AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1387100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1387100 MtrunA17_Chr4g0057081 96.013 301 12 0 1 301 51 351 0.0 593
Msa1387100 MtrunA17_Chr5g0398281 78.947 266 51 3 36 299 29 291 9.60e-153 430
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1387100 AT4G22890.2 80.916 262 45 3 40 301 46 302 3.45e-154 433
Msa1387100 AT4G22890.1 81.226 261 44 3 40 300 46 301 7.97e-154 433
Msa1387100 AT4G22890.3 81.226 261 44 3 40 300 46 301 7.97e-154 433
Msa1387100 AT4G22890.4 80.843 261 42 3 40 300 46 298 6.98e-153 431
Msa1387100 AT4G22890.5 80.460 261 44 3 40 300 46 299 5.08e-152 428
Msa1387100 AT4G11960.1 74.237 295 70 4 7 300 1 290 1.08e-147 417
Msa1387100 AT4G11960.2 83.691 233 37 1 68 300 42 273 2.14e-142 403
Msa1387100 AT5G59400.1 29.412 187 100 7 139 299 75 255 5.67e-11 62.8

Find 134 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTCTTTGTCGCTCAAAAT+TGG 0.191899 tig0020882:+19963 None:intergenic
TCTGCATCGGAAACTGAATT+TGG 0.203024 tig0020882:+21536 Msa1387110:CDS
AAAATTTCTTGAAGCTTCTA+TGG 0.224918 tig0020882:-20003 Msa1387100:CDS
TCGAATTCGGGATCGGGATT+AGG 0.231335 tig0020882:-21392 Msa1387100:five_prime_UTR
ACTGAAAATACCTCCTTCTT+TGG 0.249747 tig0020882:-17646 Msa1387100:CDS
AAATGAGGTGAGACAGTAAA+TGG 0.264956 tig0020882:-21266 Msa1387100:five_prime_UTR
TTCTTCCTTGATGATATAAC+TGG 0.275096 tig0020882:-18310 Msa1387100:CDS
AGAATGGAATAAAGGGAGTT+TGG 0.277890 tig0020882:+20953 None:intergenic
TTCCAGATCGAGATCGAATT+CGG 0.292727 tig0020882:-21405 Msa1387100:five_prime_UTR
GCTTCTATGGCTTATGTATC+TGG 0.293115 tig0020882:-19990 Msa1387100:CDS
GGTATAGGCGTTCTTTCTTC+TGG 0.302007 tig0020882:-21335 Msa1387100:five_prime_UTR
CGAATTCGGGATCGGGATTA+GGG 0.304213 tig0020882:-21391 Msa1387100:five_prime_UTR
AATCACAAAATCTTTGATAA+TGG 0.309190 tig0020882:+17769 None:intergenic
CCAGCCACTGTGGTTGCATT+AGG 0.325068 tig0020882:-19126 Msa1387100:CDS
ATCCAACGGTTGTTGAGGTT+TGG 0.359805 tig0020882:-21456 Msa1387100:five_prime_UTR
GAATGGAATAAAGGGAGTTT+GGG 0.363798 tig0020882:+20954 None:intergenic
GTGCAGCCTTCGAAGTAAAA+AGG 0.365618 tig0020882:-19589 Msa1387100:intron
TTAACAGTCATTCTATTATG+AGG 0.366346 tig0020882:-20226 Msa1387100:intron
CAAGTGAAAATGAAACTAAA+AGG 0.380242 tig0020882:+17842 None:intergenic
TGTTGATCTGCAGTGGCTTT+AGG 0.383078 tig0020882:+20856 None:intergenic
AGAGCATTTGACTTTGTTGT+TGG 0.383266 tig0020882:+17594 None:intergenic
CGGTGATCTTCGTCGGATAC+AGG 0.388813 tig0020882:-21704 Msa1387100:five_prime_UTR
TCGGGATTAGGGTTAGGATT+GGG 0.406072 tig0020882:-21380 Msa1387100:five_prime_UTR
CTGAAAATACCTCCTTCTTT+GGG 0.406319 tig0020882:-17645 Msa1387100:CDS
TTTGATCTATGCTACAATAT+GGG 0.409201 tig0020882:+20533 None:intergenic
AGATTCGAAAATTAATTGAA+TGG 0.409244 tig0020882:+21594 Msa1387110:CDS
GATTCGAAAATTAATTGAAT+GGG 0.410464 tig0020882:+21595 Msa1387110:CDS
CTTTCGAGAACTGTAGTAAG+AGG 0.412524 tig0020882:+21293 None:intergenic
TCATCTTCTGCATCGGATAC+AGG 0.419954 tig0020882:-21659 Msa1387100:five_prime_UTR
CCTAATGCAACCACAGTGGC+TGG 0.425616 tig0020882:+19126 None:intergenic
TTAGGGTTAGGATTGGGATT+GGG 0.427133 tig0020882:-21374 Msa1387100:five_prime_UTR
TTCAGTTCCGCAGTTTGGAC+AGG 0.427658 tig0020882:+17663 None:intergenic
ATTGGGATTGGGAATGGTTG+AGG 0.428097 tig0020882:-21363 Msa1387100:five_prime_UTR
CTGCATCGGAAACTGAATTT+GGG 0.438313 tig0020882:+21537 Msa1387110:CDS
TTTCAAAGACAGTTGGCAAC+CGG 0.441146 tig0020882:+21174 None:intergenic
TCGGGATCGGGATTAGGGTT+AGG 0.441889 tig0020882:-21386 Msa1387100:five_prime_UTR
TCGAGATCGAATTCGGGATC+GGG 0.453351 tig0020882:-21398 Msa1387100:five_prime_UTR
GGCGCCGGCAGGATTCGATT+TGG 0.454204 tig0020882:-21507 Msa1387100:five_prime_UTR
ATCGAGATCGAATTCGGGAT+CGG 0.455294 tig0020882:-21399 Msa1387100:five_prime_UTR
TCCAGATCGAGATCGAATTC+GGG 0.460052 tig0020882:-21404 Msa1387100:five_prime_UTR
GGTGCAGAACATGGAGGAGG+GGG 0.462753 tig0020882:+20976 None:intergenic
CAGTGGCTGGGACGTTCAGC+AGG 0.463026 tig0020882:+19139 None:intergenic
AATGAGGTGAGACAGTAAAT+GGG 0.469355 tig0020882:-21265 Msa1387100:five_prime_UTR
TGTTAAAGTGAAGGCTACTT+TGG 0.472750 tig0020882:+20999 None:intergenic
TAAGTTGAAACTGAATCTAA+AGG 0.474896 tig0020882:-19937 Msa1387100:intron
AGAGCAGTTGCTTGGAGATA+AGG 0.476938 tig0020882:+21115 None:intergenic
TTGGGAATGGTTGAGGAAGA+AGG 0.481759 tig0020882:-21356 Msa1387100:five_prime_UTR
GTTAGGATTGGGATTGGGAA+TGG 0.483600 tig0020882:-21369 Msa1387100:five_prime_UTR
TAACAGTCATTCTATTATGA+GGG 0.484496 tig0020882:-20225 Msa1387100:intron
TGGGGTGCAGAACATGGAGG+AGG 0.491120 tig0020882:+20973 None:intergenic
TCCCGAATTCGATCTCGATC+TGG 0.492294 tig0020882:+21403 None:intergenic
GTATGAAAGTGAAGAGGAAG+AGG 0.496234 tig0020882:+21559 Msa1387110:CDS
ATTAGGGTTAGGATTGGGAT+TGG 0.497119 tig0020882:-21375 Msa1387100:five_prime_UTR
GGGAGTGAAATTGTTGTTGA+GGG 0.502581 tig0020882:-19618 Msa1387100:CDS
GCAGAGACAGTGGCGCCGGC+AGG 0.506364 tig0020882:-21518 Msa1387100:five_prime_UTR
GGGTGCAGAACATGGAGGAG+GGG 0.507293 tig0020882:+20975 None:intergenic
TCGGATACAGGCGGCGACGG+AGG 0.509570 tig0020882:-21692 Msa1387100:five_prime_UTR
GCGGCGAAGGCATACGTGGC+GGG 0.513672 tig0020882:+20897 None:intergenic
ATCGGGATTAGGGTTAGGAT+TGG 0.513980 tig0020882:-21381 Msa1387100:five_prime_UTR
GGAGTTTGGGGTGCAGAACA+TGG 0.522105 tig0020882:+20967 None:intergenic
ACAGGCGGCAACGGAGGAGA+AGG 0.535875 tig0020882:-21641 Msa1387100:five_prime_UTR
GTCATTCTATTATGAGGGAA+AGG 0.537540 tig0020882:-20220 Msa1387100:CDS
TGAAGAGGAAGAGGATGAAG+AGG 0.539186 tig0020882:+21568 Msa1387110:CDS
CAGTGGCTTTAGGCGAAAGT+AGG 0.539506 tig0020882:+20866 None:intergenic
GCATCGGATACAGGCGGCAA+CGG 0.540294 tig0020882:-21650 Msa1387100:five_prime_UTR
CAAATCCAGTTATATCATCA+AGG 0.541384 tig0020882:+18305 None:intergenic
CGGATACAGGCGGCGACGGA+GGG 0.544792 tig0020882:-21691 Msa1387100:five_prime_UTR
CGGCGCCACTGTCTCTGCAT+CGG 0.546447 tig0020882:+21523 Msa1387110:CDS
AAGACAGTTGGCAACCGGCT+AGG 0.549811 tig0020882:+21179 None:intergenic
CGATGCAGAGACAGTGGCGC+CGG 0.550948 tig0020882:-21522 Msa1387100:five_prime_UTR
ATGGTTGAGGAAGAAGGTAT+AGG 0.551649 tig0020882:-21350 Msa1387100:five_prime_UTR
GGGGTGCAGAACATGGAGGA+GGG 0.555413 tig0020882:+20974 None:intergenic
ATCCAAACCTCAACAACCGT+TGG 0.559731 tig0020882:+21454 Msa1387110:CDS
TTGATATCCAACGGTTGTTG+AGG 0.560071 tig0020882:-21461 Msa1387100:five_prime_UTR
ATCTCAAGGAGGAACTTATG+TGG 0.560599 tig0020882:-20170 Msa1387100:CDS
TACTTTGGTAGCAGTGAACA+TGG 0.562646 tig0020882:+21014 None:intergenic
TTCTTGCTCAAGTTCACCAA+CGG 0.563076 tig0020882:+20495 None:intergenic
AAAATGAAACTAAAAGGCTC+CGG 0.563124 tig0020882:+17848 None:intergenic
TCAGTTCCGCAGTTTGGACA+GGG 0.564708 tig0020882:+17664 None:intergenic
TGAGATCACTTATTTGCTAG+AGG 0.565242 tig0020882:-18284 Msa1387100:intron
TCGGATACAGGCGGCAACGG+AGG 0.569882 tig0020882:-21647 Msa1387100:five_prime_UTR
GTAGGAGTAATCTGCGGCGA+AGG 0.572243 tig0020882:+20884 None:intergenic
TGACAGTATAGTCCCAAAGA+AGG 0.573955 tig0020882:+17633 None:intergenic
AGGGAGTGAAATTGTTGTTG+AGG 0.575033 tig0020882:-19619 Msa1387100:CDS
TTTGCGGCGGTGATCTTCGT+CGG 0.575399 tig0020882:-21711 Msa1387100:five_prime_UTR
ATGAGGTGAGACAGTAAATG+GGG 0.575953 tig0020882:-21264 Msa1387100:five_prime_UTR
TCGTCGGATACAGGCGGCGA+CGG 0.576304 tig0020882:-21695 Msa1387100:five_prime_UTR
ATCTAGCTCTATCACTAACA+AGG 0.579354 tig0020882:-17793 Msa1387100:CDS
GTCGTCATCATCTTCTGCAT+CGG 0.579479 tig0020882:-21666 Msa1387100:five_prime_UTR
CTAATGCAACCACAGTGGCT+GGG 0.581180 tig0020882:+19127 None:intergenic
TCTCAAGGAGGAACTTATGT+GGG 0.582901 tig0020882:-20169 Msa1387100:CDS
TGAAGAATTTGATAATCTCA+AGG 0.586912 tig0020882:-20184 Msa1387100:CDS
TTACTTCGAAGGCTGCACCT+TGG 0.594902 tig0020882:+19594 None:intergenic
TCTAGCTCTATCACTAACAA+GGG 0.599765 tig0020882:-17792 Msa1387100:CDS
ATCTGCGGCGAAGGCATACG+TGG 0.603458 tig0020882:+20893 None:intergenic
AAAACCAAATCGAATCCTGC+CGG 0.604286 tig0020882:+21503 Msa1387110:CDS
ATACTGTCAATTTCAAGTGG+TGG 0.605247 tig0020882:-17619 Msa1387100:CDS
AAATTGTTGTTGAGGGTCCA+AGG 0.606961 tig0020882:-19611 Msa1387100:CDS
GATACCTTGTTGATCTGCAG+TGG 0.611032 tig0020882:+20849 None:intergenic
AAGGAGGAACTTATGTGGGA+AGG 0.615460 tig0020882:-20165 Msa1387100:CDS
GTTCTCGAAAGAAATAAATG+AGG 0.615526 tig0020882:-21281 Msa1387100:five_prime_UTR
TAGAGCTAGATATACAATGA+GGG 0.616671 tig0020882:+17805 None:intergenic
AAGGCAATGAGAACGTGTGG+AGG 0.623604 tig0020882:+21134 None:intergenic
GATAAGGCAATGAGAACGTG+TGG 0.626746 tig0020882:+21131 None:intergenic
TCTTTAAATAGTCAACAGAC+AGG 0.629626 tig0020882:+19166 None:intergenic
GAGGTGAGACAGTAAATGGG+GGG 0.632172 tig0020882:-21262 Msa1387100:five_prime_UTR
TGAGGTGAGACAGTAAATGG+GGG 0.632498 tig0020882:-21263 Msa1387100:five_prime_UTR
GATCTATGCTACAATATGGG+AGG 0.633005 tig0020882:+20536 None:intergenic
ACTATACTGTCAATTTCAAG+TGG 0.637003 tig0020882:-17622 Msa1387100:CDS
ACGTGTGGAGGGAAATGCAA+CGG 0.638647 tig0020882:+21146 None:intergenic
AGTTTCCGATGCAGAGACAG+TGG 0.639561 tig0020882:-21528 Msa1387100:five_prime_UTR
AATCTAGCGTTGATATCCAA+CGG 0.645227 tig0020882:-21470 Msa1387100:five_prime_UTR
AGGCAATGAGAACGTGTGGA+GGG 0.645810 tig0020882:+21135 None:intergenic
CAGTATAGTCCCAAAGAAGG+AGG 0.645974 tig0020882:+17636 None:intergenic
ATAGAGCTAGATATACAATG+AGG 0.647386 tig0020882:+17804 None:intergenic
GCAGTGAACATGGTGAATGG+TGG 0.648017 tig0020882:+21024 None:intergenic
GTAGCAGTGAACATGGTGAA+TGG 0.651238 tig0020882:+21021 None:intergenic
AGAGCTAGATATACAATGAG+GGG 0.654956 tig0020882:+17806 None:intergenic
TGCGGCGAAGGCATACGTGG+CGG 0.660060 tig0020882:+20896 None:intergenic
ATTTGGGTATGAAAGTGAAG+AGG 0.662435 tig0020882:+21553 Msa1387110:CDS
TGTAGTAAGAGGATGAGTCG+AGG 0.667945 tig0020882:+21304 None:intergenic
AATGGAATAAAGGGAGTTTG+GGG 0.668538 tig0020882:+20955 None:intergenic
CTAATACACATACGAACCAG+TGG 0.676394 tig0020882:-21814 Msa1387100:five_prime_UTR
AAGGGTCCCTGTCCAAACTG+CGG 0.678881 tig0020882:-17670 Msa1387100:CDS
ACGTGGCGGGAGTTGAAGTG+AGG 0.680548 tig0020882:+20910 None:intergenic
TGATCTTCGTCGGATACAGG+CGG 0.685091 tig0020882:-21701 Msa1387100:five_prime_UTR
AGGTGAGACAGTAAATGGGG+GGG 0.685975 tig0020882:-21261 Msa1387100:five_prime_UTR
AAAGCCACTGCAGATCAACA+AGG 0.689088 tig0020882:-20853 Msa1387100:intron
TCTTCTGCATCGGATACAGG+CGG 0.693921 tig0020882:-21656 Msa1387100:five_prime_UTR
GCTGAACGTCCCAGCCACTG+TGG 0.709181 tig0020882:-19136 Msa1387100:CDS
GTTTGGGGTGCAGAACATGG+AGG 0.719853 tig0020882:+20970 None:intergenic
AGAATTTGATAATCTCAAGG+AGG 0.725675 tig0020882:-20181 Msa1387100:CDS
CAATCCTAATGCAACCACAG+TGG 0.746857 tig0020882:+19122 None:intergenic
GCGAAAGTAGGAGTAATCTG+CGG 0.775526 tig0020882:+20878 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATTATTTTTTTTGAC+TGG - tig0020882:17709-17728 Msa1387100:intron 10.0%
!!! AAAATTTGTTTTGTTTAATT+TGG + tig0020882:18381-18400 None:intergenic 10.0%
!!! AATATCTTTTTCATTATAAT+TGG + tig0020882:21521-21540 Msa1387110:CDS 10.0%
!!! CTGATTATTTAAATTTTAAA+AGG - tig0020882:21754-21773 Msa1387100:five_prime_UTR 10.0%
!!! TAAACAAAACAAATTTTTCT+CGG - tig0020882:18384-18403 Msa1387100:intron 15.0%
!!! ATTTTATTTTGTGTGTAAAT+TGG - tig0020882:18634-18653 Msa1387100:intron 15.0%
!! ATAAAATAGATAAAATGACA+TGG + tig0020882:18763-18782 None:intergenic 15.0%
!! ACTCTTATATATATGAATAA+TGG - tig0020882:19346-19365 Msa1387100:intron 15.0%
!!! ATTTGTTTATATTTGAGATT+GGG - tig0020882:20026-20045 Msa1387100:intron 15.0%
!!! TATAACAGATATTGATATTT+TGG - tig0020882:21555-21574 Msa1387100:five_prime_UTR 15.0%
!! GATTCGAAAATTAATTGAAT+GGG + tig0020882:17851-17870 None:intergenic 20.0%
!! AGATTCGAAAATTAATTGAA+TGG + tig0020882:17852-17871 None:intergenic 20.0%
!!! AAACTGGAAATTGATTTTTA+AGG + tig0020882:18230-18249 None:intergenic 20.0%
!! GGAATAAAGAATAAAAAAAC+TGG + tig0020882:18246-18265 None:intergenic 20.0%
!!! TTTGGAGTGTTAAAAAAAAT+GGG + tig0020882:18363-18382 None:intergenic 20.0%
!!! ATTTGGAGTGTTAAAAAAAA+TGG + tig0020882:18364-18383 None:intergenic 20.0%
!! GATAAGTATTAAGTAAAAAG+TGG + tig0020882:18828-18847 None:intergenic 20.0%
!!! ATACTTATCATTTTTCTTTC+AGG - tig0020882:18839-18858 Msa1387100:intron 20.0%
!!! TACTTATCATTTTTCTTTCA+GGG - tig0020882:18840-18859 Msa1387100:intron 20.0%
!! AAGAAAATAAGAAACAAGTT+TGG + tig0020882:19004-19023 None:intergenic 20.0%
!!! TTATTTTCGTATAATCTGTA+TGG - tig0020882:19056-19075 Msa1387100:intron 20.0%
!!! CTATATTCTTATTTCAGTTT+TGG - tig0020882:19895-19914 Msa1387100:intron 20.0%
!!! GATTTGTTTATATTTGAGAT+TGG - tig0020882:20025-20044 Msa1387100:intron 20.0%
!!! ACTTATTACAGTCTTTTTAT+AGG - tig0020882:20244-20263 Msa1387100:intron 20.0%
!! TAAATGATAAAACGTATGTA+GGG + tig0020882:20367-20386 None:intergenic 20.0%
!! ATAAATGATAAAACGTATGT+AGG + tig0020882:20368-20387 None:intergenic 20.0%
!! TGTTATATGATCATATATCA+TGG + tig0020882:20748-20767 None:intergenic 20.0%
!! ATGGAGATTATAAAATATGT+AGG + tig0020882:20973-20992 None:intergenic 20.0%
!! ACAAAAATTGGATACTAATA+TGG + tig0020882:20992-21011 None:intergenic 20.0%
!! AATAATAAGTATGCAATTCT+AGG + tig0020882:21206-21225 None:intergenic 20.0%
!! AGAATTGCATACTTATTATT+TGG - tig0020882:21206-21225 Msa1387100:five_prime_UTR 20.0%
!! GAATTGCATACTTATTATTT+GGG - tig0020882:21207-21226 Msa1387100:five_prime_UTR 20.0%
!! AATAAAATGTTAGAAAGGAA+AGG + tig0020882:21287-21306 None:intergenic 20.0%
!! TATTATAAAATATGATTCGC+TGG + tig0020882:21443-21462 Msa1387110:CDS 20.0%
!! AATCACAAAATCTTTGATAA+TGG + tig0020882:21677-21696 Msa1387110:CDS 20.0%
!!! CAAAGATTTTGTGATTTTAA+AGG - tig0020882:21681-21700 Msa1387100:five_prime_UTR 20.0%
!!! ATTTTTTACTGTAGATGCTT+TGG + tig0020882:17669-17688 None:intergenic 25.0%
!!! TATTTTTTTTGACTGGTTTG+CGG - tig0020882:17716-17735 Msa1387100:intron 25.0%
!! TTTTATTCTTTATTCCTAGC+CGG - tig0020882:18250-18269 Msa1387100:intron 25.0%
!! TTGGAGTGTTAAAAAAAATG+GGG + tig0020882:18362-18381 None:intergenic 25.0%
! GAAAAAGAGAATGGAATAAA+GGG + tig0020882:18500-18519 None:intergenic 25.0%
! AGAAAAAGAGAATGGAATAA+AGG + tig0020882:18501-18520 None:intergenic 25.0%
! AAGTATTAAGTAAAAAGTGG+AGG + tig0020882:18825-18844 None:intergenic 25.0%
! TTTGATCTATGCTACAATAT+GGG + tig0020882:18913-18932 None:intergenic 25.0%
!! TTTTGATCTATGCTACAATA+TGG + tig0020882:18914-18933 None:intergenic 25.0%
! TTGTAGCATAGATCAAAAAA+AGG - tig0020882:18916-18935 Msa1387100:intron 25.0%
! AAATAAGAAACAAGTTTGGT+GGG + tig0020882:19000-19019 None:intergenic 25.0%
! AAAATAAGAAACAAGTTTGG+TGG + tig0020882:19001-19020 None:intergenic 25.0%
! TTAACAGTCATTCTATTATG+AGG - tig0020882:19217-19236 Msa1387100:intron 25.0%
! TAACAGTCATTCTATTATGA+GGG - tig0020882:19218-19237 Msa1387100:intron 25.0%
!! TGAAGAATTTGATAATCTCA+AGG - tig0020882:19259-19278 Msa1387100:intron 25.0%
! AAAATTTCTTGAAGCTTCTA+TGG - tig0020882:19440-19459 Msa1387100:intron 25.0%
!! TAAGTTGAAACTGAATCTAA+AGG - tig0020882:19506-19525 Msa1387100:intron 25.0%
! AGATGTAGTACTATATCATT+TGG - tig0020882:19623-19642 Msa1387100:CDS 25.0%
! TATCATTTGGACCAAATTAA+AGG - tig0020882:19636-19655 Msa1387100:intron 25.0%
! AGTTGATCTAACCTTTAATT+TGG + tig0020882:19650-19669 None:intergenic 25.0%
!!! ATCAGTTCTATTTGTTATAC+TGG - tig0020882:19702-19721 Msa1387100:intron 25.0%
!!! TCAGTTCTATTTGTTATACT+GGG - tig0020882:19703-19722 Msa1387100:intron 25.0%
! CAATGCTGAATAATAAATAC+AGG - tig0020882:19974-19993 Msa1387100:CDS 25.0%
!!! GCATTTTATTTGACATGAAA+TGG + tig0020882:20123-20142 None:intergenic 25.0%
! ATTTACTAGAATTCAACTTC+AGG - tig0020882:20149-20168 Msa1387100:CDS 25.0%
!!! TGACTTGTGTTGATTTATAA+TGG - tig0020882:20390-20409 Msa1387100:intron 25.0%
! GAAAGTGAAAATAGAACATA+TGG - tig0020882:20507-20526 Msa1387100:CDS 25.0%
!! CATTCATATATTTGATTTCG+AGG - tig0020882:20590-20609 Msa1387100:intron 25.0%
! ATCCATCTTTCTTAAATCAA+AGG - tig0020882:21013-21032 Msa1387100:CDS 25.0%
!! AACCTTTGATTTAAGAAAGA+TGG + tig0020882:21018-21037 None:intergenic 25.0%
!!! TGAAAGTACATTTTTGCTTT+AGG - tig0020882:21055-21074 Msa1387100:five_prime_UTR 25.0%
! AAGGCAATAAAATGTTAGAA+AGG + tig0020882:21292-21311 None:intergenic 25.0%
!! TTTATTGCCTTTTAAATCCA+TGG - tig0020882:21301-21320 Msa1387100:five_prime_UTR 25.0%
! AGAAGATATAAAAACTCCAA+TGG + tig0020882:21340-21359 None:intergenic 25.0%
!!! GTTTTTTTTCCATCATCAAA+TGG + tig0020882:21421-21440 None:intergenic 25.0%
! CAAGTGAAAATGAAACTAAA+AGG + tig0020882:21604-21623 Msa1387110:CDS 25.0%
!!! CTTTTAGTTTCATTTTCACT+TGG - tig0020882:21602-21621 Msa1387100:five_prime_UTR 25.0%
!!! GTTTTTTAACACGATTTTGT+AGG - tig0020882:21709-21728 Msa1387100:five_prime_UTR 25.0%
GTTCTCGAAAGAAATAAATG+AGG - tig0020882:18162-18181 Msa1387100:intron 30.0%
GAAACAGAAGAAAAAGAGAA+TGG + tig0020882:18509-18528 None:intergenic 30.0%
! ATCGTTTATTTGAGTCTTGT+TGG - tig0020882:18662-18681 Msa1387100:intron 30.0%
TTATCGAAAGAGAGACTTAA+TGG + tig0020882:19027-19046 None:intergenic 30.0%
! ATACTGTTCAACACAACTTT+TGG - tig0020882:19154-19173 Msa1387100:CDS 30.0%
GATATCTGGACTAAAATTTG+TGG - tig0020882:19176-19195 Msa1387100:CDS 30.0%
! AGAATTTGATAATCTCAAGG+AGG - tig0020882:19262-19281 Msa1387100:intron 30.0%
TTGTTGAATTACTGTTGTGT+AGG - tig0020882:19405-19424 Msa1387100:intron 30.0%
! ATTGTGTCACTGGTAATTAA+AGG - tig0020882:19595-19614 Msa1387100:CDS 30.0%
GTCATATGACTGATATTAGT+AGG + tig0020882:20058-20077 None:intergenic 30.0%
CAAGTAGTGACAAGAAATAT+AGG - tig0020882:20093-20112 Msa1387100:intron 30.0%
! AGGATTTTACCCTATCATTT+GGG - tig0020882:20169-20188 Msa1387100:CDS 30.0%
TCTTTAAATAGTCAACAGAC+AGG + tig0020882:20280-20299 None:intergenic 30.0%
GACATCAAATGGTTAATCAA+AGG + tig0020882:20421-20440 None:intergenic 30.0%
AGTAGAATGTTGACATCAAA+TGG + tig0020882:20432-20451 None:intergenic 30.0%
ATCATATATTTGGCAGAAGT+AGG + tig0020882:20479-20498 None:intergenic 30.0%
ACTTCTGCCAAATATATGAT+TGG - tig0020882:20479-20498 Msa1387100:CDS 30.0%
! TCTGAGACCAATCATATATT+TGG + tig0020882:20489-20508 None:intergenic 30.0%
TATGACTTAAGCGTCTATTT+GGG - tig0020882:20643-20662 Msa1387100:intron 30.0%
!! ATTTTGTTGCTTGCGTAATT+TGG - tig0020882:20799-20818 Msa1387100:intron 30.0%
GAAAGATGGATGACAAAAAT+TGG + tig0020882:21004-21023 None:intergenic 30.0%
GGAGTGGAATTAAAAGTTAA+AGG + tig0020882:21096-21115 None:intergenic 30.0%
! TTCTTCCTTGATGATATAAC+TGG - tig0020882:21133-21152 Msa1387100:five_prime_UTR 30.0%
CAAATCCAGTTATATCATCA+AGG + tig0020882:21141-21160 None:intergenic 30.0%
! TGACAGTAGTTGCATTTTTA+AGG - tig0020882:21260-21279 Msa1387100:five_prime_UTR 30.0%
ATCATCAAATGGTAATCCAT+TGG + tig0020882:21410-21429 None:intergenic 30.0%
!! AATGGATTACCATTTGATGA+TGG - tig0020882:21409-21428 Msa1387100:five_prime_UTR 30.0%
AAAATGAAACTAAAAGGCTC+CGG + tig0020882:21598-21617 Msa1387110:CDS 30.0%
!! TTTCATTTTCACTTGGTTTG+CGG - tig0020882:21609-21628 Msa1387100:five_prime_UTR 30.0%
TAGAGCTAGATATACAATGA+GGG + tig0020882:21641-21660 Msa1387110:CDS 30.0%
ATAGAGCTAGATATACAATG+AGG + tig0020882:21642-21661 Msa1387110:CDS 30.0%
ACTATACTGTCAATTTCAAG+TGG - tig0020882:21821-21840 Msa1387100:five_prime_UTR 30.0%
ATTTGGGTATGAAAGTGAAG+AGG + tig0020882:17893-17912 None:intergenic 35.0%
!! AATCTAGCGTTGATATCCAA+CGG - tig0020882:17973-17992 Msa1387100:intron 35.0%
AAATGAGGTGAGACAGTAAA+TGG - tig0020882:18177-18196 Msa1387100:intron 35.0%
AATGAGGTGAGACAGTAAAT+GGG - tig0020882:18178-18197 Msa1387100:intron 35.0%
!! GGCTTATTTTCAAAGACAGT+TGG + tig0020882:18279-18298 None:intergenic 35.0%
AAAAATGAAGAGCAGTTGCT+TGG + tig0020882:18339-18358 None:intergenic 35.0%
TGTTAAAGTGAAGGCTACTT+TGG + tig0020882:18447-18466 None:intergenic 35.0%
AATGGAATAAAGGGAGTTTG+GGG + tig0020882:18491-18510 None:intergenic 35.0%
GAATGGAATAAAGGGAGTTT+GGG + tig0020882:18492-18511 None:intergenic 35.0%
AGAATGGAATAAAGGGAGTT+TGG + tig0020882:18493-18512 None:intergenic 35.0%
CCTAATTTAACCAAGGTCTT+GGG + tig0020882:18734-18753 None:intergenic 35.0%
TCCTAATTTAACCAAGGTCT+TGG + tig0020882:18735-18754 None:intergenic 35.0%
GTTCTCTCCTAATTTAACCA+AGG + tig0020882:18741-18760 None:intergenic 35.0%
! ATTTTTCTTTCAGGGAATGC+TGG - tig0020882:18848-18867 Msa1387100:intron 35.0%
AAAAAGGAGAAGAAATCCGT+TGG - tig0020882:18932-18951 Msa1387100:intron 35.0%
! AGTTTGGTGGGATATATACT+TGG + tig0020882:18988-19007 None:intergenic 35.0%
GTTGTGTTGAACAGTATCAA+CGG + tig0020882:19151-19170 None:intergenic 35.0%
! CAACACAACTTTTGGATATC+TGG - tig0020882:19162-19181 Msa1387100:CDS 35.0%
GTCATTCTATTATGAGGGAA+AGG - tig0020882:19223-19242 Msa1387100:intron 35.0%
GAATTACTGTTGTGTAGGTT+CGG - tig0020882:19410-19429 Msa1387100:intron 35.0%
TACTCTTTGTCGCTCAAAAT+TGG + tig0020882:19483-19502 None:intergenic 35.0%
! GAAAAGTCTTCTGTGTTTTG+TGG - tig0020882:19560-19579 Msa1387100:intron 35.0%
! GTTTTGTATCTTCCTCTTTC+TGG - tig0020882:19764-19783 Msa1387100:intron 35.0%
CAGTAAATTATGCCAGAAAG+AGG + tig0020882:19779-19798 None:intergenic 35.0%
GGCATAATTTACTGAACTCA+TGG - tig0020882:19785-19804 Msa1387100:intron 35.0%
! CACTTACCTTTTTACTTCGA+AGG + tig0020882:19863-19882 None:intergenic 35.0%
GTAGTGACAAGAAATATAGG+AGG - tig0020882:20096-20115 Msa1387100:intron 35.0%
! CAGGATTTTACCCTATCATT+TGG - tig0020882:20168-20187 Msa1387100:CDS 35.0%
TAAAACGTATGTAGGGAAAC+AGG + tig0020882:20360-20379 None:intergenic 35.0%
CTATGACTTAAGCGTCTATT+TGG - tig0020882:20642-20661 Msa1387100:intron 35.0%
! TCTATTTGGGAAGGTGATTT+TGG - tig0020882:20656-20675 Msa1387100:intron 35.0%
AGCATGTAGAATATGACATC+AGG + tig0020882:20950-20969 None:intergenic 35.0%
AGAAGAATCTAACAGATCAC+AGG + tig0020882:21117-21136 None:intergenic 35.0%
! TGAGATCACTTATTTGCTAG+AGG - tig0020882:21159-21178 Msa1387100:five_prime_UTR 35.0%
ACTGCTTCCATGGATTTAAA+AGG + tig0020882:21311-21330 None:intergenic 35.0%
ATGAAAAAAATATCCCCTGC+AGG - tig0020882:21362-21381 Msa1387100:five_prime_UTR 35.0%
TGAAAAAAATATCCCCTGCA+GGG - tig0020882:21363-21382 Msa1387100:five_prime_UTR 35.0%
ATTAGAGAGCAAAATGCCAA+TGG - tig0020882:21391-21410 Msa1387100:five_prime_UTR 35.0%
! GGATGAGTTTTGCAAATCTA+TGG + tig0020882:21500-21519 Msa1387110:CDS 35.0%
AGAGCTAGATATACAATGAG+GGG + tig0020882:21640-21659 Msa1387110:CDS 35.0%
!! ATCTAGCTCTATCACTAACA+AGG - tig0020882:21650-21669 Msa1387100:five_prime_UTR 35.0%
!! TCTAGCTCTATCACTAACAA+GGG - tig0020882:21651-21670 Msa1387100:five_prime_UTR 35.0%
ACTGAAAATACCTCCTTCTT+TGG - tig0020882:21797-21816 Msa1387100:five_prime_UTR 35.0%
CTGAAAATACCTCCTTCTTT+GGG - tig0020882:21798-21817 Msa1387100:five_prime_UTR 35.0%
! ATACTGTCAATTTCAAGTGG+TGG - tig0020882:21824-21843 Msa1387100:five_prime_UTR 35.0%
! AGAGCATTTGACTTTGTTGT+TGG + tig0020882:21852-21871 Msa1387110:intron 35.0%
CTAATACACATACGAACCAG+TGG - tig0020882:17629-17648 Msa1387100:CDS 40.0%
!! GGTTGATTTTTACTTGCCAC+TGG + tig0020882:17648-17667 None:intergenic 40.0%
!!! TTTTTTTGACTGGTTTGCGG+CGG - tig0020882:17719-17738 Msa1387100:intron 40.0%
GTATGAAAGTGAAGAGGAAG+AGG + tig0020882:17887-17906 None:intergenic 40.0%
CTGCATCGGAAACTGAATTT+GGG + tig0020882:17909-17928 None:intergenic 40.0%
TCTGCATCGGAAACTGAATT+TGG + tig0020882:17910-17929 None:intergenic 40.0%
AAAACCAAATCGAATCCTGC+CGG + tig0020882:17943-17962 None:intergenic 40.0%
TTGATATCCAACGGTTGTTG+AGG - tig0020882:17982-18001 Msa1387100:intron 40.0%
TTCCAGATCGAGATCGAATT+CGG - tig0020882:18038-18057 Msa1387100:intron 40.0%
ATTAGGGTTAGGATTGGGAT+TGG - tig0020882:18068-18087 Msa1387100:intron 40.0%
TTAGGGTTAGGATTGGGATT+GGG - tig0020882:18069-18088 Msa1387100:intron 40.0%
! ATGGTTGAGGAAGAAGGTAT+AGG - tig0020882:18093-18112 Msa1387100:intron 40.0%
CTTTCGAGAACTGTAGTAAG+AGG + tig0020882:18153-18172 None:intergenic 40.0%
ATGAGGTGAGACAGTAAATG+GGG - tig0020882:18179-18198 Msa1387100:intron 40.0%
TTTCAAAGACAGTTGGCAAC+CGG + tig0020882:18272-18291 None:intergenic 40.0%
! TACTTTGGTAGCAGTGAACA+TGG + tig0020882:18432-18451 None:intergenic 40.0%
TTTAACCAAGGTCTTGGGTT+CGG + tig0020882:18729-18748 None:intergenic 40.0%
CCCAAGACCTTGGTTAAATT+AGG - tig0020882:18731-18750 Msa1387100:intron 40.0%
GATCTATGCTACAATATGGG+AGG + tig0020882:18910-18929 None:intergenic 40.0%
TTCTTGCTCAAGTTCACCAA+CGG + tig0020882:18951-18970 None:intergenic 40.0%
ATCTCAAGGAGGAACTTATG+TGG - tig0020882:19273-19292 Msa1387100:intron 40.0%
TCTCAAGGAGGAACTTATGT+GGG - tig0020882:19274-19293 Msa1387100:intron 40.0%
CAGTGTTGTCATGCTAAGTA+TGG - tig0020882:19304-19323 Msa1387100:intron 40.0%
GCTTCTATGGCTTATGTATC+TGG - tig0020882:19453-19472 Msa1387100:intron 40.0%
TGAAGTCATCATTGTGTCAC+TGG - tig0020882:19585-19604 Msa1387100:intron 40.0%
!! ATGGTTGTTTTCCAGAGAGA+AGG - tig0020882:19804-19823 Msa1387100:intron 40.0%
!! TGGTTGTTTTCCAGAGAGAA+GGG - tig0020882:19805-19824 Msa1387100:intron 40.0%
! AGGGAGTGAAATTGTTGTTG+AGG - tig0020882:19824-19843 Msa1387100:intron 40.0%
! GGGAGTGAAATTGTTGTTGA+GGG - tig0020882:19825-19844 Msa1387100:intron 40.0%
! AAATTGTTGTTGAGGGTCCA+AGG - tig0020882:19832-19851 Msa1387100:intron 40.0%
CTCGTCAATCCCAAATGATA+GGG + tig0020882:20181-20200 None:intergenic 40.0%
ACTCGTCAATCCCAAATGAT+AGG + tig0020882:20182-20201 None:intergenic 40.0%
GGTTGCATTAGGATTGTAAG+TGG - tig0020882:20328-20347 Msa1387100:intron 40.0%
ACTTAAGCGTCTATTTGGGA+AGG - tig0020882:20647-20666 Msa1387100:intron 40.0%
! ATTTGGGAAGGTGATTTTGG+AGG - tig0020882:20659-20678 Msa1387100:intron 40.0%
! TTTGGGAAGGTGATTTTGGA+GGG - tig0020882:20660-20679 Msa1387100:intron 40.0%
!! AAGGTGATTTTGGAGGGTTT+TGG - tig0020882:20666-20685 Msa1387100:intron 40.0%
!!! TGATTTTGGAGGGTTTTGGA+GGG - tig0020882:20670-20689 Msa1387100:intron 40.0%
TCCTTTCTATCCCTTCCTTA+GGG + tig0020882:20875-20894 None:intergenic 40.0%
TTCCTTTCTATCCCTTCCTT+AGG + tig0020882:20876-20895 None:intergenic 40.0%
AATCTAACAGATCACAGGAG+TGG + tig0020882:21112-21131 None:intergenic 40.0%
TGTCAGATGCTATGACATTC+TGG + tig0020882:21245-21264 None:intergenic 40.0%
ATGGTGATAAACTGCTTCCA+TGG + tig0020882:21321-21340 None:intergenic 40.0%
TGGAAGCAGTTTATCACCAT+TGG - tig0020882:21321-21340 Msa1387100:five_prime_UTR 40.0%
TCTCTAATGTTTACCCTGCA+GGG + tig0020882:21379-21398 None:intergenic 40.0%
! GTATTTTCAGTTCCGCAGTT+TGG + tig0020882:21788-21807 Msa1387110:intron 40.0%
TGACAGTATAGTCCCAAAGA+AGG + tig0020882:21813-21832 Msa1387110:intron 40.0%
GTCGTCATCATCTTCTGCAT+CGG - tig0020882:17777-17796 Msa1387100:CDS 45.0%
TCATCTTCTGCATCGGATAC+AGG - tig0020882:17784-17803 Msa1387100:CDS 45.0%
TGAAGAGGAAGAGGATGAAG+AGG + tig0020882:17878-17897 None:intergenic 45.0%
ATCCAACGGTTGTTGAGGTT+TGG - tig0020882:17987-18006 Msa1387100:intron 45.0%
ATCCAAACCTCAACAACCGT+TGG + tig0020882:17992-18011 None:intergenic 45.0%
TCCAGATCGAGATCGAATTC+GGG - tig0020882:18039-18058 Msa1387100:intron 45.0%
ATCGAGATCGAATTCGGGAT+CGG - tig0020882:18044-18063 Msa1387100:intron 45.0%
ATCGGGATTAGGGTTAGGAT+TGG - tig0020882:18062-18081 Msa1387100:intron 45.0%
TCGGGATTAGGGTTAGGATT+GGG - tig0020882:18063-18082 Msa1387100:intron 45.0%
GTTAGGATTGGGATTGGGAA+TGG - tig0020882:18074-18093 Msa1387100:intron 45.0%
ATTGGGATTGGGAATGGTTG+AGG - tig0020882:18080-18099 Msa1387100:intron 45.0%
TTGGGAATGGTTGAGGAAGA+AGG - tig0020882:18087-18106 Msa1387100:intron 45.0%
GGTATAGGCGTTCTTTCTTC+TGG - tig0020882:18108-18127 Msa1387100:intron 45.0%
TGTAGTAAGAGGATGAGTCG+AGG + tig0020882:18142-18161 None:intergenic 45.0%
TGAGGTGAGACAGTAAATGG+GGG - tig0020882:18180-18199 Msa1387100:intron 45.0%
GATAAGGCAATGAGAACGTG+TGG + tig0020882:18315-18334 None:intergenic 45.0%
AGAGCAGTTGCTTGGAGATA+AGG + tig0020882:18331-18350 None:intergenic 45.0%
GTAGCAGTGAACATGGTGAA+TGG + tig0020882:18425-18444 None:intergenic 45.0%
GCGAAAGTAGGAGTAATCTG+CGG + tig0020882:18568-18587 None:intergenic 45.0%
TGTTGATCTGCAGTGGCTTT+AGG + tig0020882:18590-18609 None:intergenic 45.0%
AAAGCCACTGCAGATCAACA+AGG - tig0020882:18590-18609 Msa1387100:intron 45.0%
GATACCTTGTTGATCTGCAG+TGG + tig0020882:18597-18616 None:intergenic 45.0%
GTTGGACGACTCAAAATGAG+TGG - tig0020882:18680-18699 Msa1387100:intron 45.0%
! GGGAATGCTGGAGATTTTGA+CGG - tig0020882:18860-18879 Msa1387100:intron 45.0%
AAGGAGGAACTTATGTGGGA+AGG - tig0020882:19278-19297 Msa1387100:intron 45.0%
CAATTTCACTCCCTTCTCTC+TGG + tig0020882:19818-19837 None:intergenic 45.0%
GTGCAGCCTTCGAAGTAAAA+AGG - tig0020882:19854-19873 Msa1387100:intron 45.0%
CAATCCTAATGCAACCACAG+TGG + tig0020882:20324-20343 None:intergenic 45.0%
!! GTGATTTTGGAGGGTTTTGG+AGG - tig0020882:20669-20688 Msa1387100:intron 45.0%
TCCTTAGGGTATGTTTGGGA+GGG + tig0020882:20861-20880 None:intergenic 45.0%
TTCCTTAGGGTATGTTTGGG+AGG + tig0020882:20862-20881 None:intergenic 45.0%
TCCCAAACATACCCTAAGGA+AGG - tig0020882:20861-20880 Msa1387100:CDS 45.0%
CCCTTCCTTAGGGTATGTTT+GGG + tig0020882:20865-20884 None:intergenic 45.0%
CCCAAACATACCCTAAGGAA+GGG - tig0020882:20862-20881 Msa1387100:CDS 45.0%
TCCCTTCCTTAGGGTATGTT+TGG + tig0020882:20866-20885 None:intergenic 45.0%
ACCCTAAGGAAGGGATAGAA+AGG - tig0020882:20871-20890 Msa1387100:CDS 45.0%
CTCTAATGTTTACCCTGCAG+GGG + tig0020882:21378-21397 None:intergenic 45.0%
CTCTCTAATGTTTACCCTGC+AGG + tig0020882:21380-21399 None:intergenic 45.0%
CAGTATAGTCCCAAAGAAGG+AGG + tig0020882:21810-21829 Msa1387110:intron 45.0%
!!! TGATTATTTAAATTTTAAAA+GGG - tig0020882:21755-21774 Msa1387100:five_prime_UTR 5.0%
TGATCTTCGTCGGATACAGG+CGG - tig0020882:17742-17761 Msa1387100:intron 50.0%
TCTTCTGCATCGGATACAGG+CGG - tig0020882:17787-17806 Msa1387100:CDS 50.0%
AGTTTCCGATGCAGAGACAG+TGG - tig0020882:17915-17934 Msa1387100:intron 50.0%
TCCCGAATTCGATCTCGATC+TGG + tig0020882:18043-18062 None:intergenic 50.0%
TCGAGATCGAATTCGGGATC+GGG - tig0020882:18045-18064 Msa1387100:intron 50.0%
TCGAATTCGGGATCGGGATT+AGG - tig0020882:18051-18070 Msa1387100:intron 50.0%
CGAATTCGGGATCGGGATTA+GGG - tig0020882:18052-18071 Msa1387100:intron 50.0%
GAGGTGAGACAGTAAATGGG+GGG - tig0020882:18181-18200 Msa1387100:intron 50.0%
AGGTGAGACAGTAAATGGGG+GGG - tig0020882:18182-18201 Msa1387100:intron 50.0%
! AGTAAATGGGGGGGTGTAAC+TGG - tig0020882:18191-18210 Msa1387100:intron 50.0%
ACGTGTGGAGGGAAATGCAA+CGG + tig0020882:18300-18319 None:intergenic 50.0%
AGGCAATGAGAACGTGTGGA+GGG + tig0020882:18311-18330 None:intergenic 50.0%
AAGGCAATGAGAACGTGTGG+AGG + tig0020882:18312-18331 None:intergenic 50.0%
GCAGTGAACATGGTGAATGG+TGG + tig0020882:18422-18441 None:intergenic 50.0%
!! AGGAGGGGGTGTTAAAGTGA+AGG + tig0020882:18456-18475 None:intergenic 50.0%
!! CAGTGGCTTTAGGCGAAAGT+AGG + tig0020882:18580-18599 None:intergenic 50.0%
TTACTTCGAAGGCTGCACCT+TGG + tig0020882:19852-19871 None:intergenic 50.0%
CTAATGCAACCACAGTGGCT+GGG + tig0020882:20319-20338 None:intergenic 50.0%
! TATGTTTGGGAGGGGGGTTT+TGG + tig0020882:20852-20871 None:intergenic 50.0%
TTAGGGTATGTTTGGGAGGG+GGG + tig0020882:20858-20877 None:intergenic 50.0%
CTTAGGGTATGTTTGGGAGG+GGG + tig0020882:20859-20878 None:intergenic 50.0%
CCTTAGGGTATGTTTGGGAG+GGG + tig0020882:20860-20879 None:intergenic 50.0%
TCAGTTCCGCAGTTTGGACA+GGG + tig0020882:21782-21801 Msa1387110:intron 50.0%
TTCAGTTCCGCAGTTTGGAC+AGG + tig0020882:21783-21802 Msa1387110:intron 50.0%
TTTGCGGCGGTGATCTTCGT+CGG - tig0020882:17732-17751 Msa1387100:intron 55.0%
CGGTGATCTTCGTCGGATAC+AGG - tig0020882:17739-17758 Msa1387100:intron 55.0%
TCGGGATCGGGATTAGGGTT+AGG - tig0020882:18057-18076 Msa1387100:intron 55.0%
AAGACAGTTGGCAACCGGCT+AGG + tig0020882:18267-18286 None:intergenic 55.0%
! GTTTGGGGTGCAGAACATGG+AGG + tig0020882:18476-18495 None:intergenic 55.0%
! GGAGTTTGGGGTGCAGAACA+TGG + tig0020882:18479-18498 None:intergenic 55.0%
GTAGGAGTAATCTGCGGCGA+AGG + tig0020882:18562-18581 None:intergenic 55.0%
CAAGTCCGAACCCAAGACCT+TGG - tig0020882:18721-18740 Msa1387100:intron 55.0%
CCTAATGCAACCACAGTGGC+TGG + tig0020882:20320-20339 None:intergenic 55.0%
CCAGCCACTGTGGTTGCATT+AGG - tig0020882:20317-20336 Msa1387100:intron 55.0%
!!! TTTGGGAGGGGGGTTTTGGA+GGG + tig0020882:20848-20867 None:intergenic 55.0%
CCCCTCCCAAACATACCCTA+AGG - tig0020882:20857-20876 Msa1387100:CDS 55.0%
GGATTGTTGAGTGCAGCTGC+CGG - tig0020882:21576-21595 Msa1387100:five_prime_UTR 55.0%
AAGGGTCCCTGTCCAAACTG+CGG - tig0020882:21773-21792 Msa1387100:five_prime_UTR 55.0%
GCATCGGATACAGGCGGCAA+CGG - tig0020882:17793-17812 Msa1387100:CDS 60.0%
GGTGCAGAACATGGAGGAGG+GGG + tig0020882:18470-18489 None:intergenic 60.0%
GGGTGCAGAACATGGAGGAG+GGG + tig0020882:18471-18490 None:intergenic 60.0%
GGGGTGCAGAACATGGAGGA+GGG + tig0020882:18472-18491 None:intergenic 60.0%
TGGGGTGCAGAACATGGAGG+AGG + tig0020882:18473-18492 None:intergenic 60.0%
! ACGTGGCGGGAGTTGAAGTG+AGG + tig0020882:18536-18555 None:intergenic 60.0%
! ATCTGCGGCGAAGGCATACG+TGG + tig0020882:18553-18572 None:intergenic 60.0%
!!! AGGGGGGTTTTGGAGGGAAG+GGG + tig0020882:20842-20861 None:intergenic 60.0%
!!! GAGGGGGGTTTTGGAGGGAA+GGG + tig0020882:20843-20862 None:intergenic 60.0%
!! GTTTGGGAGGGGGGTTTTGG+AGG + tig0020882:20849-20868 None:intergenic 60.0%
TCGTCGGATACAGGCGGCGA+CGG - tig0020882:17748-17767 Msa1387100:intron 65.0%
TCGGATACAGGCGGCAACGG+AGG - tig0020882:17796-17815 Msa1387100:CDS 65.0%
ACAGGCGGCAACGGAGGAGA+AGG - tig0020882:17802-17821 Msa1387100:CDS 65.0%
CGGCGCCACTGTCTCTGCAT+CGG + tig0020882:17923-17942 None:intergenic 65.0%
CGATGCAGAGACAGTGGCGC+CGG - tig0020882:17921-17940 Msa1387100:intron 65.0%
!! GGCGCCGGCAGGATTCGATT+TGG - tig0020882:17936-17955 Msa1387100:intron 65.0%
! TGCGGCGAAGGCATACGTGG+CGG + tig0020882:18550-18569 None:intergenic 65.0%
CAGTGGCTGGGACGTTCAGC+AGG + tig0020882:20307-20326 None:intergenic 65.0%
GCTGAACGTCCCAGCCACTG+TGG - tig0020882:20307-20326 Msa1387100:intron 65.0%
!!! GGGGTTTTGGAGGGAAGGGG+AGG + tig0020882:20839-20858 None:intergenic 65.0%
!!! GGAGGGGGGTTTTGGAGGGA+AGG + tig0020882:20844-20863 None:intergenic 65.0%
TCGGATACAGGCGGCGACGG+AGG - tig0020882:17751-17770 Msa1387100:intron 70.0%
CGGATACAGGCGGCGACGGA+GGG - tig0020882:17752-17771 Msa1387100:intron 70.0%
! GCGGCGAAGGCATACGTGGC+GGG + tig0020882:18549-18568 None:intergenic 70.0%
!! GCAGAGACAGTGGCGCCGGC+AGG - tig0020882:17925-17944 Msa1387100:intron 75.0%
Chromosome Type Strat End Strand Name
tig0020882 gene 17588 21877 17588 ID=Msa1387100;Name=Msa1387100
tig0020882 mRNA 17588 21877 17588 ID=Msa1387100-mRNA-1;Parent=Msa1387100;Name=Msa1387100-mRNA-1;_AED=0.11;_eAED=0.11;_QI=843|1|0.88|1|1|1|9|0|301
tig0020882 exon 17588 17689 17588 ID=Msa1387100-mRNA-1:exon:10509;Parent=Msa1387100-mRNA-1
tig0020882 exon 17763 17873 17763 ID=Msa1387100-mRNA-1:exon:10508;Parent=Msa1387100-mRNA-1
tig0020882 exon 18285 18336 18285 ID=Msa1387100-mRNA-1:exon:10507;Parent=Msa1387100-mRNA-1
tig0020882 exon 19123 19199 19123 ID=Msa1387100-mRNA-1:exon:10506;Parent=Msa1387100-mRNA-1
tig0020882 exon 19590 19646 19590 ID=Msa1387100-mRNA-1:exon:10505;Parent=Msa1387100-mRNA-1
tig0020882 exon 19938 20038 19938 ID=Msa1387100-mRNA-1:exon:10504;Parent=Msa1387100-mRNA-1
tig0020882 exon 20145 20241 20145 ID=Msa1387100-mRNA-1:exon:10503;Parent=Msa1387100-mRNA-1
tig0020882 exon 20477 20604 20477 ID=Msa1387100-mRNA-1:exon:10502;Parent=Msa1387100-mRNA-1
tig0020882 exon 20854 21877 20854 ID=Msa1387100-mRNA-1:exon:10501;Parent=Msa1387100-mRNA-1
tig0020882 five_prime_UTR 21035 21877 21035 ID=Msa1387100-mRNA-1:five_prime_utr;Parent=Msa1387100-mRNA-1
tig0020882 CDS 20854 21034 20854 ID=Msa1387100-mRNA-1:cds;Parent=Msa1387100-mRNA-1
tig0020882 CDS 20477 20604 20477 ID=Msa1387100-mRNA-1:cds;Parent=Msa1387100-mRNA-1
tig0020882 CDS 20145 20241 20145 ID=Msa1387100-mRNA-1:cds;Parent=Msa1387100-mRNA-1
tig0020882 CDS 19938 20038 19938 ID=Msa1387100-mRNA-1:cds;Parent=Msa1387100-mRNA-1
tig0020882 CDS 19590 19646 19590 ID=Msa1387100-mRNA-1:cds;Parent=Msa1387100-mRNA-1
tig0020882 CDS 19123 19199 19123 ID=Msa1387100-mRNA-1:cds;Parent=Msa1387100-mRNA-1
tig0020882 CDS 18285 18336 18285 ID=Msa1387100-mRNA-1:cds;Parent=Msa1387100-mRNA-1
tig0020882 CDS 17763 17873 17763 ID=Msa1387100-mRNA-1:cds;Parent=Msa1387100-mRNA-1
tig0020882 CDS 17588 17689 17588 ID=Msa1387100-mRNA-1:cds;Parent=Msa1387100-mRNA-1
Gene Sequence

>Msa1387100

ATGTTCACTGCTACCAAAGTAGCCTTCACTTTAACACCCCCTCCTCCATGTTCTGCACCCCAAACTCCCTTTATTCCATTCTCTTTTTCTTCTGTTTCTCGTCCTCACTTCAACTCCCGCCACGTATGCCTTCGCCGCAGATTACTCCTACTTTCGCCTAAAGCCACTGCAGATCAACAAGGGAATGCTGGAGATTTTGACGGAGATGCTGTTATTGATACTAATGTCCTCCCATATTGTAGCATAGATCAAAAAAAGGAGAAGAAATCCGTTGGTGAACTTGAGCAAGAATTTCTTCAAGCACTCCAATCATTCTATTATGAGGGAAAGGCTATTATGTCAAATGAAGAATTTGATAATCTCAAGGAGGAACTTATGTGGGAAGGAAGCAGTGTTGTCATGCTAAGTTCGGATGAACAAAAATTTCTTGAAGCTTCTATGGCTTATGTATCTGGAAATCCAATTTTGAGCGACAAAGAGTATGATAAGTTGAAACTGAATCTAAAGAGAGAAGGGAGTGAAATTGTTGTTGAGGGTCCAAGGTGCAGCCTTCGAAGTAAAAAGGTTTACAGTGACCTGTCTGTTGACTATTTAAAGATGTTCCTGCTGAACGTCCCAGCCACTGTGGTTGCATTAGGATTATTCTTCTTCCTTGATGATATAACTGGATTTGAGATCACTTATTTGCTAGAGCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCGGCTGTTCCCCTCATTGTATATCTAGCTCTATCACTAACAAGGGCCATTATCAAAGATTTTGTGATTTTAAAGGGTCCCTGTCCAAACTGCGGAACTGAAAATACCTCCTTCTTTGGGACTATACTGTCAATTTCAAGTGGTGGTTCCAACAACAAAGTCAAATGCTCTGAGTAA

Protein sequence

>Msa1387100

MFTATKVAFTLTPPPPCSAPQTPFIPFSFSSVSRPHFNSRHVCLRRRLLLLSPKATADQQGNAGDFDGDAVIDTNVLPYCSIDQKKEKKSVGELEQEFLQALQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGNPILSDKEYDKLKLNLKREGSEIVVEGPRCSLRSKKVYSDLSVDYLKMFLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLALSLTRAIIKDFVILKGPCPNCGTENTSFFGTILSISSGGSNNKVKCSE*