AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0121480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121480 MtrunA17_Chr1g0180531 90.377 239 12 4 1 231 1 236 1.68e-153 426
Msa0121480 MtrunA17_Chr6g0463871 93.750 48 3 0 130 177 1 48 7.92e-29 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121480 AT2G36895.2 60.905 243 71 6 1 231 1 231 6.87e-98 285
Msa0121480 AT2G36895.1 60.656 244 71 7 1 231 1 232 4.34e-96 280
Msa0121480 AT2G36895.3 54.613 271 71 8 1 231 1 259 5.14e-90 266

Find 79 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCCAGGGACTTGATA+TGG 0.196375 1_3:-47317421 Msa0121480:intron
TAATTCATGAATGATTAATT+TGG 0.227552 1_3:+47319219 None:intergenic
CTCTCTTTCGCTTTCTTCAA+TGG 0.255026 1_3:-47319140 Msa0121480:exon
GGAGGAGGAATGAGTTGCTT+TGG 0.291316 1_3:+47318964 None:intergenic
ACTTTCTGTAGATATATTCT+AGG 0.300646 1_3:-47315458 Msa0121480:exon
GAGGAGGAATGAGTTGCTTT+GGG 0.321300 1_3:+47318965 None:intergenic
CTGTTGCAGTACCATTACTA+TGG 0.322047 1_3:-47315563 Msa0121480:CDS
AAGAGAATCTGAATCTGAAT+AGG 0.338244 1_3:+47319104 None:intergenic
CCACAATAAATTGTTGGTTC+TGG 0.338888 1_3:-47315292 Msa0121480:three_prime_UTR
GAACCATGTTGCCTCCGATT+TGG 0.352718 1_3:+47318259 None:intergenic
GTTGTTGAATGAGAAAGATT+TGG 0.354628 1_3:+47319045 None:intergenic
TGAGAGGTAGAAGGAGCAAC+AGG 0.364803 1_3:+47319010 None:intergenic
CCTGGTGTTAAATTTCCATT+TGG 0.375756 1_3:-47315215 Msa0121480:three_prime_UTR
ATCCAATTGTCCATTCTATC+TGG 0.389015 1_3:-47315315 Msa0121480:three_prime_UTR
TTGTTGAATGAGAAAGATTT+GGG 0.395860 1_3:+47319046 None:intergenic
GACTTCTCACAGAAATTCAA+TGG 0.398474 1_3:-47318326 Msa0121480:intron
TTTATTGTGGCCAGATAGAA+TGG 0.413219 1_3:+47315305 None:intergenic
ACCTAGACAAAGGCCTTGAT+TGG 0.415493 1_3:+47317541 None:intergenic
AGAAATTCAATGGGTTTCTC+AGG 0.422443 1_3:-47318316 Msa0121480:CDS
ATCTGGCCACAATAAATTGT+TGG 0.424160 1_3:-47315298 Msa0121480:three_prime_UTR
TCTTTCCAGGGACTTGATAT+GGG 0.428716 1_3:-47317420 Msa0121480:intron
CTCGAAGGAATCGTTGTTGT+TGG 0.431175 1_3:+47318943 None:intergenic
TATACAGAGTGCACAAAGAA+TGG 0.442953 1_3:+47315427 None:intergenic
CCTTGGTCCGACGATGATAA+CGG 0.451977 1_3:-47318914 Msa0121480:intron
AGAGAATCTGAATCTGAATA+GGG 0.461673 1_3:+47319105 None:intergenic
AATGAGAAAGATTTGGGAGA+AGG 0.464918 1_3:+47319052 None:intergenic
AGACGAGGATGAGAGGTAGA+AGG 0.468888 1_3:+47319001 None:intergenic
TGGAGGAGGAATTGTAGAGA+AGG 0.473722 1_3:-47315496 Msa0121480:CDS
GGCCAGATAGAATGGACAAT+TGG 0.475499 1_3:+47315313 None:intergenic
AGGCGAAGTGTCTCAGAAGC+TGG 0.476255 1_3:+47315531 None:intergenic
TTTGGGAGAAGGAGAAATGA+TGG 0.477525 1_3:+47319063 None:intergenic
GAATTGTAGAGAAGGTCTAT+TGG 0.491347 1_3:-47315488 Msa0121480:CDS
CAGTCCGTCAGTGGTGAAGA+AGG 0.505748 1_3:+47318284 None:intergenic
ATTCCTTCGAGTTCTTCCCT+TGG 0.517845 1_3:-47318931 Msa0121480:CDS
TTTACCTTCTTCACCACTGA+CGG 0.518009 1_3:-47318288 Msa0121480:CDS
ACTTCTCACAGAAATTCAAT+GGG 0.519019 1_3:-47318325 Msa0121480:intron
CCTAGACAAAGGCCTTGATT+GGG 0.524442 1_3:+47317542 None:intergenic
GGAATCGTTGTTGTTGGAGG+AGG 0.526523 1_3:+47318949 None:intergenic
AACTACATGGATCCCAATCA+AGG 0.527063 1_3:-47317554 Msa0121480:CDS
TGTTGCAGTACCATTACTAT+GGG 0.529593 1_3:-47315562 Msa0121480:CDS
CGTTATCATCGTCGGACCAA+GGG 0.543998 1_3:+47318915 None:intergenic
GAAGGAATCGTTGTTGTTGG+AGG 0.547888 1_3:+47318946 None:intergenic
ACTGACGGACTGATCCAAAT+CGG 0.552411 1_3:-47318273 Msa0121480:CDS
GGAGGAATGAGTTGCTTTGG+GGG 0.553111 1_3:+47318967 None:intergenic
CCGTTATCATCGTCGGACCA+AGG 0.555351 1_3:+47318914 None:intergenic
CGCCTAGCTGTTAAAAGTGG+AGG 0.555989 1_3:-47315513 Msa0121480:CDS
CCCAATCAAGGCCTTTGTCT+AGG 0.561143 1_3:-47317542 Msa0121480:CDS
CCAAATGGAAATTTAACACC+AGG 0.562686 1_3:+47315215 None:intergenic
ACAGGTGATTGCCGCAGAGA+AGG 0.564927 1_3:-47315622 Msa0121480:intron
CTCATGTTTCACAGAAGCAA+GGG 0.567711 1_3:-47317619 Msa0121480:intron
GTATCAAGAGAGCAACTACA+TGG 0.569947 1_3:-47317567 Msa0121480:CDS
CTAGCTGTTAAAAGTGGAGG+AGG 0.572051 1_3:-47315510 Msa0121480:CDS
CTTCGCCTAGCTGTTAAAAG+TGG 0.572780 1_3:-47315516 Msa0121480:CDS
ACGAAGAAGACGAGGATGAG+AGG 0.584511 1_3:+47318994 None:intergenic
TCTCATGTTTCACAGAAGCA+AGG 0.584656 1_3:-47317620 Msa0121480:intron
AGGAGGAATGAGTTGCTTTG+GGG 0.585072 1_3:+47318966 None:intergenic
ATGATGGAATTGTTGAATGG+TGG 0.588369 1_3:+47319079 None:intergenic
AATATATGATATATCTGCCC+TGG 0.593288 1_3:-47315233 Msa0121480:three_prime_UTR
TCAGAAGACTTGACGCGACG+AGG 0.594267 1_3:+47318237 None:intergenic
GGAGGAACGCCCCATAGTAA+TGG 0.596217 1_3:+47315552 None:intergenic
TAATGGTACTGCAACAGTCA+TGG 0.597221 1_3:+47315569 None:intergenic
GAAATGATGGAATTGTTGAA+TGG 0.598643 1_3:+47319076 None:intergenic
GCCGCAGAGAAGGCAAGCAG+AGG 0.602339 1_3:-47315612 Msa0121480:CDS
GATCCAAATCGGAGGCAACA+TGG 0.621305 1_3:-47318262 Msa0121480:CDS
GAGCGAACCGTTATCATCGT+CGG 0.621641 1_3:+47318907 None:intergenic
GAATTACTTATATATACGTG+TGG 0.626562 1_3:-47319202 Msa0121480:five_prime_UTR
CCAGAACCAACAATTTATTG+TGG 0.629526 1_3:+47315292 None:intergenic
CAAAGAGTGCACCTAGACAA+AGG 0.629542 1_3:+47317531 None:intergenic
GATTGAGATGCTTAGTGATG+TGG 0.643100 1_3:-47317364 Msa0121480:CDS
GATTTGGATCAGTCCGTCAG+TGG 0.643323 1_3:+47318275 None:intergenic
CACTAAGCATCTCAATCGAG+CGG 0.647776 1_3:+47317370 None:intergenic
GGACCAAGGGAAGAACTCGA+AGG 0.665595 1_3:+47318928 None:intergenic
GAGAGGTAGAAGGAGCAACA+GGG 0.668927 1_3:+47319011 None:intergenic
GGGGAGAAACGAAGAAGACG+AGG 0.670848 1_3:+47318986 None:intergenic
CGAAGTGTCTCAGAAGCTGG+AGG 0.672033 1_3:+47315534 None:intergenic
GACGGACTGATCCAAATCGG+AGG 0.686153 1_3:-47318270 Msa0121480:CDS
ACCTCTGCTTGCCTTCTCTG+CGG 0.691246 1_3:+47315611 None:intergenic
CAAATGGAAATTTAACACCA+GGG 0.691425 1_3:+47315216 None:intergenic
GTTGCAGTACCATTACTATG+GGG 0.768312 1_3:-47315561 Msa0121480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTAAGTAAAGATTTT+GGG + chr1_3:47316344-47316363 None:intergenic 10.0%
!!! TTTATTTTAAGTAAAGATTT+TGG + chr1_3:47316345-47316364 None:intergenic 10.0%
!! AATCTTTACTTAAAATAAAA+TGG - chr1_3:47316346-47316365 Msa0121480:intron 10.0%
!! TAATTCATGAATGATTAATT+TGG + chr1_3:47315224-47315243 None:intergenic 15.0%
!!! TGCTTTTATAATTTAAAGAA+TGG - chr1_3:47315924-47315943 Msa0121480:intron 15.0%
!!! TAAATTTCAACATATGTTTT+GGG + chr1_3:47316475-47316494 None:intergenic 15.0%
!!! TTAAATTTCAACATATGTTT+TGG + chr1_3:47316476-47316495 None:intergenic 15.0%
!!! ATGTTGAAATTTAACTTTAT+TGG - chr1_3:47316482-47316501 Msa0121480:intron 15.0%
!!! AAATGTAAATTTTTGTTTTC+TGG - chr1_3:47317795-47317814 Msa0121480:intron 15.0%
!!! AATGTAAATTTTTGTTTTCT+GGG - chr1_3:47317796-47317815 Msa0121480:intron 15.0%
!! AATGTGAAAAATTTGAGAAA+TGG + chr1_3:47315270-47315289 None:intergenic 20.0%
!! ACATAAAAAAAACTATCAGT+AGG + chr1_3:47316255-47316274 None:intergenic 20.0%
!! TTTCTTCAATTGAATACAAA+AGG + chr1_3:47316441-47316460 None:intergenic 20.0%
!! TTAAAAACTTAAGCTGTTAT+TGG - chr1_3:47316558-47316577 Msa0121480:intron 20.0%
!!! AATGGATTTAAACAATAAGA+TGG + chr1_3:47316763-47316782 None:intergenic 20.0%
!!! TTCTTTTAGCTATAAAACAA+TGG - chr1_3:47317155-47317174 Msa0121480:intron 20.0%
!!! TTTTAATGAAACCTGTATTT+TGG - chr1_3:47317296-47317315 Msa0121480:intron 20.0%
!!! TTTAATGAAACCTGTATTTT+GGG - chr1_3:47317297-47317316 Msa0121480:intron 20.0%
!! AAACATAATGAAATTGTGAA+AGG + chr1_3:47317562-47317581 None:intergenic 20.0%
!!! TACGAAATCACTAAAATTTT+AGG - chr1_3:47317685-47317704 Msa0121480:intron 20.0%
!! ATAGAGTATAACATAAAATC+TGG - chr1_3:47317976-47317995 Msa0121480:intron 20.0%
!!! GAATTAGCGTAATTTTTTTT+TGG - chr1_3:47318068-47318087 Msa0121480:intron 20.0%
!!! ATATTATTTTAGGCTAATTC+TGG + chr1_3:47318099-47318118 None:intergenic 20.0%
!!! AAAATGTTTTCAACATAGTA+AGG + chr1_3:47318130-47318149 None:intergenic 20.0%
!! ATAATTCAAATTCCTGTAAT+GGG + chr1_3:47318467-47318486 None:intergenic 20.0%
!! AAGATTAAGATAATTAGCTA+GGG + chr1_3:47318547-47318566 None:intergenic 20.0%
!! TAAGATTAAGATAATTAGCT+AGG + chr1_3:47318548-47318567 None:intergenic 20.0%
!!! CCATATAAAATTAGTTCTAA+TGG + chr1_3:47318795-47318814 None:intergenic 20.0%
!!! CCATTAGAACTAATTTTATA+TGG - chr1_3:47318792-47318811 Msa0121480:intron 20.0%
! GAATTACTTATATATACGTG+TGG - chr1_3:47315238-47315257 Msa0121480:three_prime_UTR 25.0%
! TTGTTGAATGAGAAAGATTT+GGG + chr1_3:47315397-47315416 None:intergenic 25.0%
! TAATCTTTGAATTTAACGGA+TGG + chr1_3:47315618-47315637 None:intergenic 25.0%
! ATCCGTTAAATTCAAAGATT+AGG - chr1_3:47315617-47315636 Msa0121480:CDS 25.0%
! TCCGTTAAATTCAAAGATTA+GGG - chr1_3:47315618-47315637 Msa0121480:CDS 25.0%
! ACCCTAATCTTTGAATTTAA+CGG + chr1_3:47315622-47315641 None:intergenic 25.0%
!!! ATTAATTTGCATGTATAGTG+TGG - chr1_3:47315689-47315708 Msa0121480:intron 25.0%
!!! TTAATTTGCATGTATAGTGT+GGG - chr1_3:47315690-47315709 Msa0121480:intron 25.0%
!!! TCAGATAAAATCGTTTTAAC+TGG + chr1_3:47315976-47315995 None:intergenic 25.0%
!! TTATCTGAAAGTCTGAATTT+TGG - chr1_3:47315988-47316007 Msa0121480:intron 25.0%
!! TATCTGAAAGTCTGAATTTT+GGG - chr1_3:47315989-47316008 Msa0121480:intron 25.0%
!! AGATTTATTTGCGTTTTTCA+TGG - chr1_3:47316039-47316058 Msa0121480:intron 25.0%
!! TATTATGTACTCGTTCTTTT+TGG - chr1_3:47316592-47316611 Msa0121480:intron 25.0%
!!! GAATCAGCTTTTAACTTTTA+AGG - chr1_3:47316685-47316704 Msa0121480:intron 25.0%
!!! TTCTTTTAGATTAGCTAAGT+AGG - chr1_3:47316796-47316815 Msa0121480:intron 25.0%
!!! CTGATATTTTTTAGCAGTTT+GGG + chr1_3:47316851-47316870 None:intergenic 25.0%
! AAACTGCTAAAAAATATCAG+CGG - chr1_3:47316851-47316870 Msa0121480:intron 25.0%
!!! TTTGAGCTTGTTGTTTAATT+AGG - chr1_3:47317360-47317379 Msa0121480:CDS 25.0%
! GAACAGATAAATAGTTCTTA+TGG + chr1_3:47317439-47317458 None:intergenic 25.0%
! GTCTAAAGGTTATGATAAAT+TGG + chr1_3:47317602-47317621 None:intergenic 25.0%
! AGTATAACATAAAATCTGGT+GGG - chr1_3:47317980-47317999 Msa0121480:intron 25.0%
! TATCTAGTGATAGAAAAATG+TGG - chr1_3:47318009-47318028 Msa0121480:intron 25.0%
! ATCTAGTGATAGAAAAATGT+GGG - chr1_3:47318010-47318029 Msa0121480:intron 25.0%
! AGTTCAATTTCCAATTGTTT+AGG - chr1_3:47318413-47318432 Msa0121480:intron 25.0%
! TTAACAAGATCCTAAACAAT+TGG + chr1_3:47318426-47318445 None:intergenic 25.0%
! TAATTCAAATTCCTGTAATG+GGG + chr1_3:47318466-47318485 None:intergenic 25.0%
! CATAATTCAAATTCCTGTAA+TGG + chr1_3:47318468-47318487 None:intergenic 25.0%
! TCTTAATATTAACAAGTAGC+TGG - chr1_3:47318563-47318582 Msa0121480:intron 25.0%
! ATAACATGTTTGAAAAATCC+TGG - chr1_3:47318600-47318619 Msa0121480:intron 25.0%
! ACTTATTAGCAGCTATTAAA+AGG - chr1_3:47318644-47318663 Msa0121480:intron 25.0%
! ACTTTCTGTAGATATATTCT+AGG - chr1_3:47318982-47319001 Msa0121480:CDS 25.0%
AGAGAATCTGAATCTGAATA+GGG + chr1_3:47315338-47315357 None:intergenic 30.0%
AAGAGAATCTGAATCTGAAT+AGG + chr1_3:47315339-47315358 None:intergenic 30.0%
! GAAATGATGGAATTGTTGAA+TGG + chr1_3:47315367-47315386 None:intergenic 30.0%
GTTGTTGAATGAGAAAGATT+TGG + chr1_3:47315398-47315417 None:intergenic 30.0%
! AAAAAGTGCATCAAATGAGA+AGG + chr1_3:47315844-47315863 None:intergenic 30.0%
! ATCTGAAAGTCTGAATTTTG+GGG - chr1_3:47315990-47316009 Msa0121480:intron 30.0%
ACTTCTCACAGAAATTCAAT+GGG - chr1_3:47316115-47316134 Msa0121480:intron 30.0%
AATTGAATACAAAAGGAGCT+TGG + chr1_3:47316434-47316453 None:intergenic 30.0%
! AGCTGTTATTGGTGATTATA+AGG - chr1_3:47316569-47316588 Msa0121480:intron 30.0%
TTGTTCTACATGAAAGACTA+AGG + chr1_3:47316649-47316668 None:intergenic 30.0%
AGTCTTTCATGTAGAACAAT+TGG - chr1_3:47316650-47316669 Msa0121480:intron 30.0%
AAGAATCTCTGACATTGAAA+TGG + chr1_3:47316781-47316800 None:intergenic 30.0%
!!! GCTGATATTTTTTAGCAGTT+TGG + chr1_3:47316852-47316871 None:intergenic 30.0%
AATTTGAATTTCCTCTTTCC+AGG - chr1_3:47317007-47317026 Msa0121480:intron 30.0%
ATTTGAATTTCCTCTTTCCA+GGG - chr1_3:47317008-47317027 Msa0121480:intron 30.0%
AAGTGGGATTGTTTATTTAG+TGG + chr1_3:47317237-47317256 None:intergenic 30.0%
!!! AAACCTGTATTTTGGGTTAA+CGG - chr1_3:47317304-47317323 Msa0121480:intron 30.0%
AGAACATCAATTAGCATATG+TGG + chr1_3:47317386-47317405 None:intergenic 30.0%
ATTAAACAAACTCTGATCCT+TGG - chr1_3:47317526-47317545 Msa0121480:CDS 30.0%
TTAAACAAACTCTGATCCTT+GGG - chr1_3:47317527-47317546 Msa0121480:CDS 30.0%
ATGAAATTGTGAAAGGAAGT+AGG + chr1_3:47317555-47317574 None:intergenic 30.0%
TTAGTATTATGAGGGTCTAA+AGG + chr1_3:47317616-47317635 None:intergenic 30.0%
GTTGGGTTTATATCATCAAT+TGG - chr1_3:47317881-47317900 Msa0121480:intron 30.0%
TATATCATCAATTGGAGATG+TGG - chr1_3:47317889-47317908 Msa0121480:intron 30.0%
GAGTATAACATAAAATCTGG+TGG - chr1_3:47317979-47317998 Msa0121480:intron 30.0%
TCTAGTGATAGAAAAATGTG+GGG - chr1_3:47318011-47318030 Msa0121480:intron 30.0%
! GGCTTAGGACATATTATTTT+AGG + chr1_3:47318109-47318128 None:intergenic 30.0%
! TTTTCAACATAGTAAGGCTT+AGG + chr1_3:47318124-47318143 None:intergenic 30.0%
!!! TCTGCTTTTAGAACATTCAA+AGG - chr1_3:47318189-47318208 Msa0121480:intron 30.0%
TGATGCTACACAAAAAAACT+AGG - chr1_3:47318227-47318246 Msa0121480:intron 30.0%
GATGCTACACAAAAAAACTA+GGG - chr1_3:47318228-47318247 Msa0121480:intron 30.0%
! AAGATCTTAAGGTAGTGTTT+TGG + chr1_3:47318257-47318276 None:intergenic 30.0%
AAACACTACCTTAAGATCTT+TGG - chr1_3:47318257-47318276 Msa0121480:CDS 30.0%
AGATGTAAGTTTAACATGCT+AGG + chr1_3:47318374-47318393 None:intergenic 30.0%
GATAATTAGCTAGGGAAAAT+AGG + chr1_3:47318539-47318558 None:intergenic 30.0%
! ACTAATTTTATATGGCACAC+AGG - chr1_3:47318800-47318819 Msa0121480:intron 30.0%
AATATATGATATATCTGCCC+TGG - chr1_3:47319207-47319226 Msa0121480:five_prime_UTR 30.0%
CAAATGGAAATTTAACACCA+GGG + chr1_3:47319227-47319246 None:intergenic 30.0%
! ATGATGGAATTGTTGAATGG+TGG + chr1_3:47315364-47315383 None:intergenic 35.0%
AATGAGAAAGATTTGGGAGA+AGG + chr1_3:47315391-47315410 None:intergenic 35.0%
TTGTTGCAAAAAACTGCTTG+AGG - chr1_3:47315876-47315895 Msa0121480:intron 35.0%
!! GAATTTTGGGGAAATTGTGT+TGG - chr1_3:47316002-47316021 Msa0121480:intron 35.0%
GACTTCTCACAGAAATTCAA+TGG - chr1_3:47316114-47316133 Msa0121480:intron 35.0%
! AGAAATTCAATGGGTTTCTC+AGG - chr1_3:47316124-47316143 Msa0121480:intron 35.0%
ACTGTTGCAATGTAGCAAAA+AGG + chr1_3:47316297-47316316 None:intergenic 35.0%
! TGCAACAGTTATCTTTTGTC+AGG - chr1_3:47316308-47316327 Msa0121480:intron 35.0%
ACAATAAAAATCTCAGCAGC+TGG + chr1_3:47316379-47316398 None:intergenic 35.0%
CAGCAAACGATAACTCATAA+AGG + chr1_3:47316980-47316999 None:intergenic 35.0%
TGGGATTGTTTATTTAGTGG+TGG + chr1_3:47317234-47317253 None:intergenic 35.0%
GTGTAGCATCAAATCAAAGT+GGG + chr1_3:47317253-47317272 None:intergenic 35.0%
!!! AACCTGTATTTTGGGTTAAC+GGG - chr1_3:47317305-47317324 Msa0121480:intron 35.0%
AGGTTATGATAAATTGGACG+AGG + chr1_3:47317596-47317615 None:intergenic 35.0%
! GGTCTAGCTTAGTATTATGA+GGG + chr1_3:47317624-47317643 None:intergenic 35.0%
! TGGTCTAGCTTAGTATTATG+AGG + chr1_3:47317625-47317644 None:intergenic 35.0%
! GATTTCGTAGAAAAGTGCAT+GGG + chr1_3:47317674-47317693 None:intergenic 35.0%
! TGATTTCGTAGAAAAGTGCA+TGG + chr1_3:47317675-47317694 None:intergenic 35.0%
!!! TTTCTGGGATTGTGCATTTT+TGG - chr1_3:47317811-47317830 Msa0121480:intron 35.0%
!!! ATTGTGCATTTTTGGTTCAG+TGG - chr1_3:47317819-47317838 Msa0121480:intron 35.0%
TATGTAACTGGAGAGACTAA+AGG - chr1_3:47317913-47317932 Msa0121480:intron 35.0%
! TACCTTAAGATCTTTGGAGA+GGG - chr1_3:47318263-47318282 Msa0121480:CDS 35.0%
! ATTTTCTCTACACATCCACA+AGG - chr1_3:47318297-47318316 Msa0121480:CDS 35.0%
TTTGCTGGAACAGCAAATAA+AGG + chr1_3:47318351-47318370 None:intergenic 35.0%
TGGAAATTGAACTGAAGAAC+TGG + chr1_3:47318406-47318425 None:intergenic 35.0%
TTCAATAGCAGGTGAATGAA+TGG + chr1_3:47318494-47318513 None:intergenic 35.0%
TACGAAGATTGTTCAATAGC+AGG + chr1_3:47318505-47318524 None:intergenic 35.0%
GTTTGAAAAATCCTGGAAGT+TGG - chr1_3:47318607-47318626 Msa0121480:intron 35.0%
! AAAAATCCTGGAAGTTGGTT+GGG - chr1_3:47318612-47318631 Msa0121480:intron 35.0%
CAGCTATTAAAAGGTAATGC+TGG - chr1_3:47318653-47318672 Msa0121480:intron 35.0%
TGTTGCAGTACCATTACTAT+GGG - chr1_3:47318878-47318897 Msa0121480:intron 35.0%
GAATTGTAGAGAAGGTCTAT+TGG - chr1_3:47318952-47318971 Msa0121480:CDS 35.0%
TATACAGAGTGCACAAAGAA+TGG + chr1_3:47319016-47319035 None:intergenic 35.0%
ATCCAATTGTCCATTCTATC+TGG - chr1_3:47319125-47319144 Msa0121480:exon 35.0%
TTTATTGTGGCCAGATAGAA+TGG + chr1_3:47319138-47319157 None:intergenic 35.0%
ATCTGGCCACAATAAATTGT+TGG - chr1_3:47319142-47319161 Msa0121480:exon 35.0%
CCAGAACCAACAATTTATTG+TGG + chr1_3:47319151-47319170 None:intergenic 35.0%
!! CCACAATAAATTGTTGGTTC+TGG - chr1_3:47319148-47319167 Msa0121480:five_prime_UTR 35.0%
CCAAATGGAAATTTAACACC+AGG + chr1_3:47319228-47319247 None:intergenic 35.0%
CTCTCTTTCGCTTTCTTCAA+TGG - chr1_3:47315300-47315319 Msa0121480:three_prime_UTR 40.0%
TTTGGGAGAAGGAGAAATGA+TGG + chr1_3:47315380-47315399 None:intergenic 40.0%
!! TTGATGCAGAAGCTGTTTTG+TGG - chr1_3:47315748-47315767 Msa0121480:intron 40.0%
TTTACCTTCTTCACCACTGA+CGG - chr1_3:47316152-47316171 Msa0121480:intron 40.0%
! ACAATATCAAAGCATCCGAG+TGG + chr1_3:47316520-47316539 None:intergenic 40.0%
TCTCATGTTTCACAGAAGCA+AGG - chr1_3:47316820-47316839 Msa0121480:intron 40.0%
CTCATGTTTCACAGAAGCAA+GGG - chr1_3:47316821-47316840 Msa0121480:intron 40.0%
GTATCAAGAGAGCAACTACA+TGG - chr1_3:47316873-47316892 Msa0121480:intron 40.0%
AACTACATGGATCCCAATCA+AGG - chr1_3:47316886-47316905 Msa0121480:intron 40.0%
TCTTTCCAGGGACTTGATAT+GGG - chr1_3:47317020-47317039 Msa0121480:intron 40.0%
GATTGAGATGCTTAGTGATG+TGG - chr1_3:47317076-47317095 Msa0121480:intron 40.0%
TGGTGGTAAAATGTTGTGCA+TGG + chr1_3:47317217-47317236 None:intergenic 40.0%
CGTGTAGCATCAAATCAAAG+TGG + chr1_3:47317254-47317273 None:intergenic 40.0%
!! GCAAGAGTTCGATTTGTTAG+TGG - chr1_3:47317337-47317356 Msa0121480:intron 40.0%
CATTGTGTGAGTCAGAAAGT+TGG + chr1_3:47317645-47317664 None:intergenic 40.0%
ACTTTCTGACTCACACAATG+AGG - chr1_3:47317645-47317664 Msa0121480:intron 40.0%
ATCACGTATCATTCCTCATC+TGG - chr1_3:47317721-47317740 Msa0121480:intron 40.0%
AGAGGAATTGAAACCAGATG+AGG + chr1_3:47317737-47317756 None:intergenic 40.0%
TTCCTCTTCTGCTGAATCAT+CGG - chr1_3:47317750-47317769 Msa0121480:intron 40.0%
AGTGAGCTATCTGTGAAGTT+GGG - chr1_3:47317864-47317883 Msa0121480:intron 40.0%
TGGAGATGTGGTTATGTAAC+TGG - chr1_3:47317901-47317920 Msa0121480:intron 40.0%
AGAGTGGTTGAGAAGAAGAT+GGG - chr1_3:47317939-47317958 Msa0121480:intron 40.0%
GAAGAAGATGGGGAATGATT+TGG - chr1_3:47317950-47317969 Msa0121480:intron 40.0%
TGATAGAAAAATGTGGGGCA+TGG - chr1_3:47318016-47318035 Msa0121480:intron 40.0%
! CTACCTTAAGATCTTTGGAG+AGG - chr1_3:47318262-47318281 Msa0121480:CDS 40.0%
TACCCTCTCCAAAGATCTTA+AGG + chr1_3:47318268-47318287 None:intergenic 40.0%
GTTTAACATGCTAGGTTTGC+TGG + chr1_3:47318366-47318385 None:intergenic 40.0%
GCAATAAGTTACCCCATTAC+AGG - chr1_3:47318452-47318471 Msa0121480:intron 40.0%
! ACAAGTAGCTGGAGCTTTTA+TGG - chr1_3:47318574-47318593 Msa0121480:intron 40.0%
! CAAGTAGCTGGAGCTTTTAT+GGG - chr1_3:47318575-47318594 Msa0121480:intron 40.0%
! GAAAAATCCTGGAAGTTGGT+TGG - chr1_3:47318611-47318630 Msa0121480:intron 40.0%
ATGCTGGTAAAACACATGCT+AGG - chr1_3:47318669-47318688 Msa0121480:intron 40.0%
TGCTGGTAAAACACATGCTA+GGG - chr1_3:47318670-47318689 Msa0121480:intron 40.0%
CTAATGGTCACAGAGAATTG+AGG + chr1_3:47318779-47318798 None:intergenic 40.0%
TAATGGTACTGCAACAGTCA+TGG + chr1_3:47318874-47318893 None:intergenic 40.0%
CTGTTGCAGTACCATTACTA+TGG - chr1_3:47318877-47318896 Msa0121480:intron 40.0%
GTTGCAGTACCATTACTATG+GGG - chr1_3:47318879-47318898 Msa0121480:intron 40.0%
! AGGAGGAATGAGTTGCTTTG+GGG + chr1_3:47315477-47315496 None:intergenic 45.0%
! GAGGAGGAATGAGTTGCTTT+GGG + chr1_3:47315478-47315497 None:intergenic 45.0%
! GAAGGAATCGTTGTTGTTGG+AGG + chr1_3:47315497-47315516 None:intergenic 45.0%
CTCGAAGGAATCGTTGTTGT+TGG + chr1_3:47315500-47315519 None:intergenic 45.0%
! ATTCCTTCGAGTTCTTCCCT+TGG - chr1_3:47315509-47315528 Msa0121480:CDS 45.0%
!! ACTGACGGACTGATCCAAAT+CGG - chr1_3:47316167-47316186 Msa0121480:intron 45.0%
CCTAGACAAAGGCCTTGATT+GGG + chr1_3:47316901-47316920 None:intergenic 45.0%
ACCTAGACAAAGGCCTTGAT+TGG + chr1_3:47316902-47316921 None:intergenic 45.0%
! CAAAGAGTGCACCTAGACAA+AGG + chr1_3:47316912-47316931 None:intergenic 45.0%
CATATCAAGTCCCTGGAAAG+AGG + chr1_3:47317021-47317040 None:intergenic 45.0%
CTCTTTCCAGGGACTTGATA+TGG - chr1_3:47317019-47317038 Msa0121480:intron 45.0%
CACTAAGCATCTCAATCGAG+CGG + chr1_3:47317073-47317092 None:intergenic 45.0%
TGTGGTGCAAGATACTGTCT+TGG - chr1_3:47317094-47317113 Msa0121480:intron 45.0%
CAAGATACTGTCTTGGAGCA+TGG - chr1_3:47317101-47317120 Msa0121480:intron 45.0%
ATACTGTCTTGGAGCATGGT+GGG - chr1_3:47317105-47317124 Msa0121480:intron 45.0%
CTCCCGTTAACCCAAAATAC+AGG + chr1_3:47317310-47317329 None:intergenic 45.0%
TTCTCGAGTCTTCTGCAAAC+TGG + chr1_3:47317505-47317524 None:intergenic 45.0%
TGAAAGGAAGTAGGAACCCA+AGG + chr1_3:47317546-47317565 None:intergenic 45.0%
TCCTCTTCTGCTGAATCATC+GGG - chr1_3:47317751-47317770 Msa0121480:intron 45.0%
GAGTGAGCTATCTGTGAAGT+TGG - chr1_3:47317863-47317882 Msa0121480:intron 45.0%
GAGAGACTAAAGGATGAGAG+TGG - chr1_3:47317923-47317942 Msa0121480:intron 45.0%
GAGAGTGGTTGAGAAGAAGA+TGG - chr1_3:47317938-47317957 Msa0121480:intron 45.0%
GAGTGGTTGAGAAGAAGATG+GGG - chr1_3:47317940-47317959 Msa0121480:intron 45.0%
! GAAGATGGGGAATGATTTGG+TGG - chr1_3:47317953-47317972 Msa0121480:intron 45.0%
ATCAGTTCGCAAAGAAGCTG+TGG + chr1_3:47318326-47318345 None:intergenic 45.0%
GCTGGTAAAACACATGCTAG+GGG - chr1_3:47318671-47318690 Msa0121480:intron 45.0%
CTTCGCCTAGCTGTTAAAAG+TGG - chr1_3:47318924-47318943 Msa0121480:CDS 45.0%
!! CTCCTCCACTTTTAACAGCT+AGG + chr1_3:47318932-47318951 None:intergenic 45.0%
CTAGCTGTTAAAAGTGGAGG+AGG - chr1_3:47318930-47318949 Msa0121480:CDS 45.0%
TGGAGGAGGAATTGTAGAGA+AGG - chr1_3:47318944-47318963 Msa0121480:CDS 45.0%
GGCCAGATAGAATGGACAAT+TGG + chr1_3:47319130-47319149 None:intergenic 45.0%
GAGAGGTAGAAGGAGCAACA+GGG + chr1_3:47315432-47315451 None:intergenic 50.0%
TGAGAGGTAGAAGGAGCAAC+AGG + chr1_3:47315433-47315452 None:intergenic 50.0%
AGACGAGGATGAGAGGTAGA+AGG + chr1_3:47315442-47315461 None:intergenic 50.0%
ACGAAGAAGACGAGGATGAG+AGG + chr1_3:47315449-47315468 None:intergenic 50.0%
! GGAGGAATGAGTTGCTTTGG+GGG + chr1_3:47315476-47315495 None:intergenic 50.0%
GGAGGAGGAATGAGTTGCTT+TGG + chr1_3:47315479-47315498 None:intergenic 50.0%
! GGAATCGTTGTTGTTGGAGG+AGG + chr1_3:47315494-47315513 None:intergenic 50.0%
CGTTATCATCGTCGGACCAA+GGG + chr1_3:47315528-47315547 None:intergenic 50.0%
CCTTGGTCCGACGATGATAA+CGG - chr1_3:47315526-47315545 Msa0121480:CDS 50.0%
GAGCGAACCGTTATCATCGT+CGG + chr1_3:47315536-47315555 None:intergenic 50.0%
GATTTGGATCAGTCCGTCAG+TGG + chr1_3:47316168-47316187 None:intergenic 50.0%
GATCCAAATCGGAGGCAACA+TGG - chr1_3:47316178-47316197 Msa0121480:intron 50.0%
GAACCATGTTGCCTCCGATT+TGG + chr1_3:47316184-47316203 None:intergenic 50.0%
! TGGAAGAGTGCGAAACCACT+CGG - chr1_3:47316502-47316521 Msa0121480:intron 50.0%
CCCAATCAAGGCCTTTGTCT+AGG - chr1_3:47316898-47316917 Msa0121480:intron 50.0%
! GGCAGACGACTCTGCATTTT+TGG - chr1_3:47317041-47317060 Msa0121480:intron 50.0%
GATACTGTCTTGGAGCATGG+TGG - chr1_3:47317104-47317123 Msa0121480:intron 50.0%
TACTGTCTTGGAGCATGGTG+GGG - chr1_3:47317106-47317125 Msa0121480:intron 50.0%
CTAGTGTGCAGAAGTGACGT+AGG - chr1_3:47317184-47317203 Msa0121480:intron 50.0%
! TTTGGGTTAACGGGAGCAAG+AGG - chr1_3:47317314-47317333 Msa0121480:intron 50.0%
TTGGGTTAACGGGAGCAAGA+GGG - chr1_3:47317315-47317334 Msa0121480:intron 50.0%
ACCCGATGATTCAGCAGAAG+AGG + chr1_3:47317755-47317774 None:intergenic 50.0%
CTAGTGTGCACAAGTGACAC+AGG + chr1_3:47318049-47318068 None:intergenic 50.0%
AAGAAGCTGTGGCTTCCTTG+TGG + chr1_3:47318315-47318334 None:intergenic 50.0%
! ATCCTGGAAGTTGGTTGGGT+TGG - chr1_3:47318616-47318635 Msa0121480:intron 50.0%
AACCAACCCAACCAACTTCC+AGG + chr1_3:47318621-47318640 None:intergenic 50.0%
!! TGGAAGTTGGTTGGGTTGGT+TGG - chr1_3:47318620-47318639 Msa0121480:intron 50.0%
CGCCTAGCTGTTAAAAGTGG+AGG - chr1_3:47318927-47318946 Msa0121480:CDS 50.0%
GGGGAGAAACGAAGAAGACG+AGG + chr1_3:47315457-47315476 None:intergenic 55.0%
GGACCAAGGGAAGAACTCGA+AGG + chr1_3:47315515-47315534 None:intergenic 55.0%
CCGTTATCATCGTCGGACCA+AGG + chr1_3:47315529-47315548 None:intergenic 55.0%
CAGTCCGTCAGTGGTGAAGA+AGG + chr1_3:47316159-47316178 None:intergenic 55.0%
!! GACGGACTGATCCAAATCGG+AGG - chr1_3:47316170-47316189 Msa0121480:intron 55.0%
TCAGAAGACTTGACGCGACG+AGG + chr1_3:47316206-47316225 None:intergenic 55.0%
GTCTGCCCATATCAAGTCCC+TGG + chr1_3:47317028-47317047 None:intergenic 55.0%
GTTCAGTGGAGCCTACCCTT+CGG - chr1_3:47317833-47317852 Msa0121480:intron 55.0%
ACTCAACGACTCCGAAGGGT+AGG + chr1_3:47317847-47317866 None:intergenic 55.0%
GCTCACTCAACGACTCCGAA+GGG + chr1_3:47317851-47317870 None:intergenic 55.0%
AGCTCACTCAACGACTCCGA+AGG + chr1_3:47317852-47317871 None:intergenic 55.0%
ACAGGTGATTGCCGCAGAGA+AGG - chr1_3:47318818-47318837 Msa0121480:intron 55.0%
ACCTCTGCTTGCCTTCTCTG+CGG + chr1_3:47318832-47318851 None:intergenic 55.0%
GGAGGAACGCCCCATAGTAA+TGG + chr1_3:47318891-47318910 None:intergenic 55.0%
! CGAAGTGTCTCAGAAGCTGG+AGG + chr1_3:47318909-47318928 None:intergenic 55.0%
! AGGCGAAGTGTCTCAGAAGC+TGG + chr1_3:47318912-47318931 None:intergenic 55.0%
! TGTCTTGGAGCATGGTGGGG+AGG - chr1_3:47317109-47317128 Msa0121480:intron 60.0%
! TTGGAGCATGGTGGGGAGGT+AGG - chr1_3:47317113-47317132 Msa0121480:intron 60.0%
GCCGCAGAGAAGGCAAGCAG+AGG - chr1_3:47318828-47318847 Msa0121480:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 47315215 47319247 47315215 ID=Msa0121480;Name=Msa0121480
chr1_3 mRNA 47315215 47319247 47315215 ID=Msa0121480-mRNA-1;Parent=Msa0121480;Name=Msa0121480-mRNA-1;_AED=0.12;_eAED=0.12;_QI=104|0.75|0.8|1|0.75|0.8|5|255|231
chr1_3 exon 47315215 47315640 47315215 ID=Msa0121480-mRNA-1:exon:14306;Parent=Msa0121480-mRNA-1
chr1_3 exon 47317353 47317433 47317353 ID=Msa0121480-mRNA-1:exon:14305;Parent=Msa0121480-mRNA-1
chr1_3 exon 47317514 47317627 47317514 ID=Msa0121480-mRNA-1:exon:14304;Parent=Msa0121480-mRNA-1
chr1_3 exon 47318236 47318336 47318236 ID=Msa0121480-mRNA-1:exon:14303;Parent=Msa0121480-mRNA-1
chr1_3 exon 47318915 47319247 47318915 ID=Msa0121480-mRNA-1:exon:14302;Parent=Msa0121480-mRNA-1
chr1_3 five_prime_UTR 47319144 47319247 47319144 ID=Msa0121480-mRNA-1:five_prime_utr;Parent=Msa0121480-mRNA-1
chr1_3 CDS 47318915 47319143 47318915 ID=Msa0121480-mRNA-1:cds;Parent=Msa0121480-mRNA-1
chr1_3 CDS 47318236 47318336 47318236 ID=Msa0121480-mRNA-1:cds;Parent=Msa0121480-mRNA-1
chr1_3 CDS 47317514 47317627 47317514 ID=Msa0121480-mRNA-1:cds;Parent=Msa0121480-mRNA-1
chr1_3 CDS 47317353 47317433 47317353 ID=Msa0121480-mRNA-1:cds;Parent=Msa0121480-mRNA-1
chr1_3 CDS 47315470 47315640 47315470 ID=Msa0121480-mRNA-1:cds;Parent=Msa0121480-mRNA-1
chr1_3 three_prime_UTR 47315215 47315469 47315215 ID=Msa0121480-mRNA-1:three_prime_utr;Parent=Msa0121480-mRNA-1
Gene Sequence

>Msa0121480

ATGGCTGAAACTTCAACCCTATTCAGATTCAGATTCTCTTCTCCACCATTCAACAATTCCATCATTTCTCCTTCTCCCAAATCTTTCTCATTCAACAACAGCAGCTCTTTCCCTGTTGCTCCTTCTACCTCTCATCCTCGTCTTCTTCGTTTCTCCCCCAAAGCAACTCATTCCTCCTCCAACAACAACGATTCCTTCGAGTTCTTCCCTTGGTCCGACGATGATAACGAAATTCAATGGGTTTCTCAGGACAAATTTACCTTCTTCACCACTGACGGACTGATCCAAATCGGAGGCAACATGGTTCCTCGTCGCGTCAAGTCTTCTGATAAGCAAGGGAAATCCCAAACTGCTAAAAAATATCAGCGGTATCAAGAGAGCAACTACATGGATCCCAATCAAGGCCTTTGTCTAGGTGCACTCTTTGATATTGCAGCTACAAATGGACTTGATATGGGCAGACGACTCTGCATTTTTGGTTTCTGCCGCTCGATTGAGATGCTTAGTGATGTGGTGCAAGATACTGTGATTGCCGCAGAGAAGGCAAGCAGAGGTGATTTGCATGAAAAGCTAACCATGACTGTTGCAGTACCATTACTATGGGGCGTTCCTCCAGCTTCTGAGACACTTCGCCTAGCTGTTAAAAGTGGAGGAGGAATTGTAGAGAAGGTCTATTGGCAATTCGACTTTCTGTAG

Protein sequence

>Msa0121480

MAETSTLFRFRFSSPPFNNSIISPSPKSFSFNNSSSFPVAPSTSHPRLLRFSPKATHSSSNNNDSFEFFPWSDDDNEIQWVSQDKFTFFTTDGLIQIGGNMVPRRVKSSDKQGKSQTAKKYQRYQESNYMDPNQGLCLGALFDIAATNGLDMGRRLCIFGFCRSIEMLSDVVQDTVIAAEKASRGDLHEKLTMTVAVPLLWGVPPASETLRLAVKSGGGIVEKVYWQFDFL*