AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0806720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0806720 MtrunA17_Chr5g0421251 99.014 507 5 0 1 507 1 507 0.0 1000
Msa0806720 MtrunA17_Chr1g0152141 66.964 560 170 2 35 594 45 589 0.0 760
Msa0806720 MtrunA17_Chr1g0152151 66.964 560 170 2 35 594 45 589 0.0 758
Msa0806720 MtrunA17_Chr4g0028601 45.887 547 286 5 34 579 46 583 7.33e-168 491
Msa0806720 MtrunA17_Chr1g0196761 44.129 528 287 3 52 578 47 567 2.92e-153 454
Msa0806720 MtrunA17_Chr1g0196751 44.618 511 280 2 52 561 47 555 8.71e-151 447
Msa0806720 MtrunA17_Chr4g0043731 43.303 545 298 8 27 568 33 569 2.43e-149 444
Msa0806720 MtrunA17_Chr8g0342341 40.727 550 316 5 30 575 28 571 1.10e-138 416
Msa0806720 MtrunA17_Chr5g0421241 96.386 83 3 0 512 594 1 83 2.72e-53 177
Msa0806720 MtrunA17_Chr5g0440381 21.682 535 342 17 59 559 35 526 8.58e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0806720 AT1G26230.1 71.429 574 150 2 27 586 30 603 0.0 837
Msa0806720 AT1G26230.4 72.395 547 137 2 54 586 5 551 0.0 805
Msa0806720 AT1G26230.3 72.376 543 136 2 58 586 1 543 0.0 799
Msa0806720 AT1G26230.2 75.833 480 116 0 27 506 30 509 0.0 752
Msa0806720 AT1G55490.5 65.771 558 187 2 18 575 40 593 0.0 751
Msa0806720 AT1G55490.1 65.771 558 187 2 18 575 40 593 0.0 751
Msa0806720 AT1G55490.3 65.771 558 187 2 18 575 40 593 0.0 751
Msa0806720 AT1G55490.4 65.771 558 187 2 18 575 40 593 0.0 751
Msa0806720 AT1G55490.2 65.771 558 187 2 18 575 40 593 0.0 751
Msa0806720 AT3G13470.1 65.125 562 191 2 14 575 33 589 0.0 744
Msa0806720 AT5G56500.2 66.419 539 181 0 37 575 52 590 0.0 731
Msa0806720 AT5G56500.1 66.419 539 181 0 37 575 52 590 0.0 731
Msa0806720 AT1G26230.5 76.029 413 99 0 27 439 30 442 0.0 650
Msa0806720 AT2G28000.1 45.677 532 284 4 31 561 42 569 6.09e-164 482
Msa0806720 AT3G23990.1 43.640 511 285 2 52 561 46 554 7.71e-148 440
Msa0806720 AT2G33210.1 42.966 526 295 3 37 561 34 555 1.81e-146 437
Msa0806720 AT2G33210.2 42.776 526 291 4 37 561 34 550 4.67e-143 428
Msa0806720 AT3G13860.1 41.495 535 304 4 37 568 33 561 2.23e-142 426
Msa0806720 AT5G18820.1 40.517 580 329 7 4 581 5 570 2.62e-133 403
Msa0806720 AT5G18820.2 41.880 468 262 6 116 581 5 464 5.74e-110 339
Msa0806720 AT5G18820.3 40.097 414 241 4 4 416 5 412 3.41e-89 284
Msa0806720 AT3G11830.1 25.000 496 287 20 59 519 35 480 8.16e-13 71.6
Msa0806720 AT3G11830.2 24.848 495 287 20 59 519 35 478 3.64e-12 69.7

Find 123 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTACCTTGGTTGCATTTA+AGG 0.133783 5_3:+26605951 None:intergenic
GCTATTAAGGCTCCTGCTTT+TGG 0.153958 5_3:-26607379 Msa0806720:CDS
GCAGATGATAACATGAATTT+TGG 0.174735 5_3:-26605229 Msa0806720:CDS
GAAGGTGAATTTCGGTGTTT+TGG 0.202885 5_3:+26609348 None:intergenic
CCCTCTGCAACTATCAAAAT+TGG 0.234800 5_3:+26607466 None:intergenic
GAAAGGATAGCAAGATTATC+AGG 0.265173 5_3:-26606163 Msa0806720:CDS
AATATGTTCAGAAGCTCTTT+TGG 0.267990 5_3:+26607514 None:intergenic
TTCTCCATCATTTACTATCC+TGG 0.274149 5_3:+26609056 None:intergenic
ATGGTTGAAATAAAGATCTT+TGG 0.283879 5_3:+26609299 None:intergenic
GCTTAAGGTTGCTGCTATTA+AGG 0.285891 5_3:-26607392 Msa0806720:CDS
GAATTAGTCATGGGCATTCT+AGG 0.289012 5_3:+26604886 None:intergenic
AATATTTAGTATACCTTTGT+TGG 0.289037 5_3:+26605151 None:intergenic
CAAAAGTCTAGTAATATAAA+AGG 0.302752 5_3:+26604770 None:intergenic
GCCATCACCAACTAAGATAT+TGG 0.320538 5_3:+26608716 None:intergenic
TCTCAATCCCACGAGCAATT+TGG 0.323052 5_3:+26608327 None:intergenic
TACTGTAATAAGAGAAGATA+TGG 0.324638 5_3:-26606478 Msa0806720:CDS
GGAGAATGTTGGGGTTAAAT+TGG 0.330128 5_3:-26608760 Msa0806720:CDS
GGCATAGCCATGGGCTTTCT+AGG 0.333642 5_3:+26604907 None:intergenic
TAAACTTAGGGGTGTGCTTA+AGG 0.354930 5_3:-26607407 Msa0806720:CDS
AGAATGCCCATGACTAATTC+AGG 0.357212 5_3:-26604883 Msa0806720:CDS
CTCTTGTAGGTTATTGCAGC+TGG 0.366669 5_3:-26608362 Msa0806720:intron
CCTTCTTGGATAGTCTTAGA+AGG 0.370600 5_3:+26605813 None:intergenic
GGAGTAGTGACAATTGAAAA+AGG 0.378105 5_3:-26607764 Msa0806720:CDS
AAGATCCATTGGAGAATGTT+GGG 0.381308 5_3:-26608770 Msa0806720:CDS
GAAAATTGGTGCAGGTTGTT+AGG 0.385076 5_3:-26605044 Msa0806720:intron
GAAGATATTGCCATCTTGAC+TGG 0.394235 5_3:-26607334 Msa0806720:CDS
TTATTAATTTCAGATTGAAT+TGG 0.397182 5_3:-26608793 Msa0806720:intron
AATAGTCTAGAGATTGTAGA+AGG 0.400336 5_3:-26607728 Msa0806720:CDS
TCTCCATCATTTACTATCCT+GGG 0.409620 5_3:+26609057 None:intergenic
GTTGTGTTGCACAACAAGTA+TGG 0.420099 5_3:-26609084 Msa0806720:CDS
GAGCTGCTTGGTGTTACATT+GGG 0.422685 5_3:-26609123 Msa0806720:CDS
TGGTGTTACATTGGGTCCTA+AGG 0.423035 5_3:-26609115 Msa0806720:CDS
CTTCGATCGGTGACGAAGTA+GGG 0.424516 5_3:+26607677 None:intergenic
GAAAAGCACAGCTAAATTGT+TGG 0.427787 5_3:-26609465 Msa0806720:five_prime_UTR
ACATCTGTTGTTCTTGCTCA+TGG 0.432656 5_3:-26608687 Msa0806720:CDS
AATGATAATGTAGCAGATAT+AGG 0.438830 5_3:+26609390 None:intergenic
TTGCATAAAGTAGGAAGAAA+AGG 0.444825 5_3:-26607785 Msa0806720:CDS
GATTGAATTGGAAGATCCAT+TGG 0.446903 5_3:-26608781 Msa0806720:CDS
AATTTATATTACCTTAAGAA+TGG 0.448885 5_3:+26606132 None:intergenic
TACTGTCATCTTTCTTCGAT+CGG 0.449682 5_3:+26607664 None:intergenic
TACTCCCATCAGTGACTAGT+AGG 0.452379 5_3:+26606382 None:intergenic
TCTTCGATCGGTGACGAAGT+AGG 0.456122 5_3:+26607676 None:intergenic
CCTGGACAATGAAGAGCAAA+AGG 0.470185 5_3:-26605771 Msa0806720:intron
GATCTTTATTTCAACCATGA+TGG 0.471267 5_3:-26609294 Msa0806720:CDS
AACATTGCAGGCAGCAATTG+AGG 0.471687 5_3:-26605864 Msa0806720:intron
GACTTAGTGGCAGAGCTGCT+TGG 0.472024 5_3:-26609135 Msa0806720:CDS
AAAAGAAGATATTGAATGAA+AGG 0.474163 5_3:-26606180 Msa0806720:CDS
GAAGATCCATTGGAGAATGT+TGG 0.476886 5_3:-26608771 Msa0806720:CDS
GTAGGCAGGGGTGGACTTAG+TGG 0.480322 5_3:-26609148 Msa0806720:intron
ACAAACACAAGTAGAGTTGA+AGG 0.480475 5_3:-26605998 Msa0806720:CDS
ATGGGCTTTCTACGTTGTAA+TGG 0.483727 5_3:+26604937 None:intergenic
ATTGAGGAAGGTGTAGTAGT+TGG 0.497962 5_3:-26605848 Msa0806720:CDS
GTTAAATTGGTGAGACAAGC+TGG 0.504045 5_3:-26608747 Msa0806720:CDS
GGCTTTCTAGGCATAGCCAT+GGG 0.508926 5_3:+26604919 None:intergenic
ACCAATATCTTAGTTGGTGA+TGG 0.509209 5_3:-26608717 Msa0806720:CDS
ATCCCACGAGCAATTTGGAC+AGG 0.510632 5_3:+26608332 None:intergenic
AGAGCTGCTTGGTGTTACAT+TGG 0.512060 5_3:-26609124 Msa0806720:CDS
CTAGAGAAGCAATTGAAAAG+AGG 0.512949 5_3:-26606359 Msa0806720:CDS
TCAAATTAAGATCCTTGTTG+AGG 0.513328 5_3:-26606331 Msa0806720:intron
TCTCATGAAGGCTAGAATCA+TGG 0.516872 5_3:-26605176 Msa0806720:CDS
CTCTTGCGTTCCCCAAAAGC+AGG 0.519386 5_3:+26607367 None:intergenic
TGATACAAGAAGCTTCTTTG+TGG 0.525215 5_3:+26609266 None:intergenic
TGGCAATGTTGTCATAGATA+AGG 0.527203 5_3:-26605373 Msa0806720:intron
TCTAATACCTGAATTAGTCA+TGG 0.529536 5_3:+26604876 None:intergenic
TCTGAGGCTTTGCATAAAGT+AGG 0.532283 5_3:-26607794 Msa0806720:CDS
GCAGGGAACGATTATGTTGT+CGG 0.534522 5_3:-26607827 Msa0806720:CDS
AACACAACATTTCTTCCCTT+AGG 0.534711 5_3:+26609099 None:intergenic
TCTTTGTGGTTGAACCATCA+TGG 0.536125 5_3:+26609280 None:intergenic
AGAACCAAGCACATCCGTGC+TGG 0.538805 5_3:+26606437 None:intergenic
CTTTGCGGTGTAGGCAGGGG+TGG 0.538867 5_3:-26609157 Msa0806720:intron
CTTAATCAAAGAGGGAATGA+AGG 0.545189 5_3:-26608664 Msa0806720:intron
AAAGCCAGCACGGATGTGCT+TGG 0.551613 5_3:-26606441 Msa0806720:CDS
AGTTGCAGAGGGAATTGAGC+AGG 0.552599 5_3:-26607455 Msa0806720:CDS
TAGAGAAGCAATTGAAAAGA+GGG 0.557169 5_3:-26606358 Msa0806720:CDS
TGCTCATGGCTTAATCAAAG+AGG 0.559327 5_3:-26608673 Msa0806720:CDS
TATAGAGCATGCAGCTTCTG+TGG 0.561462 5_3:-26605016 Msa0806720:CDS
GAAGGTGTAGTAGTTGGTGG+TGG 0.561709 5_3:-26605842 Msa0806720:CDS
CCACCCAGGATAGTAAATGA+TGG 0.563310 5_3:-26609060 Msa0806720:CDS
CTAATACCTGAATTAGTCAT+GGG 0.563335 5_3:+26604877 None:intergenic
AATGTAGCAGATATAGGTGA+TGG 0.563556 5_3:+26609396 None:intergenic
TCTACCCTACTAGTCACTGA+TGG 0.564415 5_3:-26606387 Msa0806720:CDS
TCTTATACCTCCAGTCAAGA+TGG 0.565620 5_3:+26607324 None:intergenic
TGCTGCTAGAGACTGTTATG+AGG 0.567003 5_3:-26605200 Msa0806720:CDS
TGGAGAAACTGTTCTCAAAG+AGG 0.567318 5_3:-26609040 Msa0806720:intron
GGGCTTTCTAGGCATAGCCA+TGG 0.567432 5_3:+26604918 None:intergenic
GACAACATTGCCATTTACAC+CGG 0.568042 5_3:+26605383 None:intergenic
TGCTGTTGTGATTGACCGCA+TGG 0.570375 5_3:-26604971 Msa0806720:CDS
GGTGTTACATTGGGTCCTAA+GGG 0.572289 5_3:-26609114 Msa0806720:CDS
GCTCATGGCTTAATCAAAGA+GGG 0.577420 5_3:-26608672 Msa0806720:CDS
TATGTTGCAGAAGTCAGCGC+AGG 0.579617 5_3:-26607845 Msa0806720:CDS
CTGTTATGAGGATCTCATGA+AGG 0.584426 5_3:-26605188 Msa0806720:CDS
TTAACCCCAACATTCTCCAA+TGG 0.585067 5_3:+26608765 None:intergenic
GGGCATTCTAGGCATAGCCA+TGG 0.589080 5_3:+26604897 None:intergenic
ACTCCCATCAGTGACTAGTA+GGG 0.589248 5_3:+26606383 None:intergenic
AGGTGATGGAGAAGATGTCA+TGG 0.591738 5_3:+26609410 None:intergenic
AAAGGATAGCAAGATTATCA+GGG 0.602789 5_3:-26606162 Msa0806720:CDS
CTACCCTACTAGTCACTGAT+GGG 0.603767 5_3:-26606386 Msa0806720:CDS
GAGGAAGGTGTAGTAGTTGG+TGG 0.604792 5_3:-26605845 Msa0806720:CDS
AATCCTGTCCAAATTGCTCG+TGG 0.610174 5_3:-26608335 Msa0806720:CDS
GGCTATGCCTAGAAAGCCCA+TGG 0.611650 5_3:-26604914 Msa0806720:CDS
TGTCGGAAACATGATTTCTG+AGG 0.613481 5_3:-26607810 Msa0806720:CDS
CCTTCTAAGACTATCCAAGA+AGG 0.614465 5_3:-26605813 Msa0806720:CDS
ACTAATTCAGGTATTAGAGT+GGG 0.614833 5_3:-26604871 Msa0806720:CDS
ACTGTAATAAGAGAAGATAT+GGG 0.620581 5_3:-26606477 Msa0806720:CDS
GACTAATTCAGGTATTAGAG+TGG 0.621274 5_3:-26604872 Msa0806720:CDS
TTGTGTTGCACAACAAGTAT+GGG 0.623105 5_3:-26609083 Msa0806720:CDS
AGATCCATTGGAGAATGTTG+GGG 0.623470 5_3:-26608769 Msa0806720:CDS
GGCATTCTAGGCATAGCCAT+GGG 0.628138 5_3:+26604898 None:intergenic
TCTAAGACTATCCAAGAAGG+TGG 0.633828 5_3:-26605810 Msa0806720:CDS
TTGCAGGCAGCAATTGAGGA+AGG 0.634346 5_3:-26605860 Msa0806720:intron
ATCCTGTCCAAATTGCTCGT+GGG 0.638174 5_3:-26608334 Msa0806720:CDS
CCATCATTTACTATCCTGGG+TGG 0.643127 5_3:+26609060 None:intergenic
AGATGCCTTAAATGCAACCA+AGG 0.644330 5_3:-26605956 Msa0806720:intron
GAAGGAATGCAATTCGATCG+CGG 0.648682 5_3:-26607710 Msa0806720:CDS
ACAACAAGTATGGGCCACCC+AGG 0.649218 5_3:-26609074 Msa0806720:CDS
TAGAATCATGGATCCAACAA+AGG 0.660491 5_3:-26605164 Msa0806720:intron
GATATTGCCATCTTGACTGG+AGG 0.662526 5_3:-26607331 Msa0806720:intron
AGTAGATCTTCACAACTGCA+AGG 0.668006 5_3:-26607645 Msa0806720:intron
ATTACAACGTAGAAAGCCCA+TGG 0.668199 5_3:-26604935 Msa0806720:CDS
ATGTTGCAGAAGTCAGCGCA+GGG 0.672978 5_3:-26607844 Msa0806720:CDS
AAGGATAGCAAGATTATCAG+GGG 0.686126 5_3:-26606161 Msa0806720:CDS
ATGGTTGTTCTAGTTCCATG+CGG 0.719533 5_3:+26604956 None:intergenic
AGGATAGCAAGATTATCAGG+GGG 0.726273 5_3:-26606160 Msa0806720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAATTCTATAAAATAATT+AGG - chr5_3:26606702-26606721 Msa0806720:intron 10.0%
!!! CTAAGTTTATTTTTAATAAT+TGG + chr5_3:26606875-26606894 None:intergenic 10.0%
!! CAATTATTAAAAATAAACTT+AGG - chr5_3:26606873-26606892 Msa0806720:intron 10.0%
!! ATTATTAAAAATAAACTTAG+GGG - chr5_3:26606875-26606894 Msa0806720:intron 10.0%
!!! AATCATTTTATTTTCATTTT+TGG - chr5_3:26608186-26608205 Msa0806720:intron 10.0%
!!! AATGTTTTATATATTACAAT+TGG - chr5_3:26609458-26609477 Msa0806720:five_prime_UTR 10.0%
!! TTTGTGTTTAATAAAAAAGA+AGG + chr5_3:26604966-26604985 None:intergenic 15.0%
!! TTATTAATTTCAGATTGAAT+TGG - chr5_3:26605500-26605519 Msa0806720:intron 15.0%
!! AAACAAAAATCATAGAAAAA+TGG + chr5_3:26606246-26606265 None:intergenic 15.0%
!!! TTTCATTACTATTCTAAAAA+TGG + chr5_3:26606289-26606308 None:intergenic 15.0%
!! ATACGATAATAATTCATTAA+AGG - chr5_3:26607303-26607322 Msa0806720:intron 15.0%
!! AATTTATATTACCTTAAGAA+TGG + chr5_3:26608164-26608183 None:intergenic 15.0%
!!! AATTATTCAATGAGATTTTT+TGG - chr5_3:26608981-26609000 Msa0806720:intron 15.0%
!! ATAAAAAAGAAGGTGAATTT+CGG + chr5_3:26604956-26604975 None:intergenic 20.0%
!! TTAATTAAACCATAAGAATG+TGG + chr5_3:26605339-26605358 None:intergenic 20.0%
!!! ACCATATTTGAAAGTTTTAA+TGG - chr5_3:26605763-26605782 Msa0806720:intron 20.0%
!! TCCATTAAAACTTTCAAATA+TGG + chr5_3:26605767-26605786 None:intergenic 20.0%
!!! TTTGCAATTTTGGAATATTT+TGG + chr5_3:26605820-26605839 None:intergenic 20.0%
!!! AAATCATAGAAAAATGGATT+TGG + chr5_3:26606240-26606259 None:intergenic 20.0%
!!! ATTTTATAGAATTCATGTGA+GGG + chr5_3:26606698-26606717 None:intergenic 20.0%
!!! TATTTTATAGAATTCATGTG+AGG + chr5_3:26606699-26606718 None:intergenic 20.0%
!! TAATGTAAAGTCAAAATTAC+AGG + chr5_3:26607108-26607127 None:intergenic 20.0%
!!! TTTGACTTTACATTACAATA+TGG - chr5_3:26607113-26607132 Msa0806720:intron 20.0%
!! TTCAAACTTTATCATATCTT+TGG + chr5_3:26607386-26607405 None:intergenic 20.0%
!! TCTAATATTATACAATGATC+TGG + chr5_3:26607999-26608018 None:intergenic 20.0%
!! AAAAGAAGATATTGAATGAA+AGG - chr5_3:26608113-26608132 Msa0806720:intron 20.0%
!!! TTATTTTCATTTTTGGTATC+AGG - chr5_3:26608193-26608212 Msa0806720:intron 20.0%
!! TCAGTAACTATTTAGAAAAA+TGG - chr5_3:26608652-26608671 Msa0806720:intron 20.0%
!! TAAATATTCAAACCAACAAA+AGG + chr5_3:26608791-26608810 None:intergenic 20.0%
!! AATATTTAGTATACCTTTGT+TGG + chr5_3:26609145-26609164 None:intergenic 20.0%
!! GTATTATGTATGTTGAAAAT+TGG - chr5_3:26609235-26609254 Msa0806720:intron 20.0%
!! TGAAAAATACAGCAATGTTT+TGG + chr5_3:26604789-26604808 None:intergenic 25.0%
!!! TTTTGATTTTCTTGGTATGT+TGG + chr5_3:26604863-26604882 None:intergenic 25.0%
!! AATGATAATGTAGCAGATAT+AGG + chr5_3:26604906-26604925 None:intergenic 25.0%
! ATGGTTGAAATAAAGATCTT+TGG + chr5_3:26604997-26605016 None:intergenic 25.0%
!! GTGGTAAATGGTAATTTTAT+GGG + chr5_3:26605320-26605339 None:intergenic 25.0%
!! TGTGGTAAATGGTAATTTTA+TGG + chr5_3:26605321-26605340 None:intergenic 25.0%
!! TTGGAACACTAAACTAATTT+TGG + chr5_3:26605708-26605727 None:intergenic 25.0%
!!! GATATTTTGATTGAAGTTGT+TGG + chr5_3:26605727-26605746 None:intergenic 25.0%
! CAAAATTGCAAATGAAGTTT+GGG - chr5_3:26605828-26605847 Msa0806720:CDS 25.0%
!! ATGAAAAGAGCACAAATTTA+AGG + chr5_3:26605910-26605929 None:intergenic 25.0%
!!! GAAATACCGATTTTGAAATA+TGG - chr5_3:26606154-26606173 Msa0806720:CDS 25.0%
! AATGAATTATTATCGTATGC+TGG + chr5_3:26607301-26607320 None:intergenic 25.0%
! TGGAAAACAACATTATTGTA+CGG + chr5_3:26607366-26607385 None:intergenic 25.0%
! ATGATAAAGTTTGAATTGCA+TGG - chr5_3:26607391-26607410 Msa0806720:CDS 25.0%
! AACCAAATTTATAGAGGAAA+AGG - chr5_3:26607462-26607481 Msa0806720:CDS 25.0%
!!! ATTCATGGTTGTTTTGTTAT+TGG + chr5_3:26607586-26607605 None:intergenic 25.0%
! TACTGTAATAAGAGAAGATA+TGG - chr5_3:26607815-26607834 Msa0806720:CDS 25.0%
! ACTGTAATAAGAGAAGATAT+GGG - chr5_3:26607816-26607835 Msa0806720:CDS 25.0%
!! ATCTTTTGTAATGACAACTT+TGG + chr5_3:26607886-26607905 None:intergenic 25.0%
! ATTAGAATGAATTTGATGCA+TGG - chr5_3:26608013-26608032 Msa0806720:intron 25.0%
! TAGTTAACAACATCTGAAAA+AGG - chr5_3:26608040-26608059 Msa0806720:intron 25.0%
! GTATTCTACAAAATACGAAA+TGG + chr5_3:26608079-26608098 None:intergenic 25.0%
! AGAACCTGAATCTAAATTAT+AGG - chr5_3:26608265-26608284 Msa0806720:intron 25.0%
!! ATTCTAATTTGTAACATTGC+AGG - chr5_3:26608417-26608436 Msa0806720:intron 25.0%
! TTGTAATGTTATCTGTAGAT+TGG - chr5_3:26608831-26608850 Msa0806720:intron 25.0%
!!! TTTTTCGCTATCATTTTAGT+AGG + chr5_3:26608888-26608907 None:intergenic 25.0%
!! TTTTACTTATATCTTCTGTG+AGG + chr5_3:26609174-26609193 None:intergenic 25.0%
!!! TGTCATGGTTTTGATTTTCT+TGG + chr5_3:26604871-26604890 None:intergenic 30.0%
! GATCTTTATTTCAACCATGA+TGG - chr5_3:26604999-26605018 Msa0806720:CDS 30.0%
! AGTGAGTGAATTTTTCTTTG+CGG - chr5_3:26605121-26605140 Msa0806720:intron 30.0%
TACCATTTACCACATTCTTA+TGG - chr5_3:26605327-26605346 Msa0806720:intron 30.0%
AACCATAAGAATGTGGTAAA+TGG + chr5_3:26605332-26605351 None:intergenic 30.0%
GTTTAATAGGTCTAAGAACA+TGG - chr5_3:26605464-26605483 Msa0806720:intron 30.0%
GCAAAAACCAATATCTTAGT+TGG - chr5_3:26605570-26605589 Msa0806720:intron 30.0%
! CCAAACTTCATTTGCAATTT+TGG + chr5_3:26605830-26605849 None:intergenic 30.0%
CCAAAATTGCAAATGAAGTT+TGG - chr5_3:26605827-26605846 Msa0806720:CDS 30.0%
!! CACAAATGCTATTGACTTTA+GGG - chr5_3:26605880-26605899 Msa0806720:intron 30.0%
!! ACAAATGCTATTGACTTTAG+GGG - chr5_3:26605881-26605900 Msa0806720:intron 30.0%
AGCACTCCATATTTCAAAAT+CGG + chr5_3:26606163-26606182 None:intergenic 30.0%
!!! ATTTTGAAATATGGAGTGCT+TGG - chr5_3:26606163-26606182 Msa0806720:CDS 30.0%
!! TTTACACACTTTGAGATGAA+TGG - chr5_3:26606263-26606282 Msa0806720:intron 30.0%
TTGCTGAATTCAGAAACATT+GGG - chr5_3:26606390-26606409 Msa0806720:CDS 30.0%
TTGCATAAAGTAGGAAGAAA+AGG - chr5_3:26606508-26606527 Msa0806720:intron 30.0%
AATAGTCTAGAGATTGTAGA+AGG - chr5_3:26606565-26606584 Msa0806720:intron 30.0%
! AATATGTTCAGAAGCTCTTT+TGG + chr5_3:26606782-26606801 None:intergenic 30.0%
CACAAAGATAGCATCAAAAT+TGG - chr5_3:26607191-26607210 Msa0806720:intron 30.0%
ACAACGAACCAAATTTATAG+AGG - chr5_3:26607456-26607475 Msa0806720:CDS 30.0%
! AGCCTTTTCCTCTATAAATT+TGG + chr5_3:26607467-26607486 None:intergenic 30.0%
!!! GGTTGTTTTGTTATTGGTTT+AGG + chr5_3:26607580-26607599 None:intergenic 30.0%
ACCATATTGTTCAATTCACT+CGG + chr5_3:26607693-26607712 None:intergenic 30.0%
GAACAATATGGTAGAATACA+TGG - chr5_3:26607701-26607720 Msa0806720:CDS 30.0%
ATATTTACTCAGTGCATTCT+TGG - chr5_3:26607781-26607800 Msa0806720:CDS 30.0%
TAGAGAAGCAATTGAAAAGA+GGG - chr5_3:26607935-26607954 Msa0806720:intron 30.0%
TCAAATTAAGATCCTTGTTG+AGG - chr5_3:26607962-26607981 Msa0806720:intron 30.0%
AAAGGATAGCAAGATTATCA+GGG - chr5_3:26608131-26608150 Msa0806720:intron 30.0%
CCTACCTATAATTTAGATTC+AGG + chr5_3:26608272-26608291 None:intergenic 30.0%
CCTGAATCTAAATTATAGGT+AGG - chr5_3:26608269-26608288 Msa0806720:intron 30.0%
!!! TTTGGTTTGTATCCTTTTGT+TGG - chr5_3:26608776-26608795 Msa0806720:CDS 30.0%
! AAAATGATAGCGAAAAATGC+CGG - chr5_3:26608891-26608910 Msa0806720:intron 30.0%
! GCAGATGATAACATGAATTT+TGG - chr5_3:26609064-26609083 Msa0806720:CDS 30.0%
CTAATACCTGAATTAGTCAT+GGG + chr5_3:26609419-26609438 None:intergenic 30.0%
TCTAATACCTGAATTAGTCA+TGG + chr5_3:26609420-26609439 None:intergenic 30.0%
ACTAATTCAGGTATTAGAGT+GGG - chr5_3:26609422-26609441 Msa0806720:exon 30.0%
! GAAAAGCACAGCTAAATTGT+TGG - chr5_3:26604828-26604847 Msa0806720:CDS 35.0%
! GATTTTCTTGGTATGTTGGT+TGG + chr5_3:26604859-26604878 None:intergenic 35.0%
AATGTAGCAGATATAGGTGA+TGG + chr5_3:26604900-26604919 None:intergenic 35.0%
TGATACAAGAAGCTTCTTTG+TGG + chr5_3:26605030-26605049 None:intergenic 35.0%
! TGAATTTTTCTTTGCGGTGT+AGG - chr5_3:26605127-26605146 Msa0806720:intron 35.0%
AACACAACATTTCTTCCCTT+AGG + chr5_3:26605197-26605216 None:intergenic 35.0%
TTGTGTTGCACAACAAGTAT+GGG - chr5_3:26605210-26605229 Msa0806720:CDS 35.0%
TCTCCATCATTTACTATCCT+GGG + chr5_3:26605239-26605258 None:intergenic 35.0%
TTCTCCATCATTTACTATCC+TGG + chr5_3:26605240-26605259 None:intergenic 35.0%
TGGGTGAATGACTAAAAAGA+AGG + chr5_3:26605301-26605320 None:intergenic 35.0%
TTGATTGACTGTACCACAAT+TGG - chr5_3:26605397-26605416 Msa0806720:CDS 35.0%
TGAAAAATCACCTCCAATTG+TGG + chr5_3:26605413-26605432 None:intergenic 35.0%
CTATTAAACCACCTAAGCAA+CGG + chr5_3:26605453-26605472 None:intergenic 35.0%
GATTGAATTGGAAGATCCAT+TGG - chr5_3:26605512-26605531 Msa0806720:intron 35.0%
AAGATCCATTGGAGAATGTT+GGG - chr5_3:26605523-26605542 Msa0806720:intron 35.0%
!! ACCAATATCTTAGTTGGTGA+TGG - chr5_3:26605576-26605595 Msa0806720:intron 35.0%
CTTAATCAAAGAGGGAATGA+AGG - chr5_3:26605629-26605648 Msa0806720:intron 35.0%
GTAGATGGAATAGTCATGTA+TGG + chr5_3:26605668-26605687 None:intergenic 35.0%
ACTATTCCATCTACTTCTGT+TGG - chr5_3:26605674-26605693 Msa0806720:intron 35.0%
ATTGTTCCAACAGAAGTAGA+TGG + chr5_3:26605683-26605702 None:intergenic 35.0%
TTTGTGGCGTAAGCATATAA+TGG + chr5_3:26605866-26605885 None:intergenic 35.0%
CCTAAAGTCAATAGCATTTG+TGG + chr5_3:26605882-26605901 None:intergenic 35.0%
!! CCACAAATGCTATTGACTTT+AGG - chr5_3:26605879-26605898 Msa0806720:intron 35.0%
! TGCTCTTTTCATTCTCTTGT+AGG - chr5_3:26605918-26605937 Msa0806720:intron 35.0%
AACTACAAGCGAGAATTGAT+AGG + chr5_3:26606362-26606381 None:intergenic 35.0%
TATCAATTCTCGCTTGTAGT+TGG - chr5_3:26606361-26606380 Msa0806720:CDS 35.0%
CTTGCTGAATTCAGAAACAT+TGG - chr5_3:26606389-26606408 Msa0806720:CDS 35.0%
TGCTGAATTCAGAAACATTG+GGG - chr5_3:26606391-26606410 Msa0806720:CDS 35.0%
GGAGTAGTGACAATTGAAAA+AGG - chr5_3:26606529-26606548 Msa0806720:intron 35.0%
TACTGTCATCTTTCTTCGAT+CGG + chr5_3:26606632-26606651 None:intergenic 35.0%
!! TCCAATTTTGATAGTTGCAG+AGG - chr5_3:26606826-26606845 Msa0806720:intron 35.0%
!! CCAATTTTGATAGTTGCAGA+GGG - chr5_3:26606827-26606846 Msa0806720:intron 35.0%
TATGCAAAAACATCACTGCT+TGG - chr5_3:26607251-26607270 Msa0806720:intron 35.0%
! TTGTACGGACAAATTGACTT+TGG + chr5_3:26607351-26607370 None:intergenic 35.0%
ATTGAAGTGGCTTATAGTAG+AGG + chr5_3:26607535-26607554 None:intergenic 35.0%
!! TATTGGTTTAGGCATTACAC+TGG + chr5_3:26607569-26607588 None:intergenic 35.0%
ATATTGTTCAATTCACTCGG+TGG + chr5_3:26607690-26607709 None:intergenic 35.0%
ACCGAGTGAATTGAACAATA+TGG - chr5_3:26607689-26607708 Msa0806720:CDS 35.0%
CAATATGGTAGAATACATGG+TGG - chr5_3:26607704-26607723 Msa0806720:CDS 35.0%
CTAAGATCAAAAGCTAGTGA+TGG + chr5_3:26607736-26607755 None:intergenic 35.0%
CTAGAGAAGCAATTGAAAAG+AGG - chr5_3:26607934-26607953 Msa0806720:intron 35.0%
GAAAGGATAGCAAGATTATC+AGG - chr5_3:26608130-26608149 Msa0806720:intron 35.0%
AAGGATAGCAAGATTATCAG+GGG - chr5_3:26608132-26608151 Msa0806720:intron 35.0%
ACAAACACAAGTAGAGTTGA+AGG - chr5_3:26608295-26608314 Msa0806720:CDS 35.0%
AAGTACCTTGGTTGCATTTA+AGG + chr5_3:26608345-26608364 None:intergenic 35.0%
ACACATTGAAGCAGAGAAAA+AGG + chr5_3:26608368-26608387 None:intergenic 35.0%
! TTTTATGCTATCCACCTTCT+TGG + chr5_3:26608497-26608516 None:intergenic 35.0%
GGATAGCATAAAAATTCTCC+TGG - chr5_3:26608504-26608523 Msa0806720:intron 35.0%
GAATGAATGTAAGCTCATGT+CGG - chr5_3:26608682-26608701 Msa0806720:CDS 35.0%
! TCTGTTGCAAGCATTCTTTT+TGG - chr5_3:26608758-26608777 Msa0806720:CDS 35.0%
TGGCAATGTTGTCATAGATA+AGG - chr5_3:26608920-26608939 Msa0806720:intron 35.0%
TAGAATCATGGATCCAACAA+AGG - chr5_3:26609129-26609148 Msa0806720:CDS 35.0%
TGTATGTTGAAAATTGGTGC+AGG - chr5_3:26609241-26609260 Msa0806720:intron 35.0%
GACTAATTCAGGTATTAGAG+TGG - chr5_3:26609421-26609440 Msa0806720:exon 35.0%
!!! CGGTGTTTTGGAATTGATGA+TGG + chr5_3:26604936-26604955 None:intergenic 40.0%
!!! GAAGGTGAATTTCGGTGTTT+TGG + chr5_3:26604948-26604967 None:intergenic 40.0%
TCTTTGTGGTTGAACCATCA+TGG + chr5_3:26605016-26605035 None:intergenic 40.0%
GTTGTGTTGCACAACAAGTA+TGG - chr5_3:26605209-26605228 Msa0806720:CDS 40.0%
TGGAGAAACTGTTCTCAAAG+AGG - chr5_3:26605253-26605272 Msa0806720:intron 40.0%
ATTGACTGTACCACAATTGG+AGG - chr5_3:26605400-26605419 Msa0806720:CDS 40.0%
AAACACTTGTACCGTTGCTT+AGG - chr5_3:26605439-26605458 Msa0806720:CDS 40.0%
CGTTGCTTAGGTGGTTTAAT+AGG - chr5_3:26605451-26605470 Msa0806720:intron 40.0%
GAAGATCCATTGGAGAATGT+TGG - chr5_3:26605522-26605541 Msa0806720:intron 40.0%
AGATCCATTGGAGAATGTTG+GGG - chr5_3:26605524-26605543 Msa0806720:intron 40.0%
TTAACCCCAACATTCTCCAA+TGG + chr5_3:26605531-26605550 None:intergenic 40.0%
GGAGAATGTTGGGGTTAAAT+TGG - chr5_3:26605533-26605552 Msa0806720:intron 40.0%
GTTAAATTGGTGAGACAAGC+TGG - chr5_3:26605546-26605565 Msa0806720:intron 40.0%
GCCATCACCAACTAAGATAT+TGG + chr5_3:26605580-26605599 None:intergenic 40.0%
ACATCTGTTGTTCTTGCTCA+TGG - chr5_3:26605606-26605625 Msa0806720:intron 40.0%
TGCTCATGGCTTAATCAAAG+AGG - chr5_3:26605620-26605639 Msa0806720:intron 40.0%
GCTCATGGCTTAATCAAAGA+GGG - chr5_3:26605621-26605640 Msa0806720:intron 40.0%
TCACACTGTTATTACATCGC+TGG - chr5_3:26606071-26606090 Msa0806720:intron 40.0%
GACGTTTGATTCAGATCAGA+CGG - chr5_3:26606093-26606112 Msa0806720:intron 40.0%
!! AGTGCTTGGTTTTTATCCGA+CGG - chr5_3:26606177-26606196 Msa0806720:CDS 40.0%
ACATTGGGGTTTGCATTTGT+AGG - chr5_3:26606405-26606424 Msa0806720:CDS 40.0%
TGTCGGAAACATGATTTCTG+AGG - chr5_3:26606483-26606502 Msa0806720:intron 40.0%
! TCTGAGGCTTTGCATAAAGT+AGG - chr5_3:26606499-26606518 Msa0806720:intron 40.0%
AGTAGATCTTCACAACTGCA+AGG - chr5_3:26606648-26606667 Msa0806720:intron 40.0%
CCCTCTGCAACTATCAAAAT+TGG + chr5_3:26606830-26606849 None:intergenic 40.0%
! TAAACTTAGGGGTGTGCTTA+AGG - chr5_3:26606886-26606905 Msa0806720:intron 40.0%
GCTTAAGGTTGCTGCTATTA+AGG - chr5_3:26606901-26606920 Msa0806720:intron 40.0%
!! CTATTAAGGCTCCTGCTTTT+GGG - chr5_3:26606915-26606934 Msa0806720:intron 40.0%
!! TATTAAGGCTCCTGCTTTTG+GGG - chr5_3:26606916-26606935 Msa0806720:intron 40.0%
GAAGATATTGCCATCTTGAC+TGG - chr5_3:26606959-26606978 Msa0806720:intron 40.0%
TCTTATACCTCCAGTCAAGA+TGG + chr5_3:26606972-26606991 None:intergenic 40.0%
!! GCAGTGATGTTTTTGCATAG+TGG + chr5_3:26607250-26607269 None:intergenic 40.0%
! TGGATTTTCACAGGTCGAAA+GGG + chr5_3:26607613-26607632 None:intergenic 40.0%
! TTGGATTTTCACAGGTCGAA+AGG + chr5_3:26607614-26607633 None:intergenic 40.0%
GTGCATTCTTGGAACTTATC+AGG - chr5_3:26607792-26607811 Msa0806720:CDS 40.0%
! GTTTTCTCTGTACCTCAACA+AGG + chr5_3:26607977-26607996 None:intergenic 40.0%
AGGATAGCAAGATTATCAGG+GGG - chr5_3:26608133-26608152 Msa0806720:intron 40.0%
AGATGCCTTAAATGCAACCA+AGG - chr5_3:26608337-26608356 Msa0806720:CDS 40.0%
!! CAGAGAAAAAGGAAGTACCT+TGG + chr5_3:26608357-26608376 None:intergenic 40.0%
! ATTGAGGAAGGTGTAGTAGT+TGG - chr5_3:26608445-26608464 Msa0806720:intron 40.0%
! CCTTCTTGGATAGTCTTAGA+AGG + chr5_3:26608483-26608502 None:intergenic 40.0%
!! CCTTCTAAGACTATCCAAGA+AGG - chr5_3:26608480-26608499 Msa0806720:intron 40.0%
! TCTAAGACTATCCAAGAAGG+TGG - chr5_3:26608483-26608502 Msa0806720:intron 40.0%
TTTATGAGTGAGTGCGTATG+TGG + chr5_3:26608626-26608645 None:intergenic 40.0%
CTTCAGATTGAAGACGTGTT+TGG + chr5_3:26608733-26608752 None:intergenic 40.0%
! GACAACATTGCCATTTACAC+CGG + chr5_3:26608913-26608932 None:intergenic 40.0%
TTGTCATAGATAAGGTCCTG+AGG - chr5_3:26608928-26608947 Msa0806720:intron 40.0%
AACAGTTTCTCAAGAACCTC+AGG + chr5_3:26608947-26608966 None:intergenic 40.0%
CTGTTATGAGGATCTCATGA+AGG - chr5_3:26609105-26609124 Msa0806720:CDS 40.0%
TCTCATGAAGGCTAGAATCA+TGG - chr5_3:26609117-26609136 Msa0806720:CDS 40.0%
GAAAATTGGTGCAGGTTGTT+AGG - chr5_3:26609249-26609268 Msa0806720:intron 40.0%
!! ATGGTTGTTCTAGTTCCATG+CGG + chr5_3:26609340-26609359 None:intergenic 40.0%
ATGGGCTTTCTACGTTGTAA+TGG + chr5_3:26609359-26609378 None:intergenic 40.0%
ATTACAACGTAGAAAGCCCA+TGG - chr5_3:26609358-26609377 Msa0806720:CDS 40.0%
GAATTAGTCATGGGCATTCT+AGG + chr5_3:26609410-26609429 None:intergenic 40.0%
AGAATGCCCATGACTAATTC+AGG - chr5_3:26609410-26609429 Msa0806720:CDS 40.0%
!! AGGTGATGGAGAAGATGTCA+TGG + chr5_3:26604886-26604905 None:intergenic 45.0%
! TTTTTCTTTGCGGTGTAGGC+AGG - chr5_3:26605131-26605150 Msa0806720:intron 45.0%
! TTTTCTTTGCGGTGTAGGCA+GGG - chr5_3:26605132-26605151 Msa0806720:intron 45.0%
!! AGAGCTGCTTGGTGTTACAT+TGG - chr5_3:26605169-26605188 Msa0806720:CDS 45.0%
!! GAGCTGCTTGGTGTTACATT+GGG - chr5_3:26605170-26605189 Msa0806720:CDS 45.0%
!! TGGTGTTACATTGGGTCCTA+AGG - chr5_3:26605178-26605197 Msa0806720:CDS 45.0%
! GGTGTTACATTGGGTCCTAA+GGG - chr5_3:26605179-26605198 Msa0806720:CDS 45.0%
CCATCATTTACTATCCTGGG+TGG + chr5_3:26605236-26605255 None:intergenic 45.0%
CCACCCAGGATAGTAAATGA+TGG - chr5_3:26605233-26605252 Msa0806720:CDS 45.0%
CTCTTGTAGGTTATTGCAGC+TGG - chr5_3:26605931-26605950 Msa0806720:intron 45.0%
AATCCTGTCCAAATTGCTCG+TGG - chr5_3:26605958-26605977 Msa0806720:CDS 45.0%
ATCCTGTCCAAATTGCTCGT+GGG - chr5_3:26605959-26605978 Msa0806720:CDS 45.0%
TCTCAATCCCACGAGCAATT+TGG + chr5_3:26605969-26605988 None:intergenic 45.0%
GGGTTTGCATTTGTAGGTTG+AGG - chr5_3:26606411-26606430 Msa0806720:CDS 45.0%
GCAGGGAACGATTATGTTGT+CGG - chr5_3:26606466-26606485 Msa0806720:CDS 45.0%
GAAGGAATGCAATTCGATCG+CGG - chr5_3:26606583-26606602 Msa0806720:intron 45.0%
! GCTATTAAGGCTCCTGCTTT+TGG - chr5_3:26606914-26606933 Msa0806720:intron 45.0%
GATATTGCCATCTTGACTGG+AGG - chr5_3:26606962-26606981 Msa0806720:intron 45.0%
! GGTTCTCTCATCGATTGAAG+TGG + chr5_3:26607548-26607567 None:intergenic 45.0%
GGTCGAAAGGGTTTGATTCA+TGG + chr5_3:26607601-26607620 None:intergenic 45.0%
CACCTTAGAAAAAGCCAGCA+CGG - chr5_3:26607842-26607861 Msa0806720:CDS 45.0%
!!! ATCCGTGCTGGCTTTTTCTA+AGG + chr5_3:26607847-26607866 None:intergenic 45.0%
TCTACCCTACTAGTCACTGA+TGG - chr5_3:26607906-26607925 Msa0806720:intron 45.0%
CTACCCTACTAGTCACTGAT+GGG - chr5_3:26607907-26607926 Msa0806720:intron 45.0%
ACTCCCATCAGTGACTAGTA+GGG + chr5_3:26607913-26607932 None:intergenic 45.0%
TACTCCCATCAGTGACTAGT+AGG + chr5_3:26607914-26607933 None:intergenic 45.0%
AACATTGCAGGCAGCAATTG+AGG - chr5_3:26608429-26608448 Msa0806720:intron 45.0%
! CCTTTTGCTCTTCATTGTCC+AGG + chr5_3:26608525-26608544 None:intergenic 45.0%
CCTGGACAATGAAGAGCAAA+AGG - chr5_3:26608522-26608541 Msa0806720:intron 45.0%
GCGAAAAATGCCGGTGTAAA+TGG - chr5_3:26608900-26608919 Msa0806720:intron 45.0%
TAGCATATCTTCTGTCGTGC+AGG - chr5_3:26609036-26609055 Msa0806720:intron 45.0%
TGCTGCTAGAGACTGTTATG+AGG - chr5_3:26609093-26609112 Msa0806720:CDS 45.0%
TATAGAGCATGCAGCTTCTG+TGG - chr5_3:26609277-26609296 Msa0806720:CDS 45.0%
!! AATTATTAAAAATAAACTTA+GGG - chr5_3:26606874-26606893 Msa0806720:intron 5.0%
TTTCTTTGCGGTGTAGGCAG+GGG - chr5_3:26605133-26605152 Msa0806720:intron 50.0%
CACTTGTACCGTTGCTTAGG+TGG - chr5_3:26605442-26605461 Msa0806720:CDS 50.0%
ATCCCACGAGCAATTTGGAC+AGG + chr5_3:26605964-26605983 None:intergenic 50.0%
GAGTACACATCATGGACCGT+CGG + chr5_3:26606196-26606215 None:intergenic 50.0%
GGTCCATGATGTGTACTCGT+GGG - chr5_3:26606198-26606217 Msa0806720:CDS 50.0%
GTCCATGATGTGTACTCGTG+GGG - chr5_3:26606199-26606218 Msa0806720:CDS 50.0%
TGTACTCGTGGGGTGAATGT+GGG - chr5_3:26606209-26606228 Msa0806720:intron 50.0%
TATGTTGCAGAAGTCAGCGC+AGG - chr5_3:26606448-26606467 Msa0806720:CDS 50.0%
ATGTTGCAGAAGTCAGCGCA+GGG - chr5_3:26606449-26606468 Msa0806720:CDS 50.0%
CTTCGATCGGTGACGAAGTA+GGG + chr5_3:26606619-26606638 None:intergenic 50.0%
TCTTCGATCGGTGACGAAGT+AGG + chr5_3:26606620-26606639 None:intergenic 50.0%
AGTTGCAGAGGGAATTGAGC+AGG - chr5_3:26606838-26606857 Msa0806720:intron 50.0%
! GGAGGTGGTTGGATTTTCAC+AGG + chr5_3:26607622-26607641 None:intergenic 50.0%
AAAATCCAACCACCTCCAGC+TGG - chr5_3:26607625-26607644 Msa0806720:intron 50.0%
ACTGGTAGGATGAAGCCAGA+GGG + chr5_3:26607660-26607679 None:intergenic 50.0%
TGGCTTCATCCTACCAGTGT+CGG - chr5_3:26607662-26607681 Msa0806720:CDS 50.0%
!! AGGGGGCATTGCCATTCTTA+AGG - chr5_3:26608150-26608169 Msa0806720:intron 50.0%
TTGCAGGCAGCAATTGAGGA+AGG - chr5_3:26608433-26608452 Msa0806720:intron 50.0%
! GAGGAAGGTGTAGTAGTTGG+TGG - chr5_3:26608448-26608467 Msa0806720:intron 50.0%
!! GAAGGTGTAGTAGTTGGTGG+TGG - chr5_3:26608451-26608470 Msa0806720:intron 50.0%
TGCTGTTGTGATTGACCGCA+TGG - chr5_3:26609322-26609341 Msa0806720:CDS 50.0%
GGCTTTCTAGGCATAGCCAT+GGG + chr5_3:26609377-26609396 None:intergenic 50.0%
GGCATTCTAGGCATAGCCAT+GGG + chr5_3:26609398-26609417 None:intergenic 50.0%
GACTTAGTGGCAGAGCTGCT+TGG - chr5_3:26605158-26605177 Msa0806720:intron 55.0%
ACAACAAGTATGGGCCACCC+AGG - chr5_3:26605219-26605238 Msa0806720:CDS 55.0%
CGGTCCATGATGTGTACTCG+TGG - chr5_3:26606197-26606216 Msa0806720:CDS 55.0%
CACCCCACGAGTACACATCA+TGG + chr5_3:26606204-26606223 None:intergenic 55.0%
GTGTACTCGTGGGGTGAATG+TGG - chr5_3:26606208-26606227 Msa0806720:intron 55.0%
CTCTTGCGTTCCCCAAAAGC+AGG + chr5_3:26606929-26606948 None:intergenic 55.0%
GCATGGACGAGACAAGTGTG+AGG - chr5_3:26607408-26607427 Msa0806720:CDS 55.0%
CACTGGTAGGATGAAGCCAG+AGG + chr5_3:26607661-26607680 None:intergenic 55.0%
GGCTTCATCCTACCAGTGTC+GGG - chr5_3:26607663-26607682 Msa0806720:CDS 55.0%
GCTTCATCCTACCAGTGTCG+GGG - chr5_3:26607664-26607683 Msa0806720:CDS 55.0%
AAAGCCAGCACGGATGTGCT+TGG - chr5_3:26607852-26607871 Msa0806720:CDS 55.0%
AGAACCAAGCACATCCGTGC+TGG + chr5_3:26607859-26607878 None:intergenic 55.0%
GGGCTTTCTAGGCATAGCCA+TGG + chr5_3:26609378-26609397 None:intergenic 55.0%
GGCTATGCCTAGAAAGCCCA+TGG - chr5_3:26609379-26609398 Msa0806720:CDS 55.0%
GGCATAGCCATGGGCTTTCT+AGG + chr5_3:26609368-26609387 None:intergenic 55.0%
GGGCATTCTAGGCATAGCCA+TGG + chr5_3:26609399-26609418 None:intergenic 55.0%
! GTAGGCAGGGGTGGACTTAG+TGG - chr5_3:26605145-26605164 Msa0806720:intron 60.0%
AACCACCTCCAGCTGGACCA+GGG - chr5_3:26607632-26607651 Msa0806720:intron 60.0%
CTTTGCGGTGTAGGCAGGGG+TGG - chr5_3:26605136-26605155 Msa0806720:intron 65.0%
CTGGTCCAGCTGGAGGTGGT+TGG + chr5_3:26607633-26607652 None:intergenic 65.0%
CAACCACCTCCAGCTGGACC+AGG - chr5_3:26607631-26607650 Msa0806720:intron 65.0%
ACCACCTCCAGCTGGACCAG+GGG - chr5_3:26607633-26607652 Msa0806720:intron 65.0%
GATGAAGCCAGAGGGTCCCC+TGG + chr5_3:26607652-26607671 None:intergenic 65.0%
TCCCCTGGTCCAGCTGGAGG+TGG + chr5_3:26607637-26607656 None:intergenic 70.0%
AGAGGGTCCCCTGGTCCAGC+TGG + chr5_3:26607643-26607662 None:intergenic 70.0%
AGCTGGACCAGGGGACCCTC+TGG - chr5_3:26607642-26607661 Msa0806720:intron 70.0%
TCGGTGGCCCCGACACTGGT+AGG + chr5_3:26607674-26607693 None:intergenic 70.0%
! TCACTCGGTGGCCCCGACAC+TGG + chr5_3:26607678-26607697 None:intergenic 70.0%
GGGTCCCCTGGTCCAGCTGG+AGG + chr5_3:26607640-26607659 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 26604777 26609538 26604777 ID=Msa0806720;Name=Msa0806720
chr5_3 mRNA 26604777 26609538 26604777 ID=Msa0806720-mRNA-1;Parent=Msa0806720;Name=Msa0806720-mRNA-1;_AED=0.08;_eAED=0.08;_QI=108|0.16|0.15|1|1|1|13|0|627
chr5_3 exon 26604777 26605052 26604777 ID=Msa0806720-mRNA-1:exon:9648;Parent=Msa0806720-mRNA-1
chr5_3 exon 26605165 26605257 26605165 ID=Msa0806720-mRNA-1:exon:9647;Parent=Msa0806720-mRNA-1
chr5_3 exon 26605374 26605466 26605374 ID=Msa0806720-mRNA-1:exon:9646;Parent=Msa0806720-mRNA-1
chr5_3 exon 26605772 26605876 26605772 ID=Msa0806720-mRNA-1:exon:9645;Parent=Msa0806720-mRNA-1
chr5_3 exon 26605957 26606028 26605957 ID=Msa0806720-mRNA-1:exon:9644;Parent=Msa0806720-mRNA-1
chr5_3 exon 26606144 26606221 26606144 ID=Msa0806720-mRNA-1:exon:9643;Parent=Msa0806720-mRNA-1
chr5_3 exon 26606332 26606501 26606332 ID=Msa0806720-mRNA-1:exon:9642;Parent=Msa0806720-mRNA-1
chr5_3 exon 26607332 26607566 26607332 ID=Msa0806720-mRNA-1:exon:9641;Parent=Msa0806720-mRNA-1
chr5_3 exon 26607646 26607888 26607646 ID=Msa0806720-mRNA-1:exon:9640;Parent=Msa0806720-mRNA-1
chr5_3 exon 26608280 26608375 26608280 ID=Msa0806720-mRNA-1:exon:9639;Parent=Msa0806720-mRNA-1
chr5_3 exon 26608665 26608802 26608665 ID=Msa0806720-mRNA-1:exon:9638;Parent=Msa0806720-mRNA-1
chr5_3 exon 26609041 26609166 26609041 ID=Msa0806720-mRNA-1:exon:9637;Parent=Msa0806720-mRNA-1
chr5_3 exon 26609272 26609538 26609272 ID=Msa0806720-mRNA-1:exon:9636;Parent=Msa0806720-mRNA-1
chr5_3 five_prime_UTR 26609431 26609538 26609431 ID=Msa0806720-mRNA-1:five_prime_utr;Parent=Msa0806720-mRNA-1
chr5_3 CDS 26609272 26609430 26609272 ID=Msa0806720-mRNA-1:cds;Parent=Msa0806720-mRNA-1
chr5_3 CDS 26609041 26609166 26609041 ID=Msa0806720-mRNA-1:cds;Parent=Msa0806720-mRNA-1
chr5_3 CDS 26608665 26608802 26608665 ID=Msa0806720-mRNA-1:cds;Parent=Msa0806720-mRNA-1
chr5_3 CDS 26608280 26608375 26608280 ID=Msa0806720-mRNA-1:cds;Parent=Msa0806720-mRNA-1
chr5_3 CDS 26607646 26607888 26607646 ID=Msa0806720-mRNA-1:cds;Parent=Msa0806720-mRNA-1
chr5_3 CDS 26607332 26607566 26607332 ID=Msa0806720-mRNA-1:cds;Parent=Msa0806720-mRNA-1
chr5_3 CDS 26606332 26606501 26606332 ID=Msa0806720-mRNA-1:cds;Parent=Msa0806720-mRNA-1
chr5_3 CDS 26606144 26606221 26606144 ID=Msa0806720-mRNA-1:cds;Parent=Msa0806720-mRNA-1
chr5_3 CDS 26605957 26606028 26605957 ID=Msa0806720-mRNA-1:cds;Parent=Msa0806720-mRNA-1
chr5_3 CDS 26605772 26605876 26605772 ID=Msa0806720-mRNA-1:cds;Parent=Msa0806720-mRNA-1
chr5_3 CDS 26605374 26605466 26605374 ID=Msa0806720-mRNA-1:cds;Parent=Msa0806720-mRNA-1
chr5_3 CDS 26605165 26605257 26605165 ID=Msa0806720-mRNA-1:cds;Parent=Msa0806720-mRNA-1
chr5_3 CDS 26604777 26605052 26604777 ID=Msa0806720-mRNA-1:cds;Parent=Msa0806720-mRNA-1
Gene Sequence

>Msa0806720

ATGACATCTTCTCCATCACCTATATCTGCTACATTATCATTTGCTAATCCATCATCAATTCCAAAACACCGAAATTCACCTTCTTTTTTATTAAACACAAAAGCTATGTCCAAAGATCTTTATTTCAACCATGATGGTTCAACCACAAAGAAGCTTCTTGCAGGGGTGGACTTAGTGGCAGAGCTGCTTGGTGTTACATTGGGTCCTAAGGGAAGAAATGTTGTGTTGCACAACAAGTATGGGCCACCCAGGATAGTAAATGATGGAGAAACTGTTCTCAAAGAGATTGAATTGGAAGATCCATTGGAGAATGTTGGGGTTAAATTGGTGAGACAAGCTGGTGCAAAAACCAATATCTTAGTTGGTGATGGCTCAACTACATCTGTTGTTCTTGCTCATGGCTTAATCAAAGAGGGAATGAAGGTTATTGCAGCTGGAATGAATCCTGTCCAAATTGCTCGTGGGATTGAGAAAACAGCAATAGCACTTGTTACTGAACTTAGTTTGATGTCTAGAGAAGTTGAGGATCATGAACTTAAATATGTTGCAGAAGTCAGCGCAGGGAACGATTATGTTGTCGGAAACATGATTTCTGAGGCTTTGCATAAAGTAGGAAGAAAAGGAGTAGTGACAATTGAAAAAGGCAAAAGCATTGAGAATAGTCTAGAGATTGTAGAAGGAATGCAATTCGATCGCGGTTATCTGTCTCCCTACTTCGTCACCGATCGAAGAAAGATGACAGTAGATCTTCACAACTGCAAGTTGCTTTTAGTTGACAAAAAGATCACAAATCCAAAAGAGCTTCTGAACATATTGAATAGTGCAGTGAAAGAGAAATTTCCAATTTTGATAGTTGCAGAGGGAATTGAGCAGGATGCTCTTGCTCCAATTATTAAAAATAAACTTAGGGGTGTGCTTAAGGTTGCTGCTATTAAGGCTCCTGCTTTTGGGGAACGCAAGAGTCACTACTTAGAAGATATTGCCATCTTGACTGGAGGTACTGTAATAAGAGAAGATATGGGTTTCACCTTAGAAAAAGCCAGCACGGATGTGCTTGGTTCTGCTGCCAAAGTTGTCATTACAAAAGATTCTACCCTACTAGTCACTGATGGGAGTACTAGAGAAGCAATTGAAAAGAGGGTTAATCAAATTAAGATCCTTGTTGAGAATACTGAAGAAAATTTTCAAAAGAAGATATTGAATGAAAGGATAGCAAGATTATCAGGGGGCATTGCCATTCTTAAGGTAGGAGCACAAACACAAGTAGAGTTGAAGGATAAACAATTAAGAATAGAAGATGCCTTAAATGCAACCAAGGCAGCAATTGAGGAAGGTGTAGTAGTTGGTGGTGGCTGTAGCCTTCTAAGACTATCCAAGAAGGTGGATAGCATAAAAATTCTCCTGGACAATGAAGAGCAAAAGATTGGAGCTGAAATCTTCAAAAGAGCTTTGAGCTATCCTACTAAAATGATAGCGAAAAATGCCGGTGTAAATGGCAATGTTGTCATAGATAAGGTTTTAGCAGATGATAACATGAATTTTGGTTACAATGCTGCTAGAGACTGTTATGAGGATCTCATGAAGGCTAGAATCATGGATCCAACAAAGGTTGTTAGGTGTTGTATAGAGCATGCAGCTTCTGTGGCAAAGACATTTCTAACATCAAATGCTGTTGTGATTGACCGCATGGAACTAGAACAACCATTACAACGTAGAAAGCCCATGGCTATGCCTAGAAAGCCCATGGCTATGCCTAGAATGCCCATGACTAATTCAGGTATTAGAGTGGGTAGTCATTTAAAAAATGTTTTATATATTACAATTGGCGCTAAAATAACAAGACGACGACAAAACAACAACAAAAAATGCCTTTTATATTACTAG

Protein sequence

>Msa0806720

MTSSPSPISATLSFANPSSIPKHRNSPSFLLNTKAMSKDLYFNHDGSTTKKLLAGVDLVAELLGVTLGPKGRNVVLHNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNILVGDGSTTSVVLAHGLIKEGMKVIAAGMNPVQIARGIEKTAIALVTELSLMSREVEDHELKYVAEVSAGNDYVVGNMISEALHKVGRKGVVTIEKGKSIENSLEIVEGMQFDRGYLSPYFVTDRRKMTVDLHNCKLLLVDKKITNPKELLNILNSAVKEKFPILIVAEGIEQDALAPIIKNKLRGVLKVAAIKAPAFGERKSHYLEDIAILTGGTVIREDMGFTLEKASTDVLGSAAKVVITKDSTLLVTDGSTREAIEKRVNQIKILVENTEENFQKKILNERIARLSGGIAILKVGAQTQVELKDKQLRIEDALNATKAAIEEGVVVGGGCSLLRLSKKVDSIKILLDNEEQKIGAEIFKRALSYPTKMIAKNAGVNGNVVIDKVLADDNMNFGYNAARDCYEDLMKARIMDPTKVVRCCIEHAASVAKTFLTSNAVVIDRMELEQPLQRRKPMAMPRKPMAMPRMPMTNSGIRVGSHLKNVLYITIGAKITRRRQNNNKKCLLYY*