AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568460 MtrunA17_Chr8g0383271 94.706 170 8 1 3 171 1 170 4.78e-105 298
Msa0568460 MtrunA17_Chr1g0178671 36.134 119 73 2 57 175 8 123 1.19e-21 85.5
Msa0568460 MtrunA17_Chr7g0266291 34.711 121 73 4 58 175 39 156 1.11e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568460 AT1G10500.1 64.835 182 52 3 7 179 2 180 2.30e-76 226
Msa0568460 AT2G16710.1 37.719 114 63 3 67 175 14 124 1.32e-21 85.9
Msa0568460 AT2G16710.3 35.593 118 66 3 67 175 14 130 3.94e-21 84.7
Msa0568460 AT2G36260.1 33.962 106 66 3 70 175 5 106 1.20e-17 74.7
Msa0568460 AT5G03905.1 34.234 111 70 2 70 179 50 158 3.46e-17 75.1
Msa0568460 AT2G16710.2 35.366 82 50 2 70 151 22 100 7.61e-13 62.4

Find 56 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGTTGATACATCGATTA+TGG 0.182656 4_1:-70058750 Msa0568460:three_prime_UTR
CTCTGTTGATACATCGATTA+TGG 0.182656 4_1:-70058790 Msa0568460:three_prime_UTR
AAGAGCCTACTCTTCGTATT+TGG 0.197827 4_1:-70059168 Msa0568460:CDS
GATCGAATTGAGAGAGGTTT+AGG 0.272109 4_1:+70060684 None:intergenic
CAATACTTCGGAGTAATTAT+AGG 0.301592 4_1:-70058988 Msa0568460:three_prime_UTR
CCACAGGTTTGTGTCGCATT+AGG 0.312594 4_1:+70059090 None:intergenic
CAAGATTTGTGTTTAAGAAT+TGG 0.321991 4_1:-70060013 Msa0568460:CDS
GATTGGAACGCGAACGAATT+GGG 0.333118 4_1:+70060764 None:intergenic
CCACAGCAAACAAACAGATA+TGG 0.339633 4_1:+70058902 None:intergenic
AATACGAAGAGTAGGCTCTT+AGG 0.361492 4_1:+70059171 None:intergenic
GAACAATATAATATAAATAC+TGG 0.367518 4_1:-70058845 Msa0568460:three_prime_UTR
TGATTGGAACGCGAACGAAT+TGG 0.382823 4_1:+70060763 None:intergenic
GGTGCCACGGCCCCAGATGC+AGG 0.406436 4_1:+70060097 None:intergenic
ATCGAATTGAGAGAGGTTTA+GGG 0.409502 4_1:+70060685 None:intergenic
GAGAGAGAGCTATGAGTGAT+TGG 0.409580 4_1:+70060747 None:intergenic
TGCACCTGCATCTGGGGCCG+TGG 0.436538 4_1:-70060101 Msa0568460:CDS
AAAACCTTTGTATTCAATGA+TGG 0.441255 4_1:+70059913 None:intergenic
CTAAAGCGGCGATTGAGAAT+TGG 0.446890 4_1:+70060708 None:intergenic
GACTACAGTGATGCTCTGAT+TGG 0.458599 4_1:-70059135 Msa0568460:CDS
GTCAAACAAGGTGGGTGCTC+TGG 0.472114 4_1:-70059989 Msa0568460:CDS
CACAGCAAACAAACAGATAT+GGG 0.474400 4_1:+70058903 None:intergenic
CCATATCTGTTTGTTTGCTG+TGG 0.480157 4_1:-70058902 Msa0568460:three_prime_UTR
CGATGTATCAACAGAGAAAG+TGG 0.485454 4_1:+70058757 None:intergenic
CGATGTATCAACAGAGAAAG+TGG 0.485454 4_1:+70058797 None:intergenic
TTATCTGTAAGCGAAATTGC+AGG 0.509358 4_1:+70060076 None:intergenic
GGGCTTACCGGCAGCAATAA+CGG 0.512066 4_1:+70060656 None:intergenic
ATTGGAACGCGAACGAATTG+GGG 0.513543 4_1:+70060765 None:intergenic
AAATGATTTACCACATCCAC+AGG 0.517325 4_1:+70059074 None:intergenic
AAATCAAACATGGCCATGGC+TGG 0.519320 4_1:-70060828 Msa0568460:exon
AGACAATAGTTACAATACTA+AGG 0.522902 4_1:-70059024 Msa0568460:three_prime_UTR
TATTCAATGATGGAGTCGTC+TGG 0.526703 4_1:+70059923 None:intergenic
TACAGTGATGCTCTGATTGG+AGG 0.527694 4_1:-70059132 Msa0568460:CDS
ACAATAAACTGATGCACCAC+AGG 0.539750 4_1:+70058879 None:intergenic
TCACTTTCCGTTATTGCTGC+CGG 0.540114 4_1:-70060663 Msa0568460:intron
TGTTTGTTTGCTGTGGCCTG+TGG 0.558121 4_1:-70058895 Msa0568460:three_prime_UTR
TTTAGCTGCACCTGCATCTG+GGG 0.577576 4_1:-70060107 Msa0568460:intron
GCGACACAAACCTGTGGATG+TGG 0.581388 4_1:-70059084 Msa0568460:CDS
TTAAGAATTGGTGTCAAACA+AGG 0.584994 4_1:-70060001 Msa0568460:CDS
AAGCGAAATTGCAGGTGCCA+CGG 0.587731 4_1:+70060084 None:intergenic
AGAATTGGTGTCAAACAAGG+TGG 0.587930 4_1:-70059998 Msa0568460:CDS
AGTGATGCTCTGATTGGAGG+AGG 0.589985 4_1:-70059129 Msa0568460:CDS
TTGAGGACAGGGCTAATGCA+AGG 0.598318 4_1:-70059946 Msa0568460:CDS
CAATTACTACTACCGCGCAC+TGG 0.599076 4_1:-70060791 Msa0568460:CDS
AGAGAGGTTTAGGGCTAAAG+CGG 0.601518 4_1:+70060694 None:intergenic
GCATTCCAAATACGAAGAGT+AGG 0.603532 4_1:+70059163 None:intergenic
ACACAAATCAAACATGGCCA+TGG 0.605803 4_1:-70060832 Msa0568460:exon
AGAGAAAGCAGCACCAGCCA+TGG 0.608264 4_1:+70060815 None:intergenic
CTCTGGTATGTCATACACAA+TGG 0.609613 4_1:-70059972 Msa0568460:CDS
TTCTCTACACAAATCAAACA+TGG 0.615705 4_1:-70060838 Msa0568460:exon
GAATGTTTGAAGCAATACTT+CGG 0.618101 4_1:-70059000 Msa0568460:three_prime_UTR
GAAAGTGATCGAATTGAGAG+AGG 0.627615 4_1:+70060678 None:intergenic
TCAATCACTTGAATAAGATG+AGG 0.638619 4_1:-70060048 Msa0568460:CDS
GAATTGGTGTCAAACAAGGT+GGG 0.648767 4_1:-70059997 Msa0568460:CDS
GACTCCATCATTGAATACAA+AGG 0.682577 4_1:-70059917 Msa0568460:CDS
CCTAATGCGACACAAACCTG+TGG 0.690717 4_1:-70059090 Msa0568460:CDS
GAATTGGGGAGACCAGTGCG+CGG 0.788727 4_1:+70060779 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAAATAGAAGAATAT+GGG + chr4_1:70059017-70059036 None:intergenic 10.0%
!! AAAATAAAGAGAAAAAAAAA+TGG - chr4_1:70059411-70059430 Msa0568460:intron 10.0%
!! AAATAAAGAGAAAAAAAAAT+GGG - chr4_1:70059412-70059431 Msa0568460:intron 10.0%
!! ATTAATAAATAGAAGAATAT+GGG + chr4_1:70059017-70059036 None:intergenic 10.0%
!! AAAATAAAGAGAAAAAAAAA+TGG - chr4_1:70059411-70059430 Msa0568460:intron 10.0%
!! AAATAAAGAGAAAAAAAAAT+GGG - chr4_1:70059412-70059431 Msa0568460:intron 10.0%
!! TTAATAAATAGAAGAATATG+GGG + chr4_1:70059016-70059035 None:intergenic 15.0%
!! GATTAATAAATAGAAGAATA+TGG + chr4_1:70059018-70059037 None:intergenic 15.0%
!!! ATATTTTGCTTGTTTTTATT+TGG - chr4_1:70059965-70059984 Msa0568460:CDS 15.0%
!!! TATTTTGCTTGTTTTTATTT+GGG - chr4_1:70059966-70059985 Msa0568460:CDS 15.0%
!!! TTTTATTACAATCACATTAT+AGG - chr4_1:70060685-70060704 Msa0568460:CDS 15.0%
!! GAACAATATAATATAAATAC+TGG - chr4_1:70060804-70060823 Msa0568460:CDS 15.0%
!! TTAATAAATAGAAGAATATG+GGG + chr4_1:70059016-70059035 None:intergenic 15.0%
!! GATTAATAAATAGAAGAATA+TGG + chr4_1:70059018-70059037 None:intergenic 15.0%
!!! ATATTTTGCTTGTTTTTATT+TGG - chr4_1:70059965-70059984 Msa0568460:CDS 15.0%
!!! TATTTTGCTTGTTTTTATTT+GGG - chr4_1:70059966-70059985 Msa0568460:CDS 15.0%
!!! TTTTATTACAATCACATTAT+AGG - chr4_1:70060685-70060704 Msa0568460:CDS 15.0%
!! GAACAATATAATATAAATAC+TGG - chr4_1:70060804-70060823 Msa0568460:CDS 15.0%
!! CAAAATACTCCTATTAATTA+GGG + chr4_1:70059194-70059213 None:intergenic 20.0%
!! TCAAAATACTCCTATTAATT+AGG + chr4_1:70059195-70059214 None:intergenic 20.0%
!! AGGAAATAACAAAACATAAA+TGG + chr4_1:70059230-70059249 None:intergenic 20.0%
!!! TTTATTTTAAACTCATAGCA+TGG + chr4_1:70059399-70059418 None:intergenic 20.0%
!! ATCAAATAATTTAATCACCT+TGG + chr4_1:70059818-70059837 None:intergenic 20.0%
!! CAATATCTTCAAATGAATAT+GGG - chr4_1:70059854-70059873 Msa0568460:intron 20.0%
!!! AGTTTGATAACATTTATACT+TGG + chr4_1:70060006-70060025 None:intergenic 20.0%
!! CAAAATACTCCTATTAATTA+GGG + chr4_1:70059194-70059213 None:intergenic 20.0%
!! TCAAAATACTCCTATTAATT+AGG + chr4_1:70059195-70059214 None:intergenic 20.0%
!! AGGAAATAACAAAACATAAA+TGG + chr4_1:70059230-70059249 None:intergenic 20.0%
!!! TTTATTTTAAACTCATAGCA+TGG + chr4_1:70059399-70059418 None:intergenic 20.0%
!! ATCAAATAATTTAATCACCT+TGG + chr4_1:70059818-70059837 None:intergenic 20.0%
!! CAATATCTTCAAATGAATAT+GGG - chr4_1:70059854-70059873 Msa0568460:intron 20.0%
!!! AGTTTGATAACATTTATACT+TGG + chr4_1:70060006-70060025 None:intergenic 20.0%
! ATCATCATCATCATCAAATT+GGG - chr4_1:70058745-70058764 Msa0568460:three_prime_UTR 25.0%
! ATTACGACAATTTCATGAAT+TGG + chr4_1:70059077-70059096 None:intergenic 25.0%
!!! AGGAGTATTTTGAAAGATTA+AGG - chr4_1:70059202-70059221 Msa0568460:intron 25.0%
! GCAAATGTTGAATAAATACA+TGG + chr4_1:70059509-70059528 None:intergenic 25.0%
! CAAGATTTGTGTTTAAGAAT+TGG - chr4_1:70059636-70059655 Msa0568460:intron 25.0%
! AAAACCTTTGTATTCAATGA+TGG + chr4_1:70059739-70059758 None:intergenic 25.0%
! CCATATTCATTTGAAGATAT+TGG + chr4_1:70059856-70059875 None:intergenic 25.0%
! CCAATATCTTCAAATGAATA+TGG - chr4_1:70059853-70059872 Msa0568460:intron 25.0%
!! ATTAAGATTTTCATCGATAC+TGG + chr4_1:70059882-70059901 None:intergenic 25.0%
! CAATGATAATAAAAACTGAG+TGG - chr4_1:70060033-70060052 Msa0568460:CDS 25.0%
!!! ATTAAACTTTTTTCGCTGAT+AGG - chr4_1:70060067-70060086 Msa0568460:CDS 25.0%
!!! CTTTTTAAGCTTTTGTTTAC+TGG - chr4_1:70060294-70060313 Msa0568460:intron 25.0%
!!! GCAGTTCAAACTTTTTTTTA+TGG - chr4_1:70060343-70060362 Msa0568460:intron 25.0%
!! CTTTTAGTAGTAATTAAGCT+TGG - chr4_1:70060380-70060399 Msa0568460:intron 25.0%
! AGACAATAGTTACAATACTA+AGG - chr4_1:70060625-70060644 Msa0568460:intron 25.0%
! ATCATCATCATCATCAAATT+GGG - chr4_1:70058745-70058764 Msa0568460:three_prime_UTR 25.0%
! ATTACGACAATTTCATGAAT+TGG + chr4_1:70059077-70059096 None:intergenic 25.0%
!!! AGGAGTATTTTGAAAGATTA+AGG - chr4_1:70059202-70059221 Msa0568460:intron 25.0%
! GCAAATGTTGAATAAATACA+TGG + chr4_1:70059509-70059528 None:intergenic 25.0%
! CAAGATTTGTGTTTAAGAAT+TGG - chr4_1:70059636-70059655 Msa0568460:intron 25.0%
! AAAACCTTTGTATTCAATGA+TGG + chr4_1:70059739-70059758 None:intergenic 25.0%
! CCATATTCATTTGAAGATAT+TGG + chr4_1:70059856-70059875 None:intergenic 25.0%
! CCAATATCTTCAAATGAATA+TGG - chr4_1:70059853-70059872 Msa0568460:intron 25.0%
!! ATTAAGATTTTCATCGATAC+TGG + chr4_1:70059882-70059901 None:intergenic 25.0%
! CAATGATAATAAAAACTGAG+TGG - chr4_1:70060033-70060052 Msa0568460:CDS 25.0%
!!! ATTAAACTTTTTTCGCTGAT+AGG - chr4_1:70060067-70060086 Msa0568460:CDS 25.0%
!!! CTTTTTAAGCTTTTGTTTAC+TGG - chr4_1:70060294-70060313 Msa0568460:intron 25.0%
!!! GCAGTTCAAACTTTTTTTTA+TGG - chr4_1:70060343-70060362 Msa0568460:intron 25.0%
!! CTTTTAGTAGTAATTAAGCT+TGG - chr4_1:70060380-70060399 Msa0568460:intron 25.0%
! AGACAATAGTTACAATACTA+AGG - chr4_1:70060625-70060644 Msa0568460:intron 25.0%
GGGACAAAACAAAAACATAT+TGG - chr4_1:70058765-70058784 Msa0568460:three_prime_UTR 30.0%
TTCTCTACACAAATCAAACA+TGG - chr4_1:70058811-70058830 Msa0568460:three_prime_UTR 30.0%
ATACTCCTATTAATTAGGGT+AGG + chr4_1:70059190-70059209 None:intergenic 30.0%
!! TTGTTATTTCCTATGAACCA+CGG - chr4_1:70059238-70059257 Msa0568460:intron 30.0%
TCAATCACTTGAATAAGATG+AGG - chr4_1:70059601-70059620 Msa0568460:intron 30.0%
!! TTAAGAATTGGTGTCAAACA+AGG - chr4_1:70059648-70059667 Msa0568460:intron 30.0%
!! GAATACAAAGGTTTTGTCAT+TGG - chr4_1:70059744-70059763 Msa0568460:intron 30.0%
! TCATTAAGCTCTTTCTCTTT+TGG - chr4_1:70059791-70059810 Msa0568460:intron 30.0%
ACAGATATGATAGTTAACAG+AGG + chr4_1:70060121-70060140 None:intergenic 30.0%
TTAAGACTTGATTGAAAGCT+TGG - chr4_1:70060245-70060264 Msa0568460:intron 30.0%
! GAATGTTTGAAGCAATACTT+CGG - chr4_1:70060649-70060668 Msa0568460:intron 30.0%
CAATACTTCGGAGTAATTAT+AGG - chr4_1:70060661-70060680 Msa0568460:intron 30.0%
GGGACAAAACAAAAACATAT+TGG - chr4_1:70058765-70058784 Msa0568460:three_prime_UTR 30.0%
TTCTCTACACAAATCAAACA+TGG - chr4_1:70058811-70058830 Msa0568460:three_prime_UTR 30.0%
ATACTCCTATTAATTAGGGT+AGG + chr4_1:70059190-70059209 None:intergenic 30.0%
!! TTGTTATTTCCTATGAACCA+CGG - chr4_1:70059238-70059257 Msa0568460:intron 30.0%
TCAATCACTTGAATAAGATG+AGG - chr4_1:70059601-70059620 Msa0568460:intron 30.0%
!! TTAAGAATTGGTGTCAAACA+AGG - chr4_1:70059648-70059667 Msa0568460:intron 30.0%
!! GAATACAAAGGTTTTGTCAT+TGG - chr4_1:70059744-70059763 Msa0568460:intron 30.0%
! TCATTAAGCTCTTTCTCTTT+TGG - chr4_1:70059791-70059810 Msa0568460:intron 30.0%
ACAGATATGATAGTTAACAG+AGG + chr4_1:70060121-70060140 None:intergenic 30.0%
TTAAGACTTGATTGAAAGCT+TGG - chr4_1:70060245-70060264 Msa0568460:intron 30.0%
! GAATGTTTGAAGCAATACTT+CGG - chr4_1:70060649-70060668 Msa0568460:intron 30.0%
CAATACTTCGGAGTAATTAT+AGG - chr4_1:70060661-70060680 Msa0568460:intron 30.0%
ATCGAATTGAGAGAGGTTTA+GGG + chr4_1:70058967-70058986 None:intergenic 35.0%
GGGGTTATGCAGAAAAATTA+AGG + chr4_1:70059161-70059180 None:intergenic 35.0%
ATTAATTAGGGTAGGCAAAG+CGG + chr4_1:70059182-70059201 None:intergenic 35.0%
CTTTGCCTACCCTAATTAAT+AGG - chr4_1:70059182-70059201 Msa0568460:CDS 35.0%
! TCTTTACACTCAGATTAGTC+AGG - chr4_1:70059352-70059371 Msa0568460:intron 35.0%
! CTTTACACTCAGATTAGTCA+GGG - chr4_1:70059353-70059372 Msa0568460:intron 35.0%
TTATCTGTAAGCGAAATTGC+AGG + chr4_1:70059576-70059595 None:intergenic 35.0%
!! GTCATACACAATGGATTTTG+AGG - chr4_1:70059686-70059705 Msa0568460:intron 35.0%
GACTCCATCATTGAATACAA+AGG - chr4_1:70059732-70059751 Msa0568460:intron 35.0%
! TTGTTGTTGTTGTTGTACAG+TGG - chr4_1:70059917-70059936 Msa0568460:CDS 35.0%
! TGTTGTTGTTGTTGTACAGT+GGG - chr4_1:70059918-70059937 Msa0568460:CDS 35.0%
AAGAACTGAAGAAGATAACG+TGG + chr4_1:70060277-70060296 None:intergenic 35.0%
!!! TTACTGGTTTTTGCAGCAAT+TGG - chr4_1:70060310-70060329 Msa0568460:intron 35.0%
!!! TTTTTTTTATGGCTGCACGT+GGG - chr4_1:70060354-70060373 Msa0568460:intron 35.0%
AAATGATTTACCACATCCAC+AGG + chr4_1:70060578-70060597 None:intergenic 35.0%
CACAGCAAACAAACAGATAT+GGG + chr4_1:70060749-70060768 None:intergenic 35.0%
! CTCTGTTGATACATCGATTA+TGG - chr4_1:70060859-70060878 Msa0568460:five_prime_UTR 35.0%
! CTCTGTTGATACATCGATTA+TGG - chr4_1:70060859-70060878 Msa0568460:five_prime_UTR 35.0%
ATCGAATTGAGAGAGGTTTA+GGG + chr4_1:70058967-70058986 None:intergenic 35.0%
GGGGTTATGCAGAAAAATTA+AGG + chr4_1:70059161-70059180 None:intergenic 35.0%
ATTAATTAGGGTAGGCAAAG+CGG + chr4_1:70059182-70059201 None:intergenic 35.0%
CTTTGCCTACCCTAATTAAT+AGG - chr4_1:70059182-70059201 Msa0568460:CDS 35.0%
! TCTTTACACTCAGATTAGTC+AGG - chr4_1:70059352-70059371 Msa0568460:intron 35.0%
! CTTTACACTCAGATTAGTCA+GGG - chr4_1:70059353-70059372 Msa0568460:intron 35.0%
TTATCTGTAAGCGAAATTGC+AGG + chr4_1:70059576-70059595 None:intergenic 35.0%
!! GTCATACACAATGGATTTTG+AGG - chr4_1:70059686-70059705 Msa0568460:intron 35.0%
GACTCCATCATTGAATACAA+AGG - chr4_1:70059732-70059751 Msa0568460:intron 35.0%
! TTGTTGTTGTTGTTGTACAG+TGG - chr4_1:70059917-70059936 Msa0568460:CDS 35.0%
! TGTTGTTGTTGTTGTACAGT+GGG - chr4_1:70059918-70059937 Msa0568460:CDS 35.0%
AAGAACTGAAGAAGATAACG+TGG + chr4_1:70060277-70060296 None:intergenic 35.0%
!!! TTACTGGTTTTTGCAGCAAT+TGG - chr4_1:70060310-70060329 Msa0568460:intron 35.0%
!!! TTTTTTTTATGGCTGCACGT+GGG - chr4_1:70060354-70060373 Msa0568460:intron 35.0%
AAATGATTTACCACATCCAC+AGG + chr4_1:70060578-70060597 None:intergenic 35.0%
CACAGCAAACAAACAGATAT+GGG + chr4_1:70060749-70060768 None:intergenic 35.0%
! CTCTGTTGATACATCGATTA+TGG - chr4_1:70060859-70060878 Msa0568460:five_prime_UTR 35.0%
! CTCTGTTGATACATCGATTA+TGG - chr4_1:70060859-70060878 Msa0568460:five_prime_UTR 35.0%
ACACAAATCAAACATGGCCA+TGG - chr4_1:70058817-70058836 Msa0568460:three_prime_UTR 40.0%
GATCGAATTGAGAGAGGTTT+AGG + chr4_1:70058968-70058987 None:intergenic 40.0%
GAAAGTGATCGAATTGAGAG+AGG + chr4_1:70058974-70058993 None:intergenic 40.0%
TAGAAGAATATGGGGCTTAC+CGG + chr4_1:70059008-70059027 None:intergenic 40.0%
TTAATTAGGGTAGGCAAAGC+GGG + chr4_1:70059181-70059200 None:intergenic 40.0%
GAGATAAGAAATCACCCATG+TGG + chr4_1:70059271-70059290 None:intergenic 40.0%
!! AGAATTGGTGTCAAACAAGG+TGG - chr4_1:70059651-70059670 Msa0568460:intron 40.0%
!! GAATTGGTGTCAAACAAGGT+GGG - chr4_1:70059652-70059671 Msa0568460:intron 40.0%
CTCTGGTATGTCATACACAA+TGG - chr4_1:70059677-70059696 Msa0568460:intron 40.0%
!! ACACAATGGATTTTGAGGAC+AGG - chr4_1:70059691-70059710 Msa0568460:intron 40.0%
!! CACAATGGATTTTGAGGACA+GGG - chr4_1:70059692-70059711 Msa0568460:intron 40.0%
! TATTCAATGATGGAGTCGTC+TGG + chr4_1:70059729-70059748 None:intergenic 40.0%
!!! GTGGGTGTTTTATTTCAACG+CGG - chr4_1:70059936-70059955 Msa0568460:CDS 40.0%
!!! TGGGTGTTTTATTTCAACGC+GGG - chr4_1:70059937-70059956 Msa0568460:CDS 40.0%
ATTCCTGCTTAACAAAGTGC+TGG + chr4_1:70060210-70060229 None:intergenic 40.0%
AACTGAAGAAGATAACGTGG+AGG + chr4_1:70060274-70060293 None:intergenic 40.0%
!!! CTTTTTTTTATGGCTGCACG+TGG - chr4_1:70060353-70060372 Msa0568460:intron 40.0%
TAAGCTTGGCAAACGAAAGA+AGG - chr4_1:70060394-70060413 Msa0568460:intron 40.0%
AATACGAAGAGTAGGCTCTT+AGG + chr4_1:70060481-70060500 None:intergenic 40.0%
AAGAGCCTACTCTTCGTATT+TGG - chr4_1:70060481-70060500 Msa0568460:intron 40.0%
GCATTCCAAATACGAAGAGT+AGG + chr4_1:70060489-70060508 None:intergenic 40.0%
CCACAGCAAACAAACAGATA+TGG + chr4_1:70060750-70060769 None:intergenic 40.0%
! CCATATCTGTTTGTTTGCTG+TGG - chr4_1:70060747-70060766 Msa0568460:CDS 40.0%
ACAATAAACTGATGCACCAC+AGG + chr4_1:70060773-70060792 None:intergenic 40.0%
CGATGTATCAACAGAGAAAG+TGG + chr4_1:70060855-70060874 None:intergenic 40.0%
CGATGTATCAACAGAGAAAG+TGG + chr4_1:70060855-70060874 None:intergenic 40.0%
ACACAAATCAAACATGGCCA+TGG - chr4_1:70058817-70058836 Msa0568460:three_prime_UTR 40.0%
GATCGAATTGAGAGAGGTTT+AGG + chr4_1:70058968-70058987 None:intergenic 40.0%
GAAAGTGATCGAATTGAGAG+AGG + chr4_1:70058974-70058993 None:intergenic 40.0%
TAGAAGAATATGGGGCTTAC+CGG + chr4_1:70059008-70059027 None:intergenic 40.0%
TTAATTAGGGTAGGCAAAGC+GGG + chr4_1:70059181-70059200 None:intergenic 40.0%
GAGATAAGAAATCACCCATG+TGG + chr4_1:70059271-70059290 None:intergenic 40.0%
!! AGAATTGGTGTCAAACAAGG+TGG - chr4_1:70059651-70059670 Msa0568460:intron 40.0%
!! GAATTGGTGTCAAACAAGGT+GGG - chr4_1:70059652-70059671 Msa0568460:intron 40.0%
CTCTGGTATGTCATACACAA+TGG - chr4_1:70059677-70059696 Msa0568460:intron 40.0%
!! ACACAATGGATTTTGAGGAC+AGG - chr4_1:70059691-70059710 Msa0568460:intron 40.0%
!! CACAATGGATTTTGAGGACA+GGG - chr4_1:70059692-70059711 Msa0568460:intron 40.0%
! TATTCAATGATGGAGTCGTC+TGG + chr4_1:70059729-70059748 None:intergenic 40.0%
!!! GTGGGTGTTTTATTTCAACG+CGG - chr4_1:70059936-70059955 Msa0568460:CDS 40.0%
!!! TGGGTGTTTTATTTCAACGC+GGG - chr4_1:70059937-70059956 Msa0568460:CDS 40.0%
ATTCCTGCTTAACAAAGTGC+TGG + chr4_1:70060210-70060229 None:intergenic 40.0%
AACTGAAGAAGATAACGTGG+AGG + chr4_1:70060274-70060293 None:intergenic 40.0%
!!! CTTTTTTTTATGGCTGCACG+TGG - chr4_1:70060353-70060372 Msa0568460:intron 40.0%
TAAGCTTGGCAAACGAAAGA+AGG - chr4_1:70060394-70060413 Msa0568460:intron 40.0%
AATACGAAGAGTAGGCTCTT+AGG + chr4_1:70060481-70060500 None:intergenic 40.0%
AAGAGCCTACTCTTCGTATT+TGG - chr4_1:70060481-70060500 Msa0568460:intron 40.0%
GCATTCCAAATACGAAGAGT+AGG + chr4_1:70060489-70060508 None:intergenic 40.0%
CCACAGCAAACAAACAGATA+TGG + chr4_1:70060750-70060769 None:intergenic 40.0%
! CCATATCTGTTTGTTTGCTG+TGG - chr4_1:70060747-70060766 Msa0568460:CDS 40.0%
ACAATAAACTGATGCACCAC+AGG + chr4_1:70060773-70060792 None:intergenic 40.0%
CGATGTATCAACAGAGAAAG+TGG + chr4_1:70060855-70060874 None:intergenic 40.0%
CGATGTATCAACAGAGAAAG+TGG + chr4_1:70060855-70060874 None:intergenic 40.0%
AAATCAAACATGGCCATGGC+TGG - chr4_1:70058821-70058840 Msa0568460:three_prime_UTR 45.0%
ATTGGAACGCGAACGAATTG+GGG + chr4_1:70058887-70058906 None:intergenic 45.0%
GATTGGAACGCGAACGAATT+GGG + chr4_1:70058888-70058907 None:intergenic 45.0%
TGATTGGAACGCGAACGAAT+TGG + chr4_1:70058889-70058908 None:intergenic 45.0%
GAGAGAGAGCTATGAGTGAT+TGG + chr4_1:70058905-70058924 None:intergenic 45.0%
CTAAAGCGGCGATTGAGAAT+TGG + chr4_1:70058944-70058963 None:intergenic 45.0%
! AGAGAGGTTTAGGGCTAAAG+CGG + chr4_1:70058958-70058977 None:intergenic 45.0%
TCACTTTCCGTTATTGCTGC+CGG - chr4_1:70058986-70059005 Msa0568460:three_prime_UTR 45.0%
! AAACCTAGCAGCAAGTACTG+GGG + chr4_1:70059112-70059131 None:intergenic 45.0%
CAAACCTAGCAGCAAGTACT+GGG + chr4_1:70059113-70059132 None:intergenic 45.0%
TAATTAGGGTAGGCAAAGCG+GGG + chr4_1:70059180-70059199 None:intergenic 45.0%
! TCAGGGTTCGTTGTGACTTT+TGG - chr4_1:70059370-70059389 Msa0568460:intron 45.0%
ATACATGGTCGAGACAGACA+CGG + chr4_1:70059494-70059513 None:intergenic 45.0%
!!! ATTTTAGCTGCACCTGCATC+TGG - chr4_1:70059540-70059559 Msa0568460:intron 45.0%
!! TTTTAGCTGCACCTGCATCT+GGG - chr4_1:70059541-70059560 Msa0568460:intron 45.0%
! GCTCTTTCTCTTTTGGTCCA+AGG - chr4_1:70059798-70059817 Msa0568460:intron 45.0%
!! CTGGTTTTTGCAGCAATTGG+TGG - chr4_1:70060313-70060332 Msa0568460:intron 45.0%
GACTACAGTGATGCTCTGAT+TGG - chr4_1:70060514-70060533 Msa0568460:intron 45.0%
TACAGTGATGCTCTGATTGG+AGG - chr4_1:70060517-70060536 Msa0568460:intron 45.0%
AAATCAAACATGGCCATGGC+TGG - chr4_1:70058821-70058840 Msa0568460:three_prime_UTR 45.0%
ATTGGAACGCGAACGAATTG+GGG + chr4_1:70058887-70058906 None:intergenic 45.0%
GATTGGAACGCGAACGAATT+GGG + chr4_1:70058888-70058907 None:intergenic 45.0%
TGATTGGAACGCGAACGAAT+TGG + chr4_1:70058889-70058908 None:intergenic 45.0%
GAGAGAGAGCTATGAGTGAT+TGG + chr4_1:70058905-70058924 None:intergenic 45.0%
CTAAAGCGGCGATTGAGAAT+TGG + chr4_1:70058944-70058963 None:intergenic 45.0%
! AGAGAGGTTTAGGGCTAAAG+CGG + chr4_1:70058958-70058977 None:intergenic 45.0%
TCACTTTCCGTTATTGCTGC+CGG - chr4_1:70058986-70059005 Msa0568460:three_prime_UTR 45.0%
! AAACCTAGCAGCAAGTACTG+GGG + chr4_1:70059112-70059131 None:intergenic 45.0%
CAAACCTAGCAGCAAGTACT+GGG + chr4_1:70059113-70059132 None:intergenic 45.0%
TAATTAGGGTAGGCAAAGCG+GGG + chr4_1:70059180-70059199 None:intergenic 45.0%
! TCAGGGTTCGTTGTGACTTT+TGG - chr4_1:70059370-70059389 Msa0568460:intron 45.0%
ATACATGGTCGAGACAGACA+CGG + chr4_1:70059494-70059513 None:intergenic 45.0%
!!! ATTTTAGCTGCACCTGCATC+TGG - chr4_1:70059540-70059559 Msa0568460:intron 45.0%
!! TTTTAGCTGCACCTGCATCT+GGG - chr4_1:70059541-70059560 Msa0568460:intron 45.0%
! GCTCTTTCTCTTTTGGTCCA+AGG - chr4_1:70059798-70059817 Msa0568460:intron 45.0%
!! CTGGTTTTTGCAGCAATTGG+TGG - chr4_1:70060313-70060332 Msa0568460:intron 45.0%
GACTACAGTGATGCTCTGAT+TGG - chr4_1:70060514-70060533 Msa0568460:intron 45.0%
TACAGTGATGCTCTGATTGG+AGG - chr4_1:70060517-70060536 Msa0568460:intron 45.0%
CAATTACTACTACCGCGCAC+TGG - chr4_1:70058858-70058877 Msa0568460:three_prime_UTR 50.0%
CCAAACCTAGCAGCAAGTAC+TGG + chr4_1:70059114-70059133 None:intergenic 50.0%
! CCAGTACTTGCTGCTAGGTT+TGG - chr4_1:70059111-70059130 Msa0568460:CDS 50.0%
! GGGAGTGCAACAAAGCACTT+CGG - chr4_1:70059432-70059451 Msa0568460:intron 50.0%
TACATGGTCGAGACAGACAC+GGG + chr4_1:70059493-70059512 None:intergenic 50.0%
TTTAGCTGCACCTGCATCTG+GGG - chr4_1:70059542-70059561 Msa0568460:intron 50.0%
AAGCGAAATTGCAGGTGCCA+CGG + chr4_1:70059568-70059587 None:intergenic 50.0%
TTGAGGACAGGGCTAATGCA+AGG - chr4_1:70059703-70059722 Msa0568460:intron 50.0%
CTGCCAGCACTTTGTTAAGC+AGG - chr4_1:70060204-70060223 Msa0568460:intron 50.0%
AGTGATGCTCTGATTGGAGG+AGG - chr4_1:70060520-70060539 Msa0568460:intron 50.0%
CCACAGGTTTGTGTCGCATT+AGG + chr4_1:70060562-70060581 None:intergenic 50.0%
CCTAATGCGACACAAACCTG+TGG - chr4_1:70060559-70060578 Msa0568460:intron 50.0%
!! TGTTTGTTTGCTGTGGCCTG+TGG - chr4_1:70060754-70060773 Msa0568460:CDS 50.0%
CAATTACTACTACCGCGCAC+TGG - chr4_1:70058858-70058877 Msa0568460:three_prime_UTR 50.0%
CCAAACCTAGCAGCAAGTAC+TGG + chr4_1:70059114-70059133 None:intergenic 50.0%
! CCAGTACTTGCTGCTAGGTT+TGG - chr4_1:70059111-70059130 Msa0568460:CDS 50.0%
! GGGAGTGCAACAAAGCACTT+CGG - chr4_1:70059432-70059451 Msa0568460:intron 50.0%
TACATGGTCGAGACAGACAC+GGG + chr4_1:70059493-70059512 None:intergenic 50.0%
TTTAGCTGCACCTGCATCTG+GGG - chr4_1:70059542-70059561 Msa0568460:intron 50.0%
AAGCGAAATTGCAGGTGCCA+CGG + chr4_1:70059568-70059587 None:intergenic 50.0%
TTGAGGACAGGGCTAATGCA+AGG - chr4_1:70059703-70059722 Msa0568460:intron 50.0%
CTGCCAGCACTTTGTTAAGC+AGG - chr4_1:70060204-70060223 Msa0568460:intron 50.0%
AGTGATGCTCTGATTGGAGG+AGG - chr4_1:70060520-70060539 Msa0568460:intron 50.0%
CCACAGGTTTGTGTCGCATT+AGG + chr4_1:70060562-70060581 None:intergenic 50.0%
CCTAATGCGACACAAACCTG+TGG - chr4_1:70060559-70060578 Msa0568460:intron 50.0%
!! TGTTTGTTTGCTGTGGCCTG+TGG - chr4_1:70060754-70060773 Msa0568460:CDS 50.0%
AGAGAAAGCAGCACCAGCCA+TGG + chr4_1:70058837-70058856 None:intergenic 55.0%
GGGCTTACCGGCAGCAATAA+CGG + chr4_1:70058996-70059015 None:intergenic 55.0%
! AGACCCCAGTACTTGCTGCT+AGG - chr4_1:70059106-70059125 Msa0568460:CDS 55.0%
GGCATGTGTCCGTGGTTCAT+AGG + chr4_1:70059250-70059269 None:intergenic 55.0%
AACCACGGACACATGCCACA+TGG - chr4_1:70059253-70059272 Msa0568460:intron 55.0%
ACCACGGACACATGCCACAT+GGG - chr4_1:70059254-70059273 Msa0568460:intron 55.0%
GTCAAACAAGGTGGGTGCTC+TGG - chr4_1:70059660-70059679 Msa0568460:intron 55.0%
GCGACACAAACCTGTGGATG+TGG - chr4_1:70060565-70060584 Msa0568460:intron 55.0%
AGAGAAAGCAGCACCAGCCA+TGG + chr4_1:70058837-70058856 None:intergenic 55.0%
GGGCTTACCGGCAGCAATAA+CGG + chr4_1:70058996-70059015 None:intergenic 55.0%
! AGACCCCAGTACTTGCTGCT+AGG - chr4_1:70059106-70059125 Msa0568460:CDS 55.0%
GGCATGTGTCCGTGGTTCAT+AGG + chr4_1:70059250-70059269 None:intergenic 55.0%
AACCACGGACACATGCCACA+TGG - chr4_1:70059253-70059272 Msa0568460:intron 55.0%
ACCACGGACACATGCCACAT+GGG - chr4_1:70059254-70059273 Msa0568460:intron 55.0%
GTCAAACAAGGTGGGTGCTC+TGG - chr4_1:70059660-70059679 Msa0568460:intron 55.0%
GCGACACAAACCTGTGGATG+TGG - chr4_1:70060565-70060584 Msa0568460:intron 55.0%
GAATTGGGGAGACCAGTGCG+CGG + chr4_1:70058873-70058892 None:intergenic 60.0%
ACCCATGTGGCATGTGTCCG+TGG + chr4_1:70059258-70059277 None:intergenic 60.0%
GAATTGGGGAGACCAGTGCG+CGG + chr4_1:70058873-70058892 None:intergenic 60.0%
ACCCATGTGGCATGTGTCCG+TGG + chr4_1:70059258-70059277 None:intergenic 60.0%
! TGCACCTGCATCTGGGGCCG+TGG - chr4_1:70059548-70059567 Msa0568460:intron 70.0%
! TGCACCTGCATCTGGGGCCG+TGG - chr4_1:70059548-70059567 Msa0568460:intron 70.0%
! GGTGCCACGGCCCCAGATGC+AGG + chr4_1:70059555-70059574 None:intergenic 75.0%
! GGTGCCACGGCCCCAGATGC+AGG + chr4_1:70059555-70059574 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 70058745 70060926 70058745 ID=Msa0568460;Name=Msa0568460
chr4_1 mRNA 70058745 70060926 70058745 ID=Msa0568460-mRNA-1;Parent=Msa0568460;Name=Msa0568460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=85|1|1|1|1|1|3|314|179
chr4_1 exon 70058745 70059201 70058745 ID=Msa0568460-mRNA-1:exon:23550;Parent=Msa0568460-mRNA-1
chr4_1 exon 70059906 70060124 70059906 ID=Msa0568460-mRNA-1:exon:23549;Parent=Msa0568460-mRNA-1
chr4_1 exon 70060664 70060926 70060664 ID=Msa0568460-mRNA-1:exon:23548;Parent=Msa0568460-mRNA-1
chr4_1 five_prime_UTR 70060842 70060926 70060842 ID=Msa0568460-mRNA-1:five_prime_utr;Parent=Msa0568460-mRNA-1
chr4_1 CDS 70060664 70060841 70060664 ID=Msa0568460-mRNA-1:cds;Parent=Msa0568460-mRNA-1
chr4_1 CDS 70059906 70060124 70059906 ID=Msa0568460-mRNA-1:cds;Parent=Msa0568460-mRNA-1
chr4_1 CDS 70059059 70059201 70059059 ID=Msa0568460-mRNA-1:cds;Parent=Msa0568460-mRNA-1
chr4_1 three_prime_UTR 70058745 70059058 70058745 ID=Msa0568460-mRNA-1:three_prime_utr;Parent=Msa0568460-mRNA-1
Gene Sequence

>Msa0568460

ATGGCCATGGCTGGTGCTGCTTTCTCTACAATTACTACTACCGCGCACTGGTCTCCCCAATTCGTTCGCGTTCCAATCACTCATAGCTCTCTCTCTTTTCGATTTTCAACTCCAATTCTCAATCGCCGCTTTAGCCCTAAACCTCTCTCAATTCGATCACTTTCCGTTATTGCTGCCGCTGCACCTGCATCTGGGGCCGTGGCACCTGCAATTTCGCTTACAGATAATGCACTCAATCACTTGAATAAGATGAGGTCTGAACGAAGTCAAGATTTGTGTTTAAGAATTGGTGTCAAACAAGGTGGGTGCTCTGGTATGTCATACACAATGGATTTTGAGGACAGGGCTAATGCAAGGCCAGACGACTCCATCATTGAATACAAAGGTTTTGTCATTGTTTGTGATCCTAAGAGCCTACTCTTCGTATTTGGAATGCAATTAGACTACAGTGATGCTCTGATTGGAGGAGGCTTCAATTTCAAGAATCCTAATGCGACACAAACCTGTGGATGTGGTAAATCATTTAATGCAGAAATGTAA

Protein sequence

>Msa0568460

MAMAGAAFSTITTTAHWSPQFVRVPITHSSLSFRFSTPILNRRFSPKPLSIRSLSVIAAAAPASGAVAPAISLTDNALNHLNKMRSERSQDLCLRIGVKQGGCSGMSYTMDFEDRANARPDDSIIEYKGFVIVCDPKSLLFVFGMQLDYSDALIGGGFNFKNPNATQTCGCGKSFNAEM*