AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0738880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0738880 MtrunA17_Chr5g0438511 96.000 50 2 0 1 50 1 50 8.39e-29 104
Msa0738880 MtrunA17_Chr5g0438501 100.000 26 0 0 148 173 135 160 9.49e-15 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 97 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGTTCAAATGTGATATT+TGG 0.175352 5_1:+56954334 None:intergenic
AACTACCTCTGATGCCAAAA+AGG 0.253882 5_1:-56954214 Msa0738880:CDS
GTTGTAACCTCCACCATATT+TGG 0.288132 5_1:+56954037 None:intergenic
GAAGTAAACGATGCCAAATA+TGG 0.342429 5_1:-56954050 Msa0738880:CDS
GAGGGAAGGAGGGAGATATA+AGG 0.384997 5_1:+56954401 None:intergenic
AAGGACCTTTACTTGGTAGT+TGG 0.402250 5_1:+56954420 None:intergenic
ACCTGCCATGGCAATGGTAT+TGG 0.432416 5_1:+56953739 None:intergenic
AGGACCTTTACTTGGTAGTT+GGG 0.437584 5_1:+56954421 None:intergenic
GAACCATAGCCAAGAGGCCT+AGG 0.443599 5_1:+56954277 None:intergenic
CATCCTAGGCCTCTTGGCTA+TGG 0.447886 5_1:-56954280 Msa0738880:CDS
GAAGTGTGCTCTATATATAA+TGG 0.448305 5_1:+56954379 None:intergenic
AATCCTCATCCTAGGCCTCT+TGG 0.458683 5_1:-56954286 Msa0738880:CDS
GCCAATACCATTGCCATGGC+AGG 0.481585 5_1:-56953740 Msa0738880:CDS
GAGATATAAGGACCTTTACT+TGG 0.487618 5_1:+56954413 None:intergenic
AGTGTTGTCCTTAGCTTGCA+TGG 0.498460 5_1:+56953692 None:intergenic
GGTGGTTACAACCATGGTGG+AGG 0.499176 5_1:-56953846 Msa0738880:CDS
GGTGGCTACAACCATGGTGG+AGG 0.500815 5_1:-56953810 Msa0738880:CDS
GGATACAACCACGGTGGTGG+TGG 0.504414 5_1:-56953948 Msa0738880:CDS
GGTGGATACAACCACGGTGG+TGG 0.511490 5_1:-56953951 Msa0738880:CDS
AGAAAAGCAATCCTCATCCT+AGG 0.516305 5_1:-56954294 Msa0738880:CDS
GGATACAACAATGGTGGAGG+TGG 0.518813 5_1:-56953885 Msa0738880:CDS
GGATACAACAATGGTGGAGG+TGG 0.518813 5_1:-56953927 Msa0738880:CDS
GGAGGTTACAACCACGGCGG+TGG 0.523190 5_1:-56954026 Msa0738880:CDS
GGCTACAACCATGGTGGAGG+CGG 0.523424 5_1:-56953807 Msa0738880:CDS
GGCGGTTACAACCACGGTGG+AGG 0.523588 5_1:-56953768 Msa0738880:CDS
GGCGGTTACAACCACGGTGG+AGG 0.523588 5_1:-56953789 Msa0738880:CDS
GGATACAACCACGGTGGTGG+TGG 0.524452 5_1:-56953906 Msa0738880:CDS
GGTTACAACCACGGTGGTGG+TGG 0.527779 5_1:-56953987 Msa0738880:CDS
TATATATAATGGAGGGAAGG+AGG 0.528749 5_1:+56954390 None:intergenic
TAGCCAAGAGGCCTAGGATG+AGG 0.538496 5_1:+56954283 None:intergenic
ATTTGTTGCCATGCAAGCTA+AGG 0.539995 5_1:-56953700 Msa0738880:CDS
AATGGTGGTGGCTACAACCA+TGG 0.544536 5_1:-56953816 Msa0738880:CDS
GGTTACAACCACGGCGGTGG+TGG 0.544864 5_1:-56954023 Msa0738880:CDS
GGAGGTGGTTACAATGGTGG+TGG 0.545650 5_1:-56953828 Msa0738880:CDS
GGTTACAACCATGGTGGAGG+TGG 0.547395 5_1:-56953843 Msa0738880:CDS
GGAGGTTACAACCACGGTGG+TGG 0.547932 5_1:-56953990 Msa0738880:CDS
GGATACAACCACGGTGGTGG+TGG 0.553440 5_1:-56953864 Msa0738880:CDS
TTCCTCAGAAGTCTCAGCTA+GGG 0.554700 5_1:-56954247 Msa0738880:CDS
CCTTTACTTGGTAGTTGGGA+AGG 0.556036 5_1:+56954425 None:intergenic
GGTGGATACAACCACGGTGG+TGG 0.558361 5_1:-56953867 Msa0738880:CDS
GGTGGATACAACCACGGTGG+TGG 0.558361 5_1:-56953909 Msa0738880:CDS
CATGTGAGCAGCACCTGCCA+TGG 0.559419 5_1:+56953727 None:intergenic
TTTCCTCAGAAGTCTCAGCT+AGG 0.560253 5_1:-56954248 Msa0738880:CDS
CACGGCGGTGGTGGTTACAA+TGG 0.571191 5_1:-56954014 Msa0738880:CDS
GGTTACAACCACGGTGGAGG+CGG 0.572554 5_1:-56953765 Msa0738880:CDS
AACGATGCCAAATATGGTGG+AGG 0.573315 5_1:-56954044 Msa0738880:CDS
GGTTACAACCACGGTGGAGG+CGG 0.574574 5_1:-56953786 Msa0738880:CDS
ATATATAATGGAGGGAAGGA+GGG 0.578217 5_1:+56954391 None:intergenic
CCTTCCCAACTACCAAGTAA+AGG 0.580733 5_1:-56954425 Msa0738880:five_prime_UTR
CTCTATATATAATGGAGGGA+AGG 0.583052 5_1:+56954387 None:intergenic
GGTGGATACAACAATGGCGG+TGG 0.583166 5_1:-56953969 Msa0738880:CDS
GGCGGTGGTGGTTACAATGG+TGG 0.594919 5_1:-56954011 Msa0738880:CDS
GGTTGTAACCGCCTCCACCA+TGG 0.597627 5_1:+56953799 None:intergenic
CATGGTGGAGGTGGTTACAA+TGG 0.597788 5_1:-56953834 Msa0738880:CDS
GGTGGATACAACAATGGTGG+AGG 0.598383 5_1:-56953888 Msa0738880:CDS
GGTGGATACAACAATGGTGG+AGG 0.598383 5_1:-56953930 Msa0738880:CDS
GGTGGTGGTTACAATGGTGG+AGG 0.609526 5_1:-56954008 Msa0738880:CDS
GGTGGAGGTGGTTACAATGG+TGG 0.613370 5_1:-56953831 Msa0738880:CDS
GTGTGCTCTATATATAATGG+AGG 0.615419 5_1:+56954382 None:intergenic
AGCAGCACCTGCCATGGCAA+TGG 0.620983 5_1:+56953733 None:intergenic
TTTGAACAGATATTGAACAA+TGG 0.621738 5_1:-56954322 Msa0738880:exon
GGTGGTGGTGGTTACAACCA+TGG 0.640243 5_1:-56953852 Msa0738880:CDS
GGTGGAGGCGGTTACAACCA+CGG 0.641005 5_1:-56953795 Msa0738880:CDS
GGTTGCCAATACCATTGCCA+TGG 0.642022 5_1:-56953744 Msa0738880:CDS
GTCCCTAGCTGAGACTTCTG+AGG 0.645915 5_1:+56954245 None:intergenic
CATTGTAACCACCACCGCCG+TGG 0.646466 5_1:+56954015 None:intergenic
GTAAACGATGCCAAATATGG+TGG 0.647144 5_1:-56954047 Msa0738880:CDS
CATTGTAACCACCTCCACCA+TGG 0.649002 5_1:+56953835 None:intergenic
TGTGCTCTATATATAATGGA+GGG 0.663392 5_1:+56954383 None:intergenic
TAAGAAGAACCATAGCCAAG+AGG 0.664133 5_1:+56954271 None:intergenic
GGTGGTGGTGGATACAACAA+TGG 0.666044 5_1:-56953975 Msa0738880:CDS
GGTGGAGGCGGTTACAACCA+CGG 0.674017 5_1:-56953774 Msa0738880:CDS
GGTGGTGGATACAACAATGG+TGG 0.676280 5_1:-56953891 Msa0738880:CDS
GGTGGTGGATACAACAATGG+TGG 0.676280 5_1:-56953933 Msa0738880:CDS
ATTGGCAACCGCCTCCACCG+TGG 0.678280 5_1:+56953757 None:intergenic
GGTTGTAACCGCCTCCACCG+TGG 0.681332 5_1:+56953778 None:intergenic
GGTGGTGGTGGATACAACAA+TGG 0.684345 5_1:-56953894 Msa0738880:CDS
GGTGGTGGTGGATACAACAA+TGG 0.684345 5_1:-56953936 Msa0738880:CDS
TATGGTGGAGGTTACAACCA+CGG 0.702708 5_1:-56954032 Msa0738880:CDS
AATGGTGGAGGTTACAACCA+CGG 0.710899 5_1:-56953996 Msa0738880:CDS
TGTTGTATCCACCACCACCG+TGG 0.714982 5_1:+56953898 None:intergenic
TGTTGTATCCACCACCACCG+TGG 0.714982 5_1:+56953940 None:intergenic
TGTTGTATCCACCACCACCG+TGG 0.714982 5_1:+56953979 None:intergenic
GGTGGTGGCTACAACCATGG+TGG 0.723784 5_1:-56953813 Msa0738880:CDS
GGTGGAGGTGGATACAACCA+CGG 0.728168 5_1:-56953873 Msa0738880:CDS
GGTGGAGGTGGATACAACCA+CGG 0.728168 5_1:-56953915 Msa0738880:CDS
GGTGGTGGTTACAACCATGG+TGG 0.730633 5_1:-56953849 Msa0738880:CDS
AATGGCGGTGGATACAACCA+CGG 0.732761 5_1:-56953957 Msa0738880:CDS
GGTGGTGGATACAACAATGG+CGG 0.734675 5_1:-56953972 Msa0738880:CDS
GGTTGTAACCACCACCACCG+TGG 0.740537 5_1:+56953856 None:intergenic
GGCGGTGGATACAACCACGG+TGG 0.764343 5_1:-56953954 Msa0738880:CDS
GGAGGCGGTTACAACCACGG+TGG 0.788813 5_1:-56953792 Msa0738880:CDS
GGAGGCGGTTACAACCACGG+TGG 0.797498 5_1:-56953771 Msa0738880:CDS
GGTGGAGGTTACAACCACGG+TGG 0.812517 5_1:-56953993 Msa0738880:CDS
GGAGGTGGATACAACCACGG+TGG 0.823069 5_1:-56953870 Msa0738880:CDS
GGAGGTGGATACAACCACGG+TGG 0.823069 5_1:-56953912 Msa0738880:CDS
GGTGGAGGTTACAACCACGG+CGG 0.825418 5_1:-56954029 Msa0738880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTTTGAAGTATTGTT+TGG + chr5_1:56953806-56953825 None:intergenic 15.0%
!!! ATAAATTTTGAAGTATTGTT+TGG + chr5_1:56953806-56953825 None:intergenic 15.0%
! ATCTGTTCAAATGTGATATT+TGG + chr5_1:56953950-56953969 None:intergenic 25.0%
! TTTGAACAGATATTGAACAA+TGG - chr5_1:56953959-56953978 Msa0738880:CDS 25.0%
! ATCTGTTCAAATGTGATATT+TGG + chr5_1:56953950-56953969 None:intergenic 25.0%
! TTTGAACAGATATTGAACAA+TGG - chr5_1:56953959-56953978 Msa0738880:CDS 25.0%
! CAACAAAAATGCATGGTTTT+AGG + chr5_1:56953749-56953768 None:intergenic 30.0%
CAATGTACAACAAAAATGCA+TGG + chr5_1:56953756-56953775 None:intergenic 30.0%
! TGTGCTCTATATATAATGGA+GGG + chr5_1:56953901-56953920 None:intergenic 30.0%
GAAGTGTGCTCTATATATAA+TGG + chr5_1:56953905-56953924 None:intergenic 30.0%
! AATATATAGCTCACCCTTTT+TGG + chr5_1:56954084-56954103 None:intergenic 30.0%
! CAACAAAAATGCATGGTTTT+AGG + chr5_1:56953749-56953768 None:intergenic 30.0%
CAATGTACAACAAAAATGCA+TGG + chr5_1:56953756-56953775 None:intergenic 30.0%
! TGTGCTCTATATATAATGGA+GGG + chr5_1:56953901-56953920 None:intergenic 30.0%
GAAGTGTGCTCTATATATAA+TGG + chr5_1:56953905-56953924 None:intergenic 30.0%
! AATATATAGCTCACCCTTTT+TGG + chr5_1:56954084-56954103 None:intergenic 30.0%
GAGATATAAGGACCTTTACT+TGG + chr5_1:56953871-56953890 None:intergenic 35.0%
! ATATATAATGGAGGGAAGGA+GGG + chr5_1:56953893-56953912 None:intergenic 35.0%
! TATATATAATGGAGGGAAGG+AGG + chr5_1:56953894-56953913 None:intergenic 35.0%
! CTCTATATATAATGGAGGGA+AGG + chr5_1:56953897-56953916 None:intergenic 35.0%
GTGTGCTCTATATATAATGG+AGG + chr5_1:56953902-56953921 None:intergenic 35.0%
GAAGTAAACGATGCCAAATA+TGG - chr5_1:56954231-56954250 Msa0738880:CDS 35.0%
GAGATATAAGGACCTTTACT+TGG + chr5_1:56953871-56953890 None:intergenic 35.0%
! ATATATAATGGAGGGAAGGA+GGG + chr5_1:56953893-56953912 None:intergenic 35.0%
! TATATATAATGGAGGGAAGG+AGG + chr5_1:56953894-56953913 None:intergenic 35.0%
! CTCTATATATAATGGAGGGA+AGG + chr5_1:56953897-56953916 None:intergenic 35.0%
GTGTGCTCTATATATAATGG+AGG + chr5_1:56953902-56953921 None:intergenic 35.0%
GAAGTAAACGATGCCAAATA+TGG - chr5_1:56954231-56954250 Msa0738880:CDS 35.0%
! AGGACCTTTACTTGGTAGTT+GGG + chr5_1:56953863-56953882 None:intergenic 40.0%
! AAGGACCTTTACTTGGTAGT+TGG + chr5_1:56953864-56953883 None:intergenic 40.0%
AGAAAAGCAATCCTCATCCT+AGG - chr5_1:56953987-56954006 Msa0738880:CDS 40.0%
TAAGAAGAACCATAGCCAAG+AGG + chr5_1:56954013-56954032 None:intergenic 40.0%
AACTACCTCTGATGCCAAAA+AGG - chr5_1:56954067-56954086 Msa0738880:CDS 40.0%
ACTACCTCTGATGCCAAAAA+GGG - chr5_1:56954068-56954087 Msa0738880:CDS 40.0%
GTAAACGATGCCAAATATGG+TGG - chr5_1:56954234-56954253 Msa0738880:CDS 40.0%
GTTGTAACCTCCACCATATT+TGG + chr5_1:56954247-56954266 None:intergenic 40.0%
! ATTTGTTGCCATGCAAGCTA+AGG - chr5_1:56954581-56954600 Msa0738880:five_prime_UTR 40.0%
! AGGACCTTTACTTGGTAGTT+GGG + chr5_1:56953863-56953882 None:intergenic 40.0%
! AAGGACCTTTACTTGGTAGT+TGG + chr5_1:56953864-56953883 None:intergenic 40.0%
AGAAAAGCAATCCTCATCCT+AGG - chr5_1:56953987-56954006 Msa0738880:CDS 40.0%
TAAGAAGAACCATAGCCAAG+AGG + chr5_1:56954013-56954032 None:intergenic 40.0%
AACTACCTCTGATGCCAAAA+AGG - chr5_1:56954067-56954086 Msa0738880:CDS 40.0%
ACTACCTCTGATGCCAAAAA+GGG - chr5_1:56954068-56954087 Msa0738880:CDS 40.0%
GTAAACGATGCCAAATATGG+TGG - chr5_1:56954234-56954253 Msa0738880:CDS 40.0%
GTTGTAACCTCCACCATATT+TGG + chr5_1:56954247-56954266 None:intergenic 40.0%
! ATTTGTTGCCATGCAAGCTA+AGG - chr5_1:56954581-56954600 Msa0738880:five_prime_UTR 40.0%
! CCTTTACTTGGTAGTTGGGA+AGG + chr5_1:56953859-56953878 None:intergenic 45.0%
CCTTCCCAACTACCAAGTAA+AGG - chr5_1:56953856-56953875 Msa0738880:CDS 45.0%
TTTCCTCAGAAGTCTCAGCT+AGG - chr5_1:56954033-56954052 Msa0738880:CDS 45.0%
TTCCTCAGAAGTCTCAGCTA+GGG - chr5_1:56954034-56954053 Msa0738880:CDS 45.0%
AACGATGCCAAATATGGTGG+AGG - chr5_1:56954237-56954256 Msa0738880:CDS 45.0%
! TATGGTGGAGGTTACAACCA+CGG - chr5_1:56954249-56954268 Msa0738880:CDS 45.0%
! AATGGTGGAGGTTACAACCA+CGG - chr5_1:56954285-56954304 Msa0738880:CDS 45.0%
!! AGTGTTGTCCTTAGCTTGCA+TGG + chr5_1:56954592-56954611 None:intergenic 45.0%
! CCTTTACTTGGTAGTTGGGA+AGG + chr5_1:56953859-56953878 None:intergenic 45.0%
CCTTCCCAACTACCAAGTAA+AGG - chr5_1:56953856-56953875 Msa0738880:CDS 45.0%
TTTCCTCAGAAGTCTCAGCT+AGG - chr5_1:56954033-56954052 Msa0738880:CDS 45.0%
TTCCTCAGAAGTCTCAGCTA+GGG - chr5_1:56954034-56954053 Msa0738880:CDS 45.0%
AACGATGCCAAATATGGTGG+AGG - chr5_1:56954237-56954256 Msa0738880:CDS 45.0%
! TATGGTGGAGGTTACAACCA+CGG - chr5_1:56954249-56954268 Msa0738880:CDS 45.0%
! AATGGTGGAGGTTACAACCA+CGG - chr5_1:56954285-56954304 Msa0738880:CDS 45.0%
!! AGTGTTGTCCTTAGCTTGCA+TGG + chr5_1:56954592-56954611 None:intergenic 45.0%
GAGGGAAGGAGGGAGATATA+AGG + chr5_1:56953883-56953902 None:intergenic 50.0%
AATCCTCATCCTAGGCCTCT+TGG - chr5_1:56953995-56954014 Msa0738880:CDS 50.0%
!! CTCACCCTTTTTGGCATCAG+AGG + chr5_1:56954075-56954094 None:intergenic 50.0%
!! GGTGGTGGTGGATACAACAA+TGG - chr5_1:56954306-56954325 Msa0738880:CDS 50.0%
!! GGTGGTGGATACAACAATGG+CGG - chr5_1:56954309-56954328 Msa0738880:exon 50.0%
AATGGCGGTGGATACAACCA+CGG - chr5_1:56954324-56954343 Msa0738880:exon 50.0%
!! GGTGGTGGTGGATACAACAA+TGG - chr5_1:56954306-56954325 Msa0738880:CDS 50.0%
!! GGTGGTGGATACAACAATGG+TGG - chr5_1:56954309-56954328 Msa0738880:exon 50.0%
GGTGGATACAACAATGGTGG+AGG - chr5_1:56954351-56954370 Msa0738880:five_prime_UTR 50.0%
! GGATACAACAATGGTGGAGG+TGG - chr5_1:56954354-56954373 Msa0738880:five_prime_UTR 50.0%
!! GGTGGTGGTGGATACAACAA+TGG - chr5_1:56954306-56954325 Msa0738880:CDS 50.0%
!! GGTGGTGGATACAACAATGG+TGG - chr5_1:56954309-56954328 Msa0738880:exon 50.0%
GGTGGATACAACAATGGTGG+AGG - chr5_1:56954351-56954370 Msa0738880:five_prime_UTR 50.0%
! GGATACAACAATGGTGGAGG+TGG - chr5_1:56954354-56954373 Msa0738880:five_prime_UTR 50.0%
CATTGTAACCACCTCCACCA+TGG + chr5_1:56954449-56954468 None:intergenic 50.0%
! CATGGTGGAGGTGGTTACAA+TGG - chr5_1:56954447-56954466 Msa0738880:five_prime_UTR 50.0%
!! AATGGTGGTGGCTACAACCA+TGG - chr5_1:56954465-56954484 Msa0738880:five_prime_UTR 50.0%
GGTTGCCAATACCATTGCCA+TGG - chr5_1:56954537-56954556 Msa0738880:five_prime_UTR 50.0%
ACCTGCCATGGCAATGGTAT+TGG + chr5_1:56954545-56954564 None:intergenic 50.0%
GAGGGAAGGAGGGAGATATA+AGG + chr5_1:56953883-56953902 None:intergenic 50.0%
AATCCTCATCCTAGGCCTCT+TGG - chr5_1:56953995-56954014 Msa0738880:CDS 50.0%
!! CTCACCCTTTTTGGCATCAG+AGG + chr5_1:56954075-56954094 None:intergenic 50.0%
!! GGTGGTGGTGGATACAACAA+TGG - chr5_1:56954306-56954325 Msa0738880:CDS 50.0%
!! GGTGGTGGATACAACAATGG+CGG - chr5_1:56954309-56954328 Msa0738880:exon 50.0%
AATGGCGGTGGATACAACCA+CGG - chr5_1:56954324-56954343 Msa0738880:exon 50.0%
!! GGTGGTGGTGGATACAACAA+TGG - chr5_1:56954306-56954325 Msa0738880:CDS 50.0%
!! GGTGGTGGATACAACAATGG+TGG - chr5_1:56954309-56954328 Msa0738880:exon 50.0%
GGTGGATACAACAATGGTGG+AGG - chr5_1:56954351-56954370 Msa0738880:five_prime_UTR 50.0%
! GGATACAACAATGGTGGAGG+TGG - chr5_1:56954354-56954373 Msa0738880:five_prime_UTR 50.0%
!! GGTGGTGGTGGATACAACAA+TGG - chr5_1:56954306-56954325 Msa0738880:CDS 50.0%
!! GGTGGTGGATACAACAATGG+TGG - chr5_1:56954309-56954328 Msa0738880:exon 50.0%
GGTGGATACAACAATGGTGG+AGG - chr5_1:56954351-56954370 Msa0738880:five_prime_UTR 50.0%
! GGATACAACAATGGTGGAGG+TGG - chr5_1:56954354-56954373 Msa0738880:five_prime_UTR 50.0%
CATTGTAACCACCTCCACCA+TGG + chr5_1:56954449-56954468 None:intergenic 50.0%
! CATGGTGGAGGTGGTTACAA+TGG - chr5_1:56954447-56954466 Msa0738880:five_prime_UTR 50.0%
!! AATGGTGGTGGCTACAACCA+TGG - chr5_1:56954465-56954484 Msa0738880:five_prime_UTR 50.0%
GGTTGCCAATACCATTGCCA+TGG - chr5_1:56954537-56954556 Msa0738880:five_prime_UTR 50.0%
ACCTGCCATGGCAATGGTAT+TGG + chr5_1:56954545-56954564 None:intergenic 50.0%
TAGCCAAGAGGCCTAGGATG+AGG + chr5_1:56954001-56954020 None:intergenic 55.0%
CATCCTAGGCCTCTTGGCTA+TGG - chr5_1:56954001-56954020 Msa0738880:CDS 55.0%
GAACCATAGCCAAGAGGCCT+AGG + chr5_1:56954007-56954026 None:intergenic 55.0%
GTCCCTAGCTGAGACTTCTG+AGG + chr5_1:56954039-56954058 None:intergenic 55.0%
! GGTGGTGGTTACAATGGTGG+AGG - chr5_1:56954273-56954292 Msa0738880:CDS 55.0%
TGTTGTATCCACCACCACCG+TGG + chr5_1:56954305-56954324 None:intergenic 55.0%
GGTGGATACAACAATGGCGG+TGG - chr5_1:56954312-56954331 Msa0738880:exon 55.0%
TGTTGTATCCACCACCACCG+TGG + chr5_1:56954305-56954324 None:intergenic 55.0%
GGTGGAGGTGGATACAACCA+CGG - chr5_1:56954366-56954385 Msa0738880:five_prime_UTR 55.0%
TGTTGTATCCACCACCACCG+TGG + chr5_1:56954305-56954324 None:intergenic 55.0%
GGTGGAGGTGGATACAACCA+CGG - chr5_1:56954366-56954385 Msa0738880:five_prime_UTR 55.0%
!! GGTGGTGGTGGTTACAACCA+TGG - chr5_1:56954429-56954448 Msa0738880:five_prime_UTR 55.0%
! GGTGGTGGTTACAACCATGG+TGG - chr5_1:56954432-56954451 Msa0738880:five_prime_UTR 55.0%
GGTGGTTACAACCATGGTGG+AGG - chr5_1:56954435-56954454 Msa0738880:five_prime_UTR 55.0%
! GGTTACAACCATGGTGGAGG+TGG - chr5_1:56954438-56954457 Msa0738880:five_prime_UTR 55.0%
GGTGGAGGTGGTTACAATGG+TGG - chr5_1:56954450-56954469 Msa0738880:five_prime_UTR 55.0%
GGAGGTGGTTACAATGGTGG+TGG - chr5_1:56954453-56954472 Msa0738880:five_prime_UTR 55.0%
GCCAATACCATTGCCATGGC+AGG - chr5_1:56954541-56954560 Msa0738880:five_prime_UTR 55.0%
TAGCCAAGAGGCCTAGGATG+AGG + chr5_1:56954001-56954020 None:intergenic 55.0%
CATCCTAGGCCTCTTGGCTA+TGG - chr5_1:56954001-56954020 Msa0738880:CDS 55.0%
GAACCATAGCCAAGAGGCCT+AGG + chr5_1:56954007-56954026 None:intergenic 55.0%
GTCCCTAGCTGAGACTTCTG+AGG + chr5_1:56954039-56954058 None:intergenic 55.0%
! GGTGGTGGTTACAATGGTGG+AGG - chr5_1:56954273-56954292 Msa0738880:CDS 55.0%
TGTTGTATCCACCACCACCG+TGG + chr5_1:56954305-56954324 None:intergenic 55.0%
GGTGGATACAACAATGGCGG+TGG - chr5_1:56954312-56954331 Msa0738880:exon 55.0%
TGTTGTATCCACCACCACCG+TGG + chr5_1:56954305-56954324 None:intergenic 55.0%
GGTGGAGGTGGATACAACCA+CGG - chr5_1:56954366-56954385 Msa0738880:five_prime_UTR 55.0%
TGTTGTATCCACCACCACCG+TGG + chr5_1:56954305-56954324 None:intergenic 55.0%
GGTGGAGGTGGATACAACCA+CGG - chr5_1:56954366-56954385 Msa0738880:five_prime_UTR 55.0%
!! GGTGGTGGTGGTTACAACCA+TGG - chr5_1:56954429-56954448 Msa0738880:five_prime_UTR 55.0%
! GGTGGTGGTTACAACCATGG+TGG - chr5_1:56954432-56954451 Msa0738880:five_prime_UTR 55.0%
GGTGGTTACAACCATGGTGG+AGG - chr5_1:56954435-56954454 Msa0738880:five_prime_UTR 55.0%
! GGTTACAACCATGGTGGAGG+TGG - chr5_1:56954438-56954457 Msa0738880:five_prime_UTR 55.0%
GGTGGAGGTGGTTACAATGG+TGG - chr5_1:56954450-56954469 Msa0738880:five_prime_UTR 55.0%
GGAGGTGGTTACAATGGTGG+TGG - chr5_1:56954453-56954472 Msa0738880:five_prime_UTR 55.0%
GCCAATACCATTGCCATGGC+AGG - chr5_1:56954541-56954560 Msa0738880:five_prime_UTR 55.0%
GGTGGAGGTTACAACCACGG+CGG - chr5_1:56954252-56954271 Msa0738880:CDS 60.0%
CATTGTAACCACCACCGCCG+TGG + chr5_1:56954269-56954288 None:intergenic 60.0%
! CACGGCGGTGGTGGTTACAA+TGG - chr5_1:56954267-56954286 Msa0738880:CDS 60.0%
! GGCGGTGGTGGTTACAATGG+TGG - chr5_1:56954270-56954289 Msa0738880:CDS 60.0%
GGTGGAGGTTACAACCACGG+TGG - chr5_1:56954252-56954271 Msa0738880:CDS 60.0%
GGAGGTTACAACCACGGTGG+TGG - chr5_1:56954291-56954310 Msa0738880:CDS 60.0%
! GGTTACAACCACGGTGGTGG+TGG - chr5_1:56954294-56954313 Msa0738880:CDS 60.0%
GGTGGATACAACCACGGTGG+TGG - chr5_1:56954330-56954349 Msa0738880:five_prime_UTR 60.0%
! GGATACAACCACGGTGGTGG+TGG - chr5_1:56954333-56954352 Msa0738880:five_prime_UTR 60.0%
GGAGGTGGATACAACCACGG+TGG - chr5_1:56954369-56954388 Msa0738880:five_prime_UTR 60.0%
GGTGGATACAACCACGGTGG+TGG - chr5_1:56954330-56954349 Msa0738880:five_prime_UTR 60.0%
! GGATACAACCACGGTGGTGG+TGG - chr5_1:56954333-56954352 Msa0738880:five_prime_UTR 60.0%
GGAGGTGGATACAACCACGG+TGG - chr5_1:56954369-56954388 Msa0738880:five_prime_UTR 60.0%
GGTGGATACAACCACGGTGG+TGG - chr5_1:56954330-56954349 Msa0738880:five_prime_UTR 60.0%
! GGATACAACCACGGTGGTGG+TGG - chr5_1:56954333-56954352 Msa0738880:five_prime_UTR 60.0%
GGTTGTAACCACCACCACCG+TGG + chr5_1:56954428-56954447 None:intergenic 60.0%
! GGTGGTGGCTACAACCATGG+TGG - chr5_1:56954468-56954487 Msa0738880:five_prime_UTR 60.0%
GGTGGCTACAACCATGGTGG+AGG - chr5_1:56954471-56954490 Msa0738880:five_prime_UTR 60.0%
! GGCTACAACCATGGTGGAGG+CGG - chr5_1:56954474-56954493 Msa0738880:five_prime_UTR 60.0%
GGTTGTAACCGCCTCCACCA+TGG + chr5_1:56954485-56954504 None:intergenic 60.0%
GGTGGAGGCGGTTACAACCA+CGG - chr5_1:56954486-56954505 Msa0738880:five_prime_UTR 60.0%
GGTTACAACCACGGTGGAGG+CGG - chr5_1:56954495-56954514 Msa0738880:five_prime_UTR 60.0%
GGTGGAGGCGGTTACAACCA+CGG - chr5_1:56954486-56954505 Msa0738880:five_prime_UTR 60.0%
GGTTACAACCACGGTGGAGG+CGG - chr5_1:56954495-56954514 Msa0738880:five_prime_UTR 60.0%
AGCAGCACCTGCCATGGCAA+TGG + chr5_1:56954551-56954570 None:intergenic 60.0%
CATGTGAGCAGCACCTGCCA+TGG + chr5_1:56954557-56954576 None:intergenic 60.0%
GGTGGAGGTTACAACCACGG+CGG - chr5_1:56954252-56954271 Msa0738880:CDS 60.0%
CATTGTAACCACCACCGCCG+TGG + chr5_1:56954269-56954288 None:intergenic 60.0%
! CACGGCGGTGGTGGTTACAA+TGG - chr5_1:56954267-56954286 Msa0738880:CDS 60.0%
! GGCGGTGGTGGTTACAATGG+TGG - chr5_1:56954270-56954289 Msa0738880:CDS 60.0%
GGTGGAGGTTACAACCACGG+TGG - chr5_1:56954252-56954271 Msa0738880:CDS 60.0%
GGAGGTTACAACCACGGTGG+TGG - chr5_1:56954291-56954310 Msa0738880:CDS 60.0%
! GGTTACAACCACGGTGGTGG+TGG - chr5_1:56954294-56954313 Msa0738880:CDS 60.0%
GGTGGATACAACCACGGTGG+TGG - chr5_1:56954330-56954349 Msa0738880:five_prime_UTR 60.0%
! GGATACAACCACGGTGGTGG+TGG - chr5_1:56954333-56954352 Msa0738880:five_prime_UTR 60.0%
GGAGGTGGATACAACCACGG+TGG - chr5_1:56954369-56954388 Msa0738880:five_prime_UTR 60.0%
GGTGGATACAACCACGGTGG+TGG - chr5_1:56954330-56954349 Msa0738880:five_prime_UTR 60.0%
! GGATACAACCACGGTGGTGG+TGG - chr5_1:56954333-56954352 Msa0738880:five_prime_UTR 60.0%
GGAGGTGGATACAACCACGG+TGG - chr5_1:56954369-56954388 Msa0738880:five_prime_UTR 60.0%
GGTGGATACAACCACGGTGG+TGG - chr5_1:56954330-56954349 Msa0738880:five_prime_UTR 60.0%
! GGATACAACCACGGTGGTGG+TGG - chr5_1:56954333-56954352 Msa0738880:five_prime_UTR 60.0%
GGTTGTAACCACCACCACCG+TGG + chr5_1:56954428-56954447 None:intergenic 60.0%
! GGTGGTGGCTACAACCATGG+TGG - chr5_1:56954468-56954487 Msa0738880:five_prime_UTR 60.0%
GGTGGCTACAACCATGGTGG+AGG - chr5_1:56954471-56954490 Msa0738880:five_prime_UTR 60.0%
! GGCTACAACCATGGTGGAGG+CGG - chr5_1:56954474-56954493 Msa0738880:five_prime_UTR 60.0%
GGTTGTAACCGCCTCCACCA+TGG + chr5_1:56954485-56954504 None:intergenic 60.0%
GGTGGAGGCGGTTACAACCA+CGG - chr5_1:56954486-56954505 Msa0738880:five_prime_UTR 60.0%
GGTTACAACCACGGTGGAGG+CGG - chr5_1:56954495-56954514 Msa0738880:five_prime_UTR 60.0%
GGTGGAGGCGGTTACAACCA+CGG - chr5_1:56954486-56954505 Msa0738880:five_prime_UTR 60.0%
GGTTACAACCACGGTGGAGG+CGG - chr5_1:56954495-56954514 Msa0738880:five_prime_UTR 60.0%
AGCAGCACCTGCCATGGCAA+TGG + chr5_1:56954551-56954570 None:intergenic 60.0%
CATGTGAGCAGCACCTGCCA+TGG + chr5_1:56954557-56954576 None:intergenic 60.0%
GGAGGTTACAACCACGGCGG+TGG - chr5_1:56954255-56954274 Msa0738880:CDS 65.0%
GGTTACAACCACGGCGGTGG+TGG - chr5_1:56954258-56954277 Msa0738880:CDS 65.0%
GGCGGTGGATACAACCACGG+TGG - chr5_1:56954327-56954346 Msa0738880:five_prime_UTR 65.0%
GGAGGCGGTTACAACCACGG+TGG - chr5_1:56954489-56954508 Msa0738880:five_prime_UTR 65.0%
GGCGGTTACAACCACGGTGG+AGG - chr5_1:56954492-56954511 Msa0738880:five_prime_UTR 65.0%
GGTTGTAACCGCCTCCACCG+TGG + chr5_1:56954506-56954525 None:intergenic 65.0%
GGAGGCGGTTACAACCACGG+TGG - chr5_1:56954489-56954508 Msa0738880:five_prime_UTR 65.0%
GGCGGTTACAACCACGGTGG+AGG - chr5_1:56954492-56954511 Msa0738880:five_prime_UTR 65.0%
ATTGGCAACCGCCTCCACCG+TGG + chr5_1:56954527-56954546 None:intergenic 65.0%
GGAGGTTACAACCACGGCGG+TGG - chr5_1:56954255-56954274 Msa0738880:CDS 65.0%
GGTTACAACCACGGCGGTGG+TGG - chr5_1:56954258-56954277 Msa0738880:CDS 65.0%
GGCGGTGGATACAACCACGG+TGG - chr5_1:56954327-56954346 Msa0738880:five_prime_UTR 65.0%
GGAGGCGGTTACAACCACGG+TGG - chr5_1:56954489-56954508 Msa0738880:five_prime_UTR 65.0%
GGCGGTTACAACCACGGTGG+AGG - chr5_1:56954492-56954511 Msa0738880:five_prime_UTR 65.0%
GGTTGTAACCGCCTCCACCG+TGG + chr5_1:56954506-56954525 None:intergenic 65.0%
GGAGGCGGTTACAACCACGG+TGG - chr5_1:56954489-56954508 Msa0738880:five_prime_UTR 65.0%
GGCGGTTACAACCACGGTGG+AGG - chr5_1:56954492-56954511 Msa0738880:five_prime_UTR 65.0%
ATTGGCAACCGCCTCCACCG+TGG + chr5_1:56954527-56954546 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 56953683 56954620 56953683 ID=Msa0738880;Name=Msa0738880
chr5_1 mRNA 56953683 56954620 56953683 ID=Msa0738880-mRNA-1;Parent=Msa0738880;Name=Msa0738880-mRNA-1;_AED=0.15;_eAED=0.21;_QI=295|1|0.5|1|1|1|2|0|173
chr5_1 exon 56953683 56954092 56953683 ID=Msa0738880-mRNA-1:exon:16113;Parent=Msa0738880-mRNA-1
chr5_1 exon 56954214 56954620 56954214 ID=Msa0738880-mRNA-1:exon:16112;Parent=Msa0738880-mRNA-1
chr5_1 five_prime_UTR 56954326 56954620 56954326 ID=Msa0738880-mRNA-1:five_prime_utr;Parent=Msa0738880-mRNA-1
chr5_1 CDS 56954214 56954325 56954214 ID=Msa0738880-mRNA-1:cds;Parent=Msa0738880-mRNA-1
chr5_1 CDS 56953683 56954092 56953683 ID=Msa0738880-mRNA-1:cds;Parent=Msa0738880-mRNA-1
Gene Sequence

>Msa0738880

ATGGATTCGAGAAAAGCAATCCTCATCCTAGGCCTCTTGGCTATGGTTCTTCTTATTTCCTCAGAAGTCTCAGCTAGGGACTTAACTGAAACTACCTCTGATGCCAAAAAGGAAGTTGTTGAAAAGACTAATGAAGTAAACGATGCCAAATATGGTGGAGGTTACAACCACGGCGGTGGTGGTTACAATGGTGGAGGTTACAACCACGGTGGTGGTGGATACAACAATGGCGGTGGATACAACCACGGTGGTGGTGGATACAACAATGGTGGAGGTGGATACAACCACGGTGGTGGTGGATACAACAATGGTGGAGGTGGATACAACCACGGTGGTGGTGGTTACAACCATGGTGGAGGTGGTTACAATGGTGGTGGCTACAACCATGGTGGAGGCGGTTACAACCACGGTGGAGGCGGTTACAACCACGGTGGAGGCGGTTGCCAATACCATTGCCATGGCAGGTGCTGCTCACATGCTGAATTTGTTGCCATGCAAGCTAAGGACAACACTCAGAATTGA

Protein sequence

>Msa0738880

MDSRKAILILGLLAMVLLISSEVSARDLTETTSDAKKEVVEKTNEVNDAKYGGGYNHGGGGYNGGGYNHGGGGYNNGGGYNHGGGGYNNGGGGYNHGGGGYNNGGGGYNHGGGGYNHGGGGYNGGGYNHGGGGYNHGGGGYNHGGGGCQYHCHGRCCSHAEFVAMQAKDNTQN*