AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0819370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0819370 MtrunA17_Chr5g0438511 96.000 50 2 0 1 50 1 50 8.39e-29 104
Msa0819370 MtrunA17_Chr5g0438501 100.000 26 0 0 148 173 135 160 9.49e-15 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 97 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGTTCAAATGTGATATT+TGG 0.175352 5_3:+55836854 None:intergenic
AACTACCTCTGATGCCAAAA+AGG 0.253882 5_3:-55836734 Msa0819370:CDS
GTTGTAACCTCCACCATATT+TGG 0.288132 5_3:+55836557 None:intergenic
GAAGTAAACGATGCCAAATA+TGG 0.342429 5_3:-55836570 Msa0819370:CDS
GAGGGAAGGAGGGAGATATA+AGG 0.384997 5_3:+55836921 None:intergenic
AAGGACCTTTACTTGGTAGT+TGG 0.402250 5_3:+55836940 None:intergenic
ACCTGCCATGGCAATGGTAT+TGG 0.432416 5_3:+55836259 None:intergenic
AGGACCTTTACTTGGTAGTT+GGG 0.437584 5_3:+55836941 None:intergenic
GAACCATAGCCAAGAGGCCT+AGG 0.443599 5_3:+55836797 None:intergenic
CATCCTAGGCCTCTTGGCTA+TGG 0.447886 5_3:-55836800 Msa0819370:CDS
GAAGTGTGCTCTATATATAA+TGG 0.448305 5_3:+55836899 None:intergenic
AATCCTCATCCTAGGCCTCT+TGG 0.458683 5_3:-55836806 Msa0819370:CDS
GCCAATACCATTGCCATGGC+AGG 0.481585 5_3:-55836260 Msa0819370:CDS
GAGATATAAGGACCTTTACT+TGG 0.487618 5_3:+55836933 None:intergenic
AGTGTTGTCCTTAGCTTGCA+TGG 0.498460 5_3:+55836212 None:intergenic
GGTGGTTACAACCATGGTGG+AGG 0.499176 5_3:-55836366 Msa0819370:CDS
GGTGGCTACAACCATGGTGG+AGG 0.500815 5_3:-55836330 Msa0819370:CDS
GGATACAACCACGGTGGTGG+TGG 0.504414 5_3:-55836468 Msa0819370:CDS
GGTGGATACAACCACGGTGG+TGG 0.511490 5_3:-55836471 Msa0819370:CDS
AGAAAAGCAATCCTCATCCT+AGG 0.516305 5_3:-55836814 Msa0819370:CDS
GGATACAACAATGGTGGAGG+TGG 0.518813 5_3:-55836405 Msa0819370:CDS
GGATACAACAATGGTGGAGG+TGG 0.518813 5_3:-55836447 Msa0819370:CDS
GGAGGTTACAACCACGGCGG+TGG 0.523190 5_3:-55836546 Msa0819370:CDS
GGCTACAACCATGGTGGAGG+CGG 0.523424 5_3:-55836327 Msa0819370:CDS
GGCGGTTACAACCACGGTGG+AGG 0.523588 5_3:-55836288 Msa0819370:CDS
GGCGGTTACAACCACGGTGG+AGG 0.523588 5_3:-55836309 Msa0819370:CDS
GGATACAACCACGGTGGTGG+TGG 0.524452 5_3:-55836426 Msa0819370:CDS
GGTTACAACCACGGTGGTGG+TGG 0.527779 5_3:-55836507 Msa0819370:CDS
TATATATAATGGAGGGAAGG+AGG 0.528749 5_3:+55836910 None:intergenic
TAGCCAAGAGGCCTAGGATG+AGG 0.538496 5_3:+55836803 None:intergenic
ATTTGTTGCCATGCAAGCTA+AGG 0.539995 5_3:-55836220 Msa0819370:CDS
AATGGTGGTGGCTACAACCA+TGG 0.544536 5_3:-55836336 Msa0819370:CDS
GGTTACAACCACGGCGGTGG+TGG 0.544864 5_3:-55836543 Msa0819370:CDS
GGAGGTGGTTACAATGGTGG+TGG 0.545650 5_3:-55836348 Msa0819370:CDS
GGTTACAACCATGGTGGAGG+TGG 0.547395 5_3:-55836363 Msa0819370:CDS
GGAGGTTACAACCACGGTGG+TGG 0.547932 5_3:-55836510 Msa0819370:CDS
GGATACAACCACGGTGGTGG+TGG 0.553440 5_3:-55836384 Msa0819370:CDS
TTCCTCAGAAGTCTCAGCTA+GGG 0.554700 5_3:-55836767 Msa0819370:CDS
CCTTTACTTGGTAGTTGGGA+AGG 0.556036 5_3:+55836945 None:intergenic
GGTGGATACAACCACGGTGG+TGG 0.558361 5_3:-55836387 Msa0819370:CDS
GGTGGATACAACCACGGTGG+TGG 0.558361 5_3:-55836429 Msa0819370:CDS
CATGTGAGCAGCACCTGCCA+TGG 0.559419 5_3:+55836247 None:intergenic
TTTCCTCAGAAGTCTCAGCT+AGG 0.560253 5_3:-55836768 Msa0819370:CDS
CACGGCGGTGGTGGTTACAA+TGG 0.571191 5_3:-55836534 Msa0819370:CDS
GGTTACAACCACGGTGGAGG+CGG 0.572554 5_3:-55836285 Msa0819370:CDS
AACGATGCCAAATATGGTGG+AGG 0.573315 5_3:-55836564 Msa0819370:CDS
GGTTACAACCACGGTGGAGG+CGG 0.574574 5_3:-55836306 Msa0819370:CDS
ATATATAATGGAGGGAAGGA+GGG 0.578217 5_3:+55836911 None:intergenic
CCTTCCCAACTACCAAGTAA+AGG 0.580733 5_3:-55836945 Msa0819370:five_prime_UTR
CTCTATATATAATGGAGGGA+AGG 0.583052 5_3:+55836907 None:intergenic
GGTGGATACAACAATGGCGG+TGG 0.583166 5_3:-55836489 Msa0819370:CDS
GGCGGTGGTGGTTACAATGG+TGG 0.594919 5_3:-55836531 Msa0819370:CDS
GGTTGTAACCGCCTCCACCA+TGG 0.597627 5_3:+55836319 None:intergenic
CATGGTGGAGGTGGTTACAA+TGG 0.597788 5_3:-55836354 Msa0819370:CDS
GGTGGATACAACAATGGTGG+AGG 0.598383 5_3:-55836408 Msa0819370:CDS
GGTGGATACAACAATGGTGG+AGG 0.598383 5_3:-55836450 Msa0819370:CDS
GGTGGTGGTTACAATGGTGG+AGG 0.609526 5_3:-55836528 Msa0819370:CDS
GGTGGAGGTGGTTACAATGG+TGG 0.613370 5_3:-55836351 Msa0819370:CDS
GTGTGCTCTATATATAATGG+AGG 0.615419 5_3:+55836902 None:intergenic
AGCAGCACCTGCCATGGCAA+TGG 0.620983 5_3:+55836253 None:intergenic
TTTGAACAGATATTGAACAA+TGG 0.621738 5_3:-55836842 Msa0819370:exon
GGTGGTGGTGGTTACAACCA+TGG 0.640243 5_3:-55836372 Msa0819370:CDS
GGTGGAGGCGGTTACAACCA+CGG 0.641005 5_3:-55836315 Msa0819370:CDS
GGTTGCCAATACCATTGCCA+TGG 0.642022 5_3:-55836264 Msa0819370:CDS
GTCCCTAGCTGAGACTTCTG+AGG 0.645915 5_3:+55836765 None:intergenic
CATTGTAACCACCACCGCCG+TGG 0.646466 5_3:+55836535 None:intergenic
GTAAACGATGCCAAATATGG+TGG 0.647144 5_3:-55836567 Msa0819370:CDS
CATTGTAACCACCTCCACCA+TGG 0.649002 5_3:+55836355 None:intergenic
TGTGCTCTATATATAATGGA+GGG 0.663392 5_3:+55836903 None:intergenic
TAAGAAGAACCATAGCCAAG+AGG 0.664133 5_3:+55836791 None:intergenic
GGTGGTGGTGGATACAACAA+TGG 0.666044 5_3:-55836495 Msa0819370:CDS
GGTGGAGGCGGTTACAACCA+CGG 0.674017 5_3:-55836294 Msa0819370:CDS
GGTGGTGGATACAACAATGG+TGG 0.676280 5_3:-55836411 Msa0819370:CDS
GGTGGTGGATACAACAATGG+TGG 0.676280 5_3:-55836453 Msa0819370:CDS
ATTGGCAACCGCCTCCACCG+TGG 0.678280 5_3:+55836277 None:intergenic
GGTTGTAACCGCCTCCACCG+TGG 0.681332 5_3:+55836298 None:intergenic
GGTGGTGGTGGATACAACAA+TGG 0.684345 5_3:-55836414 Msa0819370:CDS
GGTGGTGGTGGATACAACAA+TGG 0.684345 5_3:-55836456 Msa0819370:CDS
TATGGTGGAGGTTACAACCA+CGG 0.702708 5_3:-55836552 Msa0819370:CDS
AATGGTGGAGGTTACAACCA+CGG 0.710899 5_3:-55836516 Msa0819370:CDS
TGTTGTATCCACCACCACCG+TGG 0.714982 5_3:+55836418 None:intergenic
TGTTGTATCCACCACCACCG+TGG 0.714982 5_3:+55836460 None:intergenic
TGTTGTATCCACCACCACCG+TGG 0.714982 5_3:+55836499 None:intergenic
GGTGGTGGCTACAACCATGG+TGG 0.723784 5_3:-55836333 Msa0819370:CDS
GGTGGAGGTGGATACAACCA+CGG 0.728168 5_3:-55836393 Msa0819370:CDS
GGTGGAGGTGGATACAACCA+CGG 0.728168 5_3:-55836435 Msa0819370:CDS
GGTGGTGGTTACAACCATGG+TGG 0.730633 5_3:-55836369 Msa0819370:CDS
AATGGCGGTGGATACAACCA+CGG 0.732761 5_3:-55836477 Msa0819370:CDS
GGTGGTGGATACAACAATGG+CGG 0.734675 5_3:-55836492 Msa0819370:CDS
GGTTGTAACCACCACCACCG+TGG 0.740537 5_3:+55836376 None:intergenic
GGCGGTGGATACAACCACGG+TGG 0.764343 5_3:-55836474 Msa0819370:CDS
GGAGGCGGTTACAACCACGG+TGG 0.788813 5_3:-55836312 Msa0819370:CDS
GGAGGCGGTTACAACCACGG+TGG 0.797498 5_3:-55836291 Msa0819370:CDS
GGTGGAGGTTACAACCACGG+TGG 0.812517 5_3:-55836513 Msa0819370:CDS
GGAGGTGGATACAACCACGG+TGG 0.823069 5_3:-55836390 Msa0819370:CDS
GGAGGTGGATACAACCACGG+TGG 0.823069 5_3:-55836432 Msa0819370:CDS
GGTGGAGGTTACAACCACGG+CGG 0.825418 5_3:-55836549 Msa0819370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTTTGAAGTATTGTT+TGG + chr5_3:55836326-55836345 None:intergenic 15.0%
!!! ATAAATTTTGAAGTATTGTT+TGG + chr5_3:55836326-55836345 None:intergenic 15.0%
! ATCTGTTCAAATGTGATATT+TGG + chr5_3:55836470-55836489 None:intergenic 25.0%
! TTTGAACAGATATTGAACAA+TGG - chr5_3:55836479-55836498 Msa0819370:CDS 25.0%
! ATCTGTTCAAATGTGATATT+TGG + chr5_3:55836470-55836489 None:intergenic 25.0%
! TTTGAACAGATATTGAACAA+TGG - chr5_3:55836479-55836498 Msa0819370:CDS 25.0%
! CAACAAAAATGCATGGTTTT+AGG + chr5_3:55836269-55836288 None:intergenic 30.0%
CAATGTACAACAAAAATGCA+TGG + chr5_3:55836276-55836295 None:intergenic 30.0%
! TGTGCTCTATATATAATGGA+GGG + chr5_3:55836421-55836440 None:intergenic 30.0%
GAAGTGTGCTCTATATATAA+TGG + chr5_3:55836425-55836444 None:intergenic 30.0%
! AATATATAGCTCACCCTTTT+TGG + chr5_3:55836604-55836623 None:intergenic 30.0%
! CAACAAAAATGCATGGTTTT+AGG + chr5_3:55836269-55836288 None:intergenic 30.0%
CAATGTACAACAAAAATGCA+TGG + chr5_3:55836276-55836295 None:intergenic 30.0%
! TGTGCTCTATATATAATGGA+GGG + chr5_3:55836421-55836440 None:intergenic 30.0%
GAAGTGTGCTCTATATATAA+TGG + chr5_3:55836425-55836444 None:intergenic 30.0%
! AATATATAGCTCACCCTTTT+TGG + chr5_3:55836604-55836623 None:intergenic 30.0%
GAGATATAAGGACCTTTACT+TGG + chr5_3:55836391-55836410 None:intergenic 35.0%
! ATATATAATGGAGGGAAGGA+GGG + chr5_3:55836413-55836432 None:intergenic 35.0%
! TATATATAATGGAGGGAAGG+AGG + chr5_3:55836414-55836433 None:intergenic 35.0%
! CTCTATATATAATGGAGGGA+AGG + chr5_3:55836417-55836436 None:intergenic 35.0%
GTGTGCTCTATATATAATGG+AGG + chr5_3:55836422-55836441 None:intergenic 35.0%
GAAGTAAACGATGCCAAATA+TGG - chr5_3:55836751-55836770 Msa0819370:CDS 35.0%
GAGATATAAGGACCTTTACT+TGG + chr5_3:55836391-55836410 None:intergenic 35.0%
! ATATATAATGGAGGGAAGGA+GGG + chr5_3:55836413-55836432 None:intergenic 35.0%
! TATATATAATGGAGGGAAGG+AGG + chr5_3:55836414-55836433 None:intergenic 35.0%
! CTCTATATATAATGGAGGGA+AGG + chr5_3:55836417-55836436 None:intergenic 35.0%
GTGTGCTCTATATATAATGG+AGG + chr5_3:55836422-55836441 None:intergenic 35.0%
GAAGTAAACGATGCCAAATA+TGG - chr5_3:55836751-55836770 Msa0819370:CDS 35.0%
! AGGACCTTTACTTGGTAGTT+GGG + chr5_3:55836383-55836402 None:intergenic 40.0%
! AAGGACCTTTACTTGGTAGT+TGG + chr5_3:55836384-55836403 None:intergenic 40.0%
AGAAAAGCAATCCTCATCCT+AGG - chr5_3:55836507-55836526 Msa0819370:CDS 40.0%
TAAGAAGAACCATAGCCAAG+AGG + chr5_3:55836533-55836552 None:intergenic 40.0%
AACTACCTCTGATGCCAAAA+AGG - chr5_3:55836587-55836606 Msa0819370:CDS 40.0%
ACTACCTCTGATGCCAAAAA+GGG - chr5_3:55836588-55836607 Msa0819370:CDS 40.0%
GTAAACGATGCCAAATATGG+TGG - chr5_3:55836754-55836773 Msa0819370:CDS 40.0%
GTTGTAACCTCCACCATATT+TGG + chr5_3:55836767-55836786 None:intergenic 40.0%
! ATTTGTTGCCATGCAAGCTA+AGG - chr5_3:55837101-55837120 Msa0819370:five_prime_UTR 40.0%
! AGGACCTTTACTTGGTAGTT+GGG + chr5_3:55836383-55836402 None:intergenic 40.0%
! AAGGACCTTTACTTGGTAGT+TGG + chr5_3:55836384-55836403 None:intergenic 40.0%
AGAAAAGCAATCCTCATCCT+AGG - chr5_3:55836507-55836526 Msa0819370:CDS 40.0%
TAAGAAGAACCATAGCCAAG+AGG + chr5_3:55836533-55836552 None:intergenic 40.0%
AACTACCTCTGATGCCAAAA+AGG - chr5_3:55836587-55836606 Msa0819370:CDS 40.0%
ACTACCTCTGATGCCAAAAA+GGG - chr5_3:55836588-55836607 Msa0819370:CDS 40.0%
GTAAACGATGCCAAATATGG+TGG - chr5_3:55836754-55836773 Msa0819370:CDS 40.0%
GTTGTAACCTCCACCATATT+TGG + chr5_3:55836767-55836786 None:intergenic 40.0%
! ATTTGTTGCCATGCAAGCTA+AGG - chr5_3:55837101-55837120 Msa0819370:five_prime_UTR 40.0%
! CCTTTACTTGGTAGTTGGGA+AGG + chr5_3:55836379-55836398 None:intergenic 45.0%
CCTTCCCAACTACCAAGTAA+AGG - chr5_3:55836376-55836395 Msa0819370:CDS 45.0%
TTTCCTCAGAAGTCTCAGCT+AGG - chr5_3:55836553-55836572 Msa0819370:CDS 45.0%
TTCCTCAGAAGTCTCAGCTA+GGG - chr5_3:55836554-55836573 Msa0819370:CDS 45.0%
AACGATGCCAAATATGGTGG+AGG - chr5_3:55836757-55836776 Msa0819370:CDS 45.0%
! TATGGTGGAGGTTACAACCA+CGG - chr5_3:55836769-55836788 Msa0819370:CDS 45.0%
! AATGGTGGAGGTTACAACCA+CGG - chr5_3:55836805-55836824 Msa0819370:CDS 45.0%
!! AGTGTTGTCCTTAGCTTGCA+TGG + chr5_3:55837112-55837131 None:intergenic 45.0%
! CCTTTACTTGGTAGTTGGGA+AGG + chr5_3:55836379-55836398 None:intergenic 45.0%
CCTTCCCAACTACCAAGTAA+AGG - chr5_3:55836376-55836395 Msa0819370:CDS 45.0%
TTTCCTCAGAAGTCTCAGCT+AGG - chr5_3:55836553-55836572 Msa0819370:CDS 45.0%
TTCCTCAGAAGTCTCAGCTA+GGG - chr5_3:55836554-55836573 Msa0819370:CDS 45.0%
AACGATGCCAAATATGGTGG+AGG - chr5_3:55836757-55836776 Msa0819370:CDS 45.0%
! TATGGTGGAGGTTACAACCA+CGG - chr5_3:55836769-55836788 Msa0819370:CDS 45.0%
! AATGGTGGAGGTTACAACCA+CGG - chr5_3:55836805-55836824 Msa0819370:CDS 45.0%
!! AGTGTTGTCCTTAGCTTGCA+TGG + chr5_3:55837112-55837131 None:intergenic 45.0%
GAGGGAAGGAGGGAGATATA+AGG + chr5_3:55836403-55836422 None:intergenic 50.0%
AATCCTCATCCTAGGCCTCT+TGG - chr5_3:55836515-55836534 Msa0819370:CDS 50.0%
!! CTCACCCTTTTTGGCATCAG+AGG + chr5_3:55836595-55836614 None:intergenic 50.0%
!! GGTGGTGGTGGATACAACAA+TGG - chr5_3:55836826-55836845 Msa0819370:CDS 50.0%
!! GGTGGTGGATACAACAATGG+CGG - chr5_3:55836829-55836848 Msa0819370:exon 50.0%
AATGGCGGTGGATACAACCA+CGG - chr5_3:55836844-55836863 Msa0819370:exon 50.0%
!! GGTGGTGGTGGATACAACAA+TGG - chr5_3:55836826-55836845 Msa0819370:CDS 50.0%
!! GGTGGTGGATACAACAATGG+TGG - chr5_3:55836829-55836848 Msa0819370:exon 50.0%
GGTGGATACAACAATGGTGG+AGG - chr5_3:55836871-55836890 Msa0819370:five_prime_UTR 50.0%
! GGATACAACAATGGTGGAGG+TGG - chr5_3:55836874-55836893 Msa0819370:five_prime_UTR 50.0%
!! GGTGGTGGTGGATACAACAA+TGG - chr5_3:55836826-55836845 Msa0819370:CDS 50.0%
!! GGTGGTGGATACAACAATGG+TGG - chr5_3:55836829-55836848 Msa0819370:exon 50.0%
GGTGGATACAACAATGGTGG+AGG - chr5_3:55836871-55836890 Msa0819370:five_prime_UTR 50.0%
! GGATACAACAATGGTGGAGG+TGG - chr5_3:55836874-55836893 Msa0819370:five_prime_UTR 50.0%
CATTGTAACCACCTCCACCA+TGG + chr5_3:55836969-55836988 None:intergenic 50.0%
! CATGGTGGAGGTGGTTACAA+TGG - chr5_3:55836967-55836986 Msa0819370:five_prime_UTR 50.0%
!! AATGGTGGTGGCTACAACCA+TGG - chr5_3:55836985-55837004 Msa0819370:five_prime_UTR 50.0%
GGTTGCCAATACCATTGCCA+TGG - chr5_3:55837057-55837076 Msa0819370:five_prime_UTR 50.0%
ACCTGCCATGGCAATGGTAT+TGG + chr5_3:55837065-55837084 None:intergenic 50.0%
GAGGGAAGGAGGGAGATATA+AGG + chr5_3:55836403-55836422 None:intergenic 50.0%
AATCCTCATCCTAGGCCTCT+TGG - chr5_3:55836515-55836534 Msa0819370:CDS 50.0%
!! CTCACCCTTTTTGGCATCAG+AGG + chr5_3:55836595-55836614 None:intergenic 50.0%
!! GGTGGTGGTGGATACAACAA+TGG - chr5_3:55836826-55836845 Msa0819370:CDS 50.0%
!! GGTGGTGGATACAACAATGG+CGG - chr5_3:55836829-55836848 Msa0819370:exon 50.0%
AATGGCGGTGGATACAACCA+CGG - chr5_3:55836844-55836863 Msa0819370:exon 50.0%
!! GGTGGTGGTGGATACAACAA+TGG - chr5_3:55836826-55836845 Msa0819370:CDS 50.0%
!! GGTGGTGGATACAACAATGG+TGG - chr5_3:55836829-55836848 Msa0819370:exon 50.0%
GGTGGATACAACAATGGTGG+AGG - chr5_3:55836871-55836890 Msa0819370:five_prime_UTR 50.0%
! GGATACAACAATGGTGGAGG+TGG - chr5_3:55836874-55836893 Msa0819370:five_prime_UTR 50.0%
!! GGTGGTGGTGGATACAACAA+TGG - chr5_3:55836826-55836845 Msa0819370:CDS 50.0%
!! GGTGGTGGATACAACAATGG+TGG - chr5_3:55836829-55836848 Msa0819370:exon 50.0%
GGTGGATACAACAATGGTGG+AGG - chr5_3:55836871-55836890 Msa0819370:five_prime_UTR 50.0%
! GGATACAACAATGGTGGAGG+TGG - chr5_3:55836874-55836893 Msa0819370:five_prime_UTR 50.0%
CATTGTAACCACCTCCACCA+TGG + chr5_3:55836969-55836988 None:intergenic 50.0%
! CATGGTGGAGGTGGTTACAA+TGG - chr5_3:55836967-55836986 Msa0819370:five_prime_UTR 50.0%
!! AATGGTGGTGGCTACAACCA+TGG - chr5_3:55836985-55837004 Msa0819370:five_prime_UTR 50.0%
GGTTGCCAATACCATTGCCA+TGG - chr5_3:55837057-55837076 Msa0819370:five_prime_UTR 50.0%
ACCTGCCATGGCAATGGTAT+TGG + chr5_3:55837065-55837084 None:intergenic 50.0%
TAGCCAAGAGGCCTAGGATG+AGG + chr5_3:55836521-55836540 None:intergenic 55.0%
CATCCTAGGCCTCTTGGCTA+TGG - chr5_3:55836521-55836540 Msa0819370:CDS 55.0%
GAACCATAGCCAAGAGGCCT+AGG + chr5_3:55836527-55836546 None:intergenic 55.0%
GTCCCTAGCTGAGACTTCTG+AGG + chr5_3:55836559-55836578 None:intergenic 55.0%
! GGTGGTGGTTACAATGGTGG+AGG - chr5_3:55836793-55836812 Msa0819370:CDS 55.0%
TGTTGTATCCACCACCACCG+TGG + chr5_3:55836825-55836844 None:intergenic 55.0%
GGTGGATACAACAATGGCGG+TGG - chr5_3:55836832-55836851 Msa0819370:exon 55.0%
TGTTGTATCCACCACCACCG+TGG + chr5_3:55836825-55836844 None:intergenic 55.0%
GGTGGAGGTGGATACAACCA+CGG - chr5_3:55836886-55836905 Msa0819370:five_prime_UTR 55.0%
TGTTGTATCCACCACCACCG+TGG + chr5_3:55836825-55836844 None:intergenic 55.0%
GGTGGAGGTGGATACAACCA+CGG - chr5_3:55836886-55836905 Msa0819370:five_prime_UTR 55.0%
!! GGTGGTGGTGGTTACAACCA+TGG - chr5_3:55836949-55836968 Msa0819370:five_prime_UTR 55.0%
! GGTGGTGGTTACAACCATGG+TGG - chr5_3:55836952-55836971 Msa0819370:five_prime_UTR 55.0%
GGTGGTTACAACCATGGTGG+AGG - chr5_3:55836955-55836974 Msa0819370:five_prime_UTR 55.0%
! GGTTACAACCATGGTGGAGG+TGG - chr5_3:55836958-55836977 Msa0819370:five_prime_UTR 55.0%
GGTGGAGGTGGTTACAATGG+TGG - chr5_3:55836970-55836989 Msa0819370:five_prime_UTR 55.0%
GGAGGTGGTTACAATGGTGG+TGG - chr5_3:55836973-55836992 Msa0819370:five_prime_UTR 55.0%
GCCAATACCATTGCCATGGC+AGG - chr5_3:55837061-55837080 Msa0819370:five_prime_UTR 55.0%
TAGCCAAGAGGCCTAGGATG+AGG + chr5_3:55836521-55836540 None:intergenic 55.0%
CATCCTAGGCCTCTTGGCTA+TGG - chr5_3:55836521-55836540 Msa0819370:CDS 55.0%
GAACCATAGCCAAGAGGCCT+AGG + chr5_3:55836527-55836546 None:intergenic 55.0%
GTCCCTAGCTGAGACTTCTG+AGG + chr5_3:55836559-55836578 None:intergenic 55.0%
! GGTGGTGGTTACAATGGTGG+AGG - chr5_3:55836793-55836812 Msa0819370:CDS 55.0%
TGTTGTATCCACCACCACCG+TGG + chr5_3:55836825-55836844 None:intergenic 55.0%
GGTGGATACAACAATGGCGG+TGG - chr5_3:55836832-55836851 Msa0819370:exon 55.0%
TGTTGTATCCACCACCACCG+TGG + chr5_3:55836825-55836844 None:intergenic 55.0%
GGTGGAGGTGGATACAACCA+CGG - chr5_3:55836886-55836905 Msa0819370:five_prime_UTR 55.0%
TGTTGTATCCACCACCACCG+TGG + chr5_3:55836825-55836844 None:intergenic 55.0%
GGTGGAGGTGGATACAACCA+CGG - chr5_3:55836886-55836905 Msa0819370:five_prime_UTR 55.0%
!! GGTGGTGGTGGTTACAACCA+TGG - chr5_3:55836949-55836968 Msa0819370:five_prime_UTR 55.0%
! GGTGGTGGTTACAACCATGG+TGG - chr5_3:55836952-55836971 Msa0819370:five_prime_UTR 55.0%
GGTGGTTACAACCATGGTGG+AGG - chr5_3:55836955-55836974 Msa0819370:five_prime_UTR 55.0%
! GGTTACAACCATGGTGGAGG+TGG - chr5_3:55836958-55836977 Msa0819370:five_prime_UTR 55.0%
GGTGGAGGTGGTTACAATGG+TGG - chr5_3:55836970-55836989 Msa0819370:five_prime_UTR 55.0%
GGAGGTGGTTACAATGGTGG+TGG - chr5_3:55836973-55836992 Msa0819370:five_prime_UTR 55.0%
GCCAATACCATTGCCATGGC+AGG - chr5_3:55837061-55837080 Msa0819370:five_prime_UTR 55.0%
GGTGGAGGTTACAACCACGG+CGG - chr5_3:55836772-55836791 Msa0819370:CDS 60.0%
CATTGTAACCACCACCGCCG+TGG + chr5_3:55836789-55836808 None:intergenic 60.0%
! CACGGCGGTGGTGGTTACAA+TGG - chr5_3:55836787-55836806 Msa0819370:CDS 60.0%
! GGCGGTGGTGGTTACAATGG+TGG - chr5_3:55836790-55836809 Msa0819370:CDS 60.0%
GGTGGAGGTTACAACCACGG+TGG - chr5_3:55836772-55836791 Msa0819370:CDS 60.0%
GGAGGTTACAACCACGGTGG+TGG - chr5_3:55836811-55836830 Msa0819370:CDS 60.0%
! GGTTACAACCACGGTGGTGG+TGG - chr5_3:55836814-55836833 Msa0819370:CDS 60.0%
GGTGGATACAACCACGGTGG+TGG - chr5_3:55836850-55836869 Msa0819370:five_prime_UTR 60.0%
! GGATACAACCACGGTGGTGG+TGG - chr5_3:55836853-55836872 Msa0819370:five_prime_UTR 60.0%
GGAGGTGGATACAACCACGG+TGG - chr5_3:55836889-55836908 Msa0819370:five_prime_UTR 60.0%
GGTGGATACAACCACGGTGG+TGG - chr5_3:55836850-55836869 Msa0819370:five_prime_UTR 60.0%
! GGATACAACCACGGTGGTGG+TGG - chr5_3:55836853-55836872 Msa0819370:five_prime_UTR 60.0%
GGAGGTGGATACAACCACGG+TGG - chr5_3:55836889-55836908 Msa0819370:five_prime_UTR 60.0%
GGTGGATACAACCACGGTGG+TGG - chr5_3:55836850-55836869 Msa0819370:five_prime_UTR 60.0%
! GGATACAACCACGGTGGTGG+TGG - chr5_3:55836853-55836872 Msa0819370:five_prime_UTR 60.0%
GGTTGTAACCACCACCACCG+TGG + chr5_3:55836948-55836967 None:intergenic 60.0%
! GGTGGTGGCTACAACCATGG+TGG - chr5_3:55836988-55837007 Msa0819370:five_prime_UTR 60.0%
GGTGGCTACAACCATGGTGG+AGG - chr5_3:55836991-55837010 Msa0819370:five_prime_UTR 60.0%
! GGCTACAACCATGGTGGAGG+CGG - chr5_3:55836994-55837013 Msa0819370:five_prime_UTR 60.0%
GGTTGTAACCGCCTCCACCA+TGG + chr5_3:55837005-55837024 None:intergenic 60.0%
GGTGGAGGCGGTTACAACCA+CGG - chr5_3:55837006-55837025 Msa0819370:five_prime_UTR 60.0%
GGTTACAACCACGGTGGAGG+CGG - chr5_3:55837015-55837034 Msa0819370:five_prime_UTR 60.0%
GGTGGAGGCGGTTACAACCA+CGG - chr5_3:55837006-55837025 Msa0819370:five_prime_UTR 60.0%
GGTTACAACCACGGTGGAGG+CGG - chr5_3:55837015-55837034 Msa0819370:five_prime_UTR 60.0%
AGCAGCACCTGCCATGGCAA+TGG + chr5_3:55837071-55837090 None:intergenic 60.0%
CATGTGAGCAGCACCTGCCA+TGG + chr5_3:55837077-55837096 None:intergenic 60.0%
GGTGGAGGTTACAACCACGG+CGG - chr5_3:55836772-55836791 Msa0819370:CDS 60.0%
CATTGTAACCACCACCGCCG+TGG + chr5_3:55836789-55836808 None:intergenic 60.0%
! CACGGCGGTGGTGGTTACAA+TGG - chr5_3:55836787-55836806 Msa0819370:CDS 60.0%
! GGCGGTGGTGGTTACAATGG+TGG - chr5_3:55836790-55836809 Msa0819370:CDS 60.0%
GGTGGAGGTTACAACCACGG+TGG - chr5_3:55836772-55836791 Msa0819370:CDS 60.0%
GGAGGTTACAACCACGGTGG+TGG - chr5_3:55836811-55836830 Msa0819370:CDS 60.0%
! GGTTACAACCACGGTGGTGG+TGG - chr5_3:55836814-55836833 Msa0819370:CDS 60.0%
GGTGGATACAACCACGGTGG+TGG - chr5_3:55836850-55836869 Msa0819370:five_prime_UTR 60.0%
! GGATACAACCACGGTGGTGG+TGG - chr5_3:55836853-55836872 Msa0819370:five_prime_UTR 60.0%
GGAGGTGGATACAACCACGG+TGG - chr5_3:55836889-55836908 Msa0819370:five_prime_UTR 60.0%
GGTGGATACAACCACGGTGG+TGG - chr5_3:55836850-55836869 Msa0819370:five_prime_UTR 60.0%
! GGATACAACCACGGTGGTGG+TGG - chr5_3:55836853-55836872 Msa0819370:five_prime_UTR 60.0%
GGAGGTGGATACAACCACGG+TGG - chr5_3:55836889-55836908 Msa0819370:five_prime_UTR 60.0%
GGTGGATACAACCACGGTGG+TGG - chr5_3:55836850-55836869 Msa0819370:five_prime_UTR 60.0%
! GGATACAACCACGGTGGTGG+TGG - chr5_3:55836853-55836872 Msa0819370:five_prime_UTR 60.0%
GGTTGTAACCACCACCACCG+TGG + chr5_3:55836948-55836967 None:intergenic 60.0%
! GGTGGTGGCTACAACCATGG+TGG - chr5_3:55836988-55837007 Msa0819370:five_prime_UTR 60.0%
GGTGGCTACAACCATGGTGG+AGG - chr5_3:55836991-55837010 Msa0819370:five_prime_UTR 60.0%
! GGCTACAACCATGGTGGAGG+CGG - chr5_3:55836994-55837013 Msa0819370:five_prime_UTR 60.0%
GGTTGTAACCGCCTCCACCA+TGG + chr5_3:55837005-55837024 None:intergenic 60.0%
GGTGGAGGCGGTTACAACCA+CGG - chr5_3:55837006-55837025 Msa0819370:five_prime_UTR 60.0%
GGTTACAACCACGGTGGAGG+CGG - chr5_3:55837015-55837034 Msa0819370:five_prime_UTR 60.0%
GGTGGAGGCGGTTACAACCA+CGG - chr5_3:55837006-55837025 Msa0819370:five_prime_UTR 60.0%
GGTTACAACCACGGTGGAGG+CGG - chr5_3:55837015-55837034 Msa0819370:five_prime_UTR 60.0%
AGCAGCACCTGCCATGGCAA+TGG + chr5_3:55837071-55837090 None:intergenic 60.0%
CATGTGAGCAGCACCTGCCA+TGG + chr5_3:55837077-55837096 None:intergenic 60.0%
GGAGGTTACAACCACGGCGG+TGG - chr5_3:55836775-55836794 Msa0819370:CDS 65.0%
GGTTACAACCACGGCGGTGG+TGG - chr5_3:55836778-55836797 Msa0819370:CDS 65.0%
GGCGGTGGATACAACCACGG+TGG - chr5_3:55836847-55836866 Msa0819370:five_prime_UTR 65.0%
GGAGGCGGTTACAACCACGG+TGG - chr5_3:55837009-55837028 Msa0819370:five_prime_UTR 65.0%
GGCGGTTACAACCACGGTGG+AGG - chr5_3:55837012-55837031 Msa0819370:five_prime_UTR 65.0%
GGTTGTAACCGCCTCCACCG+TGG + chr5_3:55837026-55837045 None:intergenic 65.0%
GGAGGCGGTTACAACCACGG+TGG - chr5_3:55837009-55837028 Msa0819370:five_prime_UTR 65.0%
GGCGGTTACAACCACGGTGG+AGG - chr5_3:55837012-55837031 Msa0819370:five_prime_UTR 65.0%
ATTGGCAACCGCCTCCACCG+TGG + chr5_3:55837047-55837066 None:intergenic 65.0%
GGAGGTTACAACCACGGCGG+TGG - chr5_3:55836775-55836794 Msa0819370:CDS 65.0%
GGTTACAACCACGGCGGTGG+TGG - chr5_3:55836778-55836797 Msa0819370:CDS 65.0%
GGCGGTGGATACAACCACGG+TGG - chr5_3:55836847-55836866 Msa0819370:five_prime_UTR 65.0%
GGAGGCGGTTACAACCACGG+TGG - chr5_3:55837009-55837028 Msa0819370:five_prime_UTR 65.0%
GGCGGTTACAACCACGGTGG+AGG - chr5_3:55837012-55837031 Msa0819370:five_prime_UTR 65.0%
GGTTGTAACCGCCTCCACCG+TGG + chr5_3:55837026-55837045 None:intergenic 65.0%
GGAGGCGGTTACAACCACGG+TGG - chr5_3:55837009-55837028 Msa0819370:five_prime_UTR 65.0%
GGCGGTTACAACCACGGTGG+AGG - chr5_3:55837012-55837031 Msa0819370:five_prime_UTR 65.0%
ATTGGCAACCGCCTCCACCG+TGG + chr5_3:55837047-55837066 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 55836203 55837140 55836203 ID=Msa0819370;Name=Msa0819370
chr5_3 mRNA 55836203 55837140 55836203 ID=Msa0819370-mRNA-1;Parent=Msa0819370;Name=Msa0819370-mRNA-1;_AED=0.15;_eAED=0.21;_QI=295|1|0.5|1|1|1|2|0|173
chr5_3 exon 55836203 55836612 55836203 ID=Msa0819370-mRNA-1:exon:16871;Parent=Msa0819370-mRNA-1
chr5_3 exon 55836734 55837140 55836734 ID=Msa0819370-mRNA-1:exon:16870;Parent=Msa0819370-mRNA-1
chr5_3 five_prime_UTR 55836846 55837140 55836846 ID=Msa0819370-mRNA-1:five_prime_utr;Parent=Msa0819370-mRNA-1
chr5_3 CDS 55836734 55836845 55836734 ID=Msa0819370-mRNA-1:cds;Parent=Msa0819370-mRNA-1
chr5_3 CDS 55836203 55836612 55836203 ID=Msa0819370-mRNA-1:cds;Parent=Msa0819370-mRNA-1
Gene Sequence

>Msa0819370

ATGGATTCGAGAAAAGCAATCCTCATCCTAGGCCTCTTGGCTATGGTTCTTCTTATTTCCTCAGAAGTCTCAGCTAGGGACTTAACTGAAACTACCTCTGATGCCAAAAAGGAAGTTGTTGAAAAGACTAATGAAGTAAACGATGCCAAATATGGTGGAGGTTACAACCACGGCGGTGGTGGTTACAATGGTGGAGGTTACAACCACGGTGGTGGTGGATACAACAATGGCGGTGGATACAACCACGGTGGTGGTGGATACAACAATGGTGGAGGTGGATACAACCACGGTGGTGGTGGATACAACAATGGTGGAGGTGGATACAACCACGGTGGTGGTGGTTACAACCATGGTGGAGGTGGTTACAATGGTGGTGGCTACAACCATGGTGGAGGCGGTTACAACCACGGTGGAGGCGGTTACAACCACGGTGGAGGCGGTTGCCAATACCATTGCCATGGCAGGTGCTGCTCACATGCTGAATTTGTTGCCATGCAAGCTAAGGACAACACTCAGAATTGA

Protein sequence

>Msa0819370

MDSRKAILILGLLAMVLLISSEVSARDLTETTSDAKKEVVEKTNEVNDAKYGGGYNHGGGGYNGGGYNHGGGGYNNGGGYNHGGGGYNNGGGGYNHGGGGYNNGGGGYNHGGGGYNHGGGGYNGGGYNHGGGGYNHGGGGYNHGGGGCQYHCHGRCCSHAEFVAMQAKDNTQN*