AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0476140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476140 MtrunA17_Chr3g0146001 95.511 401 5 2 1 396 1 393 0.0 776
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476140 AT4G35250.1 93.353 331 22 0 66 396 65 395 0.0 650

Find 127 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAATAAATTTAAGATTAT+TGG 0.101403 3_3:+79899949 Msa0476140:five_prime_UTR
ATTCCAATGCAGGGTCTTAT+TGG 0.228861 3_3:+79900871 Msa0476140:intron
CTCTAATGTAATTATATCTT+TGG 0.230175 3_3:-79901865 None:intergenic
GAGAACTTCCTCCGTGATTC+TGG 0.246351 3_3:+79900743 Msa0476140:CDS
AGCTGACTTCCTTCGTGATT+GGG 0.252587 3_3:+79900472 Msa0476140:CDS
CAGCTGACTTCCTTCGTGAT+TGG 0.278974 3_3:+79900471 Msa0476140:CDS
AGTATCCATGTAAGCGATTC+TGG 0.290196 3_3:-79900950 None:intergenic
GGTAAACTTCTTACATTTGC+TGG 0.304653 3_3:+79901119 Msa0476140:CDS
AGTATACTTGTTGGCCTAAC+AGG 0.305613 3_3:-79900350 None:intergenic
TGGCTGTTGGTAACCTCATC+AGG 0.328407 3_3:-79900136 None:intergenic
TATAAATTAACCAATGTGTT+TGG 0.334141 3_3:-79902109 None:intergenic
GTTGGAGCCACGGGGACTTT+GGG 0.335711 3_3:+79900377 Msa0476140:CDS
CACTTCTCACTATGTACATT+TGG 0.339648 3_3:-79902173 None:intergenic
TTATTCTTAAATACGCTTGC+CGG 0.343333 3_3:+79902024 Msa0476140:three_prime_UTR
CTTTGGGAAGGCAGATTGTT+CGG 0.350602 3_3:+79900393 Msa0476140:CDS
AGGAAGAAGGATTATTAGAG+TGG 0.354956 3_3:+79900250 Msa0476140:CDS
CGGGATGTTTGTCGCAGTTA+TGG 0.356296 3_3:-79900688 None:intergenic
TACATTAGAGAAGTATTTGC+AGG 0.361917 3_3:+79901878 Msa0476140:CDS
ACTATTCCTGCTACATTAGT+TGG 0.362432 3_3:+79900533 Msa0476140:CDS
TTCTTACGTGGGCTTACAAT+TGG 0.375224 3_3:+79902065 Msa0476140:three_prime_UTR
GGTTGGAGCCACGGGGACTT+TGG 0.381360 3_3:+79900376 Msa0476140:CDS
GCCTATCAAAACAGTTGATT+GGG 0.393639 3_3:+79900598 Msa0476140:CDS
ACATTGTGTGAGAGGCTTGC+GGG 0.395591 3_3:+79901173 Msa0476140:CDS
AGCCTATCAAAACAGTTGAT+TGG 0.402139 3_3:+79900597 Msa0476140:CDS
CACACAATGTAATCACCTCT+TGG 0.411787 3_3:-79901160 None:intergenic
AGGATACGACGTCCGGTGTC+TGG 0.418347 3_3:+79900430 Msa0476140:CDS
ATACTTGTGGTTGGAGCCAC+GGG 0.432518 3_3:+79900368 Msa0476140:CDS
TCAGAGAGGGCAGTGAATCT+TGG 0.438962 3_3:+79900317 Msa0476140:CDS
CACATTGTCATCCGTTTATG+TGG 0.441513 3_3:+79900773 Msa0476140:CDS
AAATATCTGATTGTTTCGAC+TGG 0.443973 3_3:-79901944 None:intergenic
CGAGAATAGGAACAGCATAC+TGG 0.446584 3_3:-79900894 None:intergenic
ACTGTTATTGACTGCGCCAC+TGG 0.449162 3_3:+79900563 Msa0476140:CDS
ATCTCCATGAGTGGGACCTC+GGG 0.452186 3_3:-79900707 None:intergenic
CTTGCATGAAACCACATAAA+CGG 0.459989 3_3:-79900784 None:intergenic
ATCCGTTGATGAAAGATAAG+AGG 0.462994 3_3:+79899973 Msa0476140:five_prime_UTR
GATCAGGAGGAGTATTGGAT+TGG 0.463602 3_3:+79900037 Msa0476140:five_prime_UTR
CTGTAGTTACATTAGCATCT+TGG 0.467915 3_3:-79901196 None:intergenic
TTGGACCAGGGACACCTGTT+AGG 0.469779 3_3:+79900336 Msa0476140:CDS
TGCATACGAGGTAATGTTGT+GGG 0.476275 3_3:+79901990 Msa0476140:three_prime_UTR
TATTTATGAATTGTGTCAGT+TGG 0.477239 3_3:+79902323 Msa0476140:three_prime_UTR
GTTGGCCTAACAGGTGTCCC+TGG 0.478236 3_3:-79900341 None:intergenic
CATGTAAGCGATTCTGGTGG+GGG 0.487749 3_3:-79900944 None:intergenic
ATTCAATGTGCTAAAGCAAT+GGG 0.487829 3_3:+79900638 Msa0476140:CDS
AAGTCAGCTGGAGCAGGCCT+CGG 0.491663 3_3:-79900458 None:intergenic
ATAATGATCAGGAGGAGTAT+TGG 0.492930 3_3:+79900032 Msa0476140:five_prime_UTR
GACGTGGCAAAATAATGATC+AGG 0.496951 3_3:+79900021 Msa0476140:five_prime_UTR
CTGACGAGTGAGTCTTAAAA+CGG 0.500828 3_3:-79901228 None:intergenic
GAACATATTGAAGAAGTTGA+AGG 0.506295 3_3:+79901911 Msa0476140:CDS
CGAAGGAAGTCAGCTGGAGC+AGG 0.509309 3_3:-79900464 None:intergenic
TATTCAATGTGCTAAAGCAA+TGG 0.515599 3_3:+79900637 Msa0476140:CDS
CCCCACCAGAATCGCTTACA+TGG 0.515621 3_3:+79900945 Msa0476140:CDS
ACGACGTCCGGTGTCTGGTA+AGG 0.516950 3_3:+79900435 Msa0476140:CDS
CCATGTAAGCGATTCTGGTG+GGG 0.516968 3_3:-79900945 None:intergenic
GCAGATTGTTCGGAGGGCAC+TGG 0.517013 3_3:+79900403 Msa0476140:CDS
TCCGGTGTCTGGTAAGGCCG+AGG 0.517171 3_3:+79900441 Msa0476140:CDS
TGAACTCCAACTAATGTAGC+AGG 0.522361 3_3:-79900539 None:intergenic
GGAAGAAGGATTATTAGAGT+GGG 0.524254 3_3:+79900251 Msa0476140:CDS
GATCTCCATGAGTGGGACCT+CGG 0.525916 3_3:-79900708 None:intergenic
CCAACCACAAGTATACTTGT+TGG 0.527488 3_3:-79900359 None:intergenic
AAATGATGTTGCTGACAGAT+TGG 0.529217 3_3:+79901274 Msa0476140:CDS
GCTGACTTCCTTCGTGATTG+GGG 0.529696 3_3:+79900473 Msa0476140:CDS
ATGTTTGTCGCAGTTATGGA+TGG 0.531609 3_3:-79900684 None:intergenic
GAGCCACGGGGACTTTGGGA+AGG 0.531810 3_3:+79900381 Msa0476140:CDS
TGATGACTAGGATAAAGAAC+AGG 0.532406 3_3:-79900197 None:intergenic
ACACAATGTAATCACCTCTT+GGG 0.536741 3_3:-79901159 None:intergenic
CAATCACGAAGGAAGTCAGC+TGG 0.537462 3_3:-79900470 None:intergenic
TATACTTGTGGTTGGAGCCA+CGG 0.537842 3_3:+79900367 Msa0476140:CDS
AGGTTGTATGTCTCCGCCAT+TGG 0.538477 3_3:-79901828 None:intergenic
AATGTAGCAGGAATAGTCTC+AGG 0.539300 3_3:-79900527 None:intergenic
ACATCCCGAGGTCCCACTCA+TGG 0.539781 3_3:+79900703 Msa0476140:CDS
GTCTTCGTCACCACCCTACC+AGG 0.543120 3_3:-79900161 None:intergenic
TCCATGTAAGCGATTCTGGT+GGG 0.555397 3_3:-79900946 None:intergenic
GACACAATTCATAAATACTT+AGG 0.556487 3_3:-79902317 None:intergenic
CCCCTCTTATCTTTCATCAA+CGG 0.558108 3_3:-79899975 None:intergenic
GTGAGTCTTAAAACGGAGAC+AGG 0.566202 3_3:-79901221 None:intergenic
AGGCTCTTCAGGACGGCCAG+TGG 0.567494 3_3:-79900579 None:intergenic
TCCGTTGATGAAAGATAAGA+GGG 0.567847 3_3:+79899974 Msa0476140:five_prime_UTR
GCGGAGACATACAACCTACT+TGG 0.567860 3_3:+79901834 Msa0476140:CDS
ACCAACAGCCACACCTGGTA+GGG 0.570641 3_3:+79900148 Msa0476140:CDS
AATATCTGATTGTTTCGACT+GGG 0.571429 3_3:-79901943 None:intergenic
TACATTGTGTGAGAGGCTTG+CGG 0.572162 3_3:+79901172 Msa0476140:CDS
ACCCTACCAGGTGTGGCTGT+TGG 0.574945 3_3:-79900149 None:intergenic
AATCGCTTACATGGATACTC+AGG 0.576431 3_3:+79900954 Msa0476140:CDS
CATTTGCTGGTCCTCGTGCG+TGG 0.576997 3_3:+79901132 Msa0476140:CDS
GGGAAGGCAGATTGTTCGGA+GGG 0.578906 3_3:+79900397 Msa0476140:CDS
AGGGCAGTGAATCTTGGACC+AGG 0.579063 3_3:+79900323 Msa0476140:CDS
AGGTGATTACATTGTGTGAG+AGG 0.579608 3_3:+79901165 Msa0476140:CDS
AAGGTGGAAGAAGAGGAAGA+AGG 0.582412 3_3:+79900237 Msa0476140:CDS
CTTTGGTATCGACACCAAGT+AGG 0.582966 3_3:-79901848 None:intergenic
TGGACGAAGGATACGACGTC+CGG 0.585255 3_3:+79900423 Msa0476140:CDS
AAAGATAAGAGGGGTGCGGT+AGG 0.586869 3_3:+79899984 Msa0476140:five_prime_UTR
CGTCACCACCCTACCAGGTG+TGG 0.587901 3_3:-79900156 None:intergenic
AACTCAACAAAATGATGACT+AGG 0.598330 3_3:-79900209 None:intergenic
TGAAAATGGCGACCCTGATG+AGG 0.599647 3_3:+79900123 Msa0476140:CDS
ATCAAAACAGTTGATTGGGA+AGG 0.599943 3_3:+79900602 Msa0476140:CDS
AGGTTACCAACAGCCACACC+TGG 0.599991 3_3:+79900143 Msa0476140:CDS
CCAACAAGTATACTTGTGGT+TGG 0.608034 3_3:+79900359 Msa0476140:CDS
TTGCATACGAGGTAATGTTG+TGG 0.612997 3_3:+79901989 Msa0476140:three_prime_UTR
AACAGCCACACCTGGTAGGG+TGG 0.616669 3_3:+79900151 Msa0476140:CDS
TTGTATTCATCCAAACACAT+TGG 0.619267 3_3:+79902099 Msa0476140:three_prime_UTR
TACCAACAGCCACACCTGGT+AGG 0.624838 3_3:+79900147 Msa0476140:CDS
ATCCATGTAAGCGATTCTGG+TGG 0.627734 3_3:-79900947 None:intergenic
CAATACTTGATCTCCATGAG+TGG 0.630169 3_3:-79900716 None:intergenic
TGGGAAGGCAGATTGTTCGG+AGG 0.630372 3_3:+79900396 Msa0476140:CDS
GTTCGGAGGGCACTGGACGA+AGG 0.631129 3_3:+79900410 Msa0476140:CDS
TGTGATTGAGTCCAGAATCA+CGG 0.632628 3_3:-79900754 None:intergenic
TAGGCCAACAAGTATACTTG+TGG 0.636061 3_3:+79900355 Msa0476140:CDS
GGGCAGTGAATCTTGGACCA+GGG 0.636252 3_3:+79900324 Msa0476140:CDS
GGCTGTTGGTAACCTCATCA+GGG 0.639067 3_3:-79900135 None:intergenic
GATGAAAGATAAGAGGGGTG+CGG 0.639836 3_3:+79899980 Msa0476140:five_prime_UTR
GGATTGGATTGAATGAACGA+AGG 0.642823 3_3:+79900053 Msa0476140:five_prime_UTR
ATGATTTGTAATTGCATACG+AGG 0.645440 3_3:+79901978 Msa0476140:three_prime_UTR
TAGCAATAGCAATTCAGAGA+GGG 0.647837 3_3:+79900304 Msa0476140:CDS
GCCTCGGCCTTACCAGACAC+CGG 0.648299 3_3:-79900442 None:intergenic
AATACTTGATCTCCATGAGT+GGG 0.653716 3_3:-79900715 None:intergenic
GGTGGTGACGAAGACGAGAG+AGG 0.657505 3_3:+79900169 Msa0476140:CDS
GTGGCAAAATAATGATCAGG+AGG 0.665461 3_3:+79900024 Msa0476140:five_prime_UTR
CTGCCTTCCCAAAGTCCCCG+TGG 0.669955 3_3:-79900384 None:intergenic
TCGTGCGTGGACTACCCAAG+AGG 0.692160 3_3:+79901145 Msa0476140:CDS
GGTAGCAGTAAAAGTAGACG+TGG 0.693126 3_3:+79900005 Msa0476140:five_prime_UTR
TAACTGCGACAAACATCCCG+AGG 0.701969 3_3:+79900691 Msa0476140:CDS
TCTTGGGTAGTCCACGCACG+AGG 0.707865 3_3:-79901143 None:intergenic
CAGTTGCTCCCCAATCACGA+AGG 0.720142 3_3:-79900481 None:intergenic
ATAGCAATAGCAATTCAGAG+AGG 0.747554 3_3:+79900303 Msa0476140:CDS
TACTTGTGGTTGGAGCCACG+GGG 0.774798 3_3:+79900369 Msa0476140:CDS
CCGTTGATGAAAGATAAGAG+GGG 0.799666 3_3:+79899975 Msa0476140:five_prime_UTR
GATTGAGTCCAGAATCACGG+AGG 0.804340 3_3:-79900751 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTCTTTCATTTTAA+TGG + chr3_3:79901731-79901750 Msa0476140:intron 15.0%
!! AATAAAAAAACAATATACAC+CGG - chr3_3:79902046-79902065 None:intergenic 15.0%
!! TTATTTCCGAAAAATGAAAA+TGG + chr3_3:79900109-79900128 Msa0476140:exon 20.0%
!!! ATTGATTTTTTCATTTCGTA+AGG - chr3_3:79901099-79901118 None:intergenic 20.0%
!! TTACGAAATGAAAAAATCAA+TGG + chr3_3:79901098-79901117 Msa0476140:CDS 20.0%
!! CAACAAGTATTAATGAATTT+AGG - chr3_3:79901334-79901353 None:intergenic 20.0%
!!! TCAACTATTTTTTGTTACAT+TGG + chr3_3:79901410-79901429 Msa0476140:intron 20.0%
!! AGCAATCTAAAAATAAGTAA+GGG - chr3_3:79901436-79901455 None:intergenic 20.0%
!! AAGCAATCTAAAAATAAGTA+AGG - chr3_3:79901437-79901456 None:intergenic 20.0%
!!! TTATTTTTAGATTGCTTGAA+TGG + chr3_3:79901440-79901459 Msa0476140:intron 20.0%
!! CTCTAATGTAATTATATCTT+TGG - chr3_3:79901868-79901887 None:intergenic 20.0%
!!! TTGTTTTTTTATTTCTTACG+TGG + chr3_3:79902053-79902072 Msa0476140:three_prime_UTR 20.0%
!!! TGTTTTTTTATTTCTTACGT+GGG + chr3_3:79902054-79902073 Msa0476140:three_prime_UTR 20.0%
!! TATAAATTAACCAATGTGTT+TGG - chr3_3:79902112-79902131 None:intergenic 20.0%
! ATGAATGAAGTGATTGATTA+AGG - chr3_3:79901028-79901047 None:intergenic 25.0%
!! TTCATTAATACTTGTTGCAT+TGG + chr3_3:79901337-79901356 Msa0476140:intron 25.0%
! CATACAAAAAAAGAAGAAGA+AGG - chr3_3:79901377-79901396 None:intergenic 25.0%
!!! TATCAAATAATAGTGTTGGT+CGG - chr3_3:79901656-79901675 None:intergenic 25.0%
! GATGTATCAAATAATAGTGT+TGG - chr3_3:79901660-79901679 None:intergenic 25.0%
! GAGAAAATATTATATGCACT+AGG - chr3_3:79901720-79901739 None:intergenic 25.0%
!!! TTTCTCTTTCATTTTAATGG+TGG + chr3_3:79901734-79901753 Msa0476140:intron 25.0%
! GACACAATTCATAAATACTT+AGG - chr3_3:79902320-79902339 None:intergenic 25.0%
! TATTTATGAATTGTGTCAGT+TGG + chr3_3:79902323-79902342 Msa0476140:three_prime_UTR 25.0%
AACTCAACAAAATGATGACT+AGG - chr3_3:79900212-79900231 None:intergenic 30.0%
! CATTTTGTTGAGTTTTGCAA+AGG + chr3_3:79900218-79900237 Msa0476140:CDS 30.0%
TATTCAATGTGCTAAAGCAA+TGG + chr3_3:79900637-79900656 Msa0476140:CDS 30.0%
ATTCAATGTGCTAAAGCAAT+GGG + chr3_3:79900638-79900657 Msa0476140:CDS 30.0%
ACAATTCATAATTCCAATGC+AGG + chr3_3:79900861-79900880 Msa0476140:intron 30.0%
CAATTCATAATTCCAATGCA+GGG + chr3_3:79900862-79900881 Msa0476140:intron 30.0%
! ACAGATTTTTCTTCGAGAAT+AGG - chr3_3:79900910-79900929 None:intergenic 30.0%
TTCTCGAAGAAAAATCTGTT+TGG + chr3_3:79900911-79900930 Msa0476140:CDS 30.0%
TCTCGAAGAAAAATCTGTTT+GGG + chr3_3:79900912-79900931 Msa0476140:CDS 30.0%
AAAAAGAAGAAGAAGGACTT+GGG - chr3_3:79901370-79901389 None:intergenic 30.0%
AAAAAAGAAGAAGAAGGACT+TGG - chr3_3:79901371-79901390 None:intergenic 30.0%
TGCATTACTACATTTCCATT+GGG + chr3_3:79901510-79901529 Msa0476140:intron 30.0%
GGAATAAACCTGTAAGAATA+GGG - chr3_3:79901622-79901641 None:intergenic 30.0%
TGGAATAAACCTGTAAGAAT+AGG - chr3_3:79901623-79901642 None:intergenic 30.0%
ACAGGTTTATTCCATTCTAT+TGG + chr3_3:79901629-79901648 Msa0476140:intron 30.0%
CATGCCTATAGTTGATTATA+CGG + chr3_3:79901762-79901781 Msa0476140:intron 30.0%
ATGCCTATAGTTGATTATAC+GGG + chr3_3:79901763-79901782 Msa0476140:intron 30.0%
TTTCCCGTATAATCAACTAT+AGG - chr3_3:79901769-79901788 None:intergenic 30.0%
ATTATACGGGAAATATTTGC+AGG + chr3_3:79901776-79901795 Msa0476140:intron 30.0%
!! TACATTAGAGAAGTATTTGC+AGG + chr3_3:79901878-79901897 Msa0476140:CDS 30.0%
GAACATATTGAAGAAGTTGA+AGG + chr3_3:79901911-79901930 Msa0476140:CDS 30.0%
AATATCTGATTGTTTCGACT+GGG - chr3_3:79901946-79901965 None:intergenic 30.0%
AAATATCTGATTGTTTCGAC+TGG - chr3_3:79901947-79901966 None:intergenic 30.0%
! ATGATTTGTAATTGCATACG+AGG + chr3_3:79901978-79901997 Msa0476140:three_prime_UTR 30.0%
TTATTCTTAAATACGCTTGC+CGG + chr3_3:79902024-79902043 Msa0476140:three_prime_UTR 30.0%
TTGTATTCATCCAAACACAT+TGG + chr3_3:79902099-79902118 Msa0476140:three_prime_UTR 30.0%
! ATCCGTTGATGAAAGATAAG+AGG + chr3_3:79899973-79899992 Msa0476140:five_prime_UTR 35.0%
! TCCGTTGATGAAAGATAAGA+GGG + chr3_3:79899974-79899993 Msa0476140:five_prime_UTR 35.0%
! ATAATGATCAGGAGGAGTAT+TGG + chr3_3:79900032-79900051 Msa0476140:five_prime_UTR 35.0%
TGATGACTAGGATAAAGAAC+AGG - chr3_3:79900200-79900219 None:intergenic 35.0%
! TTTGTTGAGTTTTGCAAAGG+TGG + chr3_3:79900221-79900240 Msa0476140:CDS 35.0%
AGGAAGAAGGATTATTAGAG+TGG + chr3_3:79900250-79900269 Msa0476140:CDS 35.0%
GGAAGAAGGATTATTAGAGT+GGG + chr3_3:79900251-79900270 Msa0476140:CDS 35.0%
ATAGCAATAGCAATTCAGAG+AGG + chr3_3:79900303-79900322 Msa0476140:CDS 35.0%
TAGCAATAGCAATTCAGAGA+GGG + chr3_3:79900304-79900323 Msa0476140:CDS 35.0%
ACTATTCCTGCTACATTAGT+TGG + chr3_3:79900533-79900552 Msa0476140:CDS 35.0%
AGCCTATCAAAACAGTTGAT+TGG + chr3_3:79900597-79900616 Msa0476140:CDS 35.0%
GCCTATCAAAACAGTTGATT+GGG + chr3_3:79900598-79900617 Msa0476140:CDS 35.0%
!!! TCCCAATCAACTGTTTTGAT+AGG - chr3_3:79900602-79900621 None:intergenic 35.0%
ATCAAAACAGTTGATTGGGA+AGG + chr3_3:79900602-79900621 Msa0476140:CDS 35.0%
AATACTTGATCTCCATGAGT+GGG - chr3_3:79900718-79900737 None:intergenic 35.0%
CTTGCATGAAACCACATAAA+CGG - chr3_3:79900787-79900806 None:intergenic 35.0%
CTCGAAGAAAAATCTGTTTG+GGG + chr3_3:79900913-79900932 Msa0476140:CDS 35.0%
GGTAAACTTCTTACATTTGC+TGG + chr3_3:79901119-79901138 Msa0476140:CDS 35.0%
ACACAATGTAATCACCTCTT+GGG - chr3_3:79901162-79901181 None:intergenic 35.0%
CTGTAGTTACATTAGCATCT+TGG - chr3_3:79901199-79901218 None:intergenic 35.0%
ATTTGTCCACTCAAAAAAGC+GGG - chr3_3:79901258-79901277 None:intergenic 35.0%
CATTTGTCCACTCAAAAAAG+CGG - chr3_3:79901259-79901278 None:intergenic 35.0%
AAATGATGTTGCTGACAGAT+TGG + chr3_3:79901274-79901293 Msa0476140:CDS 35.0%
CTGCATTACTACATTTCCAT+TGG + chr3_3:79901509-79901528 Msa0476140:intron 35.0%
GCATTACTACATTTCCATTG+GGG + chr3_3:79901511-79901530 Msa0476140:intron 35.0%
! CTGTAAGAATAGGGTTTGTT+TGG - chr3_3:79901613-79901632 None:intergenic 35.0%
CAAACAAACCCTATTCTTAC+AGG + chr3_3:79901611-79901630 Msa0476140:intron 35.0%
ATATGCACTAGGAATCTGTT+TGG - chr3_3:79901709-79901728 None:intergenic 35.0%
CACTTCTCACTATGTACATT+TGG - chr3_3:79902176-79902195 None:intergenic 35.0%
CCCCTCTTATCTTTCATCAA+CGG - chr3_3:79899978-79899997 None:intergenic 40.0%
! CCGTTGATGAAAGATAAGAG+GGG + chr3_3:79899975-79899994 Msa0476140:five_prime_UTR 40.0%
GACGTGGCAAAATAATGATC+AGG + chr3_3:79900021-79900040 Msa0476140:five_prime_UTR 40.0%
GTGGCAAAATAATGATCAGG+AGG + chr3_3:79900024-79900043 Msa0476140:five_prime_UTR 40.0%
GGATTGGATTGAATGAACGA+AGG + chr3_3:79900053-79900072 Msa0476140:five_prime_UTR 40.0%
!! GGGTCGCCATTTTCATTTTT+CGG - chr3_3:79900118-79900137 None:intergenic 40.0%
! TTTTGCAAAGGTGGAAGAAG+AGG + chr3_3:79900230-79900249 Msa0476140:CDS 40.0%
! AGTATACTTGTTGGCCTAAC+AGG - chr3_3:79900353-79900372 None:intergenic 40.0%
TAGGCCAACAAGTATACTTG+TGG + chr3_3:79900355-79900374 Msa0476140:CDS 40.0%
CCAACCACAAGTATACTTGT+TGG - chr3_3:79900362-79900381 None:intergenic 40.0%
CCAACAAGTATACTTGTGGT+TGG + chr3_3:79900359-79900378 Msa0476140:CDS 40.0%
AATGTAGCAGGAATAGTCTC+AGG - chr3_3:79900530-79900549 None:intergenic 40.0%
TGAACTCCAACTAATGTAGC+AGG - chr3_3:79900542-79900561 None:intergenic 40.0%
! TTTTGATAGGCTCTTCAGGA+CGG - chr3_3:79900589-79900608 None:intergenic 40.0%
!!! ACTGTTTTGATAGGCTCTTC+AGG - chr3_3:79900593-79900612 None:intergenic 40.0%
ATGTTTGTCGCAGTTATGGA+TGG - chr3_3:79900687-79900706 None:intergenic 40.0%
CAATACTTGATCTCCATGAG+TGG - chr3_3:79900719-79900738 None:intergenic 40.0%
TGTGATTGAGTCCAGAATCA+CGG - chr3_3:79900757-79900776 None:intergenic 40.0%
CACATTGTCATCCGTTTATG+TGG + chr3_3:79900773-79900792 Msa0476140:CDS 40.0%
! ATTCCAATGCAGGGTCTTAT+TGG + chr3_3:79900871-79900890 Msa0476140:intron 40.0%
AGTATCCATGTAAGCGATTC+TGG - chr3_3:79900953-79900972 None:intergenic 40.0%
AATCGCTTACATGGATACTC+AGG + chr3_3:79900954-79900973 Msa0476140:CDS 40.0%
CTATATCCTAAAAGCAGCAG+AGG - chr3_3:79901058-79901077 None:intergenic 40.0%
CACACAATGTAATCACCTCT+TGG - chr3_3:79901163-79901182 None:intergenic 40.0%
AGGTGATTACATTGTGTGAG+AGG + chr3_3:79901165-79901184 Msa0476140:CDS 40.0%
CTGACGAGTGAGTCTTAAAA+CGG - chr3_3:79901231-79901250 None:intergenic 40.0%
!!! AGTTAACCCGCTTTTTTGAG+TGG + chr3_3:79901249-79901268 Msa0476140:CDS 40.0%
! TGACAGATTGGCATTTTCAG+AGG + chr3_3:79901286-79901305 Msa0476140:CDS 40.0%
! ACTACTAGAGCAGCTGATTT+GGG - chr3_3:79901476-79901495 None:intergenic 40.0%
TGGATTTGGGTAAAAGCCAA+TGG - chr3_3:79901545-79901564 None:intergenic 40.0%
! CACAGTTTTCTCTGTTCCAA+TGG + chr3_3:79901812-79901831 Msa0476140:CDS 40.0%
! AGTTTTCTCTGTTCCAATGG+CGG + chr3_3:79901815-79901834 Msa0476140:CDS 40.0%
TTGCATACGAGGTAATGTTG+TGG + chr3_3:79901989-79902008 Msa0476140:three_prime_UTR 40.0%
TGCATACGAGGTAATGTTGT+GGG + chr3_3:79901990-79902009 Msa0476140:three_prime_UTR 40.0%
TTCTTACGTGGGCTTACAAT+TGG + chr3_3:79902065-79902084 Msa0476140:three_prime_UTR 40.0%
! GTCTTTTAAGCATGCGATAC+AGG - chr3_3:79902298-79902317 None:intergenic 40.0%
GATGAAAGATAAGAGGGGTG+CGG + chr3_3:79899980-79899999 Msa0476140:five_prime_UTR 45.0%
GGTAGCAGTAAAAGTAGACG+TGG + chr3_3:79900005-79900024 Msa0476140:five_prime_UTR 45.0%
!! GATCAGGAGGAGTATTGGAT+TGG + chr3_3:79900037-79900056 Msa0476140:five_prime_UTR 45.0%
AAGGTGGAAGAAGAGGAAGA+AGG + chr3_3:79900237-79900256 Msa0476140:CDS 45.0%
TATACTTGTGGTTGGAGCCA+CGG + chr3_3:79900367-79900386 Msa0476140:CDS 45.0%
! CTTTGGGAAGGCAGATTGTT+CGG + chr3_3:79900393-79900412 Msa0476140:CDS 45.0%
! AGCTGACTTCCTTCGTGATT+GGG + chr3_3:79900472-79900491 Msa0476140:CDS 45.0%
CGAGAATAGGAACAGCATAC+TGG - chr3_3:79900897-79900916 None:intergenic 45.0%
TCCATGTAAGCGATTCTGGT+GGG - chr3_3:79900949-79900968 None:intergenic 45.0%
ATCCATGTAAGCGATTCTGG+TGG - chr3_3:79900950-79900969 None:intergenic 45.0%
TACATTGTGTGAGAGGCTTG+CGG + chr3_3:79901172-79901191 Msa0476140:CDS 45.0%
GTGAGTCTTAAAACGGAGAC+AGG - chr3_3:79901224-79901243 None:intergenic 45.0%
GACTACTAGAGCAGCTGATT+TGG - chr3_3:79901477-79901496 None:intergenic 45.0%
GGGTAAAAGCCAATGGCAAT+AGG - chr3_3:79901538-79901557 None:intergenic 45.0%
! CCATCGACATGAGTGGATTT+GGG - chr3_3:79901558-79901577 None:intergenic 45.0%
! TCCATCGACATGAGTGGATT+TGG - chr3_3:79901559-79901578 None:intergenic 45.0%
TTGATGTCCATCGACATGAG+TGG - chr3_3:79901565-79901584 None:intergenic 45.0%
TGTTGGTCGGACCAATAGAA+TGG - chr3_3:79901643-79901662 None:intergenic 45.0%
!! CTTTGGTATCGACACCAAGT+AGG - chr3_3:79901851-79901870 None:intergenic 45.0%
!!! ATAAATAAATTTAAGATTAT+TGG + chr3_3:79899949-79899968 Msa0476140:five_prime_UTR 5.0%
! AAAGATAAGAGGGGTGCGGT+AGG + chr3_3:79899984-79900003 Msa0476140:five_prime_UTR 50.0%
TGAAAATGGCGACCCTGATG+AGG + chr3_3:79900123-79900142 Msa0476140:CDS 50.0%
!! GGCTGTTGGTAACCTCATCA+GGG - chr3_3:79900138-79900157 None:intergenic 50.0%
!! TGGCTGTTGGTAACCTCATC+AGG - chr3_3:79900139-79900158 None:intergenic 50.0%
TCAGAGAGGGCAGTGAATCT+TGG + chr3_3:79900317-79900336 Msa0476140:CDS 50.0%
ATACTTGTGGTTGGAGCCAC+GGG + chr3_3:79900368-79900387 Msa0476140:CDS 50.0%
CAATCACGAAGGAAGTCAGC+TGG - chr3_3:79900473-79900492 None:intergenic 50.0%
! CAGCTGACTTCCTTCGTGAT+TGG + chr3_3:79900471-79900490 Msa0476140:CDS 50.0%
! GCTGACTTCCTTCGTGATTG+GGG + chr3_3:79900473-79900492 Msa0476140:CDS 50.0%
! ACTGTTATTGACTGCGCCAC+TGG + chr3_3:79900563-79900582 Msa0476140:CDS 50.0%
CGGGATGTTTGTCGCAGTTA+TGG - chr3_3:79900691-79900710 None:intergenic 50.0%
TAACTGCGACAAACATCCCG+AGG + chr3_3:79900691-79900710 Msa0476140:CDS 50.0%
GAGAACTTCCTCCGTGATTC+TGG + chr3_3:79900743-79900762 Msa0476140:CDS 50.0%
GATTGAGTCCAGAATCACGG+AGG - chr3_3:79900754-79900773 None:intergenic 50.0%
TGGCCAATAAGACCCTGCAT+TGG - chr3_3:79900877-79900896 None:intergenic 50.0%
CATGTAAGCGATTCTGGTGG+GGG - chr3_3:79900947-79900966 None:intergenic 50.0%
CCATGTAAGCGATTCTGGTG+GGG - chr3_3:79900948-79900967 None:intergenic 50.0%
!!! TGTCTGCCTCTGCTGCTTTT+AGG + chr3_3:79901049-79901068 Msa0476140:intron 50.0%
ACATTGTGTGAGAGGCTTGC+GGG + chr3_3:79901173-79901192 Msa0476140:CDS 50.0%
CAATGGCAATAGGTCCCCAA+TGG - chr3_3:79901528-79901547 None:intergenic 50.0%
CATTGGGGACCTATTGCCAT+TGG + chr3_3:79901526-79901545 Msa0476140:intron 50.0%
CCCAAATCCACTCATGTCGA+TGG + chr3_3:79901555-79901574 Msa0476140:intron 50.0%
AGGTTGTATGTCTCCGCCAT+TGG - chr3_3:79901831-79901850 None:intergenic 50.0%
GCGGAGACATACAACCTACT+TGG + chr3_3:79901834-79901853 Msa0476140:CDS 50.0%
AGGTTACCAACAGCCACACC+TGG + chr3_3:79900143-79900162 Msa0476140:CDS 55.0%
TACCAACAGCCACACCTGGT+AGG + chr3_3:79900147-79900166 Msa0476140:CDS 55.0%
ACCAACAGCCACACCTGGTA+GGG + chr3_3:79900148-79900167 Msa0476140:CDS 55.0%
AGGGCAGTGAATCTTGGACC+AGG + chr3_3:79900323-79900342 Msa0476140:CDS 55.0%
GGGCAGTGAATCTTGGACCA+GGG + chr3_3:79900324-79900343 Msa0476140:CDS 55.0%
TTGGACCAGGGACACCTGTT+AGG + chr3_3:79900336-79900355 Msa0476140:CDS 55.0%
TACTTGTGGTTGGAGCCACG+GGG + chr3_3:79900369-79900388 Msa0476140:CDS 55.0%
TGGGAAGGCAGATTGTTCGG+AGG + chr3_3:79900396-79900415 Msa0476140:CDS 55.0%
GGGAAGGCAGATTGTTCGGA+GGG + chr3_3:79900397-79900416 Msa0476140:CDS 55.0%
TGGACGAAGGATACGACGTC+CGG + chr3_3:79900423-79900442 Msa0476140:CDS 55.0%
CAGTTGCTCCCCAATCACGA+AGG - chr3_3:79900484-79900503 None:intergenic 55.0%
ATCTCCATGAGTGGGACCTC+GGG - chr3_3:79900710-79900729 None:intergenic 55.0%
GATCTCCATGAGTGGGACCT+CGG - chr3_3:79900711-79900730 None:intergenic 55.0%
CCCCACCAGAATCGCTTACA+TGG + chr3_3:79900945-79900964 Msa0476140:CDS 55.0%
ACCCTACCAGGTGTGGCTGT+TGG - chr3_3:79900152-79900171 None:intergenic 60.0%
AACAGCCACACCTGGTAGGG+TGG + chr3_3:79900151-79900170 Msa0476140:CDS 60.0%
GTCTTCGTCACCACCCTACC+AGG - chr3_3:79900164-79900183 None:intergenic 60.0%
! GGTGGTGACGAAGACGAGAG+AGG + chr3_3:79900169-79900188 Msa0476140:CDS 60.0%
! GTTGGCCTAACAGGTGTCCC+TGG - chr3_3:79900344-79900363 None:intergenic 60.0%
GTTGGAGCCACGGGGACTTT+GGG + chr3_3:79900377-79900396 Msa0476140:CDS 60.0%
! GCAGATTGTTCGGAGGGCAC+TGG + chr3_3:79900403-79900422 Msa0476140:CDS 60.0%
AGGATACGACGTCCGGTGTC+TGG + chr3_3:79900430-79900449 Msa0476140:CDS 60.0%
ACGACGTCCGGTGTCTGGTA+AGG + chr3_3:79900435-79900454 Msa0476140:CDS 60.0%
AAGTCAGCTGGAGCAGGCCT+CGG - chr3_3:79900461-79900480 None:intergenic 60.0%
CGAAGGAAGTCAGCTGGAGC+AGG - chr3_3:79900467-79900486 None:intergenic 60.0%
ACATCCCGAGGTCCCACTCA+TGG + chr3_3:79900703-79900722 Msa0476140:CDS 60.0%
! CATTTGCTGGTCCTCGTGCG+TGG + chr3_3:79901132-79901151 Msa0476140:CDS 60.0%
TCTTGGGTAGTCCACGCACG+AGG - chr3_3:79901146-79901165 None:intergenic 60.0%
! TCGTGCGTGGACTACCCAAG+AGG + chr3_3:79901145-79901164 Msa0476140:CDS 60.0%
CGTCACCACCCTACCAGGTG+TGG - chr3_3:79900159-79900178 None:intergenic 65.0%
GGTTGGAGCCACGGGGACTT+TGG + chr3_3:79900376-79900395 Msa0476140:CDS 65.0%
! GAGCCACGGGGACTTTGGGA+AGG + chr3_3:79900381-79900400 Msa0476140:CDS 65.0%
CTGCCTTCCCAAAGTCCCCG+TGG - chr3_3:79900387-79900406 None:intergenic 65.0%
!! GTTCGGAGGGCACTGGACGA+AGG + chr3_3:79900410-79900429 Msa0476140:CDS 65.0%
TCCGGTGTCTGGTAAGGCCG+AGG + chr3_3:79900441-79900460 Msa0476140:CDS 65.0%
GCCTCGGCCTTACCAGACAC+CGG - chr3_3:79900445-79900464 None:intergenic 65.0%
AGGCTCTTCAGGACGGCCAG+TGG - chr3_3:79900582-79900601 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 79899942 79902409 79899942 ID=Msa0476140;Name=Msa0476140
chr3_3 mRNA 79899942 79902409 79899942 ID=Msa0476140-mRNA-1;Parent=Msa0476140;Name=Msa0476140-mRNA-1;_AED=0.04;_eAED=0.04;_QI=180|1|1|1|1|1|4|435|396
chr3_3 exon 79899942 79900805 79899942 ID=Msa0476140-mRNA-1:exon:21709;Parent=Msa0476140-mRNA-1
chr3_3 exon 79900883 79900975 79900883 ID=Msa0476140-mRNA-1:exon:21710;Parent=Msa0476140-mRNA-1
chr3_3 exon 79901071 79901307 79901071 ID=Msa0476140-mRNA-1:exon:21711;Parent=Msa0476140-mRNA-1
chr3_3 exon 79901798 79902409 79901798 ID=Msa0476140-mRNA-1:exon:21712;Parent=Msa0476140-mRNA-1
chr3_3 five_prime_UTR 79899942 79900121 79899942 ID=Msa0476140-mRNA-1:five_prime_utr;Parent=Msa0476140-mRNA-1
chr3_3 CDS 79900122 79900805 79900122 ID=Msa0476140-mRNA-1:cds;Parent=Msa0476140-mRNA-1
chr3_3 CDS 79900883 79900975 79900883 ID=Msa0476140-mRNA-1:cds;Parent=Msa0476140-mRNA-1
chr3_3 CDS 79901071 79901307 79901071 ID=Msa0476140-mRNA-1:cds;Parent=Msa0476140-mRNA-1
chr3_3 CDS 79901798 79901974 79901798 ID=Msa0476140-mRNA-1:cds;Parent=Msa0476140-mRNA-1
chr3_3 three_prime_UTR 79901975 79902409 79901975 ID=Msa0476140-mRNA-1:three_prime_utr;Parent=Msa0476140-mRNA-1
Gene Sequence

>Msa0476140

ATGAAAATGGCGACCCTGATGAGGTTACCAACAGCCACACCTGGTAGGGTGGTGACGAAGACGAGAGAGGCATTTCCTGTTCTTTATCCTAGTCATCATTTTGTTGAGTTTTGCAAAGGTGGAAGAAGAGGAAGAAGGATTATTAGAGTGGGAGTGAAATGCAATATCAACAGCAATAGCAATAGCAATAGCAATTCAGAGAGGGCAGTGAATCTTGGACCAGGGACACCTGTTAGGCCAACAAGTATACTTGTGGTTGGAGCCACGGGGACTTTGGGAAGGCAGATTGTTCGGAGGGCACTGGACGAAGGATACGACGTCCGGTGTCTGGTAAGGCCGAGGCCTGCTCCAGCTGACTTCCTTCGTGATTGGGGAGCAACTGTTGTGAATGCTGATCTTAGTAAACCTGAGACTATTCCTGCTACATTAGTTGGAGTTCATACTGTTATTGACTGCGCCACTGGCCGTCCTGAAGAGCCTATCAAAACAGTTGATTGGGAAGGTAAAGTTGCTCTTATTCAATGTGCTAAAGCAATGGGTATTCAGAAATATGTTTTCTATTCCATCCATAACTGCGACAAACATCCCGAGGTCCCACTCATGGAGATCAAGTATTGCACTGAGAACTTCCTCCGTGATTCTGGACTCAATCACATTGTCATCCGTTTATGTGGTTTCATGCAAGGTCTTATTGGCCAGTATGCTGTTCCTATTCTCGAAGAAAAATCTGTTTGGGGAACTGACGCCCCCACCAGAATCGCTTACATGGATACTCAGGATATAGCTCGCTTGACTTTTATAGCCTTACGAAATGAAAAAATCAATGGTAAACTTCTTACATTTGCTGGTCCTCGTGCGTGGACTACCCAAGAGGTGATTACATTGTGTGAGAGGCTTGCGGGCCAAGATGCTAATGTAACTACAGTTCCTGTCTCCGTTTTAAGACTCACTCGTCAGTTAACCCGCTTTTTTGAGTGGACAAATGATGTTGCTGACAGATTGGCATTTTCAGAGGTGCTTACAAGTGACACAGTTTTCTCTGTTCCAATGGCGGAGACATACAACCTACTTGGTGTCGATACCAAAGATATAATTACATTAGAGAAGTATTTGCAGGACTACTTCACGAACATATTGAAGAAGTTGAAGGATCTCAAAGCCCAGTCGAAACAATCAGATATTTTCTTCTGA

Protein sequence

>Msa0476140

MKMATLMRLPTATPGRVVTKTREAFPVLYPSHHFVEFCKGGRRGRRIIRVGVKCNINSNSNSNSNSERAVNLGPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETIPATLVGVHTVIDCATGRPEEPIKTVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKYCTENFLRDSGLNHIVIRLCGFMQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNEKINGKLLTFAGPRAWTTQEVITLCERLAGQDANVTTVPVSVLRLTRQLTRFFEWTNDVADRLAFSEVLTSDTVFSVPMAETYNLLGVDTKDIITLEKYLQDYFTNILKKLKDLKAQSKQSDIFF*