AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0043680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0043680 MtrunA17_Chr1g0209801 95.331 257 12 0 1 257 1 257 5.96e-179 492
Msa0043680 MtrunA17_Chr1g0193661 32.639 144 88 5 78 218 74 211 8.38e-12 63.9
Msa0043680 MtrunA17_Chr4g0066351 32.639 144 88 5 78 218 74 211 9.77e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0043680 AT3G25920.1 70.464 237 58 2 17 243 24 258 2.52e-111 322

Find 81 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAATTGGTTTCTTCTTT+AGG 0.207614 1_1:-75037766 Msa0043680:three_prime_UTR
TCGGTTTCGGTTGGACAATT+TGG 0.209684 1_1:-75042630 Msa0043680:CDS
CAAGGAGCGAGTTGTGGTTT+TGG 0.247810 1_1:-75042548 Msa0043680:CDS
ATCAATCATCATCAACAAAT+TGG 0.250968 1_1:-75037779 Msa0043680:three_prime_UTR
TCCTGCAATTCCTCTAAGTT+TGG 0.258498 1_1:+75042442 None:intergenic
CGCTCTTCACTCTGTCAAAA+TGG 0.262848 1_1:+75042939 None:intergenic
CTTCTCTTATTCCTGTTTCC+TGG 0.269459 1_1:-75042879 Msa0043680:CDS
CGGTTTCGGTTGGACAATTT+GGG 0.284648 1_1:-75042629 Msa0043680:CDS
AGCAGCTGCTTCTCGCTTCT+TGG 0.291577 1_1:+75037849 None:intergenic
TTGCATATTTAAACAGAATC+TGG 0.313222 1_1:+75037820 None:intergenic
CGACGATTGCCCAAACTTAG+AGG 0.316218 1_1:-75042452 Msa0043680:CDS
AGATTGATGTGGACATATTT+CGG 0.336463 1_1:+75041448 None:intergenic
CTCTCTCGCTTCTCCATTCA+AGG 0.354654 1_1:-75042851 Msa0043680:intron
CTCTTTCTTGAACCTGGTTG+TGG 0.358662 1_1:+75042605 None:intergenic
CATCATTGAACAGTGAAATA+AGG 0.365832 1_1:+75037425 None:intergenic
TTAAGACATGGACATAGATA+TGG 0.367880 1_1:+75042731 None:intergenic
GAGAAAACTTCAATACAAAA+AGG 0.369347 1_1:+75037703 None:intergenic
TGTTCCATCACTGTGATTCC+TGG 0.369456 1_1:-75037934 Msa0043680:CDS
CCCAAACTTAGAGGAATTGC+AGG 0.376415 1_1:-75042443 Msa0043680:CDS
TGATTCCTGGCCGTAAGAAA+TGG 0.380224 1_1:-75037921 Msa0043680:CDS
CCTGCAATTCCTCTAAGTTT+GGG 0.397805 1_1:+75042443 None:intergenic
CTCCTTCGCTGATGTGGAAA+AGG 0.406202 1_1:+75037975 None:intergenic
AGGTGGATACCGAAAGTTCT+TGG 0.407096 1_1:-75037455 Msa0043680:three_prime_UTR
GGAAATAGAAATACCTTGAA+TGG 0.411477 1_1:+75042838 None:intergenic
CTCTGTCAAAATGGAACAAA+CGG 0.412322 1_1:+75042948 None:intergenic
TTTGCTCTCTTTCTTGAACC+TGG 0.419614 1_1:+75042599 None:intergenic
TAATAAGGCTGCTTCTGCTT+CGG 0.436199 1_1:-75042675 Msa0043680:CDS
GGCACCGAACCAAGAACTTT+CGG 0.440027 1_1:+75037446 None:intergenic
AAGAAAGAGAGCAAAGAGAA+AGG 0.443452 1_1:-75042591 Msa0043680:CDS
AGAGAGGGTAACCAGGAAAC+AGG 0.445145 1_1:+75042868 None:intergenic
ATGGCTTAACCCATTTCTTA+CGG 0.452810 1_1:+75037911 None:intergenic
AACCAGCAGGTGAAAATGTT+CGG 0.456863 1_1:-75042649 Msa0043680:CDS
CGATTTGTGCTGGAAACCTT+TGG 0.460118 1_1:-75037571 Msa0043680:three_prime_UTR
AGAAGGGGAAGAGGTGTCTC+TGG 0.461261 1_1:-75041398 Msa0043680:CDS
CAGGTGAAAATGTTCGGTTT+CGG 0.473561 1_1:-75042643 Msa0043680:CDS
GTTTGCTTGTCGATTTGTGC+TGG 0.476311 1_1:-75037581 Msa0043680:three_prime_UTR
GACAATTTGGGTCCACAACC+AGG 0.479320 1_1:-75042617 Msa0043680:CDS
AGAAAGAGAGCAAAGAGAAA+GGG 0.484644 1_1:-75042590 Msa0043680:CDS
TGAAAATGTTCGGTTTCGGT+TGG 0.487169 1_1:-75042639 Msa0043680:CDS
AGAAGCGAGAGAGGGTAACC+AGG 0.489358 1_1:+75042861 None:intergenic
AAGTTTCTCCTTCGCTGATG+TGG 0.489671 1_1:+75037969 None:intergenic
TTAACCCATTTCTTACGGCC+AGG 0.492636 1_1:+75037916 None:intergenic
GAAATATGTCCACATCAATC+TGG 0.495258 1_1:-75041446 Msa0043680:CDS
GGAACGGAAACTTCTATTGA+AGG 0.496485 1_1:-75041335 Msa0043680:intron
AGTTTCCGTTCCCTTCCTGA+TGG 0.497026 1_1:+75041346 None:intergenic
ACATAATAAGGTATGCATGC+TGG 0.501018 1_1:-75041475 Msa0043680:intron
TCTGCTTCGGTGAAACCAGC+AGG 0.507750 1_1:-75042662 Msa0043680:CDS
AGAGCAAAGAGAAAGGGAAG+AGG 0.509714 1_1:-75042584 Msa0043680:CDS
GATTCCTGGCCGTAAGAAAT+GGG 0.511756 1_1:-75037920 Msa0043680:CDS
GATACCGAAAGTTCTTGGTT+CGG 0.514764 1_1:-75037450 Msa0043680:three_prime_UTR
GTTATGTAGTTTCTTGTACA+AGG 0.522578 1_1:-75037475 Msa0043680:three_prime_UTR
GAAGATGCTGGATTTCAAGA+AGG 0.525528 1_1:-75041415 Msa0043680:CDS
AAGGAGAAACTTGAGTCTGC+TGG 0.526406 1_1:-75037958 Msa0043680:CDS
CTGGTAGACATAGAAGATGC+TGG 0.527862 1_1:-75041427 Msa0043680:CDS
AAACGTGTGATTAACCCATC+AGG 0.531753 1_1:-75041361 Msa0043680:CDS
AAGATGCTGGATTTCAAGAA+GGG 0.537870 1_1:-75041414 Msa0043680:CDS
GTTTCCGTTCCCTTCCTGAT+GGG 0.539207 1_1:+75041347 None:intergenic
AGAGGTATTGCCGCAGGACA+AGG 0.557884 1_1:-75042566 Msa0043680:CDS
TTGGGCAATCGTCGATAAAG+TGG 0.564517 1_1:+75042461 None:intergenic
AAGAAGTTGACAATAAAAGC+TGG 0.573815 1_1:-75038000 Msa0043680:CDS
GCAGGACAAGGAGCGAGTTG+TGG 0.577933 1_1:-75042554 Msa0043680:CDS
TGGATTTCAAGAAGGGGAAG+AGG 0.578835 1_1:-75041407 Msa0043680:CDS
GTAGGGAAATGTGAAAACCT+TGG 0.584114 1_1:-75042762 Msa0043680:intron
AAGGGAAGAGGTATTGCCGC+AGG 0.588347 1_1:-75042572 Msa0043680:CDS
TTGTGCTGGAAACCTTTGGT+AGG 0.590784 1_1:-75037567 Msa0043680:three_prime_UTR
CTTGAATGGAGAAGCGAGAG+AGG 0.590843 1_1:+75042852 None:intergenic
GGTGTCTCTGGAGACACTGA+CGG 0.598433 1_1:-75041386 Msa0043680:CDS
ATTAAACACACTCCTACCAA+AGG 0.609468 1_1:+75037555 None:intergenic
GTGTGATTAACCCATCAGGA+AGG 0.611754 1_1:-75041357 Msa0043680:CDS
TTGAATGGAGAAGCGAGAGA+GGG 0.622388 1_1:+75042853 None:intergenic
CTTCTTGGCGAAGTATTCGT+CGG 0.627986 1_1:+75037864 None:intergenic
ACGGCCAGGAATCACAGTGA+TGG 0.630385 1_1:+75037930 None:intergenic
TGTGATTAACCCATCAGGAA+GGG 0.634878 1_1:-75041356 Msa0043680:CDS
TCTGGACCTGGTATCATGAG+AGG 0.634957 1_1:-75042503 Msa0043680:CDS
ATGTAGTTTCTTGTACAAGG+TGG 0.636574 1_1:-75037472 Msa0043680:three_prime_UTR
TCAAAACCTCTCATGATACC+AGG 0.646172 1_1:+75042497 None:intergenic
CTATGTCTACCAGATTGATG+TGG 0.650882 1_1:+75041437 None:intergenic
TTAACCCATCAGGAAGGGAA+CGG 0.658603 1_1:-75041351 Msa0043680:CDS
AGATGCTGGATTTCAAGAAG+GGG 0.662527 1_1:-75041413 Msa0043680:CDS
ACAACTCGCTCCTTGTCCTG+CGG 0.686055 1_1:+75042556 None:intergenic
AAACTTAGAGGAATTGCAGG+AGG 0.696930 1_1:-75042440 Msa0043680:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTAAATGTACATTTA+GGG + chr1_1:75039807-75039826 None:intergenic 10.0%
!!! TTTTAATTAAATGTACATTT+AGG + chr1_1:75039808-75039827 None:intergenic 10.0%
!!! TACACAATATATTTTTAAAA+AGG - chr1_1:75042305-75042324 Msa0043680:intron 10.0%
!! AATTTCAACAATAAAACAAT+AGG + chr1_1:75038007-75038026 None:intergenic 15.0%
!! GAATTATATTAGGATAATTT+AGG - chr1_1:75038392-75038411 Msa0043680:intron 15.0%
!!! AAAAGCAATTATTTTATGAA+AGG - chr1_1:75038783-75038802 Msa0043680:intron 15.0%
!!! GATTATTTTAGATTAACTAT+AGG + chr1_1:75039600-75039619 None:intergenic 15.0%
!!! TATTAATCTTTTTCACTTTA+AGG - chr1_1:75041209-75041228 Msa0043680:intron 15.0%
!!! TCTAATATCATTTAGAATTT+TGG - chr1_1:75041674-75041693 Msa0043680:intron 15.0%
!!! TTCTTTTCAAGATATTTTAA+TGG + chr1_1:75042769-75042788 None:intergenic 15.0%
!!! GTGTGTTTAATTTTATAATA+AGG - chr1_1:75042847-75042866 Msa0043680:intron 15.0%
!! TATGAGAAAATGAAATGAAA+TGG + chr1_1:75037576-75037595 None:intergenic 20.0%
!!! ACCATTGATTTTATATTTGT+AGG - chr1_1:75037610-75037629 Msa0043680:three_prime_UTR 20.0%
!!! CCATTGATTTTATATTTGTA+GGG - chr1_1:75037611-75037630 Msa0043680:three_prime_UTR 20.0%
!!! GAAAATAATGTTTTCAACTA+TGG - chr1_1:75038044-75038063 Msa0043680:intron 20.0%
!! AACAAAACATCGTAAAAAAA+GGG + chr1_1:75038320-75038339 None:intergenic 20.0%
!! TAACAAAACATCGTAAAAAA+AGG + chr1_1:75038321-75038340 None:intergenic 20.0%
!!! GGATTTTGTTGAATTATATT+AGG - chr1_1:75038382-75038401 Msa0043680:intron 20.0%
!!! CTTTGAAAATCTACATATTA+GGG + chr1_1:75038572-75038591 None:intergenic 20.0%
!!! TCTTTGAAAATCTACATATT+AGG + chr1_1:75038573-75038592 None:intergenic 20.0%
!!! TTCACTTTTAAAAACAAATG+AGG - chr1_1:75039185-75039204 Msa0043680:intron 20.0%
!! TTTCATATTATGCCTTTAAT+CGG - chr1_1:75039299-75039318 Msa0043680:intron 20.0%
!! AAAGAGTTAAAGTTAGTTAA+TGG - chr1_1:75039457-75039476 Msa0043680:intron 20.0%
!!! TATTTTCAACAAGAGAAATA+AGG - chr1_1:75039636-75039655 Msa0043680:intron 20.0%
!! AAATATCAATTTCTGTCTAT+TGG - chr1_1:75039825-75039844 Msa0043680:intron 20.0%
!! TACCAGATAGAATATTTAAA+AGG - chr1_1:75040245-75040264 Msa0043680:intron 20.0%
!! ACCAGATAGAATATTTAAAA+GGG - chr1_1:75040246-75040265 Msa0043680:intron 20.0%
!! GAGAATTCAAGAATATAAAA+TGG - chr1_1:75040393-75040412 Msa0043680:intron 20.0%
!!! ATTTCTAAAGTGATATTTAG+CGG - chr1_1:75041946-75041965 Msa0043680:intron 20.0%
!!! TTATCAAAAAAGGTGTAATT+TGG - chr1_1:75042885-75042904 Msa0043680:CDS 20.0%
! CCCTACAAATATAAAATCAA+TGG + chr1_1:75037614-75037633 None:intergenic 25.0%
! TTATTAACAACAAAAACACG+AGG + chr1_1:75037701-75037720 None:intergenic 25.0%
!!! TCGTGTTTTTGTTGTTAATA+AGG - chr1_1:75037700-75037719 Msa0043680:three_prime_UTR 25.0%
!! AATAATGTTTTCAACTATGG+TGG - chr1_1:75038047-75038066 Msa0043680:intron 25.0%
! TTGACATTGTAATTCAATGA+TGG - chr1_1:75038080-75038099 Msa0043680:intron 25.0%
! TTAGTCTATATACTACCAAA+TGG - chr1_1:75038182-75038201 Msa0043680:intron 25.0%
! TAGTCTATATACTACCAAAT+GGG - chr1_1:75038183-75038202 Msa0043680:intron 25.0%
! TCATTAGTAGGAAAAAACAA+TGG - chr1_1:75038459-75038478 Msa0043680:intron 25.0%
! CATTTCAAGATGTCAATAAA+GGG + chr1_1:75038610-75038629 None:intergenic 25.0%
!!! TTTTGAAATGAAATCATGGA+AGG + chr1_1:75038767-75038786 None:intergenic 25.0%
!!! TTGCTTTTGAAATGAAATCA+TGG + chr1_1:75038771-75038790 None:intergenic 25.0%
!!! CTTTTAAAAACAAATGAGGA+TGG - chr1_1:75039189-75039208 Msa0043680:intron 25.0%
! AGAAGTCTTTCTTGATATAT+GGG + chr1_1:75039231-75039250 None:intergenic 25.0%
!! TAAGTTCAAACGCAATATTT+TGG - chr1_1:75039371-75039390 Msa0043680:intron 25.0%
!! GAATTTGAAACTGTAAAAGT+TGG - chr1_1:75039412-75039431 Msa0043680:intron 25.0%
! TGTAAAAGTTGGAATATAAG+AGG - chr1_1:75039423-75039442 Msa0043680:intron 25.0%
!! TAAAGTTAGTTAATGGATGT+TGG - chr1_1:75039464-75039483 Msa0043680:intron 25.0%
!! AAAGTTAGTTAATGGATGTT+GGG - chr1_1:75039465-75039484 Msa0043680:intron 25.0%
! CTCTTGTTGAAAATATGTTT+AGG + chr1_1:75039631-75039650 None:intergenic 25.0%
! TGTTGTCTATAAATAAGAAG+AGG - chr1_1:75039661-75039680 Msa0043680:intron 25.0%
! GTTGTCTATAAATAAGAAGA+GGG - chr1_1:75039662-75039681 Msa0043680:intron 25.0%
!!! TCTTGTCATTTTAGTATAGT+CGG - chr1_1:75039708-75039727 Msa0043680:intron 25.0%
! GTATATCATTGAAGATTATG+TGG - chr1_1:75039875-75039894 Msa0043680:intron 25.0%
!!! GAGGTATTTTCATATGAAAT+AGG - chr1_1:75039993-75040012 Msa0043680:intron 25.0%
!! TTTTCATATGAAATAGGTGT+TGG - chr1_1:75039999-75040018 Msa0043680:intron 25.0%
! TTTCATATGAAATAGGTGTT+GGG - chr1_1:75040000-75040019 Msa0043680:intron 25.0%
! TGATGTGTCATAATGTTATT+AGG - chr1_1:75040105-75040124 Msa0043680:intron 25.0%
!! ACCCTTTTAAATATTCTATC+TGG + chr1_1:75040250-75040269 None:intergenic 25.0%
!! TTAAAAGGGTTTTTCTTGAA+AGG - chr1_1:75040260-75040279 Msa0043680:intron 25.0%
! AATAAAAAAGATTACCGAAC+AGG - chr1_1:75040498-75040517 Msa0043680:intron 25.0%
! ATAAAAAAGATTACCGAACA+GGG - chr1_1:75040499-75040518 Msa0043680:intron 25.0%
! AAAAGGAAAAGATGTCTTTA+TGG - chr1_1:75040573-75040592 Msa0043680:intron 25.0%
! AAAGGAAAAGATGTCTTTAT+GGG - chr1_1:75040574-75040593 Msa0043680:intron 25.0%
! TGTCAGATTCTAAACATATT+TGG + chr1_1:75040805-75040824 None:intergenic 25.0%
!!! TCTTTTTCACTTTAAGGATA+AGG - chr1_1:75041215-75041234 Msa0043680:intron 25.0%
!!! TCTTGTATTTTTAATAGAGC+TGG - chr1_1:75041373-75041392 Msa0043680:CDS 25.0%
!!! CTTGTATTTTTAATAGAGCT+GGG - chr1_1:75041374-75041393 Msa0043680:CDS 25.0%
!!! AATTCTATTTCTAAGTTGGT+TGG + chr1_1:75041428-75041447 None:intergenic 25.0%
!! TTCGTAGATATGAAAAGTAT+TGG + chr1_1:75041914-75041933 None:intergenic 25.0%
!! AATATTTTCCTGAGTTTATG+AGG + chr1_1:75042151-75042170 None:intergenic 25.0%
! CAATTTCAAACAACTTATAC+AGG - chr1_1:75042188-75042207 Msa0043680:intron 25.0%
! TTGCATATTTAAACAGAATC+TGG + chr1_1:75042573-75042592 None:intergenic 25.0%
! ATCAATCATCATCAACAAAT+TGG - chr1_1:75042611-75042630 Msa0043680:CDS 25.0%
!! AACAAATTGGTTTCTTCTTT+AGG - chr1_1:75042624-75042643 Msa0043680:CDS 25.0%
! GAGAAAACTTCAATACAAAA+AGG + chr1_1:75042690-75042709 None:intergenic 25.0%
!! TTTTGTATTGAAGTTTTCTC+TGG - chr1_1:75042690-75042709 Msa0043680:CDS 25.0%
GGAAATAGAAATACCTTGAA+TGG + chr1_1:75037555-75037574 None:intergenic 30.0%
TTAAGACATGGACATAGATA+TGG + chr1_1:75037662-75037681 None:intergenic 30.0%
!!! ATTCGCTGAATTTTAAGACA+TGG + chr1_1:75037674-75037693 None:intergenic 30.0%
! AATATAATTTGCCCGCTAAT+AGG - chr1_1:75038291-75038310 Msa0043680:intron 30.0%
! TAATTTAGGATCCTACTGTT+AGG - chr1_1:75038406-75038425 Msa0043680:intron 30.0%
! AATTTAGGATCCTACTGTTA+GGG - chr1_1:75038407-75038426 Msa0043680:intron 30.0%
ATGACTTTCAAATGTGATGT+AGG + chr1_1:75038506-75038525 None:intergenic 30.0%
GATATATACAACAGCATATC+CGG + chr1_1:75038550-75038569 None:intergenic 30.0%
CCATTTCAAGATGTCAATAA+AGG + chr1_1:75038611-75038630 None:intergenic 30.0%
CCTTTATTGACATCTTGAAA+TGG - chr1_1:75038608-75038627 Msa0043680:intron 30.0%
TTATTGTCTGAAGAGAATCA+TGG - chr1_1:75038634-75038653 Msa0043680:intron 30.0%
!! AAATTTAGGTATTGGAAGCT+TGG + chr1_1:75038674-75038693 None:intergenic 30.0%
AGGAAGAGAAATTTAGGTAT+TGG + chr1_1:75038682-75038701 None:intergenic 30.0%
AATGAAATCATGGAAGGATA+TGG + chr1_1:75038761-75038780 None:intergenic 30.0%
TTTCTTTCATTCTTTGTCGT+AGG - chr1_1:75038808-75038827 Msa0043680:intron 30.0%
AGATTGATGTGGACATATTT+CGG + chr1_1:75038945-75038964 None:intergenic 30.0%
!! ACACATTACTTGTTGGTTTA+TGG - chr1_1:75039079-75039098 Msa0043680:intron 30.0%
ACATGTAAGACAACAACTAA+GGG + chr1_1:75039120-75039139 None:intergenic 30.0%
AACATGTAAGACAACAACTA+AGG + chr1_1:75039121-75039140 None:intergenic 30.0%
! ATTGTTTTCATGATGTCTAG+AGG - chr1_1:75039151-75039170 Msa0043680:intron 30.0%
GAAGTCTTTCTTGATATATG+GGG + chr1_1:75039230-75039249 None:intergenic 30.0%
CAGAAGTCTTTCTTGATATA+TGG + chr1_1:75039232-75039251 None:intergenic 30.0%
ACTTTATTCACGATAGACAA+GGG + chr1_1:75039264-75039283 None:intergenic 30.0%
AACTTTATTCACGATAGACA+AGG + chr1_1:75039265-75039284 None:intergenic 30.0%
AACCAAAATTCTCCGATTAA+AGG + chr1_1:75039314-75039333 None:intergenic 30.0%
ACTTTAACTCTTTCAACCAA+CGG + chr1_1:75039450-75039469 None:intergenic 30.0%
TTTCTTTGAGCCTTACAAAA+CGG + chr1_1:75039536-75039555 None:intergenic 30.0%
TATAAATAAGAAGAGGGCTT+AGG - chr1_1:75039668-75039687 Msa0043680:intron 30.0%
!!! CTTGTCATTTTAGTATAGTC+GGG - chr1_1:75039709-75039728 Msa0043680:intron 30.0%
!!! TTGTCATTTTAGTATAGTCG+GGG - chr1_1:75039710-75039729 Msa0043680:intron 30.0%
TTAGGGAAAATTTCCTTGTA+TGG + chr1_1:75039790-75039809 None:intergenic 30.0%
ATTTCTGTCTATTGGTATCA+AGG - chr1_1:75039833-75039852 Msa0043680:intron 30.0%
! AATAAGAATAAAGGCACACA+TGG - chr1_1:75039902-75039921 Msa0043680:intron 30.0%
! TAACCCATTTGGTATTTTGT+TGG - chr1_1:75040151-75040170 Msa0043680:intron 30.0%
! AACCCATTTGGTATTTTGTT+GGG - chr1_1:75040152-75040171 Msa0043680:intron 30.0%
TACCCAACAAAATACCAAAT+GGG + chr1_1:75040157-75040176 None:intergenic 30.0%
ATACCCAACAAAATACCAAA+TGG + chr1_1:75040158-75040177 None:intergenic 30.0%
AAATGAGTGAAGAAAAGAGT+CGG - chr1_1:75040348-75040367 Msa0043680:intron 30.0%
AAATGGAGAAGTAAGAAGAA+AGG - chr1_1:75040410-75040429 Msa0043680:intron 30.0%
AAGAAGAAAGGTGAAAGAAA+TGG - chr1_1:75040422-75040441 Msa0043680:intron 30.0%
TAAAAAAGATTACCGAACAG+GGG - chr1_1:75040500-75040519 Msa0043680:intron 30.0%
CAGAGTTTCACAATTTGTAA+TGG + chr1_1:75040697-75040716 None:intergenic 30.0%
!! TAAACATGAAGATGGATTGT+TGG - chr1_1:75040904-75040923 Msa0043680:intron 30.0%
TGTTGGATTGTATTTCAAAG+AGG - chr1_1:75040921-75040940 Msa0043680:intron 30.0%
AAGACTTCCTTTATAAGAAG+AGG - chr1_1:75040989-75041008 Msa0043680:intron 30.0%
GTATCTACCTCTTCTTATAA+AGG + chr1_1:75040999-75041018 None:intergenic 30.0%
TGCTCTACATGAATAATACT+TGG + chr1_1:75041031-75041050 None:intergenic 30.0%
AACTACTACATCAAGCTAAA+AGG - chr1_1:75041128-75041147 Msa0043680:intron 30.0%
ACTACTACATCAAGCTAAAA+GGG - chr1_1:75041129-75041148 Msa0043680:intron 30.0%
TGCTGTCTATATATAAGAAG+AGG - chr1_1:75041336-75041355 Msa0043680:CDS 30.0%
TATATATAAGAAGAGGCTGA+AGG - chr1_1:75041343-75041362 Msa0043680:CDS 30.0%
!! GAGCAATTCTATTTCTAAGT+TGG + chr1_1:75041432-75041451 None:intergenic 30.0%
CAAACATGCATAAACTTCTA+GGG - chr1_1:75041577-75041596 Msa0043680:intron 30.0%
! TCTAGCATCATGAATTTTGT+TGG - chr1_1:75042012-75042031 Msa0043680:intron 30.0%
AGAAGAGCTCTTTCAAATAA+TGG + chr1_1:75042123-75042142 None:intergenic 30.0%
ATTATTTGAAAGAGCTCTTC+TGG - chr1_1:75042122-75042141 Msa0043680:intron 30.0%
ACTTCTAATTAGTCATGCAT+TGG - chr1_1:75042232-75042251 Msa0043680:intron 30.0%
CTTCTAATTAGTCATGCATT+GGG - chr1_1:75042233-75042252 Msa0043680:intron 30.0%
!! AATAATAGTTTGTTGTGCTC+TGG - chr1_1:75042337-75042356 Msa0043680:intron 30.0%
!!! CCTTTTTTGATAAAGACACA+AGG + chr1_1:75042878-75042897 None:intergenic 30.0%
CCTTGTGTCTTTATCAAAAA+AGG - chr1_1:75042875-75042894 Msa0043680:CDS 30.0%
GTTATGTAGTTTCTTGTACA+AGG - chr1_1:75042915-75042934 Msa0043680:five_prime_UTR 30.0%
CATCATTGAACAGTGAAATA+AGG + chr1_1:75042968-75042987 None:intergenic 30.0%
CTCTGTCAAAATGGAACAAA+CGG + chr1_1:75037445-75037464 None:intergenic 35.0%
!! TAGATATGGTTTTGCTACCA+AGG + chr1_1:75037648-75037667 None:intergenic 35.0%
AAGAAAGAGAGCAAAGAGAA+AGG - chr1_1:75037799-75037818 Msa0043680:three_prime_UTR 35.0%
AGAAAGAGAGCAAAGAGAAA+GGG - chr1_1:75037800-75037819 Msa0043680:three_prime_UTR 35.0%
ATCTCTTCTTACACAACACT+TGG - chr1_1:75037974-75037993 Msa0043680:CDS 35.0%
TCTCTTCTTACACAACACTT+GGG - chr1_1:75037975-75037994 Msa0043680:CDS 35.0%
AAAAAAGGGCAACCTATTAG+CGG + chr1_1:75038306-75038325 None:intergenic 35.0%
! TGTGAAGCATTATGATGCTA+CGG + chr1_1:75038350-75038369 None:intergenic 35.0%
TAGCATCATAATGCTTCACA+TGG - chr1_1:75038350-75038369 Msa0043680:intron 35.0%
TGCTTCACATGGAGTTTAAA+TGG - chr1_1:75038361-75038380 Msa0043680:intron 35.0%
CTACTTGTAGCATCATTAGT+AGG - chr1_1:75038447-75038466 Msa0043680:intron 35.0%
TCATGAAGTATGCCTATTAC+AGG - chr1_1:75038522-75038541 Msa0043680:intron 35.0%
TGAAGAGAATCATGGCATTA+TGG - chr1_1:75038642-75038661 Msa0043680:intron 35.0%
GAACTGAGGAAGAGAAATTT+AGG + chr1_1:75038688-75038707 None:intergenic 35.0%
GTCAAGCATAATAAGAACTG+AGG + chr1_1:75038702-75038721 None:intergenic 35.0%
GAAGGATATGGAAGAATAAG+GGG + chr1_1:75038749-75038768 None:intergenic 35.0%
GGAAGGATATGGAAGAATAA+GGG + chr1_1:75038750-75038769 None:intergenic 35.0%
TGGAAGGATATGGAAGAATA+AGG + chr1_1:75038751-75038770 None:intergenic 35.0%
GTATATGCATAAATCTCGCT+TGG - chr1_1:75038850-75038869 Msa0043680:intron 35.0%
ACATAATAAGGTATGCATGC+TGG - chr1_1:75038915-75038934 Msa0043680:intron 35.0%
GAAATATGTCCACATCAATC+TGG - chr1_1:75038944-75038963 Msa0043680:intron 35.0%
AAGATGCTGGATTTCAAGAA+GGG - chr1_1:75038976-75038995 Msa0043680:intron 35.0%
! TGAAGGTACACATTACTTGT+TGG - chr1_1:75039072-75039091 Msa0043680:intron 35.0%
! TTCTTGATATATGGGGTACT+AGG + chr1_1:75039223-75039242 None:intergenic 35.0%
CAAGAAAGACTTCTGATATG+AGG - chr1_1:75039237-75039256 Msa0043680:intron 35.0%
! TGCCTTTAATCGGAGAATTT+TGG - chr1_1:75039309-75039328 Msa0043680:intron 35.0%
!! GTTCAAACGCAATATTTTGG+TGG - chr1_1:75039374-75039393 Msa0043680:intron 35.0%
! ATAATCGAGTCCGTTTTGTA+AGG - chr1_1:75039523-75039542 Msa0043680:intron 35.0%
!!! TGTCATTTTAGTATAGTCGG+GGG - chr1_1:75039711-75039730 Msa0043680:intron 35.0%
GGAAAACTACAGAACTTCAA+AGG + chr1_1:75039769-75039788 None:intergenic 35.0%
! GTTCTGTAGTTTTCCATACA+AGG - chr1_1:75039774-75039793 Msa0043680:intron 35.0%
TGTGGCGTGAATAAGAATAA+AGG - chr1_1:75039893-75039912 Msa0043680:intron 35.0%
GTGAGGAAGTAATTTCAGTT+GGG - chr1_1:75039937-75039956 Msa0043680:intron 35.0%
TGAGGAAGTAATTTCAGTTG+GGG - chr1_1:75039938-75039957 Msa0043680:intron 35.0%
CAAGGATCAATTTGACATAC+AGG - chr1_1:75040204-75040223 Msa0043680:intron 35.0%
ATCAATTTGACATACAGGTC+AGG - chr1_1:75040209-75040228 Msa0043680:intron 35.0%
! AAGGGTTTTTCTTGAAAGGA+CGG - chr1_1:75040264-75040283 Msa0043680:intron 35.0%
ACTATTGGAGGAGATGAATT+TGG - chr1_1:75040315-75040334 Msa0043680:intron 35.0%
GAAATGGAGTGAAATGACTA+TGG - chr1_1:75040438-75040457 Msa0043680:intron 35.0%
! CTTTTCATTCCACTTCTGTT+AGG + chr1_1:75040558-75040577 None:intergenic 35.0%
CTAACAGAAGTGGAATGAAA+AGG - chr1_1:75040556-75040575 Msa0043680:intron 35.0%
TGTCACATCATTGTTGAATG+CGG - chr1_1:75040632-75040651 Msa0043680:intron 35.0%
!! TTTGTACAAGAGCACACTTT+TGG + chr1_1:75040664-75040683 None:intergenic 35.0%
! AAAAGTGTGCTCTTGTACAA+AGG - chr1_1:75040663-75040682 Msa0043680:intron 35.0%
AATCTGACAACTTCAACCTT+TGG - chr1_1:75040816-75040835 Msa0043680:intron 35.0%
ATCTGACAACTTCAACCTTT+GGG - chr1_1:75040817-75040836 Msa0043680:intron 35.0%
TTCATGTTTAGCAACAGCAT+AGG + chr1_1:75040894-75040913 None:intergenic 35.0%
ATTGATGAGAGGCAGATTAA+TGG - chr1_1:75040964-75040983 Msa0043680:intron 35.0%
TTGATACACCTGTTAGTTGA+AGG - chr1_1:75041258-75041277 Msa0043680:intron 35.0%
TGAGTTAAGCTTGTAGTTTG+TGG - chr1_1:75041285-75041304 Msa0043680:intron 35.0%
! GAGTTAAGCTTGTAGTTTGT+GGG - chr1_1:75041286-75041305 Msa0043680:intron 35.0%
!! TTTCTAAGTTGGTTGGAAGA+GGG + chr1_1:75041421-75041440 None:intergenic 35.0%
!! ATTTCTAAGTTGGTTGGAAG+AGG + chr1_1:75041422-75041441 None:intergenic 35.0%
! TTTTCCTTCACAAGGCTTAT+AGG + chr1_1:75041510-75041529 None:intergenic 35.0%
!!! GCATGTTATTTTCCTTCACA+AGG + chr1_1:75041518-75041537 None:intergenic 35.0%
GTGAAGGAAAATAACATGCT+CGG - chr1_1:75041519-75041538 Msa0043680:intron 35.0%
GCAAACATGCATAAACTTCT+AGG - chr1_1:75041576-75041595 Msa0043680:intron 35.0%
GCATTCTTTACCTTACAAAC+TGG + chr1_1:75041719-75041738 None:intergenic 35.0%
AAAGAAACTGTAGCATGTTC+TGG - chr1_1:75041972-75041991 Msa0043680:intron 35.0%
ACATATAATACGCTACCAAG+TGG - chr1_1:75042064-75042083 Msa0043680:intron 35.0%
CATATAATACGCTACCAAGT+GGG - chr1_1:75042065-75042084 Msa0043680:intron 35.0%
ATGGCTTAACCCATTTCTTA+CGG + chr1_1:75042482-75042501 None:intergenic 35.0%
ATTAAACACACTCCTACCAA+AGG + chr1_1:75042838-75042857 None:intergenic 35.0%
ATGTAGTTTCTTGTACAAGG+TGG - chr1_1:75042918-75042937 Msa0043680:five_prime_UTR 35.0%
!! CATTTTGACAGAGTGAAGAG+CGG - chr1_1:75037452-75037471 Msa0043680:three_prime_UTR 40.0%
CTTCTCTTATTCCTGTTTCC+TGG - chr1_1:75037511-75037530 Msa0043680:three_prime_UTR 40.0%
GTAGGGAAATGTGAAAACCT+TGG - chr1_1:75037628-75037647 Msa0043680:three_prime_UTR 40.0%
TAATAAGGCTGCTTCTGCTT+CGG - chr1_1:75037715-75037734 Msa0043680:three_prime_UTR 40.0%
AACCAGCAGGTGAAAATGTT+CGG - chr1_1:75037741-75037760 Msa0043680:three_prime_UTR 40.0%
CAGGTGAAAATGTTCGGTTT+CGG - chr1_1:75037747-75037766 Msa0043680:three_prime_UTR 40.0%
TGAAAATGTTCGGTTTCGGT+TGG - chr1_1:75037751-75037770 Msa0043680:three_prime_UTR 40.0%
TTTGCTCTCTTTCTTGAACC+TGG + chr1_1:75037794-75037813 None:intergenic 40.0%
!!! AGTTGTGGTTTTGGAATGAG+AGG - chr1_1:75037851-75037870 Msa0043680:CDS 40.0%
AGAGGTCAAAAATCTCGATC+TGG - chr1_1:75037869-75037888 Msa0043680:CDS 40.0%
TCAAAACCTCTCATGATACC+AGG + chr1_1:75037896-75037915 None:intergenic 40.0%
!! GGTATCATGAGAGGTTTTGA+AGG - chr1_1:75037896-75037915 Msa0043680:CDS 40.0%
!!! ATCATGAGAGGTTTTGAAGG+TGG - chr1_1:75037899-75037918 Msa0043680:CDS 40.0%
CCTGCAATTCCTCTAAGTTT+GGG + chr1_1:75037950-75037969 None:intergenic 40.0%
TCCTGCAATTCCTCTAAGTT+TGG + chr1_1:75037951-75037970 None:intergenic 40.0%
AAACTTAGAGGAATTGCAGG+AGG - chr1_1:75037950-75037969 Msa0043680:CDS 40.0%
AAAAAGGGCAACCTATTAGC+GGG + chr1_1:75038305-75038324 None:intergenic 40.0%
CTATGTCTACCAGATTGATG+TGG + chr1_1:75038956-75038975 None:intergenic 40.0%
GAAGATGCTGGATTTCAAGA+AGG - chr1_1:75038975-75038994 Msa0043680:intron 40.0%
AGATGCTGGATTTCAAGAAG+GGG - chr1_1:75038977-75038996 Msa0043680:intron 40.0%
AAACGTGTGATTAACCCATC+AGG - chr1_1:75039029-75039048 Msa0043680:intron 40.0%
TGTGATTAACCCATCAGGAA+GGG - chr1_1:75039034-75039053 Msa0043680:intron 40.0%
GGAACGGAAACTTCTATTGA+AGG - chr1_1:75039055-75039074 Msa0043680:intron 40.0%
TTGGAATATAAGAGGTCCGT+TGG - chr1_1:75039431-75039450 Msa0043680:intron 40.0%
GATTATGCGGTTGAGAAACA+CGG + chr1_1:75039509-75039528 None:intergenic 40.0%
! ACAAAACGGACTCGATTATG+CGG + chr1_1:75039522-75039541 None:intergenic 40.0%
ATATACTCCCAACTCCTTGA+TGG + chr1_1:75039861-75039880 None:intergenic 40.0%
GGTGAGGAAGTAATTTCAGT+TGG - chr1_1:75039936-75039955 Msa0043680:intron 40.0%
GTTGGATCAACAAGTTTGAG+AGG - chr1_1:75039974-75039993 Msa0043680:intron 40.0%
!! CATATGAAATAGGTGTTGGG+AGG - chr1_1:75040003-75040022 Msa0043680:intron 40.0%
ATAAGTCATCTGTGTAGCCA+TGG - chr1_1:75040035-75040054 Msa0043680:intron 40.0%
AAACAAAGCTTGTCCTTCCA+TGG + chr1_1:75040055-75040074 None:intergenic 40.0%
TTATGACACATCACCCAAGT+CGG + chr1_1:75040098-75040117 None:intergenic 40.0%
!! AATGGGTTACGAATCATGGA+TGG + chr1_1:75040140-75040159 None:intergenic 40.0%
TCCATGATTCGTAACCCATT+TGG - chr1_1:75040140-75040159 Msa0043680:intron 40.0%
!! ACCAAATGGGTTACGAATCA+TGG + chr1_1:75040144-75040163 None:intergenic 40.0%
TTTGTTGGGTATGAAGCAAG+AGG - chr1_1:75040166-75040185 Msa0043680:intron 40.0%
TTGTTGGGTATGAAGCAAGA+GGG - chr1_1:75040167-75040186 Msa0043680:intron 40.0%
AAATGACTATGGCATGGAAG+TGG - chr1_1:75040449-75040468 Msa0043680:intron 40.0%
! TTTTTATTCTCCTCTGCCCT+AGG + chr1_1:75040486-75040505 None:intergenic 40.0%
GGAAAAGATGTCTTTATGGG+TGG - chr1_1:75040577-75040596 Msa0043680:intron 40.0%
GAACCAATGAAGAACAAAGC+TGG - chr1_1:75040599-75040618 Msa0043680:intron 40.0%
!! CTTCCAGCTTTGTTCTTCAT+TGG + chr1_1:75040605-75040624 None:intergenic 40.0%
CATTAGGTCTTCATGCATGT+AGG + chr1_1:75040721-75040740 None:intergenic 40.0%
ATACGAGATTCGTTGTTCGA+TGG + chr1_1:75040748-75040767 None:intergenic 40.0%
AGTAGCCAAGGTGATATCAA+AGG - chr1_1:75040768-75040787 Msa0043680:intron 40.0%
CTTTGCCTTTGATATCACCT+TGG + chr1_1:75040776-75040795 None:intergenic 40.0%
TGAGCTTGAAGATGAAGTTG+TGG - chr1_1:75040846-75040865 Msa0043680:intron 40.0%
GAGCTTGAAGATGAAGTTGT+GGG - chr1_1:75040847-75040866 Msa0043680:intron 40.0%
AGCTTGAAGATGAAGTTGTG+GGG - chr1_1:75040848-75040867 Msa0043680:intron 40.0%
GCTGTTGCTAAACATGAAGA+TGG - chr1_1:75040896-75040915 Msa0043680:intron 40.0%
AGAGCAACACAAAGTTTGAG+AGG - chr1_1:75041045-75041064 Msa0043680:intron 40.0%
AAAGAGTTCTTTGGCATGAC+TGG - chr1_1:75041083-75041102 Msa0043680:intron 40.0%
AAGAGTTCTTTGGCATGACT+GGG - chr1_1:75041084-75041103 Msa0043680:intron 40.0%
AGGATAAGGTGAAACTTGAG+AGG - chr1_1:75041229-75041248 Msa0043680:intron 40.0%
CTCAAACTCCTTCAACTAAC+AGG + chr1_1:75041269-75041288 None:intergenic 40.0%
GTTTCGGCAAAAAACCTTAC+CGG - chr1_1:75041474-75041493 Msa0043680:intron 40.0%
CAAAAAACCTTACCGGAAGA+TGG - chr1_1:75041481-75041500 Msa0043680:intron 40.0%
GAAAATAACATGCTCGGCAA+CGG - chr1_1:75041525-75041544 Msa0043680:intron 40.0%
!! GTTCTGGATCCAGGTTTTTA+GGG + chr1_1:75041623-75041642 None:intergenic 40.0%
!! ACCTTACAAACTGGTCTTGT+CGG + chr1_1:75041710-75041729 None:intergenic 40.0%
AAGAATGCCCAAGCTCTATT+TGG - chr1_1:75041731-75041750 Msa0043680:intron 40.0%
AGAATGCCCAAGCTCTATTT+GGG - chr1_1:75041732-75041751 Msa0043680:intron 40.0%
! AGGACTGAATATTTGGAGTG+AGG + chr1_1:75041772-75041791 None:intergenic 40.0%
CACACTCAGGACTGAATATT+TGG + chr1_1:75041779-75041798 None:intergenic 40.0%
! TCTGGTTTCCTCATAAACTC+AGG - chr1_1:75042140-75042159 Msa0043680:intron 40.0%
!!! GCAAGATTTTTGGCAACTGA+TGG + chr1_1:75042501-75042520 None:intergenic 40.0%
GATACCGAAAGTTCTTGGTT+CGG - chr1_1:75042940-75042959 Msa0043680:five_prime_UTR 40.0%
CGCTCTTCACTCTGTCAAAA+TGG + chr1_1:75037454-75037473 None:intergenic 45.0%
TTGAATGGAGAAGCGAGAGA+GGG + chr1_1:75037540-75037559 None:intergenic 45.0%
! AACCGAACATTTTCACCTGC+TGG + chr1_1:75037746-75037765 None:intergenic 45.0%
TCGGTTTCGGTTGGACAATT+TGG - chr1_1:75037760-75037779 Msa0043680:three_prime_UTR 45.0%
CGGTTTCGGTTGGACAATTT+GGG - chr1_1:75037761-75037780 Msa0043680:three_prime_UTR 45.0%
CTCTTTCTTGAACCTGGTTG+TGG + chr1_1:75037788-75037807 None:intergenic 45.0%
AGAGCAAAGAGAAAGGGAAG+AGG - chr1_1:75037806-75037825 Msa0043680:three_prime_UTR 45.0%
CAAAAATCTCGATCTGGACC+TGG - chr1_1:75037875-75037894 Msa0043680:CDS 45.0%
TTGGGCAATCGTCGATAAAG+TGG + chr1_1:75037932-75037951 None:intergenic 45.0%
CCCAAACTTAGAGGAATTGC+AGG - chr1_1:75037947-75037966 Msa0043680:CDS 45.0%
ATTGCGCAAAAGCTCCCATT+TGG + chr1_1:75038200-75038219 None:intergenic 45.0%
CTTGATCACTCCCTAACAGT+AGG + chr1_1:75038420-75038439 None:intergenic 45.0%
AGTATGCCTATTACAGGAGC+CGG - chr1_1:75038528-75038547 Msa0043680:intron 45.0%
CTGGTAGACATAGAAGATGC+TGG - chr1_1:75038963-75038982 Msa0043680:intron 45.0%
TGGATTTCAAGAAGGGGAAG+AGG - chr1_1:75038983-75039002 Msa0043680:intron 45.0%
GTGTGATTAACCCATCAGGA+AGG - chr1_1:75039033-75039052 Msa0043680:intron 45.0%
TTAACCCATCAGGAAGGGAA+CGG - chr1_1:75039039-75039058 Msa0043680:intron 45.0%
AAGAGGGCTTAGGTTTGAGA+GGG - chr1_1:75039678-75039697 Msa0043680:intron 45.0%
CTTCTCTACTCCCTATACCA+AGG + chr1_1:75039738-75039757 None:intergenic 45.0%
TTGGTATCAAGGCTCCATCA+AGG - chr1_1:75039844-75039863 Msa0043680:intron 45.0%
! AAAGGCACACATGGATGTCA+TGG - chr1_1:75039911-75039930 Msa0043680:intron 45.0%
AATGCTCCAAAACCCGACTT+GGG - chr1_1:75040082-75040101 Msa0043680:intron 45.0%
TATGACACATCACCCAAGTC+GGG + chr1_1:75040097-75040116 None:intergenic 45.0%
AGATTGAAGCTACCCTTGGA+CGG - chr1_1:75040289-75040308 Msa0043680:intron 45.0%
GAGTGAAGAAAAGAGTCGGT+CGG - chr1_1:75040352-75040371 Msa0043680:intron 45.0%
AAGAAAAGAGTCGGTCGGTT+TGG - chr1_1:75040357-75040376 Msa0043680:intron 45.0%
GGAGTGAAATGACTATGGCA+TGG - chr1_1:75040443-75040462 Msa0043680:intron 45.0%
! GCATGGAAGTGGAAGTTGAT+CGG - chr1_1:75040460-75040479 Msa0043680:intron 45.0%
ACTTCTGTTAGGTTACCAGG+TGG + chr1_1:75040547-75040566 None:intergenic 45.0%
ACCTGGTAACCTAACAGAAG+TGG - chr1_1:75040546-75040565 Msa0043680:intron 45.0%
TCCACTTCTGTTAGGTTACC+AGG + chr1_1:75040550-75040569 None:intergenic 45.0%
CACATCATTGTTGAATGCGG+AGG - chr1_1:75040635-75040654 Msa0043680:intron 45.0%
!! GTACAAGAGCACACTTTTGG+TGG + chr1_1:75040661-75040680 None:intergenic 45.0%
GTGTGCTCTTGTACAAAGGA+TGG - chr1_1:75040667-75040686 Msa0043680:intron 45.0%
!! GTTGTTCGATGGTGGACATT+AGG + chr1_1:75040737-75040756 None:intergenic 45.0%
CGAATCTCGTATAGTAGCCA+AGG - chr1_1:75040756-75040775 Msa0043680:intron 45.0%
TGACAACTTCAACCTTTGGG+TGG - chr1_1:75040820-75040839 Msa0043680:intron 45.0%
CATCAATGCATGAGCCTATG+CGG + chr1_1:75040951-75040970 None:intergenic 45.0%
! TAGGCTCATGCATTGATGAG+AGG - chr1_1:75040953-75040972 Msa0043680:intron 45.0%
GCAACACAAAGTTTGAGAGG+CGG - chr1_1:75041048-75041067 Msa0043680:intron 45.0%
CAACACAAAGTTTGAGAGGC+GGG - chr1_1:75041049-75041068 Msa0043680:intron 45.0%
ACTGGGAGTCAAACTGTCAA+AGG - chr1_1:75041101-75041120 Msa0043680:intron 45.0%
CTGGGAGTCAAACTGTCAAA+GGG - chr1_1:75041102-75041121 Msa0043680:intron 45.0%
GTCTTGCTGCAGCTAGAATA+AGG + chr1_1:75041179-75041198 None:intergenic 45.0%
! TAGCTGCAGCAAGACTGTTT+TGG - chr1_1:75041184-75041203 Msa0043680:intron 45.0%
CCTCCTGTATGGTTCAGTTT+CGG - chr1_1:75041458-75041477 Msa0043680:CDS 45.0%
TTGCCGAAACTGAACCATAC+AGG + chr1_1:75041464-75041483 None:intergenic 45.0%
GCTTATAGGAAGCCATCTTC+CGG + chr1_1:75041496-75041515 None:intergenic 45.0%
! GCTTCCTATAAGCCTTGTGA+AGG - chr1_1:75041503-75041522 Msa0043680:intron 45.0%
!!! TGGATCCAGGTTTTTAGGGT+TGG + chr1_1:75041619-75041638 None:intergenic 45.0%
!!! GGTTCTGGATCCAGGTTTTT+AGG + chr1_1:75041624-75041643 None:intergenic 45.0%
AAATACGCTGTTACCAGAGC+AGG + chr1_1:75041645-75041664 None:intergenic 45.0%
ACCGACAAGACCAGTTTGTA+AGG - chr1_1:75041706-75041725 Msa0043680:intron 45.0%
AGGCTTCCCAAATAGAGCTT+GGG + chr1_1:75041741-75041760 None:intergenic 45.0%
AAGGCTTCCCAAATAGAGCT+TGG + chr1_1:75041742-75041761 None:intergenic 45.0%
! TTTGGAGTGAGGACAAACGA+AGG + chr1_1:75041761-75041780 None:intergenic 45.0%
TATTCAGTCCTGAGTGTGTG+AGG - chr1_1:75041781-75041800 Msa0043680:intron 45.0%
ATTCAGTCCTGAGTGTGTGA+GGG - chr1_1:75041782-75041801 Msa0043680:intron 45.0%
ATACGCTACCAAGTGGGAAA+AGG - chr1_1:75042071-75042090 Msa0043680:intron 45.0%
! TTCCACGCTTTTCGTCACAA+TGG - chr1_1:75042270-75042289 Msa0043680:intron 45.0%
ATCCATTGTGACGAAAAGCG+TGG + chr1_1:75042275-75042294 None:intergenic 45.0%
!! GTTTGTTGTGCTCTGGTTTC+AGG - chr1_1:75042344-75042363 Msa0043680:intron 45.0%
!!! TGTGCTCTGGTTTCAGGTTT+TGG - chr1_1:75042350-75042369 Msa0043680:intron 45.0%
!!! GTGCTCTGGTTTCAGGTTTT+GGG - chr1_1:75042351-75042370 Msa0043680:intron 45.0%
!!! TGGTTTCAGGTTTTGGGTGA+AGG - chr1_1:75042357-75042376 Msa0043680:intron 45.0%
AAGTTTCTCCTTCGCTGATG+TGG + chr1_1:75042424-75042443 None:intergenic 45.0%
AAGGAGAAACTTGAGTCTGC+TGG - chr1_1:75042432-75042451 Msa0043680:intron 45.0%
TGTTCCATCACTGTGATTCC+TGG - chr1_1:75042456-75042475 Msa0043680:CDS 45.0%
TGATTCCTGGCCGTAAGAAA+TGG - chr1_1:75042469-75042488 Msa0043680:CDS 45.0%
GATTCCTGGCCGTAAGAAAT+GGG - chr1_1:75042470-75042489 Msa0043680:CDS 45.0%
TTAACCCATTTCTTACGGCC+AGG + chr1_1:75042477-75042496 None:intergenic 45.0%
! CTTCTTGGCGAAGTATTCGT+CGG + chr1_1:75042529-75042548 None:intergenic 45.0%
!! GTTTGCTTGTCGATTTGTGC+TGG - chr1_1:75042809-75042828 Msa0043680:intron 45.0%
CGATTTGTGCTGGAAACCTT+TGG - chr1_1:75042819-75042838 Msa0043680:intron 45.0%
TTGTGCTGGAAACCTTTGGT+AGG - chr1_1:75042823-75042842 Msa0043680:intron 45.0%
AGGTGGATACCGAAAGTTCT+TGG - chr1_1:75042935-75042954 Msa0043680:five_prime_UTR 45.0%
!!! TTTTATAAAAATAAAAGAAA+AGG + chr1_1:75038893-75038912 None:intergenic 5.0%
!!! TTTTATAAAAAAACATAATA+AGG - chr1_1:75038903-75038922 Msa0043680:intron 5.0%
AGAGAGGGTAACCAGGAAAC+AGG + chr1_1:75037525-75037544 None:intergenic 50.0%
CTTGAATGGAGAAGCGAGAG+AGG + chr1_1:75037541-75037560 None:intergenic 50.0%
CTCTCTCGCTTCTCCATTCA+AGG - chr1_1:75037539-75037558 Msa0043680:three_prime_UTR 50.0%
GACAATTTGGGTCCACAACC+AGG - chr1_1:75037773-75037792 Msa0043680:three_prime_UTR 50.0%
! CAAGGAGCGAGTTGTGGTTT+TGG - chr1_1:75037842-75037861 Msa0043680:CDS 50.0%
TCTGGACCTGGTATCATGAG+AGG - chr1_1:75037887-75037906 Msa0043680:CDS 50.0%
CGACGATTGCCCAAACTTAG+AGG - chr1_1:75037938-75037957 Msa0043680:CDS 50.0%
GCATATCCGGCTCCTGTAAT+AGG + chr1_1:75038537-75038556 None:intergenic 50.0%
GTTTCCGTTCCCTTCCTGAT+GGG + chr1_1:75039046-75039065 None:intergenic 50.0%
AGTTTCCGTTCCCTTCCTGA+TGG + chr1_1:75039047-75039066 None:intergenic 50.0%
GAAGAGGGCTTAGGTTTGAG+AGG - chr1_1:75039677-75039696 Msa0043680:intron 50.0%
TTAGTATAGTCGGGGGTCCT+TGG - chr1_1:75039718-75039737 Msa0043680:intron 50.0%
TCAAGGCTCCATCAAGGAGT+TGG - chr1_1:75039850-75039869 Msa0043680:intron 50.0%
CAAGGCTCCATCAAGGAGTT+GGG - chr1_1:75039851-75039870 Msa0043680:intron 50.0%
GCACACATGGATGTCATGGA+TGG - chr1_1:75039915-75039934 Msa0043680:intron 50.0%
CATGGATGTCATGGATGGTG+AGG - chr1_1:75039920-75039939 Msa0043680:intron 50.0%
TGGGGAAGATGCATCTGTGT+TGG - chr1_1:75039956-75039975 Msa0043680:intron 50.0%
GTCATCTGTGTAGCCATGGA+AGG - chr1_1:75040039-75040058 Msa0043680:intron 50.0%
CAATGCTCCAAAACCCGACT+TGG - chr1_1:75040081-75040100 Msa0043680:intron 50.0%
! ACATCACCCAAGTCGGGTTT+TGG + chr1_1:75040091-75040110 None:intergenic 50.0%
GGTTACGAATCATGGATGGC+TGG + chr1_1:75040136-75040155 None:intergenic 50.0%
AGGGCTTGTGCATGAATGCA+AGG - chr1_1:75040186-75040205 Msa0043680:intron 50.0%
GGCAAGATTGAAGCTACCCT+TGG - chr1_1:75040285-75040304 Msa0043680:intron 50.0%
GATTGAAGCTACCCTTGGAC+GGG - chr1_1:75040290-75040309 Msa0043680:intron 50.0%
TCCAATAGTGACCCGTCCAA+GGG + chr1_1:75040304-75040323 None:intergenic 50.0%
! AAGTGGAAGTTGATCGGCCT+AGG - chr1_1:75040466-75040485 Msa0043680:intron 50.0%
! AGTGGAAGTTGATCGGCCTA+GGG - chr1_1:75040467-75040486 Msa0043680:intron 50.0%
ATTACCGAACAGGGGACAGT+AGG - chr1_1:75040508-75040527 Msa0043680:intron 50.0%
CAATCCTACTGTCCCCTGTT+CGG + chr1_1:75040515-75040534 None:intergenic 50.0%
CGAGATTCGTTGTTCGATGG+TGG + chr1_1:75040745-75040764 None:intergenic 50.0%
TCAAGCTCAATGCCACCCAA+AGG + chr1_1:75040835-75040854 None:intergenic 50.0%
TTCAAAGAGGCTGACCGCAT+AGG - chr1_1:75040934-75040953 Msa0043680:intron 50.0%
GCAGGCGTCAAAGAGTTCTT+TGG - chr1_1:75041074-75041093 Msa0043680:intron 50.0%
! GCTTGTAGTTTGTGGGAGCT+AGG - chr1_1:75041293-75041312 Msa0043680:intron 50.0%
GGCCAACTGAAGACTCATCA+GGG + chr1_1:75041400-75041419 None:intergenic 50.0%
TGCTCTTTGAGCCTCCTGTA+TGG - chr1_1:75041447-75041466 Msa0043680:CDS 50.0%
CCGAAACTGAACCATACAGG+AGG + chr1_1:75041461-75041480 None:intergenic 50.0%
TAGGAAGCCATCTTCCGGTA+AGG + chr1_1:75041491-75041510 None:intergenic 50.0%
!! TCTAGGGTTAGCCTTGACGA+CGG - chr1_1:75041593-75041612 Msa0043680:intron 50.0%
!! CTGGTCTTGTCGGTTCAGTT+AGG + chr1_1:75041700-75041719 None:intergenic 50.0%
TTCAGTCCTGAGTGTGTGAG+GGG - chr1_1:75041783-75041802 Msa0043680:intron 50.0%
CTACCAAGTGGGAAAAGGCA+TGG - chr1_1:75042076-75042095 Msa0043680:intron 50.0%
! TGCCTTTTCCACATCAGCGA+AGG - chr1_1:75042413-75042432 Msa0043680:intron 50.0%
CTCCTTCGCTGATGTGGAAA+AGG + chr1_1:75042418-75042437 None:intergenic 50.0%
! GTCGGCACGTGCAAGATTTT+TGG + chr1_1:75042511-75042530 None:intergenic 50.0%
! GGCACCGAACCAAGAACTTT+CGG + chr1_1:75042947-75042966 None:intergenic 50.0%
AGAAGCGAGAGAGGGTAACC+AGG + chr1_1:75037532-75037551 None:intergenic 55.0%
TCTGCTTCGGTGAAACCAGC+AGG - chr1_1:75037728-75037747 Msa0043680:three_prime_UTR 55.0%
!! AAGGGAAGAGGTATTGCCGC+AGG - chr1_1:75037818-75037837 Msa0043680:exon 55.0%
!! AGAGGTATTGCCGCAGGACA+AGG - chr1_1:75037824-75037843 Msa0043680:exon 55.0%
ACAACTCGCTCCTTGTCCTG+CGG + chr1_1:75037837-75037856 None:intergenic 55.0%
!! AGAAGGGGAAGAGGTGTCTC+TGG - chr1_1:75038992-75039011 Msa0043680:intron 55.0%
! GGTGTCTCTGGAGACACTGA+CGG - chr1_1:75039004-75039023 Msa0043680:intron 55.0%
TAGTCGGGGGTCCTTGGTAT+AGG - chr1_1:75039724-75039743 Msa0043680:intron 55.0%
AGTCGGGGGTCCTTGGTATA+GGG - chr1_1:75039725-75039744 Msa0043680:intron 55.0%
ACCCTTGGACGGGTCACTAT+TGG - chr1_1:75040300-75040319 Msa0043680:intron 55.0%
CTCCAATAGTGACCCGTCCA+AGG + chr1_1:75040305-75040324 None:intergenic 55.0%
CTTGGACGGGTCACTATTGG+AGG - chr1_1:75040303-75040322 Msa0043680:intron 55.0%
CAGGGGACAGTAGGATTGCA+AGG - chr1_1:75040517-75040536 Msa0043680:intron 55.0%
GGATTGCAAGGTCAACCACC+TGG - chr1_1:75040529-75040548 Msa0043680:intron 55.0%
AAGTTTGAGAGGCGGGATGC+AGG - chr1_1:75041056-75041075 Msa0043680:intron 55.0%
GGCCCTGATGAGTCTTCAGT+TGG - chr1_1:75041395-75041414 Msa0043680:CDS 55.0%
GGGCCAACTGAAGACTCATC+AGG + chr1_1:75041401-75041420 None:intergenic 55.0%
!! TTTAGGGTTGGCCGTCGTCA+AGG + chr1_1:75041607-75041626 None:intergenic 55.0%
GACGGCCAACCCTAAAAACC+TGG - chr1_1:75041611-75041630 Msa0043680:intron 55.0%
GCTGTTACCAGAGCAGGTTC+TGG + chr1_1:75041639-75041658 None:intergenic 55.0%
! CCACCATGCCTTTTCCCACT+TGG + chr1_1:75042082-75042101 None:intergenic 55.0%
! CCAAGTGGGAAAAGGCATGG+TGG - chr1_1:75042079-75042098 Msa0043680:intron 55.0%
! AGTGGGAAAAGGCATGGTGG+TGG - chr1_1:75042082-75042101 Msa0043680:intron 55.0%
ACGGCCAGGAATCACAGTGA+TGG + chr1_1:75042463-75042482 None:intergenic 55.0%
AGCAGCTGCTTCTCGCTTCT+TGG + chr1_1:75042544-75042563 None:intergenic 55.0%
GCAGGACAAGGAGCGAGTTG+TGG - chr1_1:75037836-75037855 Msa0043680:CDS 60.0%
AGTTGATCGGCCTAGGGCAG+AGG - chr1_1:75040473-75040492 Msa0043680:intron 60.0%
!! CCAGAGCAGGTTCTGGATCC+AGG + chr1_1:75041632-75041651 None:intergenic 60.0%
CCTGGATCCAGAACCTGCTC+TGG - chr1_1:75041629-75041648 Msa0043680:intron 60.0%
AGTCCTGAGTGTGTGAGGGG+AGG - chr1_1:75041786-75041805 Msa0043680:intron 60.0%
ACACCTCCCCTCACACACTC+AGG + chr1_1:75041792-75041811 None:intergenic 60.0%
CATGCTCGGCAACGGCAGTG+CGG - chr1_1:75041533-75041552 Msa0043680:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 75037404 75043008 75037404 ID=Msa0043680;Name=Msa0043680
chr1_1 mRNA 75037404 75043008 75037404 ID=Msa0043680-mRNA-1;Parent=Msa0043680;Name=Msa0043680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=94|1|1|1|1|1|4|424|257
chr1_1 exon 75037404 75038046 75037404 ID=Msa0043680-mRNA-1:exon:25318;Parent=Msa0043680-mRNA-1
chr1_1 exon 75041336 75041487 75041336 ID=Msa0043680-mRNA-1:exon:25317;Parent=Msa0043680-mRNA-1
chr1_1 exon 75042441 75042780 75042441 ID=Msa0043680-mRNA-1:exon:25316;Parent=Msa0043680-mRNA-1
chr1_1 exon 75042852 75043008 75042852 ID=Msa0043680-mRNA-1:exon:25315;Parent=Msa0043680-mRNA-1
chr1_1 five_prime_UTR 75042915 75043008 75042915 ID=Msa0043680-mRNA-1:five_prime_utr;Parent=Msa0043680-mRNA-1
chr1_1 CDS 75042852 75042914 75042852 ID=Msa0043680-mRNA-1:cds;Parent=Msa0043680-mRNA-1
chr1_1 CDS 75042441 75042780 75042441 ID=Msa0043680-mRNA-1:cds;Parent=Msa0043680-mRNA-1
chr1_1 CDS 75041336 75041487 75041336 ID=Msa0043680-mRNA-1:cds;Parent=Msa0043680-mRNA-1
chr1_1 CDS 75037828 75038046 75037828 ID=Msa0043680-mRNA-1:cds;Parent=Msa0043680-mRNA-1
chr1_1 three_prime_UTR 75037404 75037827 75037404 ID=Msa0043680-mRNA-1:three_prime_utr;Parent=Msa0043680-mRNA-1
Gene Sequence

>Msa0043680

ATGAGTGCTGCTGCTTCTCTTATTCCTGTTTCCTGGTTACCCTCTCTCGCTTCTCCATTCAAGGGAAATGTGAAAACCTTGGTAGCAAAACCATATCTATGTCCATGTCTTAAAATTCAGCGAATGAAACCTCGTGTTTTTGTTGTTAATAAGGCTGCTTCTGCTTCGGTGAAACCAGCAGGTGAAAATGTTCGGTTTCGGTTGGACAATTTGGGTCCACAACCAGGTTCAAGAAAGAGAGCAAAGAGAAAGGGAAGAGGTATTGCCGCAGGACAAGGAGCGAGTTGTGGTTTTGGAATGAGAGGTCAAAAATCTCGATCTGGACCTGGTATCATGAGAGGTTTTGAAGGTGGTCAGATGCCACTTTATCGACGATTGCCCAAACTTAGAGGAATTGCAGGAGGTATGCATGCTGGATTGCCGAAATATGTCCACATCAATCTGGTAGACATAGAAGATGCTGGATTTCAAGAAGGGGAAGAGGTGTCTCTGGAGACACTGACGGAGAAACGTGTGATTAACCCATCAGGAAGGGAACGGAAACTTCTATTGAAGGTTTTGGGTGAAGGAGAACTAAGCAAGAAGTTGACAATAAAAGCTGGTGCCTTTTCCACATCAGCGAAGGAGAAACTTGAGTCTGCTGGTTGTTCCATCACTGTGATTCCTGGCCGTAAGAAATGGGTTAAGCCATCAGTTGCCAAAAATCTTGCACGTGCCGACGAATACTTCGCCAAGAAGCGAGAAGCAGCTGCTTCTGAACCAGATTCTGTTTAA

Protein sequence

>Msa0043680

MSAAASLIPVSWLPSLASPFKGNVKTLVAKPYLCPCLKIQRMKPRVFVVNKAASASVKPAGENVRFRLDNLGPQPGSRKRAKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVHINLVDIEDAGFQEGEEVSLETLTEKRVINPSGRERKLLLKVLGEGELSKKLTIKAGAFSTSAKEKLESAGCSITVIPGRKKWVKPSVAKNLARADEYFAKKREAAASEPDSV*