AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1439000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439000 MtrunA17_Chr3g0146001 87.534 369 21 4 1 348 3 367 0.0 624
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439000 AT4G35250.1 87.296 307 23 2 60 350 65 371 0.0 549

Find 106 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCAATGCAGGGTCTTAT+TGG 0.228861 tig0028674:+51731 Msa1439000:intron
CTCTAATGTAATTATATCTT+TGG 0.230175 tig0028674:-52727 None:intergenic
GAGAACTTCCTCCGTGATTC+TGG 0.246351 tig0028674:+51601 Msa1439000:CDS
AGCTGACTTCCTTCGTGATT+GGG 0.252587 tig0028674:+51330 Msa1439000:CDS
CAGCTGACTTCCTTCGTGAT+TGG 0.278974 tig0028674:+51329 Msa1439000:CDS
AGTATCCATGTAAGCGATTC+TGG 0.290196 tig0028674:-51810 None:intergenic
GGTAAACTTCTTACATTTGC+TGG 0.304653 tig0028674:+51979 Msa1439000:CDS
AGTATACTTGTTGGCCTAAC+AGG 0.305613 tig0028674:-51209 None:intergenic
TGGCTGTTGGTAACCTCATC+AGG 0.328407 tig0028674:-50996 None:intergenic
TATAAATTAACCAATGTGTT+TGG 0.334141 tig0028674:-52970 None:intergenic
GTTGGAGCCACGGGGACTTT+GGG 0.335711 tig0028674:+51236 Msa1439000:CDS
CACTTCTCACTATGTACATT+TGG 0.339648 tig0028674:-53034 None:intergenic
TTATTCTTAAATACGCTTGC+CGG 0.343333 tig0028674:+52885 Msa1439000:three_prime_UTR
CTTTGGGAAGGCAGATTGTT+CGG 0.350602 tig0028674:+51252 Msa1439000:CDS
CGGGATGTTTGTCGCAGTTA+TGG 0.356296 tig0028674:-51546 None:intergenic
ACTATTCCTGCTACATTAGT+TGG 0.362432 tig0028674:+51391 Msa1439000:CDS
TTCTTACGTGGGCTTACAAT+TGG 0.375224 tig0028674:+52926 Msa1439000:three_prime_UTR
GGTTGGAGCCACGGGGACTT+TGG 0.381360 tig0028674:+51235 Msa1439000:CDS
ACATTGTGTGAGAGGCTTGC+GGG 0.395591 tig0028674:+52033 Msa1439000:CDS
CACACAATGTAATCACCTCT+TGG 0.411787 tig0028674:-52020 None:intergenic
ATACTTGTGGTTGGAGCCAC+GGG 0.432518 tig0028674:+51227 Msa1439000:CDS
TCAGAGAGGGCAGTGAATCT+TGG 0.438962 tig0028674:+51176 Msa1439000:CDS
CACATTGTCATCCGTTTATG+TGG 0.441513 tig0028674:+51631 Msa1439000:CDS
AAATATCTGATTGTTTCGAC+TGG 0.443973 tig0028674:-52805 None:intergenic
CGAGAATAGGAACAGCATAC+TGG 0.446584 tig0028674:-51754 None:intergenic
ACTGTTATTGACTGCGCCAC+TGG 0.449162 tig0028674:+51421 Msa1439000:CDS
ATCTCCATGAGTGGGACCTC+GGG 0.452186 tig0028674:-51565 None:intergenic
CTTGCATGAAACCACATAAA+CGG 0.459989 tig0028674:-51642 None:intergenic
CTGTAGTTACATTAGCATCT+TGG 0.467915 tig0028674:-52056 None:intergenic
TTGGACCAGGGACACCTGTT+AGG 0.469779 tig0028674:+51195 Msa1439000:CDS
TGCATACGAGGTAATGTTGT+GGG 0.476275 tig0028674:+52851 Msa1439000:three_prime_UTR
TATTTATGAATTGTGTCAGT+TGG 0.477239 tig0028674:+53184 Msa1439000:three_prime_UTR
GAGGAAGAAGGATTATAGAG+TGG 0.477470 tig0028674:+51109 Msa1439000:CDS
AGGAAGAAGGATTATAGAGT+GGG 0.478197 tig0028674:+51110 Msa1439000:CDS
GTTGGCCTAACAGGTGTCCC+TGG 0.478236 tig0028674:-51200 None:intergenic
CATGTAAGCGATTCTGGTGG+GGG 0.487749 tig0028674:-51804 None:intergenic
ATTCAATGTGCTAAAGCAAT+GGG 0.487829 tig0028674:+51496 Msa1439000:CDS
AAGTCAGCTGGAGCAGGCCT+CGG 0.491663 tig0028674:-51316 None:intergenic
CTGACGAGTGAGTCTTAAAA+CGG 0.500828 tig0028674:-52088 None:intergenic
GAACATATTGAAGAAGTTGA+AGG 0.506295 tig0028674:+52772 Msa1439000:exon
CGAAGGAAGTCAGCTGGAGC+AGG 0.509309 tig0028674:-51322 None:intergenic
TATTCAATGTGCTAAAGCAA+TGG 0.515599 tig0028674:+51495 Msa1439000:CDS
CCCCACCAGAATCGCTTACA+TGG 0.515621 tig0028674:+51805 Msa1439000:CDS
CCATGTAAGCGATTCTGGTG+GGG 0.516968 tig0028674:-51805 None:intergenic
GCAGATTGTTCGGAGGGCAC+TGG 0.517013 tig0028674:+51262 Msa1439000:CDS
TGAACTCCAACTAATGTAGC+AGG 0.522361 tig0028674:-51397 None:intergenic
GATCTCCATGAGTGGGACCT+CGG 0.525916 tig0028674:-51566 None:intergenic
CCAACCACAAGTATACTTGT+TGG 0.527488 tig0028674:-51218 None:intergenic
AAATGATGTTGCTGACAGAT+TGG 0.529217 tig0028674:+52134 Msa1439000:CDS
GCTGACTTCCTTCGTGATTG+GGG 0.529696 tig0028674:+51331 Msa1439000:CDS
ATGTTTGTCGCAGTTATGGA+TGG 0.531609 tig0028674:-51542 None:intergenic
GAGCCACGGGGACTTTGGGA+AGG 0.531810 tig0028674:+51240 Msa1439000:CDS
TGATGACTAGGATAAAGAAC+AGG 0.532406 tig0028674:-51057 None:intergenic
ACACAATGTAATCACCTCTT+GGG 0.536741 tig0028674:-52019 None:intergenic
CAATCACGAAGGAAGTCAGC+TGG 0.537462 tig0028674:-51328 None:intergenic
TATACTTGTGGTTGGAGCCA+CGG 0.537842 tig0028674:+51226 Msa1439000:CDS
AGGTTGTATGTCTCCGCCAT+TGG 0.538477 tig0028674:-52690 None:intergenic
AATGTAGCAGGAATAGTCTC+AGG 0.539300 tig0028674:-51385 None:intergenic
ACATCCCGAGGTCCCACTCA+TGG 0.539781 tig0028674:+51561 Msa1439000:CDS
GTCTTCGTCACCACCCTACC+AGG 0.543120 tig0028674:-51021 None:intergenic
TCCATGTAAGCGATTCTGGT+GGG 0.555397 tig0028674:-51806 None:intergenic
GACACAATTCATAAATACTT+AGG 0.556487 tig0028674:-53178 None:intergenic
GTGAGTCTTAAAACGGAGAC+AGG 0.566202 tig0028674:-52081 None:intergenic
AGGCTCTTCAGGACGGCCAG+TGG 0.567494 tig0028674:-51437 None:intergenic
GCGGAGACATACAACCTACT+TGG 0.567860 tig0028674:+52696 Msa1439000:CDS
ACCAACAGCCACACCTGGTA+GGG 0.570641 tig0028674:+51008 Msa1439000:CDS
AATATCTGATTGTTTCGACT+GGG 0.571429 tig0028674:-52804 None:intergenic
TACATTGTGTGAGAGGCTTG+CGG 0.572162 tig0028674:+52032 Msa1439000:CDS
ACCCTACCAGGTGTGGCTGT+TGG 0.574945 tig0028674:-51009 None:intergenic
AATCGCTTACATGGATACTC+AGG 0.576431 tig0028674:+51814 Msa1439000:CDS
CATTTGCTGGTCCTCGTGCG+TGG 0.576997 tig0028674:+51992 Msa1439000:CDS
GGGAAGGCAGATTGTTCGGA+GGG 0.578906 tig0028674:+51256 Msa1439000:CDS
AGGGCAGTGAATCTTGGACC+AGG 0.579063 tig0028674:+51182 Msa1439000:CDS
AGGTGATTACATTGTGTGAG+AGG 0.579608 tig0028674:+52025 Msa1439000:CDS
AAGGTGGAAGAAGAGGAAGA+AGG 0.582412 tig0028674:+51097 Msa1439000:intron
CTTTGGTATCGACACCAAGT+AGG 0.582966 tig0028674:-52710 None:intergenic
TGGACGAAGGATACGACGTC+CGG 0.585255 tig0028674:+51282 Msa1439000:CDS
CGTCACCACCCTACCAGGTG+TGG 0.587901 tig0028674:-51016 None:intergenic
AACTCAACAAAATGATGACT+AGG 0.598330 tig0028674:-51069 None:intergenic
TGAAAATGGCGACCCTGATG+AGG 0.599647 tig0028674:+50983 None:intergenic
AGGTTACCAACAGCCACACC+TGG 0.599991 tig0028674:+51003 Msa1439000:CDS
CCAACAAGTATACTTGTGGT+TGG 0.608034 tig0028674:+51218 Msa1439000:CDS
TTGCATACGAGGTAATGTTG+TGG 0.612997 tig0028674:+52850 Msa1439000:three_prime_UTR
AACAGCCACACCTGGTAGGG+TGG 0.616669 tig0028674:+51011 Msa1439000:CDS
TTGTATTCATCCAAACACAT+TGG 0.619267 tig0028674:+52960 Msa1439000:three_prime_UTR
TACCAACAGCCACACCTGGT+AGG 0.624838 tig0028674:+51007 Msa1439000:CDS
ATCCATGTAAGCGATTCTGG+TGG 0.627734 tig0028674:-51807 None:intergenic
CAATACTTGATCTCCATGAG+TGG 0.630169 tig0028674:-51574 None:intergenic
TGGGAAGGCAGATTGTTCGG+AGG 0.630372 tig0028674:+51255 Msa1439000:CDS
GTTCGGAGGGCACTGGACGA+AGG 0.631129 tig0028674:+51269 Msa1439000:CDS
TGTGATTGAGTCCAGAATCA+CGG 0.632628 tig0028674:-51612 None:intergenic
TAGGCCAACAAGTATACTTG+TGG 0.636061 tig0028674:+51214 Msa1439000:CDS
GGGCAGTGAATCTTGGACCA+GGG 0.636252 tig0028674:+51183 Msa1439000:CDS
GGCTGTTGGTAACCTCATCA+GGG 0.639067 tig0028674:-50995 None:intergenic
ATGATTTGTAATTGCATACG+AGG 0.645440 tig0028674:+52839 Msa1439000:three_prime_UTR
TAGCAATAGCAATTCAGAGA+GGG 0.647837 tig0028674:+51163 Msa1439000:CDS
AATACTTGATCTCCATGAGT+GGG 0.653716 tig0028674:-51573 None:intergenic
GGTGGTGACGAAGACGAGAG+AGG 0.657505 tig0028674:+51029 Msa1439000:CDS
CTGCCTTCCCAAAGTCCCCG+TGG 0.669955 tig0028674:-51243 None:intergenic
TCGTGCGTGGACTACCCAAG+AGG 0.692160 tig0028674:+52005 Msa1439000:CDS
TAACTGCGACAAACATCCCG+AGG 0.701969 tig0028674:+51549 Msa1439000:CDS
TCTTGGGTAGTCCACGCACG+AGG 0.707865 tig0028674:-52003 None:intergenic
CAGTTGCTCCCCAATCACGA+AGG 0.720142 tig0028674:-51339 None:intergenic
ATAGCAATAGCAATTCAGAG+AGG 0.747554 tig0028674:+51162 Msa1439000:CDS
TACTTGTGGTTGGAGCCACG+GGG 0.774798 tig0028674:+51228 Msa1439000:CDS
GATTGAGTCCAGAATCACGG+AGG 0.804340 tig0028674:-51609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTCTTTCATTTTAA+TGG + tig0028674:52593-52612 Msa1439000:intron 15.0%
!! AATAAAAAAACAATATACAC+CGG - tig0028674:52907-52926 None:intergenic 15.0%
!!! TATTTTCTCTTTCATTTTAA+TGG + tig0028674:52593-52612 Msa1439000:intron 15.0%
!! AATAAAAAAACAATATACAC+CGG - tig0028674:52907-52926 None:intergenic 15.0%
!!! ATTGATTTTTTCATTTCGTA+AGG - tig0028674:51959-51978 None:intergenic 20.0%
!! TTACGAAATGAAAAAATCAA+TGG + tig0028674:51958-51977 Msa1439000:CDS 20.0%
!! CAACAAGTATTAATGAATTT+AGG - tig0028674:52194-52213 None:intergenic 20.0%
!! ATACAAAAAAAAGAAGAAGA+AGG - tig0028674:52238-52257 None:intergenic 20.0%
!!! TCAACTATTTTTTGTTACAT+TGG + tig0028674:52272-52291 Msa1439000:intron 20.0%
!! AGCAATCTAAAAATAAGTAA+GGG - tig0028674:52298-52317 None:intergenic 20.0%
!! AAGCAATCTAAAAATAAGTA+AGG - tig0028674:52299-52318 None:intergenic 20.0%
!!! TTATTTTTAGATTGCTTGAA+TGG + tig0028674:52302-52321 Msa1439000:intron 20.0%
!! CTCTAATGTAATTATATCTT+TGG - tig0028674:52730-52749 None:intergenic 20.0%
!!! TTGTTTTTTTATTTCTTACG+TGG + tig0028674:52914-52933 Msa1439000:three_prime_UTR 20.0%
!!! TGTTTTTTTATTTCTTACGT+GGG + tig0028674:52915-52934 Msa1439000:three_prime_UTR 20.0%
!! TATAAATTAACCAATGTGTT+TGG - tig0028674:52973-52992 None:intergenic 20.0%
!!! ATTGATTTTTTCATTTCGTA+AGG - tig0028674:51959-51978 None:intergenic 20.0%
!! TTACGAAATGAAAAAATCAA+TGG + tig0028674:51958-51977 Msa1439000:CDS 20.0%
!! CAACAAGTATTAATGAATTT+AGG - tig0028674:52194-52213 None:intergenic 20.0%
!! ATACAAAAAAAAGAAGAAGA+AGG - tig0028674:52238-52257 None:intergenic 20.0%
!!! TCAACTATTTTTTGTTACAT+TGG + tig0028674:52272-52291 Msa1439000:intron 20.0%
!! AGCAATCTAAAAATAAGTAA+GGG - tig0028674:52298-52317 None:intergenic 20.0%
!! AAGCAATCTAAAAATAAGTA+AGG - tig0028674:52299-52318 None:intergenic 20.0%
!!! TTATTTTTAGATTGCTTGAA+TGG + tig0028674:52302-52321 Msa1439000:intron 20.0%
!! CTCTAATGTAATTATATCTT+TGG - tig0028674:52730-52749 None:intergenic 20.0%
!!! TTGTTTTTTTATTTCTTACG+TGG + tig0028674:52914-52933 Msa1439000:three_prime_UTR 20.0%
!!! TGTTTTTTTATTTCTTACGT+GGG + tig0028674:52915-52934 Msa1439000:three_prime_UTR 20.0%
!! TATAAATTAACCAATGTGTT+TGG - tig0028674:52973-52992 None:intergenic 20.0%
! ATGAATGAAGTGATTGATTA+AGG - tig0028674:51888-51907 None:intergenic 25.0%
!! TTCATTAATACTTGTTGCAT+TGG + tig0028674:52197-52216 Msa1439000:intron 25.0%
!!! TATCAAATAATAGTGTTGGT+CGG - tig0028674:52518-52537 None:intergenic 25.0%
! GATGTATCAAATAATAGTGT+TGG - tig0028674:52522-52541 None:intergenic 25.0%
! GAGAAAATATTATATGCACT+AGG - tig0028674:52582-52601 None:intergenic 25.0%
!!! TTTCTCTTTCATTTTAATGG+TGG + tig0028674:52596-52615 Msa1439000:intron 25.0%
! GACACAATTCATAAATACTT+AGG - tig0028674:53181-53200 None:intergenic 25.0%
! TATTTATGAATTGTGTCAGT+TGG + tig0028674:53184-53203 Msa1439000:three_prime_UTR 25.0%
! ATGAATGAAGTGATTGATTA+AGG - tig0028674:51888-51907 None:intergenic 25.0%
!! TTCATTAATACTTGTTGCAT+TGG + tig0028674:52197-52216 Msa1439000:intron 25.0%
!!! TATCAAATAATAGTGTTGGT+CGG - tig0028674:52518-52537 None:intergenic 25.0%
! GATGTATCAAATAATAGTGT+TGG - tig0028674:52522-52541 None:intergenic 25.0%
! GAGAAAATATTATATGCACT+AGG - tig0028674:52582-52601 None:intergenic 25.0%
!!! TTTCTCTTTCATTTTAATGG+TGG + tig0028674:52596-52615 Msa1439000:intron 25.0%
! GACACAATTCATAAATACTT+AGG - tig0028674:53181-53200 None:intergenic 25.0%
! TATTTATGAATTGTGTCAGT+TGG + tig0028674:53184-53203 Msa1439000:three_prime_UTR 25.0%
AACTCAACAAAATGATGACT+AGG - tig0028674:51072-51091 None:intergenic 30.0%
! CATTTTGTTGAGTTTTGCAA+AGG + tig0028674:51078-51097 Msa1439000:intron 30.0%
TATTCAATGTGCTAAAGCAA+TGG + tig0028674:51495-51514 Msa1439000:CDS 30.0%
ATTCAATGTGCTAAAGCAAT+GGG + tig0028674:51496-51515 Msa1439000:CDS 30.0%
ACAATTCATAATTCCAATGC+AGG + tig0028674:51721-51740 Msa1439000:intron 30.0%
CAATTCATAATTCCAATGCA+GGG + tig0028674:51722-51741 Msa1439000:intron 30.0%
! ACAGATTTTTCTTCGAGAAT+AGG - tig0028674:51770-51789 None:intergenic 30.0%
TTCTCGAAGAAAAATCTGTT+TGG + tig0028674:51771-51790 Msa1439000:CDS 30.0%
TCTCGAAGAAAAATCTGTTT+GGG + tig0028674:51772-51791 Msa1439000:CDS 30.0%
AAAAAGAAGAAGAAGGACTT+GGG - tig0028674:52231-52250 None:intergenic 30.0%
AAAAAAGAAGAAGAAGGACT+TGG - tig0028674:52232-52251 None:intergenic 30.0%
TGCATTACTACATTTCCATT+GGG + tig0028674:52372-52391 Msa1439000:intron 30.0%
GGAATAAACCTGTAAGAATA+GGG - tig0028674:52484-52503 None:intergenic 30.0%
TGGAATAAACCTGTAAGAAT+AGG - tig0028674:52485-52504 None:intergenic 30.0%
ACAGGTTTATTCCATTCTAT+TGG + tig0028674:52491-52510 Msa1439000:intron 30.0%
CATGCCTATAGTTGATTATA+CGG + tig0028674:52624-52643 Msa1439000:intron 30.0%
ATGCCTATAGTTGATTATAC+GGG + tig0028674:52625-52644 Msa1439000:intron 30.0%
TTTCCCGTATAATCAACTAT+AGG - tig0028674:52631-52650 None:intergenic 30.0%
ATTATACGGGAAATATTTGC+AGG + tig0028674:52638-52657 Msa1439000:intron 30.0%
! TTACATTAGAGAAGTTTTGC+AGG + tig0028674:52739-52758 Msa1439000:CDS 30.0%
GAACATATTGAAGAAGTTGA+AGG + tig0028674:52772-52791 Msa1439000:exon 30.0%
AATATCTGATTGTTTCGACT+GGG - tig0028674:52807-52826 None:intergenic 30.0%
AAATATCTGATTGTTTCGAC+TGG - tig0028674:52808-52827 None:intergenic 30.0%
! ATGATTTGTAATTGCATACG+AGG + tig0028674:52839-52858 Msa1439000:three_prime_UTR 30.0%
TTATTCTTAAATACGCTTGC+CGG + tig0028674:52885-52904 Msa1439000:three_prime_UTR 30.0%
TTGTATTCATCCAAACACAT+TGG + tig0028674:52960-52979 Msa1439000:three_prime_UTR 30.0%
AACTCAACAAAATGATGACT+AGG - tig0028674:51072-51091 None:intergenic 30.0%
! CATTTTGTTGAGTTTTGCAA+AGG + tig0028674:51078-51097 Msa1439000:intron 30.0%
TATTCAATGTGCTAAAGCAA+TGG + tig0028674:51495-51514 Msa1439000:CDS 30.0%
ATTCAATGTGCTAAAGCAAT+GGG + tig0028674:51496-51515 Msa1439000:CDS 30.0%
ACAATTCATAATTCCAATGC+AGG + tig0028674:51721-51740 Msa1439000:intron 30.0%
CAATTCATAATTCCAATGCA+GGG + tig0028674:51722-51741 Msa1439000:intron 30.0%
! ACAGATTTTTCTTCGAGAAT+AGG - tig0028674:51770-51789 None:intergenic 30.0%
TTCTCGAAGAAAAATCTGTT+TGG + tig0028674:51771-51790 Msa1439000:CDS 30.0%
TCTCGAAGAAAAATCTGTTT+GGG + tig0028674:51772-51791 Msa1439000:CDS 30.0%
AAAAAGAAGAAGAAGGACTT+GGG - tig0028674:52231-52250 None:intergenic 30.0%
AAAAAAGAAGAAGAAGGACT+TGG - tig0028674:52232-52251 None:intergenic 30.0%
TGCATTACTACATTTCCATT+GGG + tig0028674:52372-52391 Msa1439000:intron 30.0%
GGAATAAACCTGTAAGAATA+GGG - tig0028674:52484-52503 None:intergenic 30.0%
TGGAATAAACCTGTAAGAAT+AGG - tig0028674:52485-52504 None:intergenic 30.0%
ACAGGTTTATTCCATTCTAT+TGG + tig0028674:52491-52510 Msa1439000:intron 30.0%
CATGCCTATAGTTGATTATA+CGG + tig0028674:52624-52643 Msa1439000:intron 30.0%
ATGCCTATAGTTGATTATAC+GGG + tig0028674:52625-52644 Msa1439000:intron 30.0%
TTTCCCGTATAATCAACTAT+AGG - tig0028674:52631-52650 None:intergenic 30.0%
ATTATACGGGAAATATTTGC+AGG + tig0028674:52638-52657 Msa1439000:intron 30.0%
! TTACATTAGAGAAGTTTTGC+AGG + tig0028674:52739-52758 Msa1439000:CDS 30.0%
GAACATATTGAAGAAGTTGA+AGG + tig0028674:52772-52791 Msa1439000:exon 30.0%
AATATCTGATTGTTTCGACT+GGG - tig0028674:52807-52826 None:intergenic 30.0%
AAATATCTGATTGTTTCGAC+TGG - tig0028674:52808-52827 None:intergenic 30.0%
! ATGATTTGTAATTGCATACG+AGG + tig0028674:52839-52858 Msa1439000:three_prime_UTR 30.0%
TTATTCTTAAATACGCTTGC+CGG + tig0028674:52885-52904 Msa1439000:three_prime_UTR 30.0%
TTGTATTCATCCAAACACAT+TGG + tig0028674:52960-52979 Msa1439000:three_prime_UTR 30.0%
TGATGACTAGGATAAAGAAC+AGG - tig0028674:51060-51079 None:intergenic 35.0%
! TTTGTTGAGTTTTGCAAAGG+TGG + tig0028674:51081-51100 Msa1439000:intron 35.0%
AGGAAGAAGGATTATAGAGT+GGG + tig0028674:51110-51129 Msa1439000:CDS 35.0%
ATAGCAATAGCAATTCAGAG+AGG + tig0028674:51162-51181 Msa1439000:CDS 35.0%
TAGCAATAGCAATTCAGAGA+GGG + tig0028674:51163-51182 Msa1439000:CDS 35.0%
ACTATTCCTGCTACATTAGT+TGG + tig0028674:51391-51410 Msa1439000:CDS 35.0%
AGCCTATCAAAACAGTTGAT+TGG + tig0028674:51455-51474 Msa1439000:intron 35.0%
GCCTATCAAAACAGTTGATT+GGG + tig0028674:51456-51475 Msa1439000:intron 35.0%
!!! TCCCAATCAACTGTTTTGAT+AGG - tig0028674:51460-51479 None:intergenic 35.0%
ATCAAAACAGTTGATTGGGA+AGG + tig0028674:51460-51479 Msa1439000:intron 35.0%
AATACTTGATCTCCATGAGT+GGG - tig0028674:51576-51595 None:intergenic 35.0%
CTTGCATGAAACCACATAAA+CGG - tig0028674:51645-51664 None:intergenic 35.0%
CTCGAAGAAAAATCTGTTTG+GGG + tig0028674:51773-51792 Msa1439000:CDS 35.0%
GGTAAACTTCTTACATTTGC+TGG + tig0028674:51979-51998 Msa1439000:CDS 35.0%
ACACAATGTAATCACCTCTT+GGG - tig0028674:52022-52041 None:intergenic 35.0%
CTGTAGTTACATTAGCATCT+TGG - tig0028674:52059-52078 None:intergenic 35.0%
ATTTGTCCACTCAAAAAAGC+GGG - tig0028674:52118-52137 None:intergenic 35.0%
CATTTGTCCACTCAAAAAAG+CGG - tig0028674:52119-52138 None:intergenic 35.0%
AAATGATGTTGCTGACAGAT+TGG + tig0028674:52134-52153 Msa1439000:CDS 35.0%
CTGCATTACTACATTTCCAT+TGG + tig0028674:52371-52390 Msa1439000:intron 35.0%
GCATTACTACATTTCCATTG+GGG + tig0028674:52373-52392 Msa1439000:intron 35.0%
! CTGTAAGAATAGGGTTTGTT+TGG - tig0028674:52475-52494 None:intergenic 35.0%
CAAACAAACCCTATTCTTAC+AGG + tig0028674:52473-52492 Msa1439000:intron 35.0%
ATATGCACTAGGAATCTGTT+TGG - tig0028674:52571-52590 None:intergenic 35.0%
CACTTCTCACTATGTACATT+TGG - tig0028674:53037-53056 None:intergenic 35.0%
TGATGACTAGGATAAAGAAC+AGG - tig0028674:51060-51079 None:intergenic 35.0%
! TTTGTTGAGTTTTGCAAAGG+TGG + tig0028674:51081-51100 Msa1439000:intron 35.0%
AGGAAGAAGGATTATAGAGT+GGG + tig0028674:51110-51129 Msa1439000:CDS 35.0%
ATAGCAATAGCAATTCAGAG+AGG + tig0028674:51162-51181 Msa1439000:CDS 35.0%
TAGCAATAGCAATTCAGAGA+GGG + tig0028674:51163-51182 Msa1439000:CDS 35.0%
ACTATTCCTGCTACATTAGT+TGG + tig0028674:51391-51410 Msa1439000:CDS 35.0%
AGCCTATCAAAACAGTTGAT+TGG + tig0028674:51455-51474 Msa1439000:intron 35.0%
GCCTATCAAAACAGTTGATT+GGG + tig0028674:51456-51475 Msa1439000:intron 35.0%
!!! TCCCAATCAACTGTTTTGAT+AGG - tig0028674:51460-51479 None:intergenic 35.0%
ATCAAAACAGTTGATTGGGA+AGG + tig0028674:51460-51479 Msa1439000:intron 35.0%
AATACTTGATCTCCATGAGT+GGG - tig0028674:51576-51595 None:intergenic 35.0%
CTTGCATGAAACCACATAAA+CGG - tig0028674:51645-51664 None:intergenic 35.0%
CTCGAAGAAAAATCTGTTTG+GGG + tig0028674:51773-51792 Msa1439000:CDS 35.0%
GGTAAACTTCTTACATTTGC+TGG + tig0028674:51979-51998 Msa1439000:CDS 35.0%
ACACAATGTAATCACCTCTT+GGG - tig0028674:52022-52041 None:intergenic 35.0%
CTGTAGTTACATTAGCATCT+TGG - tig0028674:52059-52078 None:intergenic 35.0%
ATTTGTCCACTCAAAAAAGC+GGG - tig0028674:52118-52137 None:intergenic 35.0%
CATTTGTCCACTCAAAAAAG+CGG - tig0028674:52119-52138 None:intergenic 35.0%
AAATGATGTTGCTGACAGAT+TGG + tig0028674:52134-52153 Msa1439000:CDS 35.0%
CTGCATTACTACATTTCCAT+TGG + tig0028674:52371-52390 Msa1439000:intron 35.0%
GCATTACTACATTTCCATTG+GGG + tig0028674:52373-52392 Msa1439000:intron 35.0%
! CTGTAAGAATAGGGTTTGTT+TGG - tig0028674:52475-52494 None:intergenic 35.0%
CAAACAAACCCTATTCTTAC+AGG + tig0028674:52473-52492 Msa1439000:intron 35.0%
ATATGCACTAGGAATCTGTT+TGG - tig0028674:52571-52590 None:intergenic 35.0%
CACTTCTCACTATGTACATT+TGG - tig0028674:53037-53056 None:intergenic 35.0%
! TTTTGCAAAGGTGGAAGAAG+AGG + tig0028674:51090-51109 Msa1439000:intron 40.0%
GAGGAAGAAGGATTATAGAG+TGG + tig0028674:51109-51128 Msa1439000:CDS 40.0%
! AGTATACTTGTTGGCCTAAC+AGG - tig0028674:51212-51231 None:intergenic 40.0%
TAGGCCAACAAGTATACTTG+TGG + tig0028674:51214-51233 Msa1439000:CDS 40.0%
CCAACCACAAGTATACTTGT+TGG - tig0028674:51221-51240 None:intergenic 40.0%
CCAACAAGTATACTTGTGGT+TGG + tig0028674:51218-51237 Msa1439000:CDS 40.0%
AATGTAGCAGGAATAGTCTC+AGG - tig0028674:51388-51407 None:intergenic 40.0%
TGAACTCCAACTAATGTAGC+AGG - tig0028674:51400-51419 None:intergenic 40.0%
! TTTTGATAGGCTCTTCAGGA+CGG - tig0028674:51447-51466 None:intergenic 40.0%
!!! ACTGTTTTGATAGGCTCTTC+AGG - tig0028674:51451-51470 None:intergenic 40.0%
ATGTTTGTCGCAGTTATGGA+TGG - tig0028674:51545-51564 None:intergenic 40.0%
CAATACTTGATCTCCATGAG+TGG - tig0028674:51577-51596 None:intergenic 40.0%
TGTGATTGAGTCCAGAATCA+CGG - tig0028674:51615-51634 None:intergenic 40.0%
CACATTGTCATCCGTTTATG+TGG + tig0028674:51631-51650 Msa1439000:CDS 40.0%
! ATTCCAATGCAGGGTCTTAT+TGG + tig0028674:51731-51750 Msa1439000:intron 40.0%
AGTATCCATGTAAGCGATTC+TGG - tig0028674:51813-51832 None:intergenic 40.0%
AATCGCTTACATGGATACTC+AGG + tig0028674:51814-51833 Msa1439000:CDS 40.0%
CTATATCCTAAAAGCAGCAG+AGG - tig0028674:51918-51937 None:intergenic 40.0%
CACACAATGTAATCACCTCT+TGG - tig0028674:52023-52042 None:intergenic 40.0%
AGGTGATTACATTGTGTGAG+AGG + tig0028674:52025-52044 Msa1439000:CDS 40.0%
CTGACGAGTGAGTCTTAAAA+CGG - tig0028674:52091-52110 None:intergenic 40.0%
!!! AGTTAACCCGCTTTTTTGAG+TGG + tig0028674:52109-52128 Msa1439000:CDS 40.0%
! TGACAGATTGGCATTTTCAG+AGG + tig0028674:52146-52165 Msa1439000:CDS 40.0%
! ACTACTAGAGCAGCTGATTT+GGG - tig0028674:52338-52357 None:intergenic 40.0%
TGGATTTGGGTAAAAGCCAA+TGG - tig0028674:52407-52426 None:intergenic 40.0%
! CACAGTTTTCTCTGTTCCAA+TGG + tig0028674:52674-52693 Msa1439000:CDS 40.0%
! AGTTTTCTCTGTTCCAATGG+CGG + tig0028674:52677-52696 Msa1439000:CDS 40.0%
TTGCATACGAGGTAATGTTG+TGG + tig0028674:52850-52869 Msa1439000:three_prime_UTR 40.0%
TGCATACGAGGTAATGTTGT+GGG + tig0028674:52851-52870 Msa1439000:three_prime_UTR 40.0%
TTCTTACGTGGGCTTACAAT+TGG + tig0028674:52926-52945 Msa1439000:three_prime_UTR 40.0%
! GTCTTTTAAGCATGCGATAC+AGG - tig0028674:53159-53178 None:intergenic 40.0%
! TTTTGCAAAGGTGGAAGAAG+AGG + tig0028674:51090-51109 Msa1439000:intron 40.0%
GAGGAAGAAGGATTATAGAG+TGG + tig0028674:51109-51128 Msa1439000:CDS 40.0%
! AGTATACTTGTTGGCCTAAC+AGG - tig0028674:51212-51231 None:intergenic 40.0%
TAGGCCAACAAGTATACTTG+TGG + tig0028674:51214-51233 Msa1439000:CDS 40.0%
CCAACCACAAGTATACTTGT+TGG - tig0028674:51221-51240 None:intergenic 40.0%
CCAACAAGTATACTTGTGGT+TGG + tig0028674:51218-51237 Msa1439000:CDS 40.0%
AATGTAGCAGGAATAGTCTC+AGG - tig0028674:51388-51407 None:intergenic 40.0%
TGAACTCCAACTAATGTAGC+AGG - tig0028674:51400-51419 None:intergenic 40.0%
! TTTTGATAGGCTCTTCAGGA+CGG - tig0028674:51447-51466 None:intergenic 40.0%
!!! ACTGTTTTGATAGGCTCTTC+AGG - tig0028674:51451-51470 None:intergenic 40.0%
ATGTTTGTCGCAGTTATGGA+TGG - tig0028674:51545-51564 None:intergenic 40.0%
CAATACTTGATCTCCATGAG+TGG - tig0028674:51577-51596 None:intergenic 40.0%
TGTGATTGAGTCCAGAATCA+CGG - tig0028674:51615-51634 None:intergenic 40.0%
CACATTGTCATCCGTTTATG+TGG + tig0028674:51631-51650 Msa1439000:CDS 40.0%
! ATTCCAATGCAGGGTCTTAT+TGG + tig0028674:51731-51750 Msa1439000:intron 40.0%
AGTATCCATGTAAGCGATTC+TGG - tig0028674:51813-51832 None:intergenic 40.0%
AATCGCTTACATGGATACTC+AGG + tig0028674:51814-51833 Msa1439000:CDS 40.0%
CTATATCCTAAAAGCAGCAG+AGG - tig0028674:51918-51937 None:intergenic 40.0%
CACACAATGTAATCACCTCT+TGG - tig0028674:52023-52042 None:intergenic 40.0%
AGGTGATTACATTGTGTGAG+AGG + tig0028674:52025-52044 Msa1439000:CDS 40.0%
CTGACGAGTGAGTCTTAAAA+CGG - tig0028674:52091-52110 None:intergenic 40.0%
!!! AGTTAACCCGCTTTTTTGAG+TGG + tig0028674:52109-52128 Msa1439000:CDS 40.0%
! TGACAGATTGGCATTTTCAG+AGG + tig0028674:52146-52165 Msa1439000:CDS 40.0%
! ACTACTAGAGCAGCTGATTT+GGG - tig0028674:52338-52357 None:intergenic 40.0%
TGGATTTGGGTAAAAGCCAA+TGG - tig0028674:52407-52426 None:intergenic 40.0%
! CACAGTTTTCTCTGTTCCAA+TGG + tig0028674:52674-52693 Msa1439000:CDS 40.0%
! AGTTTTCTCTGTTCCAATGG+CGG + tig0028674:52677-52696 Msa1439000:CDS 40.0%
TTGCATACGAGGTAATGTTG+TGG + tig0028674:52850-52869 Msa1439000:three_prime_UTR 40.0%
TGCATACGAGGTAATGTTGT+GGG + tig0028674:52851-52870 Msa1439000:three_prime_UTR 40.0%
TTCTTACGTGGGCTTACAAT+TGG + tig0028674:52926-52945 Msa1439000:three_prime_UTR 40.0%
! GTCTTTTAAGCATGCGATAC+AGG - tig0028674:53159-53178 None:intergenic 40.0%
AAGGTGGAAGAAGAGGAAGA+AGG + tig0028674:51097-51116 Msa1439000:intron 45.0%
TATACTTGTGGTTGGAGCCA+CGG + tig0028674:51226-51245 Msa1439000:CDS 45.0%
! CTTTGGGAAGGCAGATTGTT+CGG + tig0028674:51252-51271 Msa1439000:CDS 45.0%
! AGCTGACTTCCTTCGTGATT+GGG + tig0028674:51330-51349 Msa1439000:CDS 45.0%
CGAGAATAGGAACAGCATAC+TGG - tig0028674:51757-51776 None:intergenic 45.0%
TCCATGTAAGCGATTCTGGT+GGG - tig0028674:51809-51828 None:intergenic 45.0%
ATCCATGTAAGCGATTCTGG+TGG - tig0028674:51810-51829 None:intergenic 45.0%
TACATTGTGTGAGAGGCTTG+CGG + tig0028674:52032-52051 Msa1439000:CDS 45.0%
GTGAGTCTTAAAACGGAGAC+AGG - tig0028674:52084-52103 None:intergenic 45.0%
GACTACTAGAGCAGCTGATT+TGG - tig0028674:52339-52358 None:intergenic 45.0%
GGGTAAAAGCCAATGGCAAT+AGG - tig0028674:52400-52419 None:intergenic 45.0%
! CCATCGACATGAGTGGATTT+GGG - tig0028674:52420-52439 None:intergenic 45.0%
! TCCATCGACATGAGTGGATT+TGG - tig0028674:52421-52440 None:intergenic 45.0%
TTGATGTCCATCGACATGAG+TGG - tig0028674:52427-52446 None:intergenic 45.0%
TGTTGGTCGGACCAATAGAA+TGG - tig0028674:52505-52524 None:intergenic 45.0%
!! CTTTGGTATCGACACCAAGT+AGG - tig0028674:52713-52732 None:intergenic 45.0%
AAGGTGGAAGAAGAGGAAGA+AGG + tig0028674:51097-51116 Msa1439000:intron 45.0%
TATACTTGTGGTTGGAGCCA+CGG + tig0028674:51226-51245 Msa1439000:CDS 45.0%
! CTTTGGGAAGGCAGATTGTT+CGG + tig0028674:51252-51271 Msa1439000:CDS 45.0%
! AGCTGACTTCCTTCGTGATT+GGG + tig0028674:51330-51349 Msa1439000:CDS 45.0%
CGAGAATAGGAACAGCATAC+TGG - tig0028674:51757-51776 None:intergenic 45.0%
TCCATGTAAGCGATTCTGGT+GGG - tig0028674:51809-51828 None:intergenic 45.0%
ATCCATGTAAGCGATTCTGG+TGG - tig0028674:51810-51829 None:intergenic 45.0%
TACATTGTGTGAGAGGCTTG+CGG + tig0028674:52032-52051 Msa1439000:CDS 45.0%
GTGAGTCTTAAAACGGAGAC+AGG - tig0028674:52084-52103 None:intergenic 45.0%
GACTACTAGAGCAGCTGATT+TGG - tig0028674:52339-52358 None:intergenic 45.0%
GGGTAAAAGCCAATGGCAAT+AGG - tig0028674:52400-52419 None:intergenic 45.0%
! CCATCGACATGAGTGGATTT+GGG - tig0028674:52420-52439 None:intergenic 45.0%
! TCCATCGACATGAGTGGATT+TGG - tig0028674:52421-52440 None:intergenic 45.0%
TTGATGTCCATCGACATGAG+TGG - tig0028674:52427-52446 None:intergenic 45.0%
TGTTGGTCGGACCAATAGAA+TGG - tig0028674:52505-52524 None:intergenic 45.0%
!! CTTTGGTATCGACACCAAGT+AGG - tig0028674:52713-52732 None:intergenic 45.0%
!! GGCTGTTGGTAACCTCATCA+GGG - tig0028674:50998-51017 None:intergenic 50.0%
!! TGGCTGTTGGTAACCTCATC+AGG - tig0028674:50999-51018 None:intergenic 50.0%
TCAGAGAGGGCAGTGAATCT+TGG + tig0028674:51176-51195 Msa1439000:CDS 50.0%
ATACTTGTGGTTGGAGCCAC+GGG + tig0028674:51227-51246 Msa1439000:CDS 50.0%
CAATCACGAAGGAAGTCAGC+TGG - tig0028674:51331-51350 None:intergenic 50.0%
! CAGCTGACTTCCTTCGTGAT+TGG + tig0028674:51329-51348 Msa1439000:CDS 50.0%
! GCTGACTTCCTTCGTGATTG+GGG + tig0028674:51331-51350 Msa1439000:CDS 50.0%
! ACTGTTATTGACTGCGCCAC+TGG + tig0028674:51421-51440 Msa1439000:CDS 50.0%
CGGGATGTTTGTCGCAGTTA+TGG - tig0028674:51549-51568 None:intergenic 50.0%
TAACTGCGACAAACATCCCG+AGG + tig0028674:51549-51568 Msa1439000:CDS 50.0%
GAGAACTTCCTCCGTGATTC+TGG + tig0028674:51601-51620 Msa1439000:CDS 50.0%
GATTGAGTCCAGAATCACGG+AGG - tig0028674:51612-51631 None:intergenic 50.0%
TGGCCAATAAGACCCTGCAT+TGG - tig0028674:51737-51756 None:intergenic 50.0%
CATGTAAGCGATTCTGGTGG+GGG - tig0028674:51807-51826 None:intergenic 50.0%
CCATGTAAGCGATTCTGGTG+GGG - tig0028674:51808-51827 None:intergenic 50.0%
!!! TGTCTGCCTCTGCTGCTTTT+AGG + tig0028674:51909-51928 Msa1439000:intron 50.0%
ACATTGTGTGAGAGGCTTGC+GGG + tig0028674:52033-52052 Msa1439000:CDS 50.0%
CAATGGCAATAGGTCCCCAA+TGG - tig0028674:52390-52409 None:intergenic 50.0%
CATTGGGGACCTATTGCCAT+TGG + tig0028674:52388-52407 Msa1439000:intron 50.0%
CCCAAATCCACTCATGTCGA+TGG + tig0028674:52417-52436 Msa1439000:intron 50.0%
AGGTTGTATGTCTCCGCCAT+TGG - tig0028674:52693-52712 None:intergenic 50.0%
GCGGAGACATACAACCTACT+TGG + tig0028674:52696-52715 Msa1439000:CDS 50.0%
!! GGCTGTTGGTAACCTCATCA+GGG - tig0028674:50998-51017 None:intergenic 50.0%
!! TGGCTGTTGGTAACCTCATC+AGG - tig0028674:50999-51018 None:intergenic 50.0%
TCAGAGAGGGCAGTGAATCT+TGG + tig0028674:51176-51195 Msa1439000:CDS 50.0%
ATACTTGTGGTTGGAGCCAC+GGG + tig0028674:51227-51246 Msa1439000:CDS 50.0%
CAATCACGAAGGAAGTCAGC+TGG - tig0028674:51331-51350 None:intergenic 50.0%
! CAGCTGACTTCCTTCGTGAT+TGG + tig0028674:51329-51348 Msa1439000:CDS 50.0%
! GCTGACTTCCTTCGTGATTG+GGG + tig0028674:51331-51350 Msa1439000:CDS 50.0%
! ACTGTTATTGACTGCGCCAC+TGG + tig0028674:51421-51440 Msa1439000:CDS 50.0%
CGGGATGTTTGTCGCAGTTA+TGG - tig0028674:51549-51568 None:intergenic 50.0%
TAACTGCGACAAACATCCCG+AGG + tig0028674:51549-51568 Msa1439000:CDS 50.0%
GAGAACTTCCTCCGTGATTC+TGG + tig0028674:51601-51620 Msa1439000:CDS 50.0%
GATTGAGTCCAGAATCACGG+AGG - tig0028674:51612-51631 None:intergenic 50.0%
TGGCCAATAAGACCCTGCAT+TGG - tig0028674:51737-51756 None:intergenic 50.0%
CATGTAAGCGATTCTGGTGG+GGG - tig0028674:51807-51826 None:intergenic 50.0%
CCATGTAAGCGATTCTGGTG+GGG - tig0028674:51808-51827 None:intergenic 50.0%
!!! TGTCTGCCTCTGCTGCTTTT+AGG + tig0028674:51909-51928 Msa1439000:intron 50.0%
ACATTGTGTGAGAGGCTTGC+GGG + tig0028674:52033-52052 Msa1439000:CDS 50.0%
CAATGGCAATAGGTCCCCAA+TGG - tig0028674:52390-52409 None:intergenic 50.0%
CATTGGGGACCTATTGCCAT+TGG + tig0028674:52388-52407 Msa1439000:intron 50.0%
CCCAAATCCACTCATGTCGA+TGG + tig0028674:52417-52436 Msa1439000:intron 50.0%
AGGTTGTATGTCTCCGCCAT+TGG - tig0028674:52693-52712 None:intergenic 50.0%
GCGGAGACATACAACCTACT+TGG + tig0028674:52696-52715 Msa1439000:CDS 50.0%
AGGTTACCAACAGCCACACC+TGG + tig0028674:51003-51022 Msa1439000:CDS 55.0%
TACCAACAGCCACACCTGGT+AGG + tig0028674:51007-51026 Msa1439000:CDS 55.0%
ACCAACAGCCACACCTGGTA+GGG + tig0028674:51008-51027 Msa1439000:CDS 55.0%
AGGGCAGTGAATCTTGGACC+AGG + tig0028674:51182-51201 Msa1439000:CDS 55.0%
GGGCAGTGAATCTTGGACCA+GGG + tig0028674:51183-51202 Msa1439000:CDS 55.0%
TTGGACCAGGGACACCTGTT+AGG + tig0028674:51195-51214 Msa1439000:CDS 55.0%
TACTTGTGGTTGGAGCCACG+GGG + tig0028674:51228-51247 Msa1439000:CDS 55.0%
TGGGAAGGCAGATTGTTCGG+AGG + tig0028674:51255-51274 Msa1439000:CDS 55.0%
GGGAAGGCAGATTGTTCGGA+GGG + tig0028674:51256-51275 Msa1439000:CDS 55.0%
TGGACGAAGGATACGACGTC+CGG + tig0028674:51282-51301 Msa1439000:CDS 55.0%
TACGACGTCCGGTGTCTGTA+AGG + tig0028674:51293-51312 Msa1439000:intron 55.0%
CAGTTGCTCCCCAATCACGA+AGG - tig0028674:51342-51361 None:intergenic 55.0%
ATCTCCATGAGTGGGACCTC+GGG - tig0028674:51568-51587 None:intergenic 55.0%
GATCTCCATGAGTGGGACCT+CGG - tig0028674:51569-51588 None:intergenic 55.0%
CCCCACCAGAATCGCTTACA+TGG + tig0028674:51805-51824 Msa1439000:CDS 55.0%
AGGTTACCAACAGCCACACC+TGG + tig0028674:51003-51022 Msa1439000:CDS 55.0%
TACCAACAGCCACACCTGGT+AGG + tig0028674:51007-51026 Msa1439000:CDS 55.0%
ACCAACAGCCACACCTGGTA+GGG + tig0028674:51008-51027 Msa1439000:CDS 55.0%
AGGGCAGTGAATCTTGGACC+AGG + tig0028674:51182-51201 Msa1439000:CDS 55.0%
GGGCAGTGAATCTTGGACCA+GGG + tig0028674:51183-51202 Msa1439000:CDS 55.0%
TTGGACCAGGGACACCTGTT+AGG + tig0028674:51195-51214 Msa1439000:CDS 55.0%
TACTTGTGGTTGGAGCCACG+GGG + tig0028674:51228-51247 Msa1439000:CDS 55.0%
TGGGAAGGCAGATTGTTCGG+AGG + tig0028674:51255-51274 Msa1439000:CDS 55.0%
GGGAAGGCAGATTGTTCGGA+GGG + tig0028674:51256-51275 Msa1439000:CDS 55.0%
TGGACGAAGGATACGACGTC+CGG + tig0028674:51282-51301 Msa1439000:CDS 55.0%
TACGACGTCCGGTGTCTGTA+AGG + tig0028674:51293-51312 Msa1439000:intron 55.0%
CAGTTGCTCCCCAATCACGA+AGG - tig0028674:51342-51361 None:intergenic 55.0%
ATCTCCATGAGTGGGACCTC+GGG - tig0028674:51568-51587 None:intergenic 55.0%
GATCTCCATGAGTGGGACCT+CGG - tig0028674:51569-51588 None:intergenic 55.0%
CCCCACCAGAATCGCTTACA+TGG + tig0028674:51805-51824 Msa1439000:CDS 55.0%
ACCCTACCAGGTGTGGCTGT+TGG - tig0028674:51012-51031 None:intergenic 60.0%
AACAGCCACACCTGGTAGGG+TGG + tig0028674:51011-51030 Msa1439000:CDS 60.0%
GTCTTCGTCACCACCCTACC+AGG - tig0028674:51024-51043 None:intergenic 60.0%
! GGTGGTGACGAAGACGAGAG+AGG + tig0028674:51029-51048 Msa1439000:CDS 60.0%
! GTTGGCCTAACAGGTGTCCC+TGG - tig0028674:51203-51222 None:intergenic 60.0%
GTTGGAGCCACGGGGACTTT+GGG + tig0028674:51236-51255 Msa1439000:CDS 60.0%
! GCAGATTGTTCGGAGGGCAC+TGG + tig0028674:51262-51281 Msa1439000:CDS 60.0%
AAGTCAGCTGGAGCAGGCCT+CGG - tig0028674:51319-51338 None:intergenic 60.0%
CGAAGGAAGTCAGCTGGAGC+AGG - tig0028674:51325-51344 None:intergenic 60.0%
ACATCCCGAGGTCCCACTCA+TGG + tig0028674:51561-51580 Msa1439000:CDS 60.0%
! CATTTGCTGGTCCTCGTGCG+TGG + tig0028674:51992-52011 Msa1439000:CDS 60.0%
TCTTGGGTAGTCCACGCACG+AGG - tig0028674:52006-52025 None:intergenic 60.0%
! TCGTGCGTGGACTACCCAAG+AGG + tig0028674:52005-52024 Msa1439000:CDS 60.0%
ACCCTACCAGGTGTGGCTGT+TGG - tig0028674:51012-51031 None:intergenic 60.0%
AACAGCCACACCTGGTAGGG+TGG + tig0028674:51011-51030 Msa1439000:CDS 60.0%
GTCTTCGTCACCACCCTACC+AGG - tig0028674:51024-51043 None:intergenic 60.0%
! GGTGGTGACGAAGACGAGAG+AGG + tig0028674:51029-51048 Msa1439000:CDS 60.0%
! GTTGGCCTAACAGGTGTCCC+TGG - tig0028674:51203-51222 None:intergenic 60.0%
GTTGGAGCCACGGGGACTTT+GGG + tig0028674:51236-51255 Msa1439000:CDS 60.0%
! GCAGATTGTTCGGAGGGCAC+TGG + tig0028674:51262-51281 Msa1439000:CDS 60.0%
AAGTCAGCTGGAGCAGGCCT+CGG - tig0028674:51319-51338 None:intergenic 60.0%
CGAAGGAAGTCAGCTGGAGC+AGG - tig0028674:51325-51344 None:intergenic 60.0%
ACATCCCGAGGTCCCACTCA+TGG + tig0028674:51561-51580 Msa1439000:CDS 60.0%
! CATTTGCTGGTCCTCGTGCG+TGG + tig0028674:51992-52011 Msa1439000:CDS 60.0%
TCTTGGGTAGTCCACGCACG+AGG - tig0028674:52006-52025 None:intergenic 60.0%
! TCGTGCGTGGACTACCCAAG+AGG + tig0028674:52005-52024 Msa1439000:CDS 60.0%
CGTCACCACCCTACCAGGTG+TGG - tig0028674:51019-51038 None:intergenic 65.0%
GGTTGGAGCCACGGGGACTT+TGG + tig0028674:51235-51254 Msa1439000:CDS 65.0%
! GAGCCACGGGGACTTTGGGA+AGG + tig0028674:51240-51259 Msa1439000:CDS 65.0%
CTGCCTTCCCAAAGTCCCCG+TGG - tig0028674:51246-51265 None:intergenic 65.0%
!! GTTCGGAGGGCACTGGACGA+AGG + tig0028674:51269-51288 Msa1439000:CDS 65.0%
GTCCGGTGTCTGTAAGGCCG+AGG + tig0028674:51299-51318 Msa1439000:intron 65.0%
GGCCTCGGCCTTACAGACAC+CGG - tig0028674:51304-51323 None:intergenic 65.0%
AGGCTCTTCAGGACGGCCAG+TGG - tig0028674:51440-51459 None:intergenic 65.0%
CGTCACCACCCTACCAGGTG+TGG - tig0028674:51019-51038 None:intergenic 65.0%
GGTTGGAGCCACGGGGACTT+TGG + tig0028674:51235-51254 Msa1439000:CDS 65.0%
! GAGCCACGGGGACTTTGGGA+AGG + tig0028674:51240-51259 Msa1439000:CDS 65.0%
CTGCCTTCCCAAAGTCCCCG+TGG - tig0028674:51246-51265 None:intergenic 65.0%
!! GTTCGGAGGGCACTGGACGA+AGG + tig0028674:51269-51288 Msa1439000:CDS 65.0%
GTCCGGTGTCTGTAAGGCCG+AGG + tig0028674:51299-51318 Msa1439000:intron 65.0%
GGCCTCGGCCTTACAGACAC+CGG - tig0028674:51304-51323 None:intergenic 65.0%
AGGCTCTTCAGGACGGCCAG+TGG - tig0028674:51440-51459 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0028674 gene 50988 53270 50988 ID=Msa1439000;Name=Msa1439000
tig0028674 mRNA 50988 53270 50988 ID=Msa1439000-mRNA-1;Parent=Msa1439000;Name=Msa1439000-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.5|0.42|1|1|1|7|488|356
tig0028674 exon 50988 51088 50988 ID=Msa1439000-mRNA-1:exon:11522;Parent=Msa1439000-mRNA-1
tig0028674 exon 51100 51303 51100 ID=Msa1439000-mRNA-1:exon:11523;Parent=Msa1439000-mRNA-1
tig0028674 exon 51315 51445 51315 ID=Msa1439000-mRNA-1:exon:11524;Parent=Msa1439000-mRNA-1
tig0028674 exon 51482 51663 51482 ID=Msa1439000-mRNA-1:exon:11525;Parent=Msa1439000-mRNA-1
tig0028674 exon 51743 51835 51743 ID=Msa1439000-mRNA-1:exon:11526;Parent=Msa1439000-mRNA-1
tig0028674 exon 51931 52167 51931 ID=Msa1439000-mRNA-1:exon:11527;Parent=Msa1439000-mRNA-1
tig0028674 exon 52660 53270 52660 ID=Msa1439000-mRNA-1:exon:11528;Parent=Msa1439000-mRNA-1
tig0028674 CDS 50988 51088 50988 ID=Msa1439000-mRNA-1:cds;Parent=Msa1439000-mRNA-1
tig0028674 CDS 51100 51303 51100 ID=Msa1439000-mRNA-1:cds;Parent=Msa1439000-mRNA-1
tig0028674 CDS 51315 51445 51315 ID=Msa1439000-mRNA-1:cds;Parent=Msa1439000-mRNA-1
tig0028674 CDS 51482 51663 51482 ID=Msa1439000-mRNA-1:cds;Parent=Msa1439000-mRNA-1
tig0028674 CDS 51743 51835 51743 ID=Msa1439000-mRNA-1:cds;Parent=Msa1439000-mRNA-1
tig0028674 CDS 51931 52167 51931 ID=Msa1439000-mRNA-1:cds;Parent=Msa1439000-mRNA-1
tig0028674 CDS 52660 52782 52660 ID=Msa1439000-mRNA-1:cds;Parent=Msa1439000-mRNA-1
tig0028674 three_prime_UTR 52783 53270 52783 ID=Msa1439000-mRNA-1:three_prime_utr;Parent=Msa1439000-mRNA-1
Gene Sequence

>Msa1439000

ATGGCGACCCTGATGAGGTTACCAACAGCCACACCTGGTAGGGTGGTGACGAAGACGAGAGAGGCATTTCCTGTTCTTTATCCTAGTCATCATTTTGTTGAGTGGAAGAAGAGGAAGAAGGATTATAGAGTGGGAGTGAAATGCAATATCAACAGCAATAGCAATAGCAATAGCAATTCAGAGAGGGCAGTGAATCTTGGACCAGGGACACCTGTTAGGCCAACAAGTATACTTGTGGTTGGAGCCACGGGGACTTTGGGAAGGCAGATTGTTCGGAGGGCACTGGACGAAGGATACGACGTCCGGCCGAGGCCTGCTCCAGCTGACTTCCTTCGTGATTGGGGAGCAACTGTTGTGAATGCTGATCTTAGTAAACCTGAGACTATTCCTGCTACATTAGTTGGAGTTCATACTGTTATTGACTGCGCCACTGGCCGTAAAGTTGCTCTTATTCAATGTGCTAAAGCAATGGGTATTCAGAAATATGTTTTCTATTCCATCCATAACTGCGACAAACATCCCGAGGTCCCACTCATGGAGATCAAGTATTGCACTGAGAACTTCCTCCGTGATTCTGGACTCAATCACATTGTCATCCGTTTATGTGGTTTCATGCAAGGTCTTATTGGCCAGTATGCTGTTCCTATTCTCGAAGAAAAATCTGTTTGGGGAACTGACGCCCCCACCAGAATCGCTTACATGGATACTCAGGATATAGCTCGCTTGACTTTTATAGCCTTACGAAATGAAAAAATCAATGGTAAACTTCTTACATTTGCTGGTCCTCGTGCGTGGACTACCCAAGAGGTGATTACATTGTGTGAGAGGCTTGCGGGCCAAGATGCTAATGTAACTACAGTTCCTGTCTCCGTTTTAAGACTCACTCGTCAGTTAACCCGCTTTTTTGAGTGGACAAATGATGTTGCTGACAGATTGGCATTTTCAGAGGTGCTTACAAGTGACACAGTTTTCTCTGTTCCAATGGCGGAGACATACAACCTACTTGGTGTCGATACCAAAGATATAATTACATTAGAGAAGTTTTGCAGGACTACTTCACGAACATATTGA

Protein sequence

>Msa1439000

MATLMRLPTATPGRVVTKTREAFPVLYPSHHFVEWKKRKKDYRVGVKCNINSNSNSNSNSERAVNLGPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRPRPAPADFLRDWGATVVNADLSKPETIPATLVGVHTVIDCATGRKVALIQCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKYCTENFLRDSGLNHIVIRLCGFMQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNEKINGKLLTFAGPRAWTTQEVITLCERLAGQDANVTTVPVSVLRLTRQLTRFFEWTNDVADRLAFSEVLTSDTVFSVPMAETYNLLGVDTKDIITLEKFCRTTSRTY*