AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1376510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376510 MtrunA17_Chr3g0146001 96.222 397 3 3 1 389 1 393 0.0 771
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376510 AT4G35250.1 90.490 347 26 1 43 389 56 395 0.0 650

Find 131 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAATAAATTTAAGATTAT+TGG 0.101403 tig0019825:+25741 Msa1376510:five_prime_UTR
ATTCCAATGCAGGGTCTTAT+TGG 0.228861 tig0019825:+26661 Msa1376510:intron
CTCTAATGTAATTATATCTT+TGG 0.230175 tig0019825:-27635 None:intergenic
AGGTAATGTTGTGGGTATTT+AGG 0.240625 tig0019825:+27768 Msa1376510:three_prime_UTR
GAGAACTTCCTCCGTGATTC+TGG 0.246351 tig0019825:+26526 Msa1376510:CDS
AGCTGACTTCCTTCGTGATT+GGG 0.252587 tig0019825:+26255 Msa1376510:CDS
CAGCTGACTTCCTTCGTGAT+TGG 0.278974 tig0019825:+26254 Msa1376510:CDS
ATATAAATTAACCAATGTTT+TGG 0.288347 tig0019825:-27876 None:intergenic
AGTATCCATGTAAGCGATTC+TGG 0.290196 tig0019825:-26740 None:intergenic
GGTAAACTTCTTACATTTGC+TGG 0.304653 tig0019825:+26909 Msa1376510:CDS
AGTATACTTGTTGGCCTAAC+AGG 0.305613 tig0019825:-26133 None:intergenic
GTTGGAGCCACGGGGACTTT+GGG 0.335711 tig0019825:+26160 Msa1376510:CDS
CACTTCTCACTATGTACATT+TGG 0.339648 tig0019825:-27939 None:intergenic
TTATTCTTAAATACGCTTGC+CGG 0.341313 tig0019825:+27794 Msa1376510:three_prime_UTR
CTTTGGGAAGGCAGATTGTT+CGG 0.350602 tig0019825:+26176 Msa1376510:CDS
TGGCTGTTGGTAACCTCATA+AGG 0.352946 tig0019825:-25940 None:intergenic
CAGGATGTTTGTCGCAGTTA+TGG 0.353588 tig0019825:-26471 None:intergenic
TACATTAGAGAAGTATTTGC+AGG 0.361917 tig0019825:+27648 Msa1376510:CDS
TATTGGATTGGAAGGAGTAT+TGG 0.362278 tig0019825:+25841 Msa1376510:five_prime_UTR
ACTATTCCTGCTACATTAGT+TGG 0.362432 tig0019825:+26316 Msa1376510:CDS
TGGAAGAAGGATTATTAGAG+TGG 0.364586 tig0019825:+26045 Msa1376510:CDS
TTCTTACGTGGGCTTACAAT+TGG 0.375224 tig0019825:+27835 Msa1376510:three_prime_UTR
GGTTGGAGCCACGGGGACTT+TGG 0.381360 tig0019825:+26159 Msa1376510:CDS
GCCTATCAAAACAGTTGATT+GGG 0.393639 tig0019825:+26381 Msa1376510:CDS
ACATTGTGTGAGAGGCTTGC+GGG 0.395591 tig0019825:+26963 Msa1376510:CDS
TCAGAGAGGGCGGTGAATCT+TGG 0.400193 tig0019825:+26100 Msa1376510:CDS
AGCCTATCAAAACAGTTGAT+TGG 0.402139 tig0019825:+26380 Msa1376510:CDS
CACACAATGTAATCACCTCT+TGG 0.411787 tig0019825:-26950 None:intergenic
AGGATACGACGTCCGGTGTC+TGG 0.418347 tig0019825:+26213 Msa1376510:CDS
CATATTGTCATCCGTTTATG+TGG 0.427822 tig0019825:+26556 Msa1376510:CDS
ATCTCCATGAGTGGGACCTC+AGG 0.428640 tig0019825:-26490 None:intergenic
ATACTTGTGGTTGGAGCCAC+GGG 0.432518 tig0019825:+26151 Msa1376510:CDS
AAATATCTGATTGTTTCGAC+TGG 0.443973 tig0019825:-27714 None:intergenic
CGAGAATAGGAACAGCATAC+TGG 0.446584 tig0019825:-26684 None:intergenic
ACTGTTATTGACTGCGCCAC+TGG 0.449162 tig0019825:+26346 Msa1376510:CDS
TGAAAATGGCGACCCTTATG+AGG 0.456266 tig0019825:+25927 Msa1376510:CDS
CTTGCATGAAACCACATAAA+CGG 0.459989 tig0019825:-26567 None:intergenic
ATCCGTTGATGAAAGATAAG+AGG 0.462994 tig0019825:+25765 Msa1376510:five_prime_UTR
CTGTAGTTACATTAGCATCT+TGG 0.467915 tig0019825:-26986 None:intergenic
TTGGACCAGGGACACCTGTT+AGG 0.469779 tig0019825:+26119 Msa1376510:CDS
TGCATACGAGGTAATGTTGT+GGG 0.476275 tig0019825:+27760 Msa1376510:three_prime_UTR
TATTTATGAATTGTGTCAGT+TGG 0.477239 tig0019825:+28089 Msa1376510:three_prime_UTR
GTTGGCCTAACAGGTGTCCC+TGG 0.478236 tig0019825:-26124 None:intergenic
CATGTAAGCGATTCTGGTGG+GGG 0.487749 tig0019825:-26734 None:intergenic
ATTCAATGTGCTAAAGCAAT+GGG 0.487829 tig0019825:+26421 Msa1376510:CDS
AAGTCAGCTGGAGCAGGCCT+CGG 0.491663 tig0019825:-26241 None:intergenic
ATAATGATCAGGAGGAGTAT+TGG 0.492930 tig0019825:+25824 Msa1376510:five_prime_UTR
GATCAGGAGGAGTATTGGAT+TGG 0.494164 tig0019825:+25829 Msa1376510:five_prime_UTR
GACGTGGCAAAATAATGATC+AGG 0.496951 tig0019825:+25813 Msa1376510:five_prime_UTR
AGGAGGAGTATTGGATTGGA+AGG 0.498034 tig0019825:+25833 Msa1376510:five_prime_UTR
CTGACGAGTGAGTCTTAAAA+CGG 0.500828 tig0019825:-27018 None:intergenic
GAACATATTGAAGAAGTTGA+AGG 0.506295 tig0019825:+27681 Msa1376510:CDS
CGAAGGAAGTCAGCTGGAGC+AGG 0.509309 tig0019825:-26247 None:intergenic
TTGCAAAACTCAACAAAATG+AGG 0.512716 tig0019825:-26019 None:intergenic
TATTCAATGTGCTAAAGCAA+TGG 0.515599 tig0019825:+26420 Msa1376510:CDS
CCCCACCAGAATCGCTTACA+TGG 0.515621 tig0019825:+26735 Msa1376510:CDS
ACGACGTCCGGTGTCTGGTA+AGG 0.516950 tig0019825:+26218 Msa1376510:CDS
CCATGTAAGCGATTCTGGTG+GGG 0.516968 tig0019825:-26735 None:intergenic
GCAGATTGTTCGGAGGGCAC+TGG 0.517013 tig0019825:+26186 Msa1376510:CDS
TCCGGTGTCTGGTAAGGCCG+AGG 0.517171 tig0019825:+26224 Msa1376510:CDS
TGAACTCCAACTAATGTAGC+AGG 0.522361 tig0019825:-26322 None:intergenic
CCAACCACAAGTATACTTGT+TGG 0.527488 tig0019825:-26142 None:intergenic
AAATGATGTTGCTGACAGAT+TGG 0.529217 tig0019825:+27064 Msa1376510:CDS
GCTGACTTCCTTCGTGATTG+GGG 0.529696 tig0019825:+26256 Msa1376510:CDS
GAGCCACGGGGACTTTGGGA+AGG 0.531810 tig0019825:+26164 Msa1376510:CDS
TGAGGACTAGGATAAAGAAC+AGG 0.532406 tig0019825:-26001 None:intergenic
GGTGTATTCATCCAAAACAT+TGG 0.532814 tig0019825:+27865 Msa1376510:three_prime_UTR
GGAAGAAGGATTATTAGAGT+GGG 0.533884 tig0019825:+26046 Msa1376510:CDS
ACACAATGTAATCACCTCTT+GGG 0.536741 tig0019825:-26949 None:intergenic
ATGTTTGTCGCAGTTATGGA+TGG 0.537280 tig0019825:-26467 None:intergenic
ACATCCTGAGGTCCCACTCA+TGG 0.537298 tig0019825:+26486 Msa1376510:CDS
CAATCACGAAGGAAGTCAGC+TGG 0.537462 tig0019825:-26253 None:intergenic
TATACTTGTGGTTGGAGCCA+CGG 0.537842 tig0019825:+26150 Msa1376510:CDS
AGGTTGTATGTCTCCGCCAT+TGG 0.538477 tig0019825:-27598 None:intergenic
AATGTAGCAGGAATAGTCTC+AGG 0.539300 tig0019825:-26310 None:intergenic
GTCCTCGTCACCACCCTACC+AGG 0.551446 tig0019825:-25965 None:intergenic
TCCATGTAAGCGATTCTGGT+GGG 0.555397 tig0019825:-26736 None:intergenic
GACACAATTCATAAATACTT+AGG 0.556487 tig0019825:-28083 None:intergenic
CCCCTCTTATCTTTCATCAA+CGG 0.558108 tig0019825:-25767 None:intergenic
GTGAGTCTTAAAACGGAGAC+AGG 0.566202 tig0019825:-27011 None:intergenic
AGGCTCTTCAGGACGGCCAG+TGG 0.567494 tig0019825:-26362 None:intergenic
TCCGTTGATGAAAGATAAGA+GGG 0.567847 tig0019825:+25766 Msa1376510:five_prime_UTR
GCGGAGACATACAACCTACT+TGG 0.567860 tig0019825:+27604 Msa1376510:CDS
ACCAACAGCCACACCTGGTA+GGG 0.570641 tig0019825:+25952 Msa1376510:CDS
AATATCTGATTGTTTCGACT+GGG 0.571429 tig0019825:-27713 None:intergenic
TACATTGTGTGAGAGGCTTG+CGG 0.572162 tig0019825:+26962 Msa1376510:CDS
ACCCTACCAGGTGTGGCTGT+TGG 0.574945 tig0019825:-25953 None:intergenic
AATCGCTTACATGGATACTC+AGG 0.576431 tig0019825:+26744 Msa1376510:CDS
CATTTGCTGGTCCTCGTGCG+TGG 0.576997 tig0019825:+26922 Msa1376510:CDS
GGGAAGGCAGATTGTTCGGA+GGG 0.578906 tig0019825:+26180 Msa1376510:CDS
AGGGCGGTGAATCTTGGACC+AGG 0.579063 tig0019825:+26106 Msa1376510:CDS
AGGTGATTACATTGTGTGAG+AGG 0.579608 tig0019825:+26955 Msa1376510:CDS
CGTCACCACCCTACCAGGTG+TGG 0.580172 tig0019825:-25960 None:intergenic
CTTTGGTATCGACACCAAGT+AGG 0.582966 tig0019825:-27618 None:intergenic
TGGACGAAGGATACGACGTC+CGG 0.585255 tig0019825:+26206 Msa1376510:CDS
AAAGATAAGAGGGGTGCGGT+AGG 0.586869 tig0019825:+25776 Msa1376510:five_prime_UTR
GGCTGTTGGTAACCTCATAA+GGG 0.595542 tig0019825:-25939 None:intergenic
ATCAAAACAGTTGATTGGGA+AGG 0.599943 tig0019825:+26385 Msa1376510:CDS
AACTCAACAAAATGAGGACT+AGG 0.604336 tig0019825:-26013 None:intergenic
AGGTTACCAACAGCCACACC+TGG 0.605179 tig0019825:+25947 Msa1376510:CDS
CCAACAAGTATACTTGTGGT+TGG 0.608034 tig0019825:+26142 Msa1376510:CDS
TTGCATACGAGGTAATGTTG+TGG 0.612997 tig0019825:+27759 Msa1376510:three_prime_UTR
AACAGCCACACCTGGTAGGG+TGG 0.616669 tig0019825:+25955 Msa1376510:CDS
TATGATTGAGTCCAGAATCA+CGG 0.624029 tig0019825:-26537 None:intergenic
TACCAACAGCCACACCTGGT+AGG 0.624838 tig0019825:+25951 Msa1376510:CDS
GGTGGTGACGAGGACGAGAG+AGG 0.627135 tig0019825:+25973 Msa1376510:CDS
ATCCATGTAAGCGATTCTGG+TGG 0.627734 tig0019825:-26737 None:intergenic
CAATACTTGATCTCCATGAG+TGG 0.630169 tig0019825:-26499 None:intergenic
TGGGAAGGCAGATTGTTCGG+AGG 0.630372 tig0019825:+26179 Msa1376510:CDS
GTTCGGAGGGCACTGGACGA+AGG 0.631129 tig0019825:+26193 Msa1376510:CDS
CAGCAATAGCAATTCAGAGA+GGG 0.635071 tig0019825:+26087 Msa1376510:CDS
TAGGCCAACAAGTATACTTG+TGG 0.636061 tig0019825:+26138 Msa1376510:CDS
GATGAAAGATAAGAGGGGTG+CGG 0.639836 tig0019825:+25772 Msa1376510:five_prime_UTR
CACCTGGTAGGGTGGTGACG+AGG 0.642411 tig0019825:+25963 Msa1376510:CDS
GTATTGGATTGAATGAACGA+AGG 0.645170 tig0019825:+25857 Msa1376510:five_prime_UTR
ATGATTTGTAATTGCATACG+AGG 0.645440 tig0019825:+27748 Msa1376510:three_prime_UTR
GCCTCGGCCTTACCAGACAC+CGG 0.648299 tig0019825:-26225 None:intergenic
AATACTTGATCTCCATGAGT+GGG 0.653716 tig0019825:-26498 None:intergenic
GGGCGGTGAATCTTGGACCA+GGG 0.653844 tig0019825:+26107 Msa1376510:CDS
CAATAGCAATTCAGAGAGGG+CGG 0.659474 tig0019825:+26090 Msa1376510:CDS
GTGGCAAAATAATGATCAGG+AGG 0.665461 tig0019825:+25816 Msa1376510:five_prime_UTR
CTGCCTTCCCAAAGTCCCCG+TGG 0.669955 tig0019825:-26167 None:intergenic
TCGTGCGTGGACTACCCAAG+AGG 0.692160 tig0019825:+26935 Msa1376510:CDS
GGTAGCAGTAAAAGTAGACG+TGG 0.693126 tig0019825:+25797 Msa1376510:five_prime_UTR
TAACTGCGACAAACATCCTG+AGG 0.699487 tig0019825:+26474 Msa1376510:CDS
TCTTGGGTAGTCCACGCACG+AGG 0.707865 tig0019825:-26933 None:intergenic
CAGTTGCTCCCCAATCACGA+AGG 0.720142 tig0019825:-26264 None:intergenic
ACAGCAATAGCAATTCAGAG+AGG 0.723979 tig0019825:+26086 Msa1376510:CDS
TACTTGTGGTTGGAGCCACG+GGG 0.774798 tig0019825:+26152 Msa1376510:CDS
GATTGAGTCCAGAATCACGG+AGG 0.782844 tig0019825:-26534 None:intergenic
CCGTTGATGAAAGATAAGAG+GGG 0.799666 tig0019825:+25767 Msa1376510:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTCTTTCATTTTAA+TGG + tig0019825:27501-27520 Msa1376510:intron 15.0%
!! AATAAAAAAACAATATACAC+CGG - tig0019825:27816-27835 None:intergenic 15.0%
!!! ATATAAATTAACCAATGTTT+TGG - tig0019825:27879-27898 None:intergenic 15.0%
!!! TATTTTCTCTTTCATTTTAA+TGG + tig0019825:27501-27520 Msa1376510:intron 15.0%
!! AATAAAAAAACAATATACAC+CGG - tig0019825:27816-27835 None:intergenic 15.0%
!!! ATATAAATTAACCAATGTTT+TGG - tig0019825:27879-27898 None:intergenic 15.0%
!! TTATTTCCGAAAAATGAAAA+TGG + tig0019825:25913-25932 Msa1376510:exon 20.0%
!!! ATTGATTTTTTCATTTCGTA+AGG - tig0019825:26889-26908 None:intergenic 20.0%
!! TTACGAAATGAAAAAATCAA+TGG + tig0019825:26888-26907 Msa1376510:CDS 20.0%
!! CAACAAGTATTAATGAATTT+AGG - tig0019825:27124-27143 None:intergenic 20.0%
!! ATACAAAAAAAAGAAGAAGA+AGG - tig0019825:27168-27187 None:intergenic 20.0%
!! CTCTAATGTAATTATATCTT+TGG - tig0019825:27638-27657 None:intergenic 20.0%
!!! TTGTTTTTTTATTTCTTACG+TGG + tig0019825:27823-27842 Msa1376510:three_prime_UTR 20.0%
!!! TGTTTTTTTATTTCTTACGT+GGG + tig0019825:27824-27843 Msa1376510:three_prime_UTR 20.0%
!! TTATTTCCGAAAAATGAAAA+TGG + tig0019825:25913-25932 Msa1376510:exon 20.0%
!!! ATTGATTTTTTCATTTCGTA+AGG - tig0019825:26889-26908 None:intergenic 20.0%
!! TTACGAAATGAAAAAATCAA+TGG + tig0019825:26888-26907 Msa1376510:CDS 20.0%
!! CAACAAGTATTAATGAATTT+AGG - tig0019825:27124-27143 None:intergenic 20.0%
!! ATACAAAAAAAAGAAGAAGA+AGG - tig0019825:27168-27187 None:intergenic 20.0%
!! CTCTAATGTAATTATATCTT+TGG - tig0019825:27638-27657 None:intergenic 20.0%
!!! TTGTTTTTTTATTTCTTACG+TGG + tig0019825:27823-27842 Msa1376510:three_prime_UTR 20.0%
!!! TGTTTTTTTATTTCTTACGT+GGG + tig0019825:27824-27843 Msa1376510:three_prime_UTR 20.0%
! ATGAATGAAGTGATTGATTA+AGG - tig0019825:26818-26837 None:intergenic 25.0%
!! TTCATTAATACTTGTTGCAT+TGG + tig0019825:27127-27146 Msa1376510:intron 25.0%
!! TTTTTGTTACATTGCTTGAA+TGG + tig0019825:27210-27229 Msa1376510:intron 25.0%
!!! TATCAAATAATAGTGTTGGT+CGG - tig0019825:27426-27445 None:intergenic 25.0%
! GATGTATCAAATAATAGTGT+TGG - tig0019825:27430-27449 None:intergenic 25.0%
! GAGAAAATATTATATGCACT+AGG - tig0019825:27490-27509 None:intergenic 25.0%
!!! TTTCTCTTTCATTTTAATGG+TGG + tig0019825:27504-27523 Msa1376510:intron 25.0%
! GACACAATTCATAAATACTT+AGG - tig0019825:28086-28105 None:intergenic 25.0%
! TATTTATGAATTGTGTCAGT+TGG + tig0019825:28089-28108 Msa1376510:three_prime_UTR 25.0%
! ATGAATGAAGTGATTGATTA+AGG - tig0019825:26818-26837 None:intergenic 25.0%
!! TTCATTAATACTTGTTGCAT+TGG + tig0019825:27127-27146 Msa1376510:intron 25.0%
!! TTTTTGTTACATTGCTTGAA+TGG + tig0019825:27210-27229 Msa1376510:intron 25.0%
!!! TATCAAATAATAGTGTTGGT+CGG - tig0019825:27426-27445 None:intergenic 25.0%
! GATGTATCAAATAATAGTGT+TGG - tig0019825:27430-27449 None:intergenic 25.0%
! GAGAAAATATTATATGCACT+AGG - tig0019825:27490-27509 None:intergenic 25.0%
!!! TTTCTCTTTCATTTTAATGG+TGG + tig0019825:27504-27523 Msa1376510:intron 25.0%
! GACACAATTCATAAATACTT+AGG - tig0019825:28086-28105 None:intergenic 25.0%
! TATTTATGAATTGTGTCAGT+TGG + tig0019825:28089-28108 Msa1376510:three_prime_UTR 25.0%
TTGCAAAACTCAACAAAATG+AGG - tig0019825:26022-26041 None:intergenic 30.0%
! CATTTTGTTGAGTTTTGCAA+AGG + tig0019825:26022-26041 Msa1376510:CDS 30.0%
TATTCAATGTGCTAAAGCAA+TGG + tig0019825:26420-26439 Msa1376510:CDS 30.0%
ATTCAATGTGCTAAAGCAAT+GGG + tig0019825:26421-26440 Msa1376510:CDS 30.0%
ACAATTCATAATTCCAATGC+AGG + tig0019825:26651-26670 Msa1376510:intron 30.0%
CAATTCATAATTCCAATGCA+GGG + tig0019825:26652-26671 Msa1376510:intron 30.0%
! ACAGATTTTTCTTCGAGAAT+AGG - tig0019825:26700-26719 None:intergenic 30.0%
TTCTCGAAGAAAAATCTGTT+TGG + tig0019825:26701-26720 Msa1376510:CDS 30.0%
TCTCGAAGAAAAATCTGTTT+GGG + tig0019825:26702-26721 Msa1376510:CDS 30.0%
AAAAAGAAGAAGAAGGACTT+GGG - tig0019825:27161-27180 None:intergenic 30.0%
AAAAAAGAAGAAGAAGGACT+TGG - tig0019825:27162-27181 None:intergenic 30.0%
TGCATTACTACATTTCCATT+GGG + tig0019825:27280-27299 Msa1376510:intron 30.0%
GGAATAAACCTGTAAGAATA+GGG - tig0019825:27392-27411 None:intergenic 30.0%
TGGAATAAACCTGTAAGAAT+AGG - tig0019825:27393-27412 None:intergenic 30.0%
ACAGGTTTATTCCATTCTAT+TGG + tig0019825:27399-27418 Msa1376510:intron 30.0%
CATGCCTATAGTTGATTATA+CGG + tig0019825:27532-27551 Msa1376510:intron 30.0%
ATGCCTATAGTTGATTATAC+GGG + tig0019825:27533-27552 Msa1376510:intron 30.0%
TTTCCCGTATAATCAACTAT+AGG - tig0019825:27539-27558 None:intergenic 30.0%
ATTATACGGGAAATATTTGC+AGG + tig0019825:27546-27565 Msa1376510:intron 30.0%
!! TACATTAGAGAAGTATTTGC+AGG + tig0019825:27648-27667 Msa1376510:CDS 30.0%
GAACATATTGAAGAAGTTGA+AGG + tig0019825:27681-27700 Msa1376510:CDS 30.0%
AATATCTGATTGTTTCGACT+GGG - tig0019825:27716-27735 None:intergenic 30.0%
AAATATCTGATTGTTTCGAC+TGG - tig0019825:27717-27736 None:intergenic 30.0%
! ATGATTTGTAATTGCATACG+AGG + tig0019825:27748-27767 Msa1376510:three_prime_UTR 30.0%
TTATTCTTAAATACGCTTGC+CGG + tig0019825:27794-27813 Msa1376510:three_prime_UTR 30.0%
TTGCAAAACTCAACAAAATG+AGG - tig0019825:26022-26041 None:intergenic 30.0%
! CATTTTGTTGAGTTTTGCAA+AGG + tig0019825:26022-26041 Msa1376510:CDS 30.0%
TATTCAATGTGCTAAAGCAA+TGG + tig0019825:26420-26439 Msa1376510:CDS 30.0%
ATTCAATGTGCTAAAGCAAT+GGG + tig0019825:26421-26440 Msa1376510:CDS 30.0%
ACAATTCATAATTCCAATGC+AGG + tig0019825:26651-26670 Msa1376510:intron 30.0%
CAATTCATAATTCCAATGCA+GGG + tig0019825:26652-26671 Msa1376510:intron 30.0%
! ACAGATTTTTCTTCGAGAAT+AGG - tig0019825:26700-26719 None:intergenic 30.0%
TTCTCGAAGAAAAATCTGTT+TGG + tig0019825:26701-26720 Msa1376510:CDS 30.0%
TCTCGAAGAAAAATCTGTTT+GGG + tig0019825:26702-26721 Msa1376510:CDS 30.0%
AAAAAGAAGAAGAAGGACTT+GGG - tig0019825:27161-27180 None:intergenic 30.0%
AAAAAAGAAGAAGAAGGACT+TGG - tig0019825:27162-27181 None:intergenic 30.0%
TGCATTACTACATTTCCATT+GGG + tig0019825:27280-27299 Msa1376510:intron 30.0%
GGAATAAACCTGTAAGAATA+GGG - tig0019825:27392-27411 None:intergenic 30.0%
TGGAATAAACCTGTAAGAAT+AGG - tig0019825:27393-27412 None:intergenic 30.0%
ACAGGTTTATTCCATTCTAT+TGG + tig0019825:27399-27418 Msa1376510:intron 30.0%
CATGCCTATAGTTGATTATA+CGG + tig0019825:27532-27551 Msa1376510:intron 30.0%
ATGCCTATAGTTGATTATAC+GGG + tig0019825:27533-27552 Msa1376510:intron 30.0%
TTTCCCGTATAATCAACTAT+AGG - tig0019825:27539-27558 None:intergenic 30.0%
ATTATACGGGAAATATTTGC+AGG + tig0019825:27546-27565 Msa1376510:intron 30.0%
!! TACATTAGAGAAGTATTTGC+AGG + tig0019825:27648-27667 Msa1376510:CDS 30.0%
GAACATATTGAAGAAGTTGA+AGG + tig0019825:27681-27700 Msa1376510:CDS 30.0%
AATATCTGATTGTTTCGACT+GGG - tig0019825:27716-27735 None:intergenic 30.0%
AAATATCTGATTGTTTCGAC+TGG - tig0019825:27717-27736 None:intergenic 30.0%
! ATGATTTGTAATTGCATACG+AGG + tig0019825:27748-27767 Msa1376510:three_prime_UTR 30.0%
TTATTCTTAAATACGCTTGC+CGG + tig0019825:27794-27813 Msa1376510:three_prime_UTR 30.0%
! ATCCGTTGATGAAAGATAAG+AGG + tig0019825:25765-25784 Msa1376510:five_prime_UTR 35.0%
! TCCGTTGATGAAAGATAAGA+GGG + tig0019825:25766-25785 Msa1376510:five_prime_UTR 35.0%
! ATAATGATCAGGAGGAGTAT+TGG + tig0019825:25824-25843 Msa1376510:five_prime_UTR 35.0%
! TATTGGATTGGAAGGAGTAT+TGG + tig0019825:25841-25860 Msa1376510:five_prime_UTR 35.0%
GTATTGGATTGAATGAACGA+AGG + tig0019825:25857-25876 Msa1376510:five_prime_UTR 35.0%
AACTCAACAAAATGAGGACT+AGG - tig0019825:26016-26035 None:intergenic 35.0%
! TTTGTTGAGTTTTGCAAAGG+TGG + tig0019825:26025-26044 Msa1376510:CDS 35.0%
TGGAAGAAGGATTATTAGAG+TGG + tig0019825:26045-26064 Msa1376510:CDS 35.0%
GGAAGAAGGATTATTAGAGT+GGG + tig0019825:26046-26065 Msa1376510:CDS 35.0%
ACTATTCCTGCTACATTAGT+TGG + tig0019825:26316-26335 Msa1376510:CDS 35.0%
AGCCTATCAAAACAGTTGAT+TGG + tig0019825:26380-26399 Msa1376510:CDS 35.0%
GCCTATCAAAACAGTTGATT+GGG + tig0019825:26381-26400 Msa1376510:CDS 35.0%
!!! TCCCAATCAACTGTTTTGAT+AGG - tig0019825:26385-26404 None:intergenic 35.0%
ATCAAAACAGTTGATTGGGA+AGG + tig0019825:26385-26404 Msa1376510:CDS 35.0%
AATACTTGATCTCCATGAGT+GGG - tig0019825:26501-26520 None:intergenic 35.0%
TATGATTGAGTCCAGAATCA+CGG - tig0019825:26540-26559 None:intergenic 35.0%
CATATTGTCATCCGTTTATG+TGG + tig0019825:26556-26575 Msa1376510:CDS 35.0%
CTTGCATGAAACCACATAAA+CGG - tig0019825:26570-26589 None:intergenic 35.0%
CTCGAAGAAAAATCTGTTTG+GGG + tig0019825:26703-26722 Msa1376510:CDS 35.0%
GGTAAACTTCTTACATTTGC+TGG + tig0019825:26909-26928 Msa1376510:CDS 35.0%
ACACAATGTAATCACCTCTT+GGG - tig0019825:26952-26971 None:intergenic 35.0%
CTGTAGTTACATTAGCATCT+TGG - tig0019825:26989-27008 None:intergenic 35.0%
ATTTGTCCACTCAAAAAAGC+GGG - tig0019825:27048-27067 None:intergenic 35.0%
CATTTGTCCACTCAAAAAAG+CGG - tig0019825:27049-27068 None:intergenic 35.0%
AAATGATGTTGCTGACAGAT+TGG + tig0019825:27064-27083 Msa1376510:CDS 35.0%
CTGCATTACTACATTTCCAT+TGG + tig0019825:27279-27298 Msa1376510:intron 35.0%
GCATTACTACATTTCCATTG+GGG + tig0019825:27281-27300 Msa1376510:intron 35.0%
! CTGTAAGAATAGGGTTTGTT+TGG - tig0019825:27383-27402 None:intergenic 35.0%
CAAACAAACCCTATTCTTAC+AGG + tig0019825:27381-27400 Msa1376510:intron 35.0%
ATATGCACTAGGAATCTGTT+TGG - tig0019825:27479-27498 None:intergenic 35.0%
AGGTAATGTTGTGGGTATTT+AGG + tig0019825:27768-27787 Msa1376510:three_prime_UTR 35.0%
GGTGTATTCATCCAAAACAT+TGG + tig0019825:27865-27884 Msa1376510:three_prime_UTR 35.0%
CACTTCTCACTATGTACATT+TGG - tig0019825:27942-27961 None:intergenic 35.0%
! ATCCGTTGATGAAAGATAAG+AGG + tig0019825:25765-25784 Msa1376510:five_prime_UTR 35.0%
! TCCGTTGATGAAAGATAAGA+GGG + tig0019825:25766-25785 Msa1376510:five_prime_UTR 35.0%
! ATAATGATCAGGAGGAGTAT+TGG + tig0019825:25824-25843 Msa1376510:five_prime_UTR 35.0%
! TATTGGATTGGAAGGAGTAT+TGG + tig0019825:25841-25860 Msa1376510:five_prime_UTR 35.0%
GTATTGGATTGAATGAACGA+AGG + tig0019825:25857-25876 Msa1376510:five_prime_UTR 35.0%
AACTCAACAAAATGAGGACT+AGG - tig0019825:26016-26035 None:intergenic 35.0%
! TTTGTTGAGTTTTGCAAAGG+TGG + tig0019825:26025-26044 Msa1376510:CDS 35.0%
TGGAAGAAGGATTATTAGAG+TGG + tig0019825:26045-26064 Msa1376510:CDS 35.0%
GGAAGAAGGATTATTAGAGT+GGG + tig0019825:26046-26065 Msa1376510:CDS 35.0%
ACTATTCCTGCTACATTAGT+TGG + tig0019825:26316-26335 Msa1376510:CDS 35.0%
AGCCTATCAAAACAGTTGAT+TGG + tig0019825:26380-26399 Msa1376510:CDS 35.0%
GCCTATCAAAACAGTTGATT+GGG + tig0019825:26381-26400 Msa1376510:CDS 35.0%
!!! TCCCAATCAACTGTTTTGAT+AGG - tig0019825:26385-26404 None:intergenic 35.0%
ATCAAAACAGTTGATTGGGA+AGG + tig0019825:26385-26404 Msa1376510:CDS 35.0%
AATACTTGATCTCCATGAGT+GGG - tig0019825:26501-26520 None:intergenic 35.0%
TATGATTGAGTCCAGAATCA+CGG - tig0019825:26540-26559 None:intergenic 35.0%
CATATTGTCATCCGTTTATG+TGG + tig0019825:26556-26575 Msa1376510:CDS 35.0%
CTTGCATGAAACCACATAAA+CGG - tig0019825:26570-26589 None:intergenic 35.0%
CTCGAAGAAAAATCTGTTTG+GGG + tig0019825:26703-26722 Msa1376510:CDS 35.0%
GGTAAACTTCTTACATTTGC+TGG + tig0019825:26909-26928 Msa1376510:CDS 35.0%
ACACAATGTAATCACCTCTT+GGG - tig0019825:26952-26971 None:intergenic 35.0%
CTGTAGTTACATTAGCATCT+TGG - tig0019825:26989-27008 None:intergenic 35.0%
ATTTGTCCACTCAAAAAAGC+GGG - tig0019825:27048-27067 None:intergenic 35.0%
CATTTGTCCACTCAAAAAAG+CGG - tig0019825:27049-27068 None:intergenic 35.0%
AAATGATGTTGCTGACAGAT+TGG + tig0019825:27064-27083 Msa1376510:CDS 35.0%
CTGCATTACTACATTTCCAT+TGG + tig0019825:27279-27298 Msa1376510:intron 35.0%
GCATTACTACATTTCCATTG+GGG + tig0019825:27281-27300 Msa1376510:intron 35.0%
! CTGTAAGAATAGGGTTTGTT+TGG - tig0019825:27383-27402 None:intergenic 35.0%
CAAACAAACCCTATTCTTAC+AGG + tig0019825:27381-27400 Msa1376510:intron 35.0%
ATATGCACTAGGAATCTGTT+TGG - tig0019825:27479-27498 None:intergenic 35.0%
AGGTAATGTTGTGGGTATTT+AGG + tig0019825:27768-27787 Msa1376510:three_prime_UTR 35.0%
GGTGTATTCATCCAAAACAT+TGG + tig0019825:27865-27884 Msa1376510:three_prime_UTR 35.0%
CACTTCTCACTATGTACATT+TGG - tig0019825:27942-27961 None:intergenic 35.0%
CCCCTCTTATCTTTCATCAA+CGG - tig0019825:25770-25789 None:intergenic 40.0%
! CCGTTGATGAAAGATAAGAG+GGG + tig0019825:25767-25786 Msa1376510:five_prime_UTR 40.0%
GACGTGGCAAAATAATGATC+AGG + tig0019825:25813-25832 Msa1376510:five_prime_UTR 40.0%
GTGGCAAAATAATGATCAGG+AGG + tig0019825:25816-25835 Msa1376510:five_prime_UTR 40.0%
!! GGGTCGCCATTTTCATTTTT+CGG - tig0019825:25922-25941 None:intergenic 40.0%
TGAGGACTAGGATAAAGAAC+AGG - tig0019825:26004-26023 None:intergenic 40.0%
! AGTTTTGCAAAGGTGGAAGA+AGG + tig0019825:26032-26051 Msa1376510:CDS 40.0%
ACAGCAATAGCAATTCAGAG+AGG + tig0019825:26086-26105 Msa1376510:CDS 40.0%
CAGCAATAGCAATTCAGAGA+GGG + tig0019825:26087-26106 Msa1376510:CDS 40.0%
! AGTATACTTGTTGGCCTAAC+AGG - tig0019825:26136-26155 None:intergenic 40.0%
TAGGCCAACAAGTATACTTG+TGG + tig0019825:26138-26157 Msa1376510:CDS 40.0%
CCAACCACAAGTATACTTGT+TGG - tig0019825:26145-26164 None:intergenic 40.0%
CCAACAAGTATACTTGTGGT+TGG + tig0019825:26142-26161 Msa1376510:CDS 40.0%
AATGTAGCAGGAATAGTCTC+AGG - tig0019825:26313-26332 None:intergenic 40.0%
TGAACTCCAACTAATGTAGC+AGG - tig0019825:26325-26344 None:intergenic 40.0%
! TTTTGATAGGCTCTTCAGGA+CGG - tig0019825:26372-26391 None:intergenic 40.0%
!!! ACTGTTTTGATAGGCTCTTC+AGG - tig0019825:26376-26395 None:intergenic 40.0%
ATGTTTGTCGCAGTTATGGA+TGG - tig0019825:26470-26489 None:intergenic 40.0%
CAATACTTGATCTCCATGAG+TGG - tig0019825:26502-26521 None:intergenic 40.0%
! ATTCCAATGCAGGGTCTTAT+TGG + tig0019825:26661-26680 Msa1376510:intron 40.0%
AGTATCCATGTAAGCGATTC+TGG - tig0019825:26743-26762 None:intergenic 40.0%
AATCGCTTACATGGATACTC+AGG + tig0019825:26744-26763 Msa1376510:CDS 40.0%
CTATATCCTAAAAGCAGCAG+AGG - tig0019825:26848-26867 None:intergenic 40.0%
CACACAATGTAATCACCTCT+TGG - tig0019825:26953-26972 None:intergenic 40.0%
AGGTGATTACATTGTGTGAG+AGG + tig0019825:26955-26974 Msa1376510:CDS 40.0%
CTGACGAGTGAGTCTTAAAA+CGG - tig0019825:27021-27040 None:intergenic 40.0%
!!! AGTTAACCCGCTTTTTTGAG+TGG + tig0019825:27039-27058 Msa1376510:CDS 40.0%
! TGACAGATTGGCATTTTCAG+AGG + tig0019825:27076-27095 Msa1376510:CDS 40.0%
! ACTACTAGAGCAGCTGATTT+GGG - tig0019825:27246-27265 None:intergenic 40.0%
TGGATTTGGGTAAAAGCCAA+TGG - tig0019825:27315-27334 None:intergenic 40.0%
! CACAGTTTTCTCTGTTCCAA+TGG + tig0019825:27582-27601 Msa1376510:CDS 40.0%
! AGTTTTCTCTGTTCCAATGG+CGG + tig0019825:27585-27604 Msa1376510:CDS 40.0%
TTGCATACGAGGTAATGTTG+TGG + tig0019825:27759-27778 Msa1376510:three_prime_UTR 40.0%
TGCATACGAGGTAATGTTGT+GGG + tig0019825:27760-27779 Msa1376510:three_prime_UTR 40.0%
TTCTTACGTGGGCTTACAAT+TGG + tig0019825:27835-27854 Msa1376510:three_prime_UTR 40.0%
!!! GGGCTTACAATTGGTTTTGT+TGG + tig0019825:27844-27863 Msa1376510:three_prime_UTR 40.0%
! GTCTTTTAAGCATGCGATAC+AGG - tig0019825:28064-28083 None:intergenic 40.0%
CCCCTCTTATCTTTCATCAA+CGG - tig0019825:25770-25789 None:intergenic 40.0%
! CCGTTGATGAAAGATAAGAG+GGG + tig0019825:25767-25786 Msa1376510:five_prime_UTR 40.0%
GACGTGGCAAAATAATGATC+AGG + tig0019825:25813-25832 Msa1376510:five_prime_UTR 40.0%
GTGGCAAAATAATGATCAGG+AGG + tig0019825:25816-25835 Msa1376510:five_prime_UTR 40.0%
!! GGGTCGCCATTTTCATTTTT+CGG - tig0019825:25922-25941 None:intergenic 40.0%
TGAGGACTAGGATAAAGAAC+AGG - tig0019825:26004-26023 None:intergenic 40.0%
! AGTTTTGCAAAGGTGGAAGA+AGG + tig0019825:26032-26051 Msa1376510:CDS 40.0%
ACAGCAATAGCAATTCAGAG+AGG + tig0019825:26086-26105 Msa1376510:CDS 40.0%
CAGCAATAGCAATTCAGAGA+GGG + tig0019825:26087-26106 Msa1376510:CDS 40.0%
! AGTATACTTGTTGGCCTAAC+AGG - tig0019825:26136-26155 None:intergenic 40.0%
TAGGCCAACAAGTATACTTG+TGG + tig0019825:26138-26157 Msa1376510:CDS 40.0%
CCAACCACAAGTATACTTGT+TGG - tig0019825:26145-26164 None:intergenic 40.0%
CCAACAAGTATACTTGTGGT+TGG + tig0019825:26142-26161 Msa1376510:CDS 40.0%
AATGTAGCAGGAATAGTCTC+AGG - tig0019825:26313-26332 None:intergenic 40.0%
TGAACTCCAACTAATGTAGC+AGG - tig0019825:26325-26344 None:intergenic 40.0%
! TTTTGATAGGCTCTTCAGGA+CGG - tig0019825:26372-26391 None:intergenic 40.0%
!!! ACTGTTTTGATAGGCTCTTC+AGG - tig0019825:26376-26395 None:intergenic 40.0%
ATGTTTGTCGCAGTTATGGA+TGG - tig0019825:26470-26489 None:intergenic 40.0%
CAATACTTGATCTCCATGAG+TGG - tig0019825:26502-26521 None:intergenic 40.0%
! ATTCCAATGCAGGGTCTTAT+TGG + tig0019825:26661-26680 Msa1376510:intron 40.0%
AGTATCCATGTAAGCGATTC+TGG - tig0019825:26743-26762 None:intergenic 40.0%
AATCGCTTACATGGATACTC+AGG + tig0019825:26744-26763 Msa1376510:CDS 40.0%
CTATATCCTAAAAGCAGCAG+AGG - tig0019825:26848-26867 None:intergenic 40.0%
CACACAATGTAATCACCTCT+TGG - tig0019825:26953-26972 None:intergenic 40.0%
AGGTGATTACATTGTGTGAG+AGG + tig0019825:26955-26974 Msa1376510:CDS 40.0%
CTGACGAGTGAGTCTTAAAA+CGG - tig0019825:27021-27040 None:intergenic 40.0%
!!! AGTTAACCCGCTTTTTTGAG+TGG + tig0019825:27039-27058 Msa1376510:CDS 40.0%
! TGACAGATTGGCATTTTCAG+AGG + tig0019825:27076-27095 Msa1376510:CDS 40.0%
! ACTACTAGAGCAGCTGATTT+GGG - tig0019825:27246-27265 None:intergenic 40.0%
TGGATTTGGGTAAAAGCCAA+TGG - tig0019825:27315-27334 None:intergenic 40.0%
! CACAGTTTTCTCTGTTCCAA+TGG + tig0019825:27582-27601 Msa1376510:CDS 40.0%
! AGTTTTCTCTGTTCCAATGG+CGG + tig0019825:27585-27604 Msa1376510:CDS 40.0%
TTGCATACGAGGTAATGTTG+TGG + tig0019825:27759-27778 Msa1376510:three_prime_UTR 40.0%
TGCATACGAGGTAATGTTGT+GGG + tig0019825:27760-27779 Msa1376510:three_prime_UTR 40.0%
TTCTTACGTGGGCTTACAAT+TGG + tig0019825:27835-27854 Msa1376510:three_prime_UTR 40.0%
!!! GGGCTTACAATTGGTTTTGT+TGG + tig0019825:27844-27863 Msa1376510:three_prime_UTR 40.0%
! GTCTTTTAAGCATGCGATAC+AGG - tig0019825:28064-28083 None:intergenic 40.0%
GATGAAAGATAAGAGGGGTG+CGG + tig0019825:25772-25791 Msa1376510:five_prime_UTR 45.0%
GGTAGCAGTAAAAGTAGACG+TGG + tig0019825:25797-25816 Msa1376510:five_prime_UTR 45.0%
!! GATCAGGAGGAGTATTGGAT+TGG + tig0019825:25829-25848 Msa1376510:five_prime_UTR 45.0%
!! AGGAGGAGTATTGGATTGGA+AGG + tig0019825:25833-25852 Msa1376510:five_prime_UTR 45.0%
TGAAAATGGCGACCCTTATG+AGG + tig0019825:25927-25946 Msa1376510:CDS 45.0%
!! GGCTGTTGGTAACCTCATAA+GGG - tig0019825:25942-25961 None:intergenic 45.0%
!! TGGCTGTTGGTAACCTCATA+AGG - tig0019825:25943-25962 None:intergenic 45.0%
CAATAGCAATTCAGAGAGGG+CGG + tig0019825:26090-26109 Msa1376510:CDS 45.0%
TATACTTGTGGTTGGAGCCA+CGG + tig0019825:26150-26169 Msa1376510:CDS 45.0%
! CTTTGGGAAGGCAGATTGTT+CGG + tig0019825:26176-26195 Msa1376510:CDS 45.0%
! AGCTGACTTCCTTCGTGATT+GGG + tig0019825:26255-26274 Msa1376510:CDS 45.0%
CAGGATGTTTGTCGCAGTTA+TGG - tig0019825:26474-26493 None:intergenic 45.0%
TAACTGCGACAAACATCCTG+AGG + tig0019825:26474-26493 Msa1376510:CDS 45.0%
CGAGAATAGGAACAGCATAC+TGG - tig0019825:26687-26706 None:intergenic 45.0%
TCCATGTAAGCGATTCTGGT+GGG - tig0019825:26739-26758 None:intergenic 45.0%
ATCCATGTAAGCGATTCTGG+TGG - tig0019825:26740-26759 None:intergenic 45.0%
TACATTGTGTGAGAGGCTTG+CGG + tig0019825:26962-26981 Msa1376510:CDS 45.0%
GTGAGTCTTAAAACGGAGAC+AGG - tig0019825:27014-27033 None:intergenic 45.0%
GACTACTAGAGCAGCTGATT+TGG - tig0019825:27247-27266 None:intergenic 45.0%
GGGTAAAAGCCAATGGCAAT+AGG - tig0019825:27308-27327 None:intergenic 45.0%
! GCATCGACATGAGTGGATTT+GGG - tig0019825:27328-27347 None:intergenic 45.0%
! TGCATCGACATGAGTGGATT+TGG - tig0019825:27329-27348 None:intergenic 45.0%
! TTGATGTGCATCGACATGAG+TGG - tig0019825:27335-27354 None:intergenic 45.0%
TGTTGGTCGGACCAATAGAA+TGG - tig0019825:27413-27432 None:intergenic 45.0%
!! CTTTGGTATCGACACCAAGT+AGG - tig0019825:27621-27640 None:intergenic 45.0%
GATGAAAGATAAGAGGGGTG+CGG + tig0019825:25772-25791 Msa1376510:five_prime_UTR 45.0%
GGTAGCAGTAAAAGTAGACG+TGG + tig0019825:25797-25816 Msa1376510:five_prime_UTR 45.0%
!! GATCAGGAGGAGTATTGGAT+TGG + tig0019825:25829-25848 Msa1376510:five_prime_UTR 45.0%
!! AGGAGGAGTATTGGATTGGA+AGG + tig0019825:25833-25852 Msa1376510:five_prime_UTR 45.0%
TGAAAATGGCGACCCTTATG+AGG + tig0019825:25927-25946 Msa1376510:CDS 45.0%
!! GGCTGTTGGTAACCTCATAA+GGG - tig0019825:25942-25961 None:intergenic 45.0%
!! TGGCTGTTGGTAACCTCATA+AGG - tig0019825:25943-25962 None:intergenic 45.0%
CAATAGCAATTCAGAGAGGG+CGG + tig0019825:26090-26109 Msa1376510:CDS 45.0%
TATACTTGTGGTTGGAGCCA+CGG + tig0019825:26150-26169 Msa1376510:CDS 45.0%
! CTTTGGGAAGGCAGATTGTT+CGG + tig0019825:26176-26195 Msa1376510:CDS 45.0%
! AGCTGACTTCCTTCGTGATT+GGG + tig0019825:26255-26274 Msa1376510:CDS 45.0%
CAGGATGTTTGTCGCAGTTA+TGG - tig0019825:26474-26493 None:intergenic 45.0%
TAACTGCGACAAACATCCTG+AGG + tig0019825:26474-26493 Msa1376510:CDS 45.0%
CGAGAATAGGAACAGCATAC+TGG - tig0019825:26687-26706 None:intergenic 45.0%
TCCATGTAAGCGATTCTGGT+GGG - tig0019825:26739-26758 None:intergenic 45.0%
ATCCATGTAAGCGATTCTGG+TGG - tig0019825:26740-26759 None:intergenic 45.0%
TACATTGTGTGAGAGGCTTG+CGG + tig0019825:26962-26981 Msa1376510:CDS 45.0%
GTGAGTCTTAAAACGGAGAC+AGG - tig0019825:27014-27033 None:intergenic 45.0%
GACTACTAGAGCAGCTGATT+TGG - tig0019825:27247-27266 None:intergenic 45.0%
GGGTAAAAGCCAATGGCAAT+AGG - tig0019825:27308-27327 None:intergenic 45.0%
! GCATCGACATGAGTGGATTT+GGG - tig0019825:27328-27347 None:intergenic 45.0%
! TGCATCGACATGAGTGGATT+TGG - tig0019825:27329-27348 None:intergenic 45.0%
! TTGATGTGCATCGACATGAG+TGG - tig0019825:27335-27354 None:intergenic 45.0%
TGTTGGTCGGACCAATAGAA+TGG - tig0019825:27413-27432 None:intergenic 45.0%
!! CTTTGGTATCGACACCAAGT+AGG - tig0019825:27621-27640 None:intergenic 45.0%
!!! ATAAATAAATTTAAGATTAT+TGG + tig0019825:25741-25760 Msa1376510:five_prime_UTR 5.0%
!!! ATAAATAAATTTAAGATTAT+TGG + tig0019825:25741-25760 Msa1376510:five_prime_UTR 5.0%
! AAAGATAAGAGGGGTGCGGT+AGG + tig0019825:25776-25795 Msa1376510:five_prime_UTR 50.0%
ATACTTGTGGTTGGAGCCAC+GGG + tig0019825:26151-26170 Msa1376510:CDS 50.0%
CAATCACGAAGGAAGTCAGC+TGG - tig0019825:26256-26275 None:intergenic 50.0%
! CAGCTGACTTCCTTCGTGAT+TGG + tig0019825:26254-26273 Msa1376510:CDS 50.0%
! GCTGACTTCCTTCGTGATTG+GGG + tig0019825:26256-26275 Msa1376510:CDS 50.0%
! ACTGTTATTGACTGCGCCAC+TGG + tig0019825:26346-26365 Msa1376510:CDS 50.0%
GAGAACTTCCTCCGTGATTC+TGG + tig0019825:26526-26545 Msa1376510:CDS 50.0%
GATTGAGTCCAGAATCACGG+AGG - tig0019825:26537-26556 None:intergenic 50.0%
TGGCCAATAAGACCCTGCAT+TGG - tig0019825:26667-26686 None:intergenic 50.0%
CATGTAAGCGATTCTGGTGG+GGG - tig0019825:26737-26756 None:intergenic 50.0%
CCATGTAAGCGATTCTGGTG+GGG - tig0019825:26738-26757 None:intergenic 50.0%
!!! TGTCTGCCTCTGCTGCTTTT+AGG + tig0019825:26839-26858 Msa1376510:intron 50.0%
ACATTGTGTGAGAGGCTTGC+GGG + tig0019825:26963-26982 Msa1376510:CDS 50.0%
CAATGGCAATAGGTCCCCAA+TGG - tig0019825:27298-27317 None:intergenic 50.0%
CATTGGGGACCTATTGCCAT+TGG + tig0019825:27296-27315 Msa1376510:intron 50.0%
AGGTTGTATGTCTCCGCCAT+TGG - tig0019825:27601-27620 None:intergenic 50.0%
GCGGAGACATACAACCTACT+TGG + tig0019825:27604-27623 Msa1376510:CDS 50.0%
! AAAGATAAGAGGGGTGCGGT+AGG + tig0019825:25776-25795 Msa1376510:five_prime_UTR 50.0%
ATACTTGTGGTTGGAGCCAC+GGG + tig0019825:26151-26170 Msa1376510:CDS 50.0%
CAATCACGAAGGAAGTCAGC+TGG - tig0019825:26256-26275 None:intergenic 50.0%
! CAGCTGACTTCCTTCGTGAT+TGG + tig0019825:26254-26273 Msa1376510:CDS 50.0%
! GCTGACTTCCTTCGTGATTG+GGG + tig0019825:26256-26275 Msa1376510:CDS 50.0%
! ACTGTTATTGACTGCGCCAC+TGG + tig0019825:26346-26365 Msa1376510:CDS 50.0%
GAGAACTTCCTCCGTGATTC+TGG + tig0019825:26526-26545 Msa1376510:CDS 50.0%
GATTGAGTCCAGAATCACGG+AGG - tig0019825:26537-26556 None:intergenic 50.0%
TGGCCAATAAGACCCTGCAT+TGG - tig0019825:26667-26686 None:intergenic 50.0%
CATGTAAGCGATTCTGGTGG+GGG - tig0019825:26737-26756 None:intergenic 50.0%
CCATGTAAGCGATTCTGGTG+GGG - tig0019825:26738-26757 None:intergenic 50.0%
!!! TGTCTGCCTCTGCTGCTTTT+AGG + tig0019825:26839-26858 Msa1376510:intron 50.0%
ACATTGTGTGAGAGGCTTGC+GGG + tig0019825:26963-26982 Msa1376510:CDS 50.0%
CAATGGCAATAGGTCCCCAA+TGG - tig0019825:27298-27317 None:intergenic 50.0%
CATTGGGGACCTATTGCCAT+TGG + tig0019825:27296-27315 Msa1376510:intron 50.0%
AGGTTGTATGTCTCCGCCAT+TGG - tig0019825:27601-27620 None:intergenic 50.0%
GCGGAGACATACAACCTACT+TGG + tig0019825:27604-27623 Msa1376510:CDS 50.0%
AGGTTACCAACAGCCACACC+TGG + tig0019825:25947-25966 Msa1376510:CDS 55.0%
TACCAACAGCCACACCTGGT+AGG + tig0019825:25951-25970 Msa1376510:CDS 55.0%
ACCAACAGCCACACCTGGTA+GGG + tig0019825:25952-25971 Msa1376510:CDS 55.0%
TCAGAGAGGGCGGTGAATCT+TGG + tig0019825:26100-26119 Msa1376510:CDS 55.0%
TTGGACCAGGGACACCTGTT+AGG + tig0019825:26119-26138 Msa1376510:CDS 55.0%
TACTTGTGGTTGGAGCCACG+GGG + tig0019825:26152-26171 Msa1376510:CDS 55.0%
TGGGAAGGCAGATTGTTCGG+AGG + tig0019825:26179-26198 Msa1376510:CDS 55.0%
GGGAAGGCAGATTGTTCGGA+GGG + tig0019825:26180-26199 Msa1376510:CDS 55.0%
TGGACGAAGGATACGACGTC+CGG + tig0019825:26206-26225 Msa1376510:CDS 55.0%
CAGTTGCTCCCCAATCACGA+AGG - tig0019825:26267-26286 None:intergenic 55.0%
ACATCCTGAGGTCCCACTCA+TGG + tig0019825:26486-26505 Msa1376510:CDS 55.0%
ATCTCCATGAGTGGGACCTC+AGG - tig0019825:26493-26512 None:intergenic 55.0%
CCCCACCAGAATCGCTTACA+TGG + tig0019825:26735-26754 Msa1376510:CDS 55.0%
AGGTTACCAACAGCCACACC+TGG + tig0019825:25947-25966 Msa1376510:CDS 55.0%
TACCAACAGCCACACCTGGT+AGG + tig0019825:25951-25970 Msa1376510:CDS 55.0%
ACCAACAGCCACACCTGGTA+GGG + tig0019825:25952-25971 Msa1376510:CDS 55.0%
TCAGAGAGGGCGGTGAATCT+TGG + tig0019825:26100-26119 Msa1376510:CDS 55.0%
TTGGACCAGGGACACCTGTT+AGG + tig0019825:26119-26138 Msa1376510:CDS 55.0%
TACTTGTGGTTGGAGCCACG+GGG + tig0019825:26152-26171 Msa1376510:CDS 55.0%
TGGGAAGGCAGATTGTTCGG+AGG + tig0019825:26179-26198 Msa1376510:CDS 55.0%
GGGAAGGCAGATTGTTCGGA+GGG + tig0019825:26180-26199 Msa1376510:CDS 55.0%
TGGACGAAGGATACGACGTC+CGG + tig0019825:26206-26225 Msa1376510:CDS 55.0%
CAGTTGCTCCCCAATCACGA+AGG - tig0019825:26267-26286 None:intergenic 55.0%
ACATCCTGAGGTCCCACTCA+TGG + tig0019825:26486-26505 Msa1376510:CDS 55.0%
ATCTCCATGAGTGGGACCTC+AGG - tig0019825:26493-26512 None:intergenic 55.0%
CCCCACCAGAATCGCTTACA+TGG + tig0019825:26735-26754 Msa1376510:CDS 55.0%
ACCCTACCAGGTGTGGCTGT+TGG - tig0019825:25956-25975 None:intergenic 60.0%
AACAGCCACACCTGGTAGGG+TGG + tig0019825:25955-25974 Msa1376510:CDS 60.0%
AGGGCGGTGAATCTTGGACC+AGG + tig0019825:26106-26125 Msa1376510:CDS 60.0%
GGGCGGTGAATCTTGGACCA+GGG + tig0019825:26107-26126 Msa1376510:CDS 60.0%
! GTTGGCCTAACAGGTGTCCC+TGG - tig0019825:26127-26146 None:intergenic 60.0%
GTTGGAGCCACGGGGACTTT+GGG + tig0019825:26160-26179 Msa1376510:CDS 60.0%
! GCAGATTGTTCGGAGGGCAC+TGG + tig0019825:26186-26205 Msa1376510:CDS 60.0%
AGGATACGACGTCCGGTGTC+TGG + tig0019825:26213-26232 Msa1376510:CDS 60.0%
ACGACGTCCGGTGTCTGGTA+AGG + tig0019825:26218-26237 Msa1376510:CDS 60.0%
AAGTCAGCTGGAGCAGGCCT+CGG - tig0019825:26244-26263 None:intergenic 60.0%
CGAAGGAAGTCAGCTGGAGC+AGG - tig0019825:26250-26269 None:intergenic 60.0%
! CATTTGCTGGTCCTCGTGCG+TGG + tig0019825:26922-26941 Msa1376510:CDS 60.0%
TCTTGGGTAGTCCACGCACG+AGG - tig0019825:26936-26955 None:intergenic 60.0%
! TCGTGCGTGGACTACCCAAG+AGG + tig0019825:26935-26954 Msa1376510:CDS 60.0%
ACCCTACCAGGTGTGGCTGT+TGG - tig0019825:25956-25975 None:intergenic 60.0%
AACAGCCACACCTGGTAGGG+TGG + tig0019825:25955-25974 Msa1376510:CDS 60.0%
AGGGCGGTGAATCTTGGACC+AGG + tig0019825:26106-26125 Msa1376510:CDS 60.0%
GGGCGGTGAATCTTGGACCA+GGG + tig0019825:26107-26126 Msa1376510:CDS 60.0%
! GTTGGCCTAACAGGTGTCCC+TGG - tig0019825:26127-26146 None:intergenic 60.0%
GTTGGAGCCACGGGGACTTT+GGG + tig0019825:26160-26179 Msa1376510:CDS 60.0%
! GCAGATTGTTCGGAGGGCAC+TGG + tig0019825:26186-26205 Msa1376510:CDS 60.0%
AGGATACGACGTCCGGTGTC+TGG + tig0019825:26213-26232 Msa1376510:CDS 60.0%
ACGACGTCCGGTGTCTGGTA+AGG + tig0019825:26218-26237 Msa1376510:CDS 60.0%
AAGTCAGCTGGAGCAGGCCT+CGG - tig0019825:26244-26263 None:intergenic 60.0%
CGAAGGAAGTCAGCTGGAGC+AGG - tig0019825:26250-26269 None:intergenic 60.0%
! CATTTGCTGGTCCTCGTGCG+TGG + tig0019825:26922-26941 Msa1376510:CDS 60.0%
TCTTGGGTAGTCCACGCACG+AGG - tig0019825:26936-26955 None:intergenic 60.0%
! TCGTGCGTGGACTACCCAAG+AGG + tig0019825:26935-26954 Msa1376510:CDS 60.0%
CGTCACCACCCTACCAGGTG+TGG - tig0019825:25963-25982 None:intergenic 65.0%
! CACCTGGTAGGGTGGTGACG+AGG + tig0019825:25963-25982 Msa1376510:CDS 65.0%
GTCCTCGTCACCACCCTACC+AGG - tig0019825:25968-25987 None:intergenic 65.0%
! GGTGGTGACGAGGACGAGAG+AGG + tig0019825:25973-25992 Msa1376510:CDS 65.0%
GGTTGGAGCCACGGGGACTT+TGG + tig0019825:26159-26178 Msa1376510:CDS 65.0%
! GAGCCACGGGGACTTTGGGA+AGG + tig0019825:26164-26183 Msa1376510:CDS 65.0%
CTGCCTTCCCAAAGTCCCCG+TGG - tig0019825:26170-26189 None:intergenic 65.0%
!! GTTCGGAGGGCACTGGACGA+AGG + tig0019825:26193-26212 Msa1376510:CDS 65.0%
TCCGGTGTCTGGTAAGGCCG+AGG + tig0019825:26224-26243 Msa1376510:CDS 65.0%
GCCTCGGCCTTACCAGACAC+CGG - tig0019825:26228-26247 None:intergenic 65.0%
AGGCTCTTCAGGACGGCCAG+TGG - tig0019825:26365-26384 None:intergenic 65.0%
CGTCACCACCCTACCAGGTG+TGG - tig0019825:25963-25982 None:intergenic 65.0%
! CACCTGGTAGGGTGGTGACG+AGG + tig0019825:25963-25982 Msa1376510:CDS 65.0%
GTCCTCGTCACCACCCTACC+AGG - tig0019825:25968-25987 None:intergenic 65.0%
! GGTGGTGACGAGGACGAGAG+AGG + tig0019825:25973-25992 Msa1376510:CDS 65.0%
GGTTGGAGCCACGGGGACTT+TGG + tig0019825:26159-26178 Msa1376510:CDS 65.0%
! GAGCCACGGGGACTTTGGGA+AGG + tig0019825:26164-26183 Msa1376510:CDS 65.0%
CTGCCTTCCCAAAGTCCCCG+TGG - tig0019825:26170-26189 None:intergenic 65.0%
!! GTTCGGAGGGCACTGGACGA+AGG + tig0019825:26193-26212 Msa1376510:CDS 65.0%
TCCGGTGTCTGGTAAGGCCG+AGG + tig0019825:26224-26243 Msa1376510:CDS 65.0%
GCCTCGGCCTTACCAGACAC+CGG - tig0019825:26228-26247 None:intergenic 65.0%
AGGCTCTTCAGGACGGCCAG+TGG - tig0019825:26365-26384 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0019825 gene 25734 28174 25734 ID=Msa1376510;Name=Msa1376510
tig0019825 mRNA 25734 28174 25734 ID=Msa1376510-mRNA-1;Parent=Msa1376510;Name=Msa1376510-mRNA-1;_AED=0.05;_eAED=0.05;_QI=192|1|1|1|1|1|4|430|389
tig0019825 exon 25734 26588 25734 ID=Msa1376510-mRNA-1:exon:5188;Parent=Msa1376510-mRNA-1
tig0019825 exon 26673 26765 26673 ID=Msa1376510-mRNA-1:exon:5189;Parent=Msa1376510-mRNA-1
tig0019825 exon 26861 27097 26861 ID=Msa1376510-mRNA-1:exon:5190;Parent=Msa1376510-mRNA-1
tig0019825 exon 27568 28174 27568 ID=Msa1376510-mRNA-1:exon:5191;Parent=Msa1376510-mRNA-1
tig0019825 five_prime_UTR 25734 25925 25734 ID=Msa1376510-mRNA-1:five_prime_utr;Parent=Msa1376510-mRNA-1
tig0019825 CDS 25926 26588 25926 ID=Msa1376510-mRNA-1:cds;Parent=Msa1376510-mRNA-1
tig0019825 CDS 26673 26765 26673 ID=Msa1376510-mRNA-1:cds;Parent=Msa1376510-mRNA-1
tig0019825 CDS 26861 27097 26861 ID=Msa1376510-mRNA-1:cds;Parent=Msa1376510-mRNA-1
tig0019825 CDS 27568 27744 27568 ID=Msa1376510-mRNA-1:cds;Parent=Msa1376510-mRNA-1
tig0019825 three_prime_UTR 27745 28174 27745 ID=Msa1376510-mRNA-1:three_prime_utr;Parent=Msa1376510-mRNA-1
Gene Sequence

>Msa1376510

ATGAAAATGGCGACCCTTATGAGGTTACCAACAGCCACACCTGGTAGGGTGGTGACGAGGACGAGAGAGGCATTTCCTGTTCTTTATCCTAGTCCTCATTTTGTTGAGTTTTGCAAAGGTGGAAGAAGGATTATTAGAGTGGGAGTGAAATGCAATATCAACAGCAATAGCAATTCAGAGAGGGCGGTGAATCTTGGACCAGGGACACCTGTTAGGCCAACAAGTATACTTGTGGTTGGAGCCACGGGGACTTTGGGAAGGCAGATTGTTCGGAGGGCACTGGACGAAGGATACGACGTCCGGTGTCTGGTAAGGCCGAGGCCTGCTCCAGCTGACTTCCTTCGTGATTGGGGAGCAACTGTTGTGAATGCTGATCTTAGTAAACCTGAGACTATTCCTGCTACATTAGTTGGAGTTCATACTGTTATTGACTGCGCCACTGGCCGTCCTGAAGAGCCTATCAAAACAGTTGATTGGGAAGGTAAAGTTGCTCTTATTCAATGTGCTAAAGCAATGGGTATTCAGAAATATGTTTTCTATTCCATCCATAACTGCGACAAACATCCTGAGGTCCCACTCATGGAGATCAAGTATTGCACTGAGAACTTCCTCCGTGATTCTGGACTCAATCATATTGTCATCCGTTTATGTGGTTTCATGCAAGGTCTTATTGGCCAGTATGCTGTTCCTATTCTCGAAGAAAAATCTGTTTGGGGAACTGACGCCCCCACCAGAATCGCTTACATGGATACTCAGGATATAGCTCGCTTGACTTTTATAGCCTTACGAAATGAAAAAATCAATGGTAAACTTCTTACATTTGCTGGTCCTCGTGCGTGGACTACCCAAGAGGTGATTACATTGTGTGAGAGGCTTGCGGGCCAAGATGCTAATGTAACTACAGTTCCTGTCTCCGTTTTAAGACTCACTCGTCAGTTAACCCGCTTTTTTGAGTGGACAAATGATGTTGCTGACAGATTGGCATTTTCAGAGGTGCTTACAAGTGACACAGTTTTCTCTGTTCCAATGGCGGAGACATACAACCTACTTGGTGTCGATACCAAAGATATAATTACATTAGAGAAGTATTTGCAGGACTACTTCACGAACATATTGAAGAAGTTGAAGGATCTCAAAGCCCAGTCGAAACAATCAGATATTTTCTTCTGA

Protein sequence

>Msa1376510

MKMATLMRLPTATPGRVVTRTREAFPVLYPSPHFVEFCKGGRRIIRVGVKCNINSNSNSERAVNLGPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETIPATLVGVHTVIDCATGRPEEPIKTVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKYCTENFLRDSGLNHIVIRLCGFMQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNEKINGKLLTFAGPRAWTTQEVITLCERLAGQDANVTTVPVSVLRLTRQLTRFFEWTNDVADRLAFSEVLTSDTVFSVPMAETYNLLGVDTKDIITLEKYLQDYFTNILKKLKDLKAQSKQSDIFF*