:intergenic 20.0%
!!! TTGTTTTTTTATTTCTTACG+TGG + chr1_4:75861859-75861878 Msa0185540:three_prime_UTR 20.0%
!!! TGTTTTTTTATTTCTTACGT+GGG + chr1_4:75861860-75861879 Msa0185540:three_prime_UTR 20.0%
!! TATAAATTAACCAATGTGTT+TGG - chr1_4:75861918-75861937 None:intergenic 20.0%
! ATGAATGAAGTGATTGATTA+AGG - chr1_4:75860834-75860853 None:intergenic 25.0%
!! TTCATTAATACTTGTTGCAT+TGG + chr1_4:75861143-75861162 Msa0185540:intron 25.0%
! AAAAAAGAAGAAGAAGGATT+GGG - chr1_4:75861177-75861196 None:intergenic 25.0%
! AAAAAAAGAAGAAGAAGGAT+TGG - chr1_4:75861178-75861197 None:intergenic 25.0%
! CATACAAAAAAAGAAGAAGA+AGG - chr1_4:75861183-75861202 None:intergenic 25.0%
!!! TATCAAATAATAGTGTTGGT+CGG - chr1_4:75861462-75861481 None:intergenic 25.0%
! GATGTATCAAATAATAGTGT+TGG - chr1_4:75861466-75861485 None:intergenic 25.0%
! GAGAAAATATTATATGCACT+AGG - chr1_4:75861526-75861545 None:intergenic 25.0%
!!! TTTCTCTTTCATTTTAATGG+TGG + chr1_4:75861540-75861559 Msa0185540:intron 25.0%
! GACACAATTCATAAATACTT+AGG - chr1_4:75862126-75862145 None:intergenic 25.0%
! TATTTATGAATTGTGTCAGT+TGG + chr1_4:75862129-75862148 Msa0185540:three_prime_UTR 25.0%
! ATGAATGAAGTGATTGATTA+AGG - chr1_4:75860834-75860853 None:intergenic 25.0%
!! TTCATTAATACTTGTTGCAT+TGG + chr1_4:75861143-75861162 Msa0185540:intron 25.0%
! AAAAAAGAAGAAGAAGGATT+GGG - chr1_4:75861177-75861196 None:intergenic 25.0%
! AAAAAAAGAAGAAGAAGGAT+TGG - chr1_4:75861178-75861197 None:intergenic 25.0%
! CATACAAAAAAAGAAGAAGA+AGG - chr1_4:75861183-75861202 None:intergenic 25.0%
!!! TATCAAATAATAGTGTTGGT+CGG - chr1_4:75861462-75861481 None:intergenic 25.0%
! GATGTATCAAATAATAGTGT+TGG - chr1_4:75861466-75861485 None:intergenic 25.0%
! GAGAAAATATTATATGCACT+AGG - chr1_4:75861526-75861545 None:intergenic 25.0%
!!! TTTCTCTTTCATTTTAATGG+TGG + chr1_4:75861540-75861559 Msa0185540:intron 25.0%
! GACACAATTCATAAATACTT+AGG - chr1_4:75862126-75862145 None:intergenic 25.0%
! TATTTATGAATTGTGTCAGT+TGG + chr1_4:75862129-75862148 Msa0185540:three_prime_UTR 25.0%
! ACAGATTTTTCTTCGAGAAT+AGG - chr1_4:75860717-75860736 None:intergenic 30.0%
TTCTCGAAGAAAAATCTGTT+TGG + chr1_4:75860718-75860737 Msa0185540:CDS 30.0%
TCTCGAAGAAAAATCTGTTT+GGG + chr1_4:75860719-75860738 Msa0185540:CDS 30.0%
TGCATTACTACATTTCCATT+GGG + chr1_4:75861316-75861335 Msa0185540:intron 30.0%
GGAATAAACCTGTAAGAATA+GGG - chr1_4:75861428-75861447 None:intergenic 30.0%
TGGAATAAACCTGTAAGAAT+AGG - chr1_4:75861429-75861448 None:intergenic 30.0%
ACAGGTTTATTCCATTCTAT+TGG + chr1_4:75861435-75861454 Msa0185540:intron 30.0%
CATGCCTATAGTTGATTATA+CGG + chr1_4:75861568-75861587 Msa0185540:intron 30.0%
ATGCCTATAGTTGATTATAC+GGG + chr1_4:75861569-75861588 Msa0185540:intron 30.0%
TTTCCCGTATAATCAACTAT+AGG - chr1_4:75861575-75861594 None:intergenic 30.0%
ATTATACGGGAAATATTTGC+AGG + chr1_4:75861582-75861601 Msa0185540:intron 30.0%
!! TACATTAGAGAAGTATTTGC+AGG + chr1_4:75861684-75861703 Msa0185540:CDS 30.0%
GAACATATTGAAGAAGTTGA+AGG + chr1_4:75861717-75861736 Msa0185540:CDS 30.0%
AATATCTGATTGTTTCGACT+GGG - chr1_4:75861752-75861771 None:intergenic 30.0%
AAATATCTGATTGTTTCGAC+TGG - chr1_4:75861753-75861772 None:intergenic 30.0%
! ATGATTTGTAATTGCATACG+AGG + chr1_4:75861784-75861803 Msa0185540:three_prime_UTR 30.0%
TTATTCTTAAATACGCTTGC+CGG + chr1_4:75861830-75861849 Msa0185540:three_prime_UTR 30.0%
TTGTATTCATCCAAACACAT+TGG + chr1_4:75861905-75861924 Msa0185540:three_prime_UTR 30.0%
! ACAGATTTTTCTTCGAGAAT+AGG - chr1_4:75860717-75860736 None:intergenic 30.0%
TTCTCGAAGAAAAATCTGTT+TGG + chr1_4:75860718-75860737 Msa0185540:CDS 30.0%
TCTCGAAGAAAAATCTGTTT+GGG + chr1_4:75860719-75860738 Msa0185540:CDS 30.0%
TGCATTACTACATTTCCATT+GGG + chr1_4:75861316-75861335 Msa0185540:intron 30.0%
GGAATAAACCTGTAAGAATA+GGG - chr1_4:75861428-75861447 None:intergenic 30.0%
TGGAATAAACCTGTAAGAAT+AGG - chr1_4:75861429-75861448 None:intergenic 30.0%
ACAGGTTTATTCCATTCTAT+TGG + chr1_4:75861435-75861454 Msa0185540:intron 30.0%
CATGCCTATAGTTGATTATA+CGG + chr1_4:75861568-75861587 Msa0185540:intron 30.0%
ATGCCTATAGTTGATTATAC+GGG + chr1_4:75861569-75861588 Msa0185540:intron 30.0%
TTTCCCGTATAATCAACTAT+AGG - chr1_4:75861575-75861594 None:intergenic 30.0%
ATTATACGGGAAATATTTGC+AGG + chr1_4:75861582-75861601 Msa0185540:intron 30.0%
!! TACATTAGAGAAGTATTTGC+AGG + chr1_4:75861684-75861703 Msa0185540:CDS 30.0%
GAACATATTGAAGAAGTTGA+AGG + chr1_4:75861717-75861736 Msa0185540:CDS 30.0%
AATATCTGATTGTTTCGACT+GGG - chr1_4:75861752-75861771 None:intergenic 30.0%
AAATATCTGATTGTTTCGAC+TGG - chr1_4:75861753-75861772 None:intergenic 30.0%
! ATGATTTGTAATTGCATACG+AGG + chr1_4:75861784-75861803 Msa0185540:three_prime_UTR 30.0%
TTATTCTTAAATACGCTTGC+CGG + chr1_4:75861830-75861849 Msa0185540:three_prime_UTR 30.0%
TTGTATTCATCCAAACACAT+TGG + chr1_4:75861905-75861924 Msa0185540:three_prime_UTR 30.0%
CTCGAAGAAAAATCTGTTTG+GGG + chr1_4:75860720-75860739 Msa0185540:CDS 35.0%
GGTAAACTTCTTACATTTGC+TGG + chr1_4:75860925-75860944 Msa0185540:CDS 35.0%
ACACAATGTAATCACCTCTT+GGG - chr1_4:75860968-75860987 None:intergenic 35.0%
CTGTAGTTACATTAGCATCT+TGG - chr1_4:75861005-75861024 None:intergenic 35.0%
ATTTGTCCACTCAAAAAAGC+GGG - chr1_4:75861064-75861083 None:intergenic 35.0%
CATTTGTCCACTCAAAAAAG+CGG - chr1_4:75861065-75861084 None:intergenic 35.0%
AAATGATGTTGCTGACAGAT+TGG + chr1_4:75861080-75861099 Msa0185540:CDS 35.0%
CTGCATTACTACATTTCCAT+TGG + chr1_4:75861315-75861334 Msa0185540:intron 35.0%
GCATTACTACATTTCCATTG+GGG + chr1_4:75861317-75861336 Msa0185540:intron 35.0%
! CTGTAAGAATAGGGTTTGTT+TGG - chr1_4:75861419-75861438 None:intergenic 35.0%
CAAACAAACCCTATTCTTAC+AGG + chr1_4:75861417-75861436 Msa0185540:intron 35.0%
ATATGCACTAGGAATCTGTT+TGG - chr1_4:75861515-75861534 None:intergenic 35.0%
CACTTCTCACTATGTACATT+TGG - chr1_4:75861982-75862001 None:intergenic 35.0%
CTCGAAGAAAAATCTGTTTG+GGG + chr1_4:75860720-75860739 Msa0185540:CDS 35.0%
GGTAAACTTCTTACATTTGC+TGG + chr1_4:75860925-75860944 Msa0185540:CDS 35.0%
ACACAATGTAATCACCTCTT+GGG - chr1_4:75860968-75860987 None:intergenic 35.0%
CTGTAGTTACATTAGCATCT+TGG - chr1_4:75861005-75861024 None:intergenic 35.0%
ATTTGTCCACTCAAAAAAGC+GGG - chr1_4:75861064-75861083 None:intergenic 35.0%
CATTTGTCCACTCAAAAAAG+CGG - chr1_4:75861065-75861084 None:intergenic 35.0%
AAATGATGTTGCTGACAGAT+TGG + chr1_4:75861080-75861099 Msa0185540:CDS 35.0%
CTGCATTACTACATTTCCAT+TGG + chr1_4:75861315-75861334 Msa0185540:intron 35.0%
GCATTACTACATTTCCATTG+GGG + chr1_4:75861317-75861336 Msa0185540:intron 35.0%
! CTGTAAGAATAGGGTTTGTT+TGG - chr1_4:75861419-75861438 None:intergenic 35.0%
CAAACAAACCCTATTCTTAC+AGG + chr1_4:75861417-75861436 Msa0185540:intron 35.0%
ATATGCACTAGGAATCTGTT+TGG - chr1_4:75861515-75861534 None:intergenic 35.0%
CACTTCTCACTATGTACATT+TGG - chr1_4:75861982-75862001 None:intergenic 35.0%
AGTATCCATGTAAGCGATTC+TGG - chr1_4:75860760-75860779 None:intergenic 40.0%
AATCGCTTACATGGATACTC+AGG + chr1_4:75860761-75860780 Msa0185540:CDS 40.0%
CTATATCCTAAAAGCAGCAG+AGG - chr1_4:75860864-75860883 None:intergenic 40.0%
CACACAATGTAATCACCTCT+TGG - chr1_4:75860969-75860988 None:intergenic 40.0%
AGGTGATTACATTGTGTGAG+AGG + chr1_4:75860971-75860990 Msa0185540:CDS 40.0%
CTGACGAGTGAGTCTTAAAA+CGG - chr1_4:75861037-75861056 None:intergenic 40.0%
!!! AGTTAACCCGCTTTTTTGAG+TGG + chr1_4:75861055-75861074 Msa0185540:CDS 40.0%
! TGACAGATTGGCATTTTCAG+AGG + chr1_4:75861092-75861111 Msa0185540:CDS 40.0%
TGGATTTGGGTAAAAGCCAA+TGG - chr1_4:75861351-75861370 None:intergenic 40.0%
! CACAGTTTTCTCTGTTCCAA+TGG + chr1_4:75861618-75861637 Msa0185540:CDS 40.0%
! AGTTTTCTCTGTTCCAATGG+CGG + chr1_4:75861621-75861640 Msa0185540:CDS 40.0%
TTGCATACGAGGTAATGTTG+TGG + chr1_4:75861795-75861814 Msa0185540:three_prime_UTR 40.0%
TGCATACGAGGTAATGTTGT+GGG + chr1_4:75861796-75861815 Msa0185540:three_prime_UTR 40.0%
TTCTTACGTGGGCTTACAAT+TGG + chr1_4:75861871-75861890 Msa0185540:three_prime_UTR 40.0%
! GTCTTTTAAGCATGCGATAC+AGG - chr1_4:75862104-75862123 None:intergenic 40.0%
AGTATCCATGTAAGCGATTC+TGG - chr1_4:75860760-75860779 None:intergenic 40.0%
AATCGCTTACATGGATACTC+AGG + chr1_4:75860761-75860780 Msa0185540:CDS 40.0%
CTATATCCTAAAAGCAGCAG+AGG - chr1_4:75860864-75860883 None:intergenic 40.0%
CACACAATGTAATCACCTCT+TGG - chr1_4:75860969-75860988 None:intergenic 40.0%
AGGTGATTACATTGTGTGAG+AGG + chr1_4:75860971-75860990 Msa0185540:CDS 40.0%
CTGACGAGTGAGTCTTAAAA+CGG - chr1_4:75861037-75861056 None:intergenic 40.0%
!!! AGTTAACCCGCTTTTTTGAG+TGG + chr1_4:75861055-75861074 Msa0185540:CDS 40.0%
! TGACAGATTGGCATTTTCAG+AGG + chr1_4:75861092-75861111 Msa0185540:CDS 40.0%
TGGATTTGGGTAAAAGCCAA+TGG - chr1_4:75861351-75861370 None:intergenic 40.0%
! CACAGTTTTCTCTGTTCCAA+TGG + chr1_4:75861618-75861637 Msa0185540:CDS 40.0%
! AGTTTTCTCTGTTCCAATGG+CGG + chr1_4:75861621-75861640 Msa0185540:CDS 40.0%
TTGCATACGAGGTAATGTTG+TGG + chr1_4:75861795-75861814 Msa0185540:three_prime_UTR 40.0%
TGCATACGAGGTAATGTTGT+GGG + chr1_4:75861796-75861815 Msa0185540:three_prime_UTR 40.0%
TTCTTACGTGGGCTTACAAT+TGG + chr1_4:75861871-75861890 Msa0185540:three_prime_UTR 40.0%
! GTCTTTTAAGCATGCGATAC+AGG - chr1_4:75862104-75862123 None:intergenic 40.0%
CGAGAATAGGAACAGCATAC+TGG - chr1_4:75860704-75860723 None:intergenic 45.0%
TCCATGTAAGCGATTCTGGT+GGG - chr1_4:75860756-75860775 None:intergenic 45.0%
ATCCATGTAAGCGATTCTGG+TGG - chr1_4:75860757-75860776 None:intergenic 45.0%
TACATTGTGTGAGAGGCTTG+CGG + chr1_4:75860978-75860997 Msa0185540:CDS 45.0%
GTGAGTCTTAAAACGGAGAC+AGG - chr1_4:75861030-75861049 None:intergenic 45.0%
GGGTAAAAGCCAATGGCAAT+AGG - chr1_4:75861344-75861363 None:intergenic 45.0%
! CCATCGACATGAGTGGATTT+GGG - chr1_4:75861364-75861383 None:intergenic 45.0%
! TCCATCGACATGAGTGGATT+TGG - chr1_4:75861365-75861384 None:intergenic 45.0%
TTGATGTCCATCGACATGAG+TGG - chr1_4:75861371-75861390 None:intergenic 45.0%
TGTTGGTCGGACCAATAGAA+TGG - chr1_4:75861449-75861468 None:intergenic 45.0%
!! CTTTGGTATCGACACCAAGT+AGG - chr1_4:75861657-75861676 None:intergenic 45.0%
CGAGAATAGGAACAGCATAC+TGG - chr1_4:75860704-75860723 None:intergenic 45.0%
TCCATGTAAGCGATTCTGGT+GGG - chr1_4:75860756-75860775 None:intergenic 45.0%
ATCCATGTAAGCGATTCTGG+TGG - chr1_4:75860757-75860776 None:intergenic 45.0%
TACATTGTGTGAGAGGCTTG+CGG + chr1_4:75860978-75860997 Msa0185540:CDS 45.0%
GTGAGTCTTAAAACGGAGAC+AGG - chr1_4:75861030-75861049 None:intergenic 45.0%
GGGTAAAAGCCAATGGCAAT+AGG - chr1_4:75861344-75861363 None:intergenic 45.0%
! CCATCGACATGAGTGGATTT+GGG - chr1_4:75861364-75861383 None:intergenic 45.0%
! TCCATCGACATGAGTGGATT+TGG - chr1_4:75861365-75861384 None:intergenic 45.0%
TTGATGTCCATCGACATGAG+TGG - chr1_4:75861371-75861390 None:intergenic 45.0%
TGTTGGTCGGACCAATAGAA+TGG - chr1_4:75861449-75861468 None:intergenic 45.0%
!! CTTTGGTATCGACACCAAGT+AGG - chr1_4:75861657-75861676 None:intergenic 45.0%
CATGTAAGCGATTCTGGTGG+GGG - chr1_4:75860754-75860773 None:intergenic 50.0%
CCATGTAAGCGATTCTGGTG+GGG - chr1_4:75860755-75860774 None:intergenic 50.0%
!!! TGTCTGCCTCTGCTGCTTTT+AGG + chr1_4:75860855-75860874 Msa0185540:intron 50.0%
ACATTGTGTGAGAGGCTTGC+GGG + chr1_4:75860979-75860998 Msa0185540:CDS 50.0%
! GACTGGACGAGAGCTGATTT+GGG - chr1_4:75861282-75861301 None:intergenic 50.0%
AGACTGGACGAGAGCTGATT+TGG - chr1_4:75861283-75861302 None:intergenic 50.0%
GCAGAGACACAAACTGAGAC+TGG - chr1_4:75861299-75861318 None:intergenic 50.0%
CAATGGCAATAGGTCCCCAA+TGG - chr1_4:75861334-75861353 None:intergenic 50.0%
CATTGGGGACCTATTGCCAT+TGG + chr1_4:75861332-75861351 Msa0185540:intron 50.0%
CCCAAATCCACTCATGTCGA+TGG + chr1_4:75861361-75861380 Msa0185540:intron 50.0%
AGGTTGTATGTCTCCGCCAT+TGG - chr1_4:75861637-75861656 None:intergenic 50.0%
GCGGAGACATACAACCTACT+TGG + chr1_4:75861640-75861659 Msa0185540:CDS 50.0%
CATGTAAGCGATTCTGGTGG+GGG - chr1_4:75860754-75860773 None:intergenic 50.0%
CCATGTAAGCGATTCTGGTG+GGG - chr1_4:75860755-75860774 None:intergenic 50.0%
!!! TGTCTGCCTCTGCTGCTTTT+AGG + chr1_4:75860855-75860874 Msa0185540:intron 50.0%
ACATTGTGTGAGAGGCTTGC+GGG + chr1_4:75860979-75860998 Msa0185540:CDS 50.0%
! GACTGGACGAGAGCTGATTT+GGG - chr1_4:75861282-75861301 None:intergenic 50.0%
AGACTGGACGAGAGCTGATT+TGG - chr1_4:75861283-75861302 None:intergenic 50.0%
GCAGAGACACAAACTGAGAC+TGG - chr1_4:75861299-75861318 None:intergenic 50.0%
CAATGGCAATAGGTCCCCAA+TGG - chr1_4:75861334-75861353 None:intergenic 50.0%
CATTGGGGACCTATTGCCAT+TGG + chr1_4:75861332-75861351 Msa0185540:intron 50.0%
CCCAAATCCACTCATGTCGA+TGG + chr1_4:75861361-75861380 Msa0185540:intron 50.0%
AGGTTGTATGTCTCCGCCAT+TGG - chr1_4:75861637-75861656 None:intergenic 50.0%
GCGGAGACATACAACCTACT+TGG + chr1_4:75861640-75861659 Msa0185540:CDS 50.0%
CCCCACCAGAATCGCTTACA+TGG + chr1_4:75860752-75860771 Msa0185540:CDS 55.0%
CCCCACCAGAATCGCTTACA+TGG + chr1_4:75860752-75860771 Msa0185540:CDS 55.0%
! CATTTGCTGGTCCTCGTGCG+TGG + chr1_4:75860938-75860957 Msa0185540:CDS 60.0%
TCTTGGGTAGTCCACGCACG+AGG - chr1_4:75860952-75860971 None:intergenic 60.0%
! TCGTGCGTGGACTACCCAAG+AGG + chr1_4:75860951-75860970 Msa0185540:CDS 60.0%
! CATTTGCTGGTCCTCGTGCG+TGG + chr1_4:75860938-75860957 Msa0185540:CDS 60.0%
TCTTGGGTAGTCCACGCACG+AGG - chr1_4:75860952-75860971 None:intergenic 60.0%
! TCGTGCGTGGACTACCCAAG+AGG + chr1_4:75860951-75860970 Msa0185540:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 75860684 75862215 75860684 ID=Msa0185540;Name=Msa0185540
chr1_4 mRNA 75860684 75862215 75860684 ID=Msa0185540-mRNA-1;Parent=Msa0185540;Name=Msa0185540-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.33|1|1|1|3|435|170
chr1_4 exon 75860684 75860782 75860684 ID=Msa0185540-mRNA-1:exon:25834;Parent=Msa0185540-mRNA-1
chr1_4 exon 75860877 75861113 75860877 ID=Msa0185540-mRNA-1:exon:25835;Parent=Msa0185540-mRNA-1
chr1_4 exon 75861604 75862215 75861604 ID=Msa0185540-mRNA-1:exon:25836;Parent=Msa0185540-mRNA-1
chr1_4 CDS 75860684 75860782 75860684 ID=Msa0185540-mRNA-1:cds;Parent=Msa0185540-mRNA-1
chr1_4 CDS 75860877 75861113 75860877 ID=Msa0185540-mRNA-1:cds;Parent=Msa0185540-mRNA-1
chr1_4 CDS 75861604 75861780 75861604 ID=Msa0185540-mRNA-1:cds;Parent=Msa0185540-mRNA-1
chr1_4 three_prime_UTR 75861781 75862215 75861781 ID=Msa0185540-mRNA-1:three_prime_utr;Parent=Msa0185540-mRNA-1
Gene Sequence

>Msa0185540

ATGCAGGGTCTTATTGGCCAGTATGCTGTTCCTATTCTCGAAGAAAAATCTGTTTGGGGAACTGACGCCCCCACCAGAATCGCTTACATGGATACTCAGGATATAGCTCGCTTGACTTTTATAGCCTTACGAAATGAAAAAATCAATGGTAAACTTCTTACATTTGCTGGTCCTCGTGCGTGGACTACCCAAGAGGTGATTACATTGTGTGAGAGGCTTGCGGGCCAAGATGCTAATGTAACTACAGTTCCTGTCTCCGTTTTAAGACTCACTCGTCAGTTAACCCGCTTTTTTGAGTGGACAAATGATGTTGCTGACAGATTGGCATTTTCAGAGGTGCTTACAAGTGACACAGTTTTCTCTGTTCCAATGGCGGAGACATACAACCTACTTGGTGTCGATACCAAAGATATAATTACATTAGAGAAGTATTTGCAGGACTACTTCACGAACATATTGAAGAAGTTGAAGGATCTCAAAGCCCAGTCGAAACAATCAGATATTTTCTTCTGA

Protein sequence

>Msa0185540

MQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNEKINGKLLTFAGPRAWTTQEVITLCERLAGQDANVTTVPVSVLRLTRQLTRFFEWTNDVADRLAFSEVLTSDTVFSVPMAETYNLLGVDTKDIITLEKYLQDYFTNILKKLKDLKAQSKQSDIFF*