Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083770 | GAU33476.1 | 50.690 | 290 | 95 | 5 | 1 | 290 | 98 | 339 | 5.33e-85 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083770 | A0A2Z6MLR9 | 50.690 | 290 | 95 | 5 | 1 | 290 | 98 | 339 | 2.55e-85 | 271 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0083770 | Msa0114060 | 0.807204 | 5.665514e-50 | -8.615850e-47 |
| Msa0083770 | Msa0220580 | 0.800651 | 1.304091e-48 | -8.615850e-47 |
| Msa0083770 | Msa0485780 | 0.896692 | 2.890519e-76 | -8.615850e-47 |
| Msa0083770 | Msa0652940 | 0.801732 | 7.838106e-49 | -8.615850e-47 |
| Msa0083770 | Msa0813400 | 0.883249 | 5.265734e-71 | -8.615850e-47 |
| Msa0083770 | Msa1082500 | 0.810548 | 1.091094e-50 | -8.615850e-47 |
| Msa0083770 | Msa1233890 | 0.802116 | 6.533844e-49 | -8.615850e-47 |
| Msa0083770 | Msa1411020 | 0.802893 | 4.520192e-49 | -8.615850e-47 |
| Msa0083770 | Msa1420490 | 0.813065 | 3.090885e-51 | -8.615850e-47 |
| Msa0083770 | Msa1423390 | 0.811130 | 8.165247e-51 | -8.615850e-47 |
| Msa0083770 | Msa1434350 | 0.802596 | 5.205912e-49 | -8.615850e-47 |
| Msa0083770 | Msa1439320 | 0.807791 | 4.252424e-50 | -8.615850e-47 |
| Msa0083770 | Msa1440370 | 0.812798 | 3.536312e-51 | -8.615850e-47 |
| Msa0083770 | Msa1440810 | 0.815169 | 1.060927e-51 | -8.615850e-47 |
| Msa0083770 | Msa1460050 | 0.803795 | 2.940088e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083770 | MtrunA17_Chr4g0002051 | 46.099 | 282 | 145 | 2 | 67 | 346 | 40 | 316 | 1.98e-80 | 248 |
| Msa0083770 | MtrunA17_Chr8g0381471 | 48.837 | 172 | 86 | 1 | 177 | 346 | 1 | 172 | 7.70e-51 | 167 |
| Msa0083770 | MtrunA17_Chr2g0287671 | 30.769 | 286 | 153 | 11 | 75 | 326 | 135 | 409 | 3.36e-28 | 114 |
| Msa0083770 | MtrunA17_Chr8g0361701 | 32.857 | 140 | 86 | 3 | 165 | 303 | 110 | 242 | 7.36e-18 | 82.0 |
| Msa0083770 | MtrunA17_Chr3g0086461 | 22.511 | 231 | 159 | 7 | 134 | 355 | 44 | 263 | 6.92e-12 | 65.1 |
| Msa0083770 | MtrunA17_Chr8g0349191 | 31.818 | 110 | 72 | 2 | 248 | 354 | 1 | 110 | 9.34e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTGGCCATTTACATATT+TGG | 0.165632 | 1_2:+62896038 | Msa0083770:CDS |
| CCTTGACGTCCCAAACCTTT+TGG | 0.174160 | 1_2:-62897023 | None:intergenic |
| TCATCGCTGCTTCTAATTAT+TGG | 0.189813 | 1_2:+62896183 | Msa0083770:CDS |
| AACTGTTTCATTTGCCAAAA+TGG | 0.193914 | 1_2:-62896563 | None:intergenic |
| CATAAGCAAGATTTCATTAA+AGG | 0.220107 | 1_2:+62897381 | Msa0083770:CDS |
| TTTAATTCCATTCTTCTCTT+TGG | 0.242193 | 1_2:-62896002 | None:intergenic |
| TTTGATGTTGGCAAAGTCTT+TGG | 0.263575 | 1_2:+62897356 | Msa0083770:CDS |
| AAACGAAGAAGAGTGTAATT+TGG | 0.264894 | 1_2:+62896022 | Msa0083770:CDS |
| TGTCGTGGAATTCACCATTT+TGG | 0.264921 | 1_2:+62896549 | Msa0083770:CDS |
| GTTGTTTCAGGCTATGTTTA+TGG | 0.272519 | 1_2:+62896920 | Msa0083770:intron |
| TTTGTTTCAGGTAATAGATT+TGG | 0.274663 | 1_2:+62896360 | Msa0083770:intron |
| CATCGCTGCTTCTAATTATT+GGG | 0.286684 | 1_2:+62896184 | Msa0083770:CDS |
| TAGGAATGATTGTGCGGTTT+GGG | 0.307093 | 1_2:+62897129 | Msa0083770:intron |
| TGGACATCCAAATATGTAAA+TGG | 0.307101 | 1_2:-62896045 | None:intergenic |
| TGTCCACCTAATGAAGAAAT+TGG | 0.319212 | 1_2:+62896062 | Msa0083770:CDS |
| AATAGTCACCCCAAAAGGTT+TGG | 0.336042 | 1_2:+62897013 | Msa0083770:CDS |
| TCATCTACACTGGTTCCTTT+TGG | 0.345121 | 1_2:+62896731 | Msa0083770:CDS |
| AACTTGCCAATTTCTTCATT+AGG | 0.349344 | 1_2:-62896068 | None:intergenic |
| GTGCGGTTTGGGTAATTAAC+TGG | 0.355704 | 1_2:+62897140 | Msa0083770:CDS |
| GTTTCTGCCAACAACTTTAA+CGG | 0.369175 | 1_2:+62896438 | Msa0083770:CDS |
| GTTTATGGAGGAGTTCTTGA+TGG | 0.373775 | 1_2:+62896935 | Msa0083770:CDS |
| CGTGAAGCACCGACGAACTT+TGG | 0.382229 | 1_2:-62896797 | None:intergenic |
| TTGTCATATGAAACTCTTGA+TGG | 0.382802 | 1_2:-62895634 | None:intergenic |
| AAATTTACCGTTAAAGTTGT+TGG | 0.410827 | 1_2:-62896445 | None:intergenic |
| TTAGGAATGATTGTGCGGTT+TGG | 0.432957 | 1_2:+62897128 | Msa0083770:intron |
| AAACCCAACAAATTCGTTAC+GGG | 0.437895 | 1_2:+62896242 | Msa0083770:CDS |
| CAGTGTAGATGATCATATAT+TGG | 0.446763 | 1_2:-62896720 | None:intergenic |
| TTTAAAATAGTCACCCCAAA+AGG | 0.463204 | 1_2:+62897008 | Msa0083770:CDS |
| ATCTCCCGTAACGAATTTGT+TGG | 0.479707 | 1_2:-62896246 | None:intergenic |
| CAAAGTTCGTCGGTGCTTCA+CGG | 0.486634 | 1_2:+62896798 | Msa0083770:CDS |
| TCTCCCGTAACGAATTTGTT+GGG | 0.488863 | 1_2:-62896245 | None:intergenic |
| TTGATGGATCCATCTTTCCA+TGG | 0.492954 | 1_2:+62896951 | Msa0083770:CDS |
| GAAACCCAACAAATTCGTTA+CGG | 0.493062 | 1_2:+62896241 | Msa0083770:CDS |
| ATAGTCACCCCAAAAGGTTT+GGG | 0.495339 | 1_2:+62897014 | Msa0083770:CDS |
| GACATCAGTAGAAGAAGCGA+AGG | 0.502479 | 1_2:+62895573 | Msa0083770:CDS |
| AAATGCGTCAACCTAAAACT+TGG | 0.506791 | 1_2:+62896416 | Msa0083770:CDS |
| GCTAACTTACGATGCAAGAA+AGG | 0.510769 | 1_2:+62896393 | Msa0083770:CDS |
| AAATCTCTCTTGTCGTTGAA+AGG | 0.515792 | 1_2:-62897336 | None:intergenic |
| GGTTTGGGACGTCAAGGGGA+TGG | 0.517176 | 1_2:+62897029 | Msa0083770:CDS |
| GTTTCAACCAAAGAGAAGAA+TGG | 0.517611 | 1_2:+62895995 | Msa0083770:CDS |
| GAATCAGTGCCATGGAAAGA+TGG | 0.518164 | 1_2:-62896960 | None:intergenic |
| TCACAAAGTCAATAACCAAA+AGG | 0.520836 | 1_2:-62896746 | None:intergenic |
| ATGATGCAACGTGGAGAGAA+TGG | 0.542299 | 1_2:+62897163 | Msa0083770:CDS |
| GTTTCAGGCTATGTTTATGG+AGG | 0.543768 | 1_2:+62896923 | Msa0083770:intron |
| TTGCCAATTTCTTCATTAGG+TGG | 0.544361 | 1_2:-62896065 | None:intergenic |
| CCAAAAGGTTTGGGACGTCA+AGG | 0.551652 | 1_2:+62897023 | Msa0083770:CDS |
| CAAAAGGTTTGGGACGTCAA+GGG | 0.561039 | 1_2:+62897024 | Msa0083770:CDS |
| GTTCGTCGGTGCTTCACGGA+AGG | 0.563242 | 1_2:+62896802 | Msa0083770:CDS |
| AAAAGGTTTGGGACGTCAAG+GGG | 0.574712 | 1_2:+62897025 | Msa0083770:CDS |
| CATTAAAGGATATGATTCAG+AGG | 0.576591 | 1_2:+62897395 | Msa0083770:CDS |
| TTTAGCGATATGTGCTGTCG+TGG | 0.583539 | 1_2:+62896534 | Msa0083770:intron |
| CGACAAGAGAGATTTGATGT+TGG | 0.587936 | 1_2:+62897344 | Msa0083770:CDS |
| CATAGTTTGAATCAGTGCCA+TGG | 0.596462 | 1_2:-62896968 | None:intergenic |
| ATTTATGGGAAATGCTGATG+TGG | 0.609698 | 1_2:+62896598 | Msa0083770:CDS |
| AAATGCTGATGTGGTTTCAA+AGG | 0.609916 | 1_2:+62896607 | Msa0083770:CDS |
| CAATATATGATCATCTACAC+TGG | 0.632704 | 1_2:+62896721 | Msa0083770:CDS |
| ATTGGGCGCATCATGTAACA+AGG | 0.646529 | 1_2:+62896201 | Msa0083770:CDS |
| TTATGCAAACAGGTGGACGA+AGG | 0.671354 | 1_2:+62897276 | Msa0083770:intron |
| TCATATGAAACTCTTGATGG+AGG | 0.686579 | 1_2:-62895631 | None:intergenic |
| CTTGATGGAGGTGTATCATG+TGG | 0.716906 | 1_2:-62895619 | None:intergenic |
| TGACTCGTACCAAAGTTCGT+CGG | 0.721179 | 1_2:+62896788 | Msa0083770:CDS |
| GGAGGTGTATCATGTGGACA+AGG | 0.723541 | 1_2:-62895613 | None:intergenic |
| ATTAACTGGATGATGCAACG+TGG | 0.737445 | 1_2:+62897154 | Msa0083770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGATTAAATTTTGTTTT+AGG | + | chr1_2:62897110-62897129 | Msa0083770:intron | 10.0% |
| !!! | TAATGATTAAATTTTGTTTT+AGG | + | chr1_2:62897110-62897129 | Msa0083770:intron | 10.0% |
| !!! | TATTTTTAATTGTTATAGGA+AGG | + | chr1_2:62896157-62896176 | Msa0083770:intron | 15.0% |
| !! | TCTAATTAAATAATACATAG+TGG | - | chr1_2:62897066-62897085 | None:intergenic | 15.0% |
| !!! | TATTTTTAATTGTTATAGGA+AGG | + | chr1_2:62896157-62896176 | Msa0083770:intron | 15.0% |
| !! | TCTAATTAAATAATACATAG+TGG | - | chr1_2:62897066-62897085 | None:intergenic | 15.0% |
| !!! | TTTTTGTTGAGAACAATTTT+CGG | - | chr1_2:62895756-62895775 | None:intergenic | 20.0% |
| !! | AAATTGTTCTCAACAAAAAA+AGG | + | chr1_2:62895757-62895776 | Msa0083770:CDS | 20.0% |
| !!! | ATTTTTTTTTCTTTTCTACG+TGG | - | chr1_2:62895835-62895854 | None:intergenic | 20.0% |
| !! | TTGTTAATATCTTTATACAG+TGG | + | chr1_2:62895961-62895980 | Msa0083770:intron | 20.0% |
| !! | ACTTATTAAGCTTATTTGTA+TGG | + | chr1_2:62896314-62896333 | Msa0083770:intron | 20.0% |
| !! | CTTATTAAGCTTATTTGTAT+GGG | + | chr1_2:62896315-62896334 | Msa0083770:intron | 20.0% |
| !! | TTATTAAGCTTATTTGTATG+GGG | + | chr1_2:62896316-62896335 | Msa0083770:intron | 20.0% |
| !! | TTCTACCAAAAAGAATTTAT+GGG | + | chr1_2:62896584-62896603 | Msa0083770:CDS | 20.0% |
| !! | GATATCAAGTATCAAAAAAT+TGG | + | chr1_2:62896824-62896843 | Msa0083770:CDS | 20.0% |
| !!! | TGCAATTTCATTACATTTTA+TGG | + | chr1_2:62897226-62897245 | Msa0083770:intron | 20.0% |
| !!! | TTTTTGTTGAGAACAATTTT+CGG | - | chr1_2:62895756-62895775 | None:intergenic | 20.0% |
| !! | AAATTGTTCTCAACAAAAAA+AGG | + | chr1_2:62895757-62895776 | Msa0083770:CDS | 20.0% |
| !!! | ATTTTTTTTTCTTTTCTACG+TGG | - | chr1_2:62895835-62895854 | None:intergenic | 20.0% |
| !! | TTGTTAATATCTTTATACAG+TGG | + | chr1_2:62895961-62895980 | Msa0083770:intron | 20.0% |
| !! | ACTTATTAAGCTTATTTGTA+TGG | + | chr1_2:62896314-62896333 | Msa0083770:intron | 20.0% |
| !! | CTTATTAAGCTTATTTGTAT+GGG | + | chr1_2:62896315-62896334 | Msa0083770:intron | 20.0% |
| !! | TTATTAAGCTTATTTGTATG+GGG | + | chr1_2:62896316-62896335 | Msa0083770:intron | 20.0% |
| !! | TTCTACCAAAAAGAATTTAT+GGG | + | chr1_2:62896584-62896603 | Msa0083770:CDS | 20.0% |
| !! | GATATCAAGTATCAAAAAAT+TGG | + | chr1_2:62896824-62896843 | Msa0083770:CDS | 20.0% |
| !!! | TGCAATTTCATTACATTTTA+TGG | + | chr1_2:62897226-62897245 | Msa0083770:intron | 20.0% |
| ! | AGTTTCATATGACAAAAAAG+TGG | + | chr1_2:62895642-62895661 | Msa0083770:CDS | 25.0% |
| ! | TTTAATTCCATTCTTCTCTT+TGG | - | chr1_2:62896005-62896024 | None:intergenic | 25.0% |
| ! | AATTTGGCCATTTACATATT+TGG | + | chr1_2:62896038-62896057 | Msa0083770:CDS | 25.0% |
| !! | TTTGTTTCAGGTAATAGATT+TGG | + | chr1_2:62896360-62896379 | Msa0083770:intron | 25.0% |
| ! | AAATTTACCGTTAAAGTTGT+TGG | - | chr1_2:62896448-62896467 | None:intergenic | 25.0% |
| ! | GTTCTACCAAAAAGAATTTA+TGG | + | chr1_2:62896583-62896602 | Msa0083770:CDS | 25.0% |
| !! | CATTTCCCATAAATTCTTTT+TGG | - | chr1_2:62896592-62896611 | None:intergenic | 25.0% |
| ! | CATAAGCAAGATTTCATTAA+AGG | + | chr1_2:62897381-62897400 | Msa0083770:CDS | 25.0% |
| ! | AGTTTCATATGACAAAAAAG+TGG | + | chr1_2:62895642-62895661 | Msa0083770:CDS | 25.0% |
| ! | TTTAATTCCATTCTTCTCTT+TGG | - | chr1_2:62896005-62896024 | None:intergenic | 25.0% |
| ! | AATTTGGCCATTTACATATT+TGG | + | chr1_2:62896038-62896057 | Msa0083770:CDS | 25.0% |
| !! | TTTGTTTCAGGTAATAGATT+TGG | + | chr1_2:62896360-62896379 | Msa0083770:intron | 25.0% |
| ! | AAATTTACCGTTAAAGTTGT+TGG | - | chr1_2:62896448-62896467 | None:intergenic | 25.0% |
| ! | GTTCTACCAAAAAGAATTTA+TGG | + | chr1_2:62896583-62896602 | Msa0083770:CDS | 25.0% |
| !! | CATTTCCCATAAATTCTTTT+TGG | - | chr1_2:62896592-62896611 | None:intergenic | 25.0% |
| ! | CATAAGCAAGATTTCATTAA+AGG | + | chr1_2:62897381-62897400 | Msa0083770:CDS | 25.0% |
| TTGTCATATGAAACTCTTGA+TGG | - | chr1_2:62895637-62895656 | None:intergenic | 30.0% | |
| TTCATATGACAAAAAAGTGG+AGG | + | chr1_2:62895645-62895664 | Msa0083770:CDS | 30.0% | |
| TTGTTCTCAACAAAAAAAGG+AGG | + | chr1_2:62895760-62895779 | Msa0083770:CDS | 30.0% | |
| AAAAATCCCTCCAAATTAGA+TGG | + | chr1_2:62895849-62895868 | Msa0083770:intron | 30.0% | |
| AATAGATGGTCCATCTAATT+TGG | - | chr1_2:62895862-62895881 | None:intergenic | 30.0% | |
| TAGTGGTATGTTAATACCTT+CGG | - | chr1_2:62895885-62895904 | None:intergenic | 30.0% | |
| ! | AAACGAAGAAGAGTGTAATT+TGG | + | chr1_2:62896022-62896041 | Msa0083770:CDS | 30.0% |
| TGGACATCCAAATATGTAAA+TGG | - | chr1_2:62896048-62896067 | None:intergenic | 30.0% | |
| AACTTGCCAATTTCTTCATT+AGG | - | chr1_2:62896071-62896090 | None:intergenic | 30.0% | |
| ! | TAAGAGATCAACTTTGTTTC+AGG | + | chr1_2:62896348-62896367 | Msa0083770:intron | 30.0% |
| AACTGTTTCATTTGCCAAAA+TGG | - | chr1_2:62896566-62896585 | None:intergenic | 30.0% | |
| CAGTGTAGATGATCATATAT+TGG | - | chr1_2:62896723-62896742 | None:intergenic | 30.0% | |
| CAATATATGATCATCTACAC+TGG | + | chr1_2:62896721-62896740 | Msa0083770:CDS | 30.0% | |
| TCACAAAGTCAATAACCAAA+AGG | - | chr1_2:62896749-62896768 | None:intergenic | 30.0% | |
| !! | CAAATTTCAAGTGTTGTTTC+AGG | + | chr1_2:62896908-62896927 | Msa0083770:intron | 30.0% |
| ! | TTTAAAATAGTCACCCCAAA+AGG | + | chr1_2:62897008-62897027 | Msa0083770:CDS | 30.0% |
| !!! | TTGTTTTAGGAATGATTGTG+CGG | + | chr1_2:62897123-62897142 | Msa0083770:intron | 30.0% |
| TTTAGCCAAATTATGCAAAC+AGG | + | chr1_2:62897266-62897285 | Msa0083770:intron | 30.0% | |
| TTGTCATATGAAACTCTTGA+TGG | - | chr1_2:62895637-62895656 | None:intergenic | 30.0% | |
| TTCATATGACAAAAAAGTGG+AGG | + | chr1_2:62895645-62895664 | Msa0083770:CDS | 30.0% | |
| TTGTTCTCAACAAAAAAAGG+AGG | + | chr1_2:62895760-62895779 | Msa0083770:CDS | 30.0% | |
| AAAAATCCCTCCAAATTAGA+TGG | + | chr1_2:62895849-62895868 | Msa0083770:intron | 30.0% | |
| AATAGATGGTCCATCTAATT+TGG | - | chr1_2:62895862-62895881 | None:intergenic | 30.0% | |
| TAGTGGTATGTTAATACCTT+CGG | - | chr1_2:62895885-62895904 | None:intergenic | 30.0% | |
| ! | AAACGAAGAAGAGTGTAATT+TGG | + | chr1_2:62896022-62896041 | Msa0083770:CDS | 30.0% |
| TGGACATCCAAATATGTAAA+TGG | - | chr1_2:62896048-62896067 | None:intergenic | 30.0% | |
| AACTTGCCAATTTCTTCATT+AGG | - | chr1_2:62896071-62896090 | None:intergenic | 30.0% | |
| ! | TAAGAGATCAACTTTGTTTC+AGG | + | chr1_2:62896348-62896367 | Msa0083770:intron | 30.0% |
| AACTGTTTCATTTGCCAAAA+TGG | - | chr1_2:62896566-62896585 | None:intergenic | 30.0% | |
| CAGTGTAGATGATCATATAT+TGG | - | chr1_2:62896723-62896742 | None:intergenic | 30.0% | |
| CAATATATGATCATCTACAC+TGG | + | chr1_2:62896721-62896740 | Msa0083770:CDS | 30.0% | |
| TCACAAAGTCAATAACCAAA+AGG | - | chr1_2:62896749-62896768 | None:intergenic | 30.0% | |
| !! | CAAATTTCAAGTGTTGTTTC+AGG | + | chr1_2:62896908-62896927 | Msa0083770:intron | 30.0% |
| ! | TTTAAAATAGTCACCCCAAA+AGG | + | chr1_2:62897008-62897027 | Msa0083770:CDS | 30.0% |
| !!! | TTGTTTTAGGAATGATTGTG+CGG | + | chr1_2:62897123-62897142 | Msa0083770:intron | 30.0% |
| TTTAGCCAAATTATGCAAAC+AGG | + | chr1_2:62897266-62897285 | Msa0083770:intron | 30.0% | |
| TCATATGAAACTCTTGATGG+AGG | - | chr1_2:62895634-62895653 | None:intergenic | 35.0% | |
| ! | AAAAAGTGATGACGATTGCA+AGG | + | chr1_2:62895708-62895727 | Msa0083770:CDS | 35.0% |
| ! | AATTTTCGGACACTTTGCTT+TGG | - | chr1_2:62895742-62895761 | None:intergenic | 35.0% |
| GTTAATACCTTCGGAATAGA+TGG | - | chr1_2:62895876-62895895 | None:intergenic | 35.0% | |
| CATACCACTATTGATGTCTT+CGG | + | chr1_2:62895895-62895914 | Msa0083770:intron | 35.0% | |
| GTTTCAACCAAAGAGAAGAA+TGG | + | chr1_2:62895995-62896014 | Msa0083770:CDS | 35.0% | |
| TGTCCACCTAATGAAGAAAT+TGG | + | chr1_2:62896062-62896081 | Msa0083770:CDS | 35.0% | |
| TTGCCAATTTCTTCATTAGG+TGG | - | chr1_2:62896068-62896087 | None:intergenic | 35.0% | |
| TCATCGCTGCTTCTAATTAT+TGG | + | chr1_2:62896183-62896202 | Msa0083770:CDS | 35.0% | |
| CATCGCTGCTTCTAATTATT+GGG | + | chr1_2:62896184-62896203 | Msa0083770:CDS | 35.0% | |
| GAAACCCAACAAATTCGTTA+CGG | + | chr1_2:62896241-62896260 | Msa0083770:CDS | 35.0% | |
| AAACCCAACAAATTCGTTAC+GGG | + | chr1_2:62896242-62896261 | Msa0083770:CDS | 35.0% | |
| AAATGCGTCAACCTAAAACT+TGG | + | chr1_2:62896416-62896435 | Msa0083770:CDS | 35.0% | |
| GTTTCTGCCAACAACTTTAA+CGG | + | chr1_2:62896438-62896457 | Msa0083770:CDS | 35.0% | |
| TAAACATGTATGAGCGCATA+GGG | - | chr1_2:62896503-62896522 | None:intergenic | 35.0% | |
| TTAAACATGTATGAGCGCAT+AGG | - | chr1_2:62896504-62896523 | None:intergenic | 35.0% | |
| AGCACATATCGCTAAATAGA+TGG | - | chr1_2:62896530-62896549 | None:intergenic | 35.0% | |
| ATTTATGGGAAATGCTGATG+TGG | + | chr1_2:62896598-62896617 | Msa0083770:CDS | 35.0% | |
| AAATGCTGATGTGGTTTCAA+AGG | + | chr1_2:62896607-62896626 | Msa0083770:CDS | 35.0% | |
| ! | GTTGTTTCAGGCTATGTTTA+TGG | + | chr1_2:62896920-62896939 | Msa0083770:intron | 35.0% |
| AAATCTCTCTTGTCGTTGAA+AGG | - | chr1_2:62897339-62897358 | None:intergenic | 35.0% | |
| TTTGATGTTGGCAAAGTCTT+TGG | + | chr1_2:62897356-62897375 | Msa0083770:CDS | 35.0% | |
| TCATATGAAACTCTTGATGG+AGG | - | chr1_2:62895634-62895653 | None:intergenic | 35.0% | |
| ! | AAAAAGTGATGACGATTGCA+AGG | + | chr1_2:62895708-62895727 | Msa0083770:CDS | 35.0% |
| ! | AATTTTCGGACACTTTGCTT+TGG | - | chr1_2:62895742-62895761 | None:intergenic | 35.0% |
| GTTAATACCTTCGGAATAGA+TGG | - | chr1_2:62895876-62895895 | None:intergenic | 35.0% | |
| CATACCACTATTGATGTCTT+CGG | + | chr1_2:62895895-62895914 | Msa0083770:intron | 35.0% | |
| GTTTCAACCAAAGAGAAGAA+TGG | + | chr1_2:62895995-62896014 | Msa0083770:CDS | 35.0% | |
| TGTCCACCTAATGAAGAAAT+TGG | + | chr1_2:62896062-62896081 | Msa0083770:CDS | 35.0% | |
| TTGCCAATTTCTTCATTAGG+TGG | - | chr1_2:62896068-62896087 | None:intergenic | 35.0% | |
| TCATCGCTGCTTCTAATTAT+TGG | + | chr1_2:62896183-62896202 | Msa0083770:CDS | 35.0% | |
| CATCGCTGCTTCTAATTATT+GGG | + | chr1_2:62896184-62896203 | Msa0083770:CDS | 35.0% | |
| GAAACCCAACAAATTCGTTA+CGG | + | chr1_2:62896241-62896260 | Msa0083770:CDS | 35.0% | |
| AAACCCAACAAATTCGTTAC+GGG | + | chr1_2:62896242-62896261 | Msa0083770:CDS | 35.0% | |
| AAATGCGTCAACCTAAAACT+TGG | + | chr1_2:62896416-62896435 | Msa0083770:CDS | 35.0% | |
| GTTTCTGCCAACAACTTTAA+CGG | + | chr1_2:62896438-62896457 | Msa0083770:CDS | 35.0% | |
| TAAACATGTATGAGCGCATA+GGG | - | chr1_2:62896503-62896522 | None:intergenic | 35.0% | |
| TTAAACATGTATGAGCGCAT+AGG | - | chr1_2:62896504-62896523 | None:intergenic | 35.0% | |
| AGCACATATCGCTAAATAGA+TGG | - | chr1_2:62896530-62896549 | None:intergenic | 35.0% | |
| ATTTATGGGAAATGCTGATG+TGG | + | chr1_2:62896598-62896617 | Msa0083770:CDS | 35.0% | |
| AAATGCTGATGTGGTTTCAA+AGG | + | chr1_2:62896607-62896626 | Msa0083770:CDS | 35.0% | |
| ! | GTTGTTTCAGGCTATGTTTA+TGG | + | chr1_2:62896920-62896939 | Msa0083770:intron | 35.0% |
| AAATCTCTCTTGTCGTTGAA+AGG | - | chr1_2:62897339-62897358 | None:intergenic | 35.0% | |
| TTTGATGTTGGCAAAGTCTT+TGG | + | chr1_2:62897356-62897375 | Msa0083770:CDS | 35.0% | |
| ! | GGTGTCTTGGTAACTACAAT+AGG | - | chr1_2:62895796-62895815 | None:intergenic | 40.0% |
| GATGGTCCATCTAATTTGGA+GGG | - | chr1_2:62895858-62895877 | None:intergenic | 40.0% | |
| AGATGGTCCATCTAATTTGG+AGG | - | chr1_2:62895859-62895878 | None:intergenic | 40.0% | |
| ACTACCGAAGACATCAATAG+TGG | - | chr1_2:62895902-62895921 | None:intergenic | 40.0% | |
| ! | TCTCCCGTAACGAATTTGTT+GGG | - | chr1_2:62896248-62896267 | None:intergenic | 40.0% |
| ATCTCCCGTAACGAATTTGT+TGG | - | chr1_2:62896249-62896268 | None:intergenic | 40.0% | |
| GCTAACTTACGATGCAAGAA+AGG | + | chr1_2:62896393-62896412 | Msa0083770:CDS | 40.0% | |
| ! | GTTGGCAGAAACCAAGTTTT+AGG | - | chr1_2:62896430-62896449 | None:intergenic | 40.0% |
| AAACATGTATGAGCGCATAG+GGG | - | chr1_2:62896502-62896521 | None:intergenic | 40.0% | |
| ! | TGTCGTGGAATTCACCATTT+TGG | + | chr1_2:62896549-62896568 | Msa0083770:CDS | 40.0% |
| !!! | TCATCTACACTGGTTCCTTT+TGG | + | chr1_2:62896731-62896750 | Msa0083770:CDS | 40.0% |
| GTTTCAGGCTATGTTTATGG+AGG | + | chr1_2:62896923-62896942 | Msa0083770:intron | 40.0% | |
| GTTTATGGAGGAGTTCTTGA+TGG | + | chr1_2:62896935-62896954 | Msa0083770:CDS | 40.0% | |
| ! | TTGATGGATCCATCTTTCCA+TGG | + | chr1_2:62896951-62896970 | Msa0083770:CDS | 40.0% |
| CATAGTTTGAATCAGTGCCA+TGG | - | chr1_2:62896971-62896990 | None:intergenic | 40.0% | |
| AATAGTCACCCCAAAAGGTT+TGG | + | chr1_2:62897013-62897032 | Msa0083770:CDS | 40.0% | |
| ATAGTCACCCCAAAAGGTTT+GGG | + | chr1_2:62897014-62897033 | Msa0083770:CDS | 40.0% | |
| TTAGGAATGATTGTGCGGTT+TGG | + | chr1_2:62897128-62897147 | Msa0083770:intron | 40.0% | |
| TAGGAATGATTGTGCGGTTT+GGG | + | chr1_2:62897129-62897148 | Msa0083770:intron | 40.0% | |
| ATTAACTGGATGATGCAACG+TGG | + | chr1_2:62897154-62897173 | Msa0083770:CDS | 40.0% | |
| AGCCAAATTATGCAAACAGG+TGG | + | chr1_2:62897269-62897288 | Msa0083770:intron | 40.0% | |
| GTCCACCTGTTTGCATAATT+TGG | - | chr1_2:62897274-62897293 | None:intergenic | 40.0% | |
| CGACAAGAGAGATTTGATGT+TGG | + | chr1_2:62897344-62897363 | Msa0083770:CDS | 40.0% | |
| ! | GGTGTCTTGGTAACTACAAT+AGG | - | chr1_2:62895796-62895815 | None:intergenic | 40.0% |
| GATGGTCCATCTAATTTGGA+GGG | - | chr1_2:62895858-62895877 | None:intergenic | 40.0% | |
| AGATGGTCCATCTAATTTGG+AGG | - | chr1_2:62895859-62895878 | None:intergenic | 40.0% | |
| ACTACCGAAGACATCAATAG+TGG | - | chr1_2:62895902-62895921 | None:intergenic | 40.0% | |
| ! | TCTCCCGTAACGAATTTGTT+GGG | - | chr1_2:62896248-62896267 | None:intergenic | 40.0% |
| ATCTCCCGTAACGAATTTGT+TGG | - | chr1_2:62896249-62896268 | None:intergenic | 40.0% | |
| GCTAACTTACGATGCAAGAA+AGG | + | chr1_2:62896393-62896412 | Msa0083770:CDS | 40.0% | |
| ! | GTTGGCAGAAACCAAGTTTT+AGG | - | chr1_2:62896430-62896449 | None:intergenic | 40.0% |
| AAACATGTATGAGCGCATAG+GGG | - | chr1_2:62896502-62896521 | None:intergenic | 40.0% | |
| ! | TGTCGTGGAATTCACCATTT+TGG | + | chr1_2:62896549-62896568 | Msa0083770:CDS | 40.0% |
| !!! | TCATCTACACTGGTTCCTTT+TGG | + | chr1_2:62896731-62896750 | Msa0083770:CDS | 40.0% |
| GTTTCAGGCTATGTTTATGG+AGG | + | chr1_2:62896923-62896942 | Msa0083770:intron | 40.0% | |
| GTTTATGGAGGAGTTCTTGA+TGG | + | chr1_2:62896935-62896954 | Msa0083770:CDS | 40.0% | |
| ! | TTGATGGATCCATCTTTCCA+TGG | + | chr1_2:62896951-62896970 | Msa0083770:CDS | 40.0% |
| CATAGTTTGAATCAGTGCCA+TGG | - | chr1_2:62896971-62896990 | None:intergenic | 40.0% | |
| AATAGTCACCCCAAAAGGTT+TGG | + | chr1_2:62897013-62897032 | Msa0083770:CDS | 40.0% | |
| ATAGTCACCCCAAAAGGTTT+GGG | + | chr1_2:62897014-62897033 | Msa0083770:CDS | 40.0% | |
| TTAGGAATGATTGTGCGGTT+TGG | + | chr1_2:62897128-62897147 | Msa0083770:intron | 40.0% | |
| TAGGAATGATTGTGCGGTTT+GGG | + | chr1_2:62897129-62897148 | Msa0083770:intron | 40.0% | |
| ATTAACTGGATGATGCAACG+TGG | + | chr1_2:62897154-62897173 | Msa0083770:CDS | 40.0% | |
| AGCCAAATTATGCAAACAGG+TGG | + | chr1_2:62897269-62897288 | Msa0083770:intron | 40.0% | |
| GTCCACCTGTTTGCATAATT+TGG | - | chr1_2:62897274-62897293 | None:intergenic | 40.0% | |
| CGACAAGAGAGATTTGATGT+TGG | + | chr1_2:62897344-62897363 | Msa0083770:CDS | 40.0% | |
| GACATCAGTAGAAGAAGCGA+AGG | + | chr1_2:62895573-62895592 | Msa0083770:CDS | 45.0% | |
| ! | CTTGATGGAGGTGTATCATG+TGG | - | chr1_2:62895622-62895641 | None:intergenic | 45.0% |
| AGATGGACCATCTATTCCGA+AGG | + | chr1_2:62895866-62895885 | Msa0083770:intron | 45.0% | |
| ATTGGGCGCATCATGTAACA+AGG | + | chr1_2:62896201-62896220 | Msa0083770:CDS | 45.0% | |
| TTTAGCGATATGTGCTGTCG+TGG | + | chr1_2:62896534-62896553 | Msa0083770:intron | 45.0% | |
| TGACTCGTACCAAAGTTCGT+CGG | + | chr1_2:62896788-62896807 | Msa0083770:CDS | 45.0% | |
| GAATCAGTGCCATGGAAAGA+TGG | - | chr1_2:62896963-62896982 | None:intergenic | 45.0% | |
| ! | TTGACGTCCCAAACCTTTTG+GGG | - | chr1_2:62897024-62897043 | None:intergenic | 45.0% |
| ! | CTTGACGTCCCAAACCTTTT+GGG | - | chr1_2:62897025-62897044 | None:intergenic | 45.0% |
| ! | CAAAAGGTTTGGGACGTCAA+GGG | + | chr1_2:62897024-62897043 | Msa0083770:CDS | 45.0% |
| ! | AAAAGGTTTGGGACGTCAAG+GGG | + | chr1_2:62897025-62897044 | Msa0083770:CDS | 45.0% |
| ! | GTGCGGTTTGGGTAATTAAC+TGG | + | chr1_2:62897140-62897159 | Msa0083770:CDS | 45.0% |
| ATGATGCAACGTGGAGAGAA+TGG | + | chr1_2:62897163-62897182 | Msa0083770:CDS | 45.0% | |
| TTATGCAAACAGGTGGACGA+AGG | + | chr1_2:62897276-62897295 | Msa0083770:intron | 45.0% | |
| GACATCAGTAGAAGAAGCGA+AGG | + | chr1_2:62895573-62895592 | Msa0083770:CDS | 45.0% | |
| ! | CTTGATGGAGGTGTATCATG+TGG | - | chr1_2:62895622-62895641 | None:intergenic | 45.0% |
| AGATGGACCATCTATTCCGA+AGG | + | chr1_2:62895866-62895885 | Msa0083770:intron | 45.0% | |
| ATTGGGCGCATCATGTAACA+AGG | + | chr1_2:62896201-62896220 | Msa0083770:CDS | 45.0% | |
| TTTAGCGATATGTGCTGTCG+TGG | + | chr1_2:62896534-62896553 | Msa0083770:intron | 45.0% | |
| TGACTCGTACCAAAGTTCGT+CGG | + | chr1_2:62896788-62896807 | Msa0083770:CDS | 45.0% | |
| GAATCAGTGCCATGGAAAGA+TGG | - | chr1_2:62896963-62896982 | None:intergenic | 45.0% | |
| ! | TTGACGTCCCAAACCTTTTG+GGG | - | chr1_2:62897024-62897043 | None:intergenic | 45.0% |
| ! | CTTGACGTCCCAAACCTTTT+GGG | - | chr1_2:62897025-62897044 | None:intergenic | 45.0% |
| ! | CAAAAGGTTTGGGACGTCAA+GGG | + | chr1_2:62897024-62897043 | Msa0083770:CDS | 45.0% |
| ! | AAAAGGTTTGGGACGTCAAG+GGG | + | chr1_2:62897025-62897044 | Msa0083770:CDS | 45.0% |
| ! | GTGCGGTTTGGGTAATTAAC+TGG | + | chr1_2:62897140-62897159 | Msa0083770:CDS | 45.0% |
| ATGATGCAACGTGGAGAGAA+TGG | + | chr1_2:62897163-62897182 | Msa0083770:CDS | 45.0% | |
| TTATGCAAACAGGTGGACGA+AGG | + | chr1_2:62897276-62897295 | Msa0083770:intron | 45.0% | |
| !!! | TTAATATTTTTAATTGTTAT+AGG | + | chr1_2:62896153-62896172 | Msa0083770:intron | 5.0% |
| !!! | TTAATATTTTTAATTGTTAT+AGG | + | chr1_2:62896153-62896172 | Msa0083770:intron | 5.0% |
| ! | GGAGGTGTATCATGTGGACA+AGG | - | chr1_2:62895616-62895635 | None:intergenic | 50.0% |
| TGTAGTTACCAAGACACCGC+TGG | + | chr1_2:62895798-62895817 | Msa0083770:intron | 50.0% | |
| GTAGTTACCAAGACACCGCT+GGG | + | chr1_2:62895799-62895818 | Msa0083770:intron | 50.0% | |
| TAGTTACCAAGACACCGCTG+GGG | + | chr1_2:62895800-62895819 | Msa0083770:intron | 50.0% | |
| ! | CAAAGTTCGTCGGTGCTTCA+CGG | + | chr1_2:62896798-62896817 | Msa0083770:CDS | 50.0% |
| ! | CCTTGACGTCCCAAACCTTT+TGG | - | chr1_2:62897026-62897045 | None:intergenic | 50.0% |
| ! | CCAAAAGGTTTGGGACGTCA+AGG | + | chr1_2:62897023-62897042 | Msa0083770:CDS | 50.0% |
| ! | GGAGGTGTATCATGTGGACA+AGG | - | chr1_2:62895616-62895635 | None:intergenic | 50.0% |
| TGTAGTTACCAAGACACCGC+TGG | + | chr1_2:62895798-62895817 | Msa0083770:intron | 50.0% | |
| GTAGTTACCAAGACACCGCT+GGG | + | chr1_2:62895799-62895818 | Msa0083770:intron | 50.0% | |
| TAGTTACCAAGACACCGCTG+GGG | + | chr1_2:62895800-62895819 | Msa0083770:intron | 50.0% | |
| ! | CAAAGTTCGTCGGTGCTTCA+CGG | + | chr1_2:62896798-62896817 | Msa0083770:CDS | 50.0% |
| ! | CCTTGACGTCCCAAACCTTT+TGG | - | chr1_2:62897026-62897045 | None:intergenic | 50.0% |
| ! | CCAAAAGGTTTGGGACGTCA+AGG | + | chr1_2:62897023-62897042 | Msa0083770:CDS | 50.0% |
| !! | CGTGAAGCACCGACGAACTT+TGG | - | chr1_2:62896800-62896819 | None:intergenic | 55.0% |
| !! | CGTGAAGCACCGACGAACTT+TGG | - | chr1_2:62896800-62896819 | None:intergenic | 55.0% |
| TGTGTACCCCAGCGGTGTCT+TGG | - | chr1_2:62895809-62895828 | None:intergenic | 60.0% | |
| CGTGGAACTGTGTACCCCAG+CGG | - | chr1_2:62895817-62895836 | None:intergenic | 60.0% | |
| ! | GTTCGTCGGTGCTTCACGGA+AGG | + | chr1_2:62896802-62896821 | Msa0083770:CDS | 60.0% |
| ! | GGTTTGGGACGTCAAGGGGA+TGG | + | chr1_2:62897029-62897048 | Msa0083770:CDS | 60.0% |
| TGTGTACCCCAGCGGTGTCT+TGG | - | chr1_2:62895809-62895828 | None:intergenic | 60.0% | |
| CGTGGAACTGTGTACCCCAG+CGG | - | chr1_2:62895817-62895836 | None:intergenic | 60.0% | |
| ! | GTTCGTCGGTGCTTCACGGA+AGG | + | chr1_2:62896802-62896821 | Msa0083770:CDS | 60.0% |
| ! | GGTTTGGGACGTCAAGGGGA+TGG | + | chr1_2:62897029-62897048 | Msa0083770:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 62895571 | 62897416 | 62895571 | ID=Msa0083770;Name=Msa0083770 |
| chr1_2 | mRNA | 62895571 | 62897416 | 62895571 | ID=Msa0083770-mRNA-1;Parent=Msa0083770;Name=Msa0083770-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|0.44|0.62|0.77|9|0|355 |
| chr1_2 | exon | 62895571 | 62895798 | 62895571 | ID=Msa0083770-mRNA-1:exon:21025;Parent=Msa0083770-mRNA-1 |
| chr1_2 | exon | 62895981 | 62896087 | 62895981 | ID=Msa0083770-mRNA-1:exon:21026;Parent=Msa0083770-mRNA-1 |
| chr1_2 | exon | 62896175 | 62896268 | 62896175 | ID=Msa0083770-mRNA-1:exon:21027;Parent=Msa0083770-mRNA-1 |
| chr1_2 | exon | 62896370 | 62896459 | 62896370 | ID=Msa0083770-mRNA-1:exon:21028;Parent=Msa0083770-mRNA-1 |
| chr1_2 | exon | 62896539 | 62896628 | 62896539 | ID=Msa0083770-mRNA-1:exon:21029;Parent=Msa0083770-mRNA-1 |
| chr1_2 | exon | 62896711 | 62896845 | 62896711 | ID=Msa0083770-mRNA-1:exon:21030;Parent=Msa0083770-mRNA-1 |
| chr1_2 | exon | 62896930 | 62897054 | 62896930 | ID=Msa0083770-mRNA-1:exon:21031;Parent=Msa0083770-mRNA-1 |
| chr1_2 | exon | 62897132 | 62897198 | 62897132 | ID=Msa0083770-mRNA-1:exon:21032;Parent=Msa0083770-mRNA-1 |
| chr1_2 | exon | 62897288 | 62897416 | 62897288 | ID=Msa0083770-mRNA-1:exon:21033;Parent=Msa0083770-mRNA-1 |
| chr1_2 | CDS | 62895571 | 62895798 | 62895571 | ID=Msa0083770-mRNA-1:cds;Parent=Msa0083770-mRNA-1 |
| chr1_2 | CDS | 62895981 | 62896087 | 62895981 | ID=Msa0083770-mRNA-1:cds;Parent=Msa0083770-mRNA-1 |
| chr1_2 | CDS | 62896175 | 62896268 | 62896175 | ID=Msa0083770-mRNA-1:cds;Parent=Msa0083770-mRNA-1 |
| chr1_2 | CDS | 62896370 | 62896459 | 62896370 | ID=Msa0083770-mRNA-1:cds;Parent=Msa0083770-mRNA-1 |
| chr1_2 | CDS | 62896539 | 62896628 | 62896539 | ID=Msa0083770-mRNA-1:cds;Parent=Msa0083770-mRNA-1 |
| chr1_2 | CDS | 62896711 | 62896845 | 62896711 | ID=Msa0083770-mRNA-1:cds;Parent=Msa0083770-mRNA-1 |
| chr1_2 | CDS | 62896930 | 62897054 | 62896930 | ID=Msa0083770-mRNA-1:cds;Parent=Msa0083770-mRNA-1 |
| chr1_2 | CDS | 62897132 | 62897198 | 62897132 | ID=Msa0083770-mRNA-1:cds;Parent=Msa0083770-mRNA-1 |
| chr1_2 | CDS | 62897288 | 62897416 | 62897288 | ID=Msa0083770-mRNA-1:cds;Parent=Msa0083770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
