Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495620 | XP_013443065.1 | 99.183 | 367 | 3 | 0 | 1 | 367 | 1 | 367 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495620 | A0A072TU53 | 99.183 | 367 | 3 | 0 | 1 | 367 | 1 | 367 | 0.0 | 748 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021290 | Msa0495620 | 0.860504 | 1.972360e-63 | -8.615850e-47 |
| Msa0021320 | Msa0495620 | 0.860371 | 2.164719e-63 | -8.615850e-47 |
| Msa0045620 | Msa0495620 | 0.840827 | 6.878194e-58 | -8.615850e-47 |
| Msa0050150 | Msa0495620 | 0.804914 | 1.718294e-49 | -8.615850e-47 |
| Msa0050530 | Msa0495620 | 0.808698 | 2.725474e-50 | -8.615850e-47 |
| Msa0055880 | Msa0495620 | 0.826676 | 2.380153e-54 | -8.615850e-47 |
| Msa0056000 | Msa0495620 | 0.828204 | 1.023795e-54 | -8.615850e-47 |
| Msa0063190 | Msa0495620 | 0.815907 | 7.266670e-52 | -8.615850e-47 |
| Msa0080370 | Msa0495620 | 0.817278 | 3.582545e-52 | -8.615850e-47 |
| Msa0089540 | Msa0495620 | 0.805974 | 1.029936e-49 | -8.615850e-47 |
| Msa0092350 | Msa0495620 | 0.801362 | 9.334570e-49 | -8.615850e-47 |
| Msa0094960 | Msa0495620 | 0.807274 | 5.475167e-50 | -8.615850e-47 |
| Msa0100600 | Msa0495620 | 0.847109 | 1.423362e-59 | -8.615850e-47 |
| Msa0100890 | Msa0495620 | 0.823523 | 1.322840e-53 | -8.615850e-47 |
| Msa0108630 | Msa0495620 | 0.807847 | 4.139177e-50 | -8.615850e-47 |
| Msa0131810 | Msa0495620 | 0.819725 | 9.986882e-53 | -8.615850e-47 |
| Msa0132460 | Msa0495620 | 0.808473 | 3.044003e-50 | -8.615850e-47 |
| Msa0134580 | Msa0495620 | 0.806369 | 8.507646e-50 | -8.615850e-47 |
| Msa0153510 | Msa0495620 | 0.826599 | 2.482763e-54 | -8.615850e-47 |
| Msa0173250 | Msa0495620 | 0.834753 | 2.497473e-56 | -8.615850e-47 |
| Msa0182050 | Msa0495620 | 0.805647 | 1.206734e-49 | -8.615850e-47 |
| Msa0185690 | Msa0495620 | 0.809381 | 1.946654e-50 | -8.615850e-47 |
| Msa0192050 | Msa0495620 | 0.819839 | 9.408697e-53 | -8.615850e-47 |
| Msa0368920 | Msa0495620 | 0.801066 | 1.072970e-48 | -8.615850e-47 |
| Msa0388250 | Msa0495620 | 0.820364 | 7.133227e-53 | -8.615850e-47 |
| Msa0401060 | Msa0495620 | 0.883395 | 4.651349e-71 | -8.615850e-47 |
| Msa0416210 | Msa0495620 | 0.856080 | 4.096247e-62 | -8.615850e-47 |
| Msa0433630 | Msa0495620 | 0.845267 | 4.518979e-59 | -8.615850e-47 |
| Msa0436440 | Msa0495620 | 0.827286 | 1.701598e-54 | -8.615850e-47 |
| Msa0447870 | Msa0495620 | 0.825790 | 3.868880e-54 | -8.615850e-47 |
| Msa0453530 | Msa0495620 | 0.817579 | 3.064804e-52 | -8.615850e-47 |
| Msa0458100 | Msa0495620 | 0.830712 | 2.516601e-55 | -8.615850e-47 |
| Msa0260980 | Msa0495620 | 0.815222 | 1.032804e-51 | -8.615850e-47 |
| Msa0304250 | Msa0495620 | 0.815122 | 1.086580e-51 | -8.615850e-47 |
| Msa0356640 | Msa0495620 | 0.994293 | 4.373451e-206 | -8.615850e-47 |
| Msa0495620 | Msa0515110 | 0.800678 | 1.287452e-48 | -8.615850e-47 |
| Msa0495620 | Msa0521510 | 0.850989 | 1.188347e-60 | -8.615850e-47 |
| Msa0495620 | Msa0521530 | 0.817685 | 2.900613e-52 | -8.615850e-47 |
| Msa0495620 | Msa0526150 | 0.806694 | 7.263845e-50 | -8.615850e-47 |
| Msa0495620 | Msa0566460 | 0.806487 | 8.032248e-50 | -8.615850e-47 |
| Msa0495620 | Msa0572360 | 0.831371 | 1.733475e-55 | -8.615850e-47 |
| Msa0495620 | Msa0572830 | 0.805989 | 1.022641e-49 | -8.615850e-47 |
| Msa0495620 | Msa0580940 | 0.818845 | 1.584791e-52 | -8.615850e-47 |
| Msa0495620 | Msa0618990 | 0.810144 | 1.333560e-50 | -8.615850e-47 |
| Msa0495620 | Msa0623310 | 0.849445 | 3.218198e-60 | -8.615850e-47 |
| Msa0495620 | Msa0630440 | 0.837283 | 5.693823e-57 | -8.615850e-47 |
| Msa0495620 | Msa0652160 | 0.839666 | 1.382812e-57 | -8.615850e-47 |
| Msa0495620 | Msa0658120 | 0.802595 | 5.206134e-49 | -8.615850e-47 |
| Msa0495620 | Msa0687370 | 0.805610 | 1.228224e-49 | -8.615850e-47 |
| Msa0495620 | Msa0688380 | 0.804027 | 2.630351e-49 | -8.615850e-47 |
| Msa0495620 | Msa0689660 | 0.837607 | 4.704026e-57 | -8.615850e-47 |
| Msa0495620 | Msa0689830 | 0.811027 | 8.594514e-51 | -8.615850e-47 |
| Msa0495620 | Msa0694710 | 0.816658 | 4.936809e-52 | -8.615850e-47 |
| Msa0495620 | Msa0707260 | 0.822633 | 2.133905e-53 | -8.615850e-47 |
| Msa0495620 | Msa0708630 | 0.808472 | 3.045888e-50 | -8.615850e-47 |
| Msa0495620 | Msa0846900 | 0.829928 | 3.911374e-55 | -8.615850e-47 |
| Msa0495620 | Msa0891700 | 0.819646 | 1.041117e-52 | -8.615850e-47 |
| Msa0495620 | Msa0900090 | 0.802710 | 4.929384e-49 | -8.615850e-47 |
| Msa0495620 | Msa0900830 | 0.819366 | 1.206090e-52 | -8.615850e-47 |
| Msa0495620 | Msa0925330 | 0.842680 | 2.230560e-58 | -8.615850e-47 |
| Msa0495620 | Msa0926240 | 0.800503 | 1.397736e-48 | -8.615850e-47 |
| Msa0495620 | Msa0945900 | 0.813775 | 2.157877e-51 | -8.615850e-47 |
| Msa0495620 | Msa0965800 | 0.818244 | 2.168693e-52 | -8.615850e-47 |
| Msa0495620 | Msa0966120 | 0.846656 | 1.894047e-59 | -8.615850e-47 |
| Msa0495620 | Msa1001620 | 0.842401 | 2.645033e-58 | -8.615850e-47 |
| Msa0495620 | Msa1019180 | 0.826073 | 3.314229e-54 | -8.615850e-47 |
| Msa0495620 | Msa1021560 | 0.835270 | 1.850441e-56 | -8.615850e-47 |
| Msa0495620 | Msa1025200 | 0.830915 | 2.244681e-55 | -8.615850e-47 |
| Msa0495620 | Msa1025220 | 0.838800 | 2.318778e-57 | -8.615850e-47 |
| Msa0495620 | Msa1026710 | 0.805939 | 1.047673e-49 | -8.615850e-47 |
| Msa0495620 | Msa1038860 | 0.828076 | 1.099398e-54 | -8.615850e-47 |
| Msa0495620 | Msa1050260 | 0.802451 | 5.575404e-49 | -8.615850e-47 |
| Msa0495620 | Msa1078080 | 0.824081 | 9.790658e-54 | -8.615850e-47 |
| Msa0495620 | Msa1085680 | 0.804301 | 2.306846e-49 | -8.615850e-47 |
| Msa0495620 | Msa1104110 | 0.819713 | 1.005325e-52 | -8.615850e-47 |
| Msa0495620 | Msa1124210 | 0.816125 | 6.498236e-52 | -8.615850e-47 |
| Msa0495620 | Msa1128810 | 0.800710 | 1.268571e-48 | -8.615850e-47 |
| Msa0495620 | Msa1138800 | 0.800192 | 1.617677e-48 | -8.615850e-47 |
| Msa0495620 | Msa1147700 | 0.837253 | 5.796148e-57 | -8.615850e-47 |
| Msa0495620 | Msa1148930 | 0.830042 | 3.668829e-55 | -8.615850e-47 |
| Msa0495620 | Msa1166670 | 0.800098 | 1.690345e-48 | -8.615850e-47 |
| Msa0495620 | Msa1220580 | 0.852337 | 4.933862e-61 | -8.615850e-47 |
| Msa0495620 | Msa1226370 | 0.832824 | 7.580513e-56 | -8.615850e-47 |
| Msa0495620 | Msa1244920 | 0.801288 | 9.664200e-49 | -8.615850e-47 |
| Msa0495620 | Msa1255850 | 0.808617 | 2.835931e-50 | -8.615850e-47 |
| Msa0495620 | Msa1282300 | 0.815548 | 8.736059e-52 | -8.615850e-47 |
| Msa0495620 | Msa1296090 | 0.826944 | 2.053929e-54 | -8.615850e-47 |
| Msa0495620 | Msa1301980 | 0.810111 | 1.355659e-50 | -8.615850e-47 |
| Msa0495620 | Msa1333500 | 0.809662 | 1.693666e-50 | -8.615850e-47 |
| Msa0495620 | Msa1334560 | 0.849247 | 3.654757e-60 | -8.615850e-47 |
| Msa0495620 | Msa1352580 | 0.839591 | 1.445730e-57 | -8.615850e-47 |
| Msa0495620 | Msa1363010 | 0.837608 | 4.700529e-57 | -8.615850e-47 |
| Msa0495620 | Msa1368170 | 0.840537 | 8.193631e-58 | -8.615850e-47 |
| Msa0495620 | Msa1371800 | 0.836541 | 8.809048e-57 | -8.615850e-47 |
| Msa0495620 | Msa1376310 | 0.834396 | 3.071730e-56 | -8.615850e-47 |
| Msa0495620 | Msa1379940 | 0.857373 | 1.706563e-62 | -8.615850e-47 |
| Msa0495620 | Msa1385570 | 0.841800 | 3.814507e-58 | -8.615850e-47 |
| Msa0495620 | Msa1388890 | 0.839156 | 1.875027e-57 | -8.615850e-47 |
| Msa0495620 | Msa1395050 | 0.804498 | 2.098421e-49 | -8.615850e-47 |
| Msa0495620 | Msa1402010 | 0.814540 | 1.462609e-51 | -8.615850e-47 |
| Msa0495620 | Msa1408160 | 0.811595 | 6.470766e-51 | -8.615850e-47 |
| Msa0495620 | Msa1419900 | 0.813976 | 1.948135e-51 | -8.615850e-47 |
| Msa0495620 | Msa1420830 | 0.847729 | 9.615295e-60 | -8.615850e-47 |
| Msa0495620 | Msa1448960 | 0.811122 | 8.198960e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495620 | MtrunA17_Chr3g0089391 | 99.183 | 367 | 3 | 0 | 1 | 367 | 1 | 367 | 0.0 | 748 |
| Msa0495620 | MtrunA17_Chr4g0019581 | 78.804 | 368 | 77 | 1 | 1 | 367 | 72 | 439 | 0.0 | 630 |
| Msa0495620 | MtrunA17_Chr4g0019571 | 80.654 | 367 | 71 | 0 | 1 | 367 | 4 | 370 | 0.0 | 625 |
| Msa0495620 | MtrunA17_Chr4g0019601 | 78.474 | 367 | 79 | 0 | 1 | 367 | 4 | 370 | 0.0 | 620 |
| Msa0495620 | MtrunA17_Chr1g0149051 | 56.024 | 332 | 144 | 2 | 32 | 361 | 37 | 368 | 5.87e-133 | 385 |
| Msa0495620 | MtrunA17_Chr2g0332541 | 50.298 | 336 | 161 | 2 | 32 | 361 | 26 | 361 | 4.21e-119 | 349 |
| Msa0495620 | MtrunA17_Chr2g0286051 | 43.243 | 333 | 188 | 1 | 32 | 363 | 33 | 365 | 1.04e-92 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495620 | AT3G08030.1 | 68.103 | 348 | 110 | 1 | 21 | 367 | 18 | 365 | 4.04e-177 | 496 |
| Msa0495620 | AT3G08030.2 | 69.350 | 323 | 98 | 1 | 46 | 367 | 1 | 323 | 2.40e-168 | 473 |
| Msa0495620 | AT2G41800.1 | 61.671 | 347 | 129 | 3 | 22 | 364 | 21 | 367 | 1.33e-154 | 440 |
| Msa0495620 | AT2G41810.1 | 58.470 | 366 | 147 | 3 | 3 | 363 | 1 | 366 | 3.13e-152 | 434 |
| Msa0495620 | AT5G25460.1 | 53.541 | 353 | 163 | 1 | 10 | 361 | 9 | 361 | 8.41e-140 | 402 |
| Msa0495620 | AT5G11420.1 | 55.891 | 331 | 145 | 1 | 32 | 361 | 28 | 358 | 4.96e-139 | 400 |
| Msa0495620 | AT4G32460.2 | 52.825 | 354 | 159 | 2 | 9 | 361 | 11 | 357 | 8.93e-135 | 389 |
| Msa0495620 | AT4G32460.1 | 52.825 | 354 | 159 | 2 | 9 | 361 | 11 | 357 | 8.93e-135 | 389 |
| Msa0495620 | AT4G32460.4 | 55.521 | 317 | 140 | 1 | 46 | 361 | 1 | 317 | 3.79e-130 | 376 |
| Msa0495620 | AT4G32460.3 | 55.521 | 317 | 140 | 1 | 46 | 361 | 1 | 317 | 3.79e-130 | 376 |
| Msa0495620 | AT1G80240.1 | 50.862 | 348 | 169 | 2 | 15 | 361 | 14 | 360 | 1.73e-121 | 355 |
| Msa0495620 | AT1G29980.1 | 41.547 | 349 | 194 | 2 | 25 | 363 | 34 | 382 | 8.92e-94 | 286 |
| Msa0495620 | AT1G29980.2 | 42.353 | 340 | 186 | 2 | 34 | 363 | 7 | 346 | 1.17e-93 | 285 |
| Msa0495620 | AT2G34510.1 | 42.857 | 336 | 186 | 2 | 34 | 363 | 43 | 378 | 2.01e-93 | 285 |
| Msa0495620 | AT2G34510.2 | 44.863 | 292 | 155 | 2 | 78 | 363 | 1 | 292 | 2.74e-85 | 261 |
| Msa0495620 | AT5G14150.2 | 28.451 | 355 | 221 | 11 | 31 | 367 | 22 | 361 | 7.62e-31 | 121 |
| Msa0495620 | AT5G14150.1 | 28.451 | 355 | 221 | 11 | 31 | 367 | 22 | 361 | 7.62e-31 | 121 |
Find 100 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTTGGTTGAGTTGAAAAT+TGG | 0.165055 | 3_4:+25116469 | None:intergenic |
| TTGGTATTCTTTAGGTCTTT+AGG | 0.165937 | 3_4:+25117973 | None:intergenic |
| CCCTTCCCTTCGGATTTAAA+TGG | 0.190979 | 3_4:+25116163 | None:intergenic |
| CAACTCTATGCTTTAATTCT+TGG | 0.196335 | 3_4:-25117781 | Msa0495620:CDS |
| TGGTATTCTTTAGGTCTTTA+GGG | 0.221241 | 3_4:+25117974 | None:intergenic |
| AAACCATTGATTTCCCATTT+TGG | 0.221713 | 3_4:+25117928 | None:intergenic |
| TTTGCAGTTTATCTTCAAAA+TGG | 0.237288 | 3_4:-25118018 | Msa0495620:intron |
| TTCAATTTCTCAAACAATTA+AGG | 0.237533 | 3_4:-25117815 | Msa0495620:CDS |
| GTGTTACCTTCTGGTATTCT+AGG | 0.242497 | 3_4:+25119060 | None:intergenic |
| CAATGAGCTTGGTATTCTTT+AGG | 0.255171 | 3_4:+25117965 | None:intergenic |
| ATGGTCTATTGCAGTTAATT+TGG | 0.269737 | 3_4:-25116524 | Msa0495620:intron |
| TTCTTTAGGTCTTTAGGGTT+TGG | 0.285094 | 3_4:+25117979 | None:intergenic |
| CATACAAGAATCGATGATTA+TGG | 0.329909 | 3_4:-25116064 | Msa0495620:CDS |
| ACAGGCAAGAGAAATCTTAA+AGG | 0.362453 | 3_4:+25115859 | None:intergenic |
| AGATAGATAGATAGAGAGGT+TGG | 0.363091 | 3_4:+25119235 | None:intergenic |
| CTGTGGTCCTGTTCTTGATC+AGG | 0.368709 | 3_4:-25116035 | Msa0495620:CDS |
| CGTTGGTTGAGTTGAAAATT+GGG | 0.369942 | 3_4:+25116470 | None:intergenic |
| GGAGCAGTCGAGCTTGTTGC+CGG | 0.370727 | 3_4:-25116328 | Msa0495620:CDS |
| TATGTTTCATTACCTCTTGT+AGG | 0.391188 | 3_4:+25117526 | None:intergenic |
| GAAAGAGTGTGAAGAGGGTT+TGG | 0.399098 | 3_4:+25119163 | None:intergenic |
| TTTGAAACATAAAGAAGAAC+AGG | 0.400015 | 3_4:+25115841 | None:intergenic |
| AATAGGTCTTGTTTGAATTG+TGG | 0.401459 | 3_4:-25115817 | Msa0495620:three_prime_UTR |
| TGCAATGGCGCTTTCTCTGC+CGG | 0.406086 | 3_4:+25116309 | None:intergenic |
| TTCAATGTCCCATTCGGACT+TGG | 0.408118 | 3_4:-25116349 | Msa0495620:CDS |
| TCATTACCTCTTGTAGGCAT+TGG | 0.412756 | 3_4:+25117532 | None:intergenic |
| CTAAAGAATACCAAGCTCAT+TGG | 0.415170 | 3_4:-25117964 | Msa0495620:CDS |
| TCTTCAAAATGGAAACTTTG+AGG | 0.422549 | 3_4:-25118007 | Msa0495620:CDS |
| TGGAAAAGCAGAGCTAAGTA+TGG | 0.425506 | 3_4:+25119194 | None:intergenic |
| ATAGGTCTTGTTTGAATTGT+GGG | 0.431290 | 3_4:-25115816 | Msa0495620:three_prime_UTR |
| ATCTCTGTGCCACCACAAAC+TGG | 0.431643 | 3_4:-25117721 | Msa0495620:CDS |
| CAAACATTGTATAGTCTCAA+TGG | 0.435698 | 3_4:-25117685 | Msa0495620:CDS |
| AAAATGGGAAATCAATGGTT+TGG | 0.448163 | 3_4:-25117926 | Msa0495620:CDS |
| CTTTAATTCTTGGTGCATCA+AGG | 0.450617 | 3_4:-25117771 | Msa0495620:CDS |
| TTACCTCTTGTAGGCATTGG+AGG | 0.453519 | 3_4:+25117535 | None:intergenic |
| CAAATTCATATTTAAGCCAC+AGG | 0.459329 | 3_4:+25116001 | None:intergenic |
| TATGAATTTACCCTTCCCTT+CGG | 0.469027 | 3_4:+25116153 | None:intergenic |
| CTACCAAAATGGGAAATCAA+TGG | 0.469575 | 3_4:-25117931 | Msa0495620:CDS |
| CACACTCTTTCAAGTTCCAA+TGG | 0.484294 | 3_4:-25119151 | Msa0495620:exon |
| AAGCATTTCAATGTCCCATT+CGG | 0.485220 | 3_4:-25116355 | Msa0495620:CDS |
| AAAGTTCCATTTAAATCCGA+AGG | 0.489665 | 3_4:-25116169 | Msa0495620:CDS |
| GATAGATAGATAGAGAGGTT+GGG | 0.490768 | 3_4:+25119236 | None:intergenic |
| GATAGATAGAGAGGTTGGGT+TGG | 0.497607 | 3_4:+25119240 | None:intergenic |
| ACTATAACCTGATCAAGAAC+AGG | 0.503775 | 3_4:+25116028 | None:intergenic |
| TCCATTTAAATCCGAAGGGA+AGG | 0.505472 | 3_4:-25116164 | Msa0495620:CDS |
| AGAGATCTTCTTGTTGTGGT+GGG | 0.513960 | 3_4:+25116437 | None:intergenic |
| TCTACTCACCACTCCCTGGT+TGG | 0.515615 | 3_4:-25116417 | Msa0495620:CDS |
| CGACTGCTCCAAGTCCGAAT+GGG | 0.519844 | 3_4:+25116341 | None:intergenic |
| GTTGAGTTGAAAATTGGGAA+TGG | 0.524305 | 3_4:+25116475 | None:intergenic |
| AACTTGAAAGAGTGTGAAGA+GGG | 0.525772 | 3_4:+25119158 | None:intergenic |
| AATGGACCCTCTTCAAAGCT+AGG | 0.531679 | 3_4:+25116493 | None:intergenic |
| AGAGAGAAGGGAAATTATGA+TGG | 0.536229 | 3_4:+25119275 | None:intergenic |
| ATTAAAGCATAGAGTTGACC+AGG | 0.539744 | 3_4:+25117787 | None:intergenic |
| GTGACTGGTGGTCCTCAACC+AGG | 0.542126 | 3_4:-25117895 | Msa0495620:CDS |
| TAGAGATCTTCTTGTTGTGG+TGG | 0.543583 | 3_4:+25116436 | None:intergenic |
| AGATAGATAGATAGATAGAG+AGG | 0.544206 | 3_4:+25119231 | None:intergenic |
| TCGACTGCTCCAAGTCCGAA+TGG | 0.550994 | 3_4:+25116340 | None:intergenic |
| CAATGGTGATGTTATTGCAT+GGG | 0.551959 | 3_4:-25117668 | Msa0495620:CDS |
| CAAACAATTAAGGTCAAACC+TGG | 0.553729 | 3_4:-25117805 | Msa0495620:CDS |
| TACAAGATCACATTCTCAGT+TGG | 0.553917 | 3_4:-25116256 | Msa0495620:CDS |
| AAAGGAACATCACCAGTTTG+TGG | 0.558532 | 3_4:+25117709 | None:intergenic |
| GAAAAGAGAGACACCGCCAT+TGG | 0.567460 | 3_4:+25119135 | None:intergenic |
| GAGTAGAGATCTTCTTGTTG+TGG | 0.568431 | 3_4:+25116433 | None:intergenic |
| TAGAATGTGAGTCTAGTCCT+TGG | 0.569730 | 3_4:+25116100 | None:intergenic |
| CCATTTAAATCCGAAGGGAA+GGG | 0.572389 | 3_4:-25116163 | Msa0495620:CDS |
| AAGCAGAGCTAAGTATGGAA+TGG | 0.572661 | 3_4:+25119199 | None:intergenic |
| TGTTCTGAGAATTTGTGCAA+TGG | 0.574231 | 3_4:+25116294 | None:intergenic |
| TACCCTCCAATGCCTACAAG+AGG | 0.574344 | 3_4:-25117538 | Msa0495620:intron |
| GTAGGATCTTCTTGAACACC+AGG | 0.574842 | 3_4:+25117601 | None:intergenic |
| AGCTTTAAACTTGAAACTCA+CGG | 0.576730 | 3_4:+25116129 | None:intergenic |
| AGACTATACAATGTTTGCAA+AGG | 0.576811 | 3_4:+25117691 | None:intergenic |
| GGAACACATGCTGTGAGGCT+AGG | 0.578100 | 3_4:-25117847 | Msa0495620:CDS |
| GCATGTGTTCCATGAGTCAC+CGG | 0.580993 | 3_4:+25117859 | None:intergenic |
| GATCTCTACTCACCACTCCC+TGG | 0.582407 | 3_4:-25116421 | Msa0495620:CDS |
| TCGATGATCCAACCAGGGAG+TGG | 0.586201 | 3_4:+25116409 | None:intergenic |
| TACCTCTTGTAGGCATTGGA+GGG | 0.588583 | 3_4:+25117536 | None:intergenic |
| ATAGCAATTGCATCAAGAAG+TGG | 0.589206 | 3_4:+25117571 | None:intergenic |
| GAACTTGAAAGAGTGTGAAG+AGG | 0.604452 | 3_4:+25119157 | None:intergenic |
| TCAAGAAGTGGACCACAAGT+AGG | 0.610501 | 3_4:+25117583 | None:intergenic |
| AAGTTCCATTTAAATCCGAA+GGG | 0.616315 | 3_4:-25116168 | Msa0495620:CDS |
| AGAGACTCGATGATCCAACC+AGG | 0.627050 | 3_4:+25116403 | None:intergenic |
| TAGGTCTTGTTTGAATTGTG+GGG | 0.633979 | 3_4:-25115815 | Msa0495620:three_prime_UTR |
| GATGATTATGGCTCTCTCTG+TGG | 0.637773 | 3_4:-25116052 | Msa0495620:CDS |
| TGGTTGTCATGGATCAATGA+TGG | 0.645175 | 3_4:-25116221 | Msa0495620:CDS |
| GTTCAAGAAGATCCTACTTG+TGG | 0.647438 | 3_4:-25117595 | Msa0495620:CDS |
| AATGGTGATGTTATTGCATG+GGG | 0.650399 | 3_4:-25117667 | Msa0495620:CDS |
| AGTTTAAAGCTATCGCACCA+AGG | 0.662461 | 3_4:-25116117 | Msa0495620:CDS |
| GGTTTGGTAGAGTATGTGAC+TGG | 0.663787 | 3_4:-25117910 | Msa0495620:CDS |
| TTGGTAGAGTATGTGACTGG+TGG | 0.665537 | 3_4:-25117907 | Msa0495620:CDS |
| CTTCAGCCTAGAATACCAGA+AGG | 0.676116 | 3_4:-25119066 | Msa0495620:intron |
| AAATTCATATTTAAGCCACA+GGG | 0.678492 | 3_4:+25116002 | None:intergenic |
| TCAATGGTGATGTTATTGCA+TGG | 0.678740 | 3_4:-25117669 | Msa0495620:CDS |
| GGAACATCACCAGTTTGTGG+TGG | 0.691615 | 3_4:+25117712 | None:intergenic |
| ACTCTTTCAAGTTCCAATGG+CGG | 0.698046 | 3_4:-25119148 | Msa0495620:exon |
| TCAGGTTATAGTGTCCCCTG+TGG | 0.698590 | 3_4:-25116017 | Msa0495620:CDS |
| TAGGATCTTCTTGAACACCA+GGG | 0.704341 | 3_4:+25117602 | None:intergenic |
| TGGTGGGAGTAAAACACCGT+TGG | 0.711037 | 3_4:+25116453 | None:intergenic |
| CTCATGGAACACATGCTGTG+AGG | 0.712106 | 3_4:-25117852 | Msa0495620:CDS |
| AATTCATATTTAAGCCACAG+GGG | 0.736491 | 3_4:+25116003 | None:intergenic |
| ACTGGTGGTCCTCAACCAGG+AGG | 0.747255 | 3_4:-25117892 | Msa0495620:CDS |
| GAGACTCGATGATCCAACCA+GGG | 0.750509 | 3_4:+25116404 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATATCAAAATGAAA+GGG | + | chr3_4:25116076-25116095 | None:intergenic | 10.0% |
| !! | GTTATATATATCAAAATGAA+AGG | + | chr3_4:25116077-25116096 | None:intergenic | 15.0% |
| !!! | TTTTTTATTATACTTTGATG+TGG | - | chr3_4:25116421-25116440 | Msa0495620:CDS | 15.0% |
| !! | TTCTTTATGTTTCAAAAAAT+AGG | - | chr3_4:25119264-25119283 | Msa0495620:five_prime_UTR | 15.0% |
| !! | TCATTTCTTGTAAAAAATTG+TGG | - | chr3_4:25116466-25116485 | Msa0495620:CDS | 20.0% |
| !!! | ATTTGTTAGTACTTTTTATG+AGG | - | chr3_4:25116590-25116609 | Msa0495620:intron | 20.0% |
| !! | TTATTCTCTCAAATTACTAT+CGG | + | chr3_4:25116824-25116843 | None:intergenic | 20.0% |
| !! | TTCAATTTCTCAAACAATTA+AGG | - | chr3_4:25117283-25117302 | Msa0495620:intron | 20.0% |
| !!! | ACTTGATAAGAACTTTTTTT+TGG | - | chr3_4:25117934-25117953 | Msa0495620:CDS | 20.0% |
| !! | AAAAATCTTATACTAACTGA+TGG | - | chr3_4:25117987-25118006 | Msa0495620:CDS | 20.0% |
| !!! | ATTAATGAATTTTCAGATGA+AGG | - | chr3_4:25118058-25118077 | Msa0495620:intron | 20.0% |
| !! | ACCAAAAAAATGAATTGAAA+AGG | - | chr3_4:25118178-25118197 | Msa0495620:intron | 20.0% |
| !! | CCAAAAAAATGAATTGAAAA+GGG | - | chr3_4:25118179-25118198 | Msa0495620:intron | 20.0% |
| !! | CAAAAAAATGAATTGAAAAG+GGG | - | chr3_4:25118180-25118199 | Msa0495620:intron | 20.0% |
| !!! | ATCGACTTCAAATATTTATT+TGG | - | chr3_4:25118223-25118242 | Msa0495620:intron | 20.0% |
| !!! | ATAATCATTAATGGCTTTAT+CGG | + | chr3_4:25118556-25118575 | None:intergenic | 20.0% |
| !!! | AGTTATAGAGTTTTAATGTA+AGG | - | chr3_4:25119120-25119139 | Msa0495620:CDS | 20.0% |
| !! | TTTTTATATTGGAGAGAGAA+GGG | + | chr3_4:25115838-25115857 | None:intergenic | 25.0% |
| ! | TTATTTGTTTCACATTGTTC+AGG | - | chr3_4:25116167-25116186 | Msa0495620:CDS | 25.0% |
| ! | AAAAGTTAGCTCAAAAGATA+AGG | + | chr3_4:25116231-25116250 | None:intergenic | 25.0% |
| ! | AAAACAACTCATCTAAATGA+AGG | + | chr3_4:25116355-25116374 | None:intergenic | 25.0% |
| ! | TGAACAAAGTTTCAATTTCT+TGG | - | chr3_4:25116651-25116670 | Msa0495620:intron | 25.0% |
| ! | ATCTATGTAATCATATGTGT+CGG | - | chr3_4:25116846-25116865 | Msa0495620:intron | 25.0% |
| ! | TTTGCAGTTTATCTTCAAAA+TGG | - | chr3_4:25117080-25117099 | Msa0495620:intron | 25.0% |
| !! | AAAATTTTCCCTACCAAAAT+GGG | - | chr3_4:25117157-25117176 | Msa0495620:intron | 25.0% |
| ! | AGTATTTAACAAAACTGATG+TGG | + | chr3_4:25117599-25117618 | None:intergenic | 25.0% |
| ! | ATGTCAAATAGTAACTATAG+TGG | - | chr3_4:25117811-25117830 | Msa0495620:CDS | 25.0% |
| ! | TCTACATAATTGAACTTAAC+AGG | - | chr3_4:25117910-25117929 | Msa0495620:CDS | 25.0% |
| !!! | CCCTTTTCAATTCATTTTTT+TGG | + | chr3_4:25118182-25118201 | None:intergenic | 25.0% |
| ! | GCAAAAAAACATACATTTGA+GGG | + | chr3_4:25118250-25118269 | None:intergenic | 25.0% |
| ! | TGCAAAAAAACATACATTTG+AGG | + | chr3_4:25118251-25118270 | None:intergenic | 25.0% |
| ! | ATGGTTACATTCAATCATTT+CGG | + | chr3_4:25118425-25118444 | None:intergenic | 25.0% |
| !! | TATGATCTTAGCATTTCTTT+TGG | - | chr3_4:25118502-25118521 | Msa0495620:intron | 25.0% |
| ! | GATAAAGCCATTAATGATTA+TGG | - | chr3_4:25118555-25118574 | Msa0495620:intron | 25.0% |
| ! | CAATAGACCATAATCATTAA+TGG | + | chr3_4:25118565-25118584 | None:intergenic | 25.0% |
| ! | AAATTCATATTTAAGCCACA+GGG | + | chr3_4:25119099-25119118 | None:intergenic | 25.0% |
| !!! | TAGAGTTTTAATGTAAGGTA+TGG | - | chr3_4:25119125-25119144 | Msa0495620:CDS | 25.0% |
| !! | TTTGAAACATAAAGAAGAAC+AGG | + | chr3_4:25119260-25119279 | None:intergenic | 25.0% |
| ! | GTTTTTATATTGGAGAGAGA+AGG | + | chr3_4:25115839-25115858 | None:intergenic | 30.0% |
| AGATAGATAGATAGATAGAG+AGG | + | chr3_4:25115870-25115889 | None:intergenic | 30.0% | |
| ! | CAGAATCATTCGATACATTT+TGG | - | chr3_4:25116275-25116294 | Msa0495620:CDS | 30.0% |
| ! | TCTAAATGAAGGTACATGAA+AGG | + | chr3_4:25116344-25116363 | None:intergenic | 30.0% |
| TTATACTTTGATGTGGTTGT+TGG | - | chr3_4:25116428-25116447 | Msa0495620:CDS | 30.0% | |
| !! | GCTTTAAGATCTGTCATTTA+TGG | - | chr3_4:25116492-25116511 | Msa0495620:CDS | 30.0% |
| ATTTATGGTGAAGTTTGAGT+GGG | - | chr3_4:25116507-25116526 | Msa0495620:CDS | 30.0% | |
| ! | ACAAATTTAGGGTCTCAAAT+AGG | + | chr3_4:25116725-25116744 | None:intergenic | 30.0% |
| ACAGACAATACTTCAACAAA+GGG | + | chr3_4:25116753-25116772 | None:intergenic | 30.0% | |
| AACAGACAATACTTCAACAA+AGG | + | chr3_4:25116754-25116773 | None:intergenic | 30.0% | |
| ! | TATATGTGCTTTGTAGGTTT+TGG | - | chr3_4:25116929-25116948 | Msa0495620:intron | 30.0% |
| !! | TGCTTTTTAACCAAGGAAAA+AGG | + | chr3_4:25116973-25116992 | None:intergenic | 30.0% |
| GATAAACTGCAAAGATAAGA+AGG | + | chr3_4:25117073-25117092 | None:intergenic | 30.0% | |
| TCTTCAAAATGGAAACTTTG+AGG | - | chr3_4:25117091-25117110 | Msa0495620:intron | 30.0% | |
| TGGTATTCTTTAGGTCTTTA+GGG | + | chr3_4:25117127-25117146 | None:intergenic | 30.0% | |
| TTGGTATTCTTTAGGTCTTT+AGG | + | chr3_4:25117128-25117147 | None:intergenic | 30.0% | |
| ! | GAAAATTTTCCCTACCAAAA+TGG | - | chr3_4:25117156-25117175 | Msa0495620:intron | 30.0% |
| !! | ATTGATTTCCCATTTTGGTA+GGG | + | chr3_4:25117168-25117187 | None:intergenic | 30.0% |
| !!! | AAACCATTGATTTCCCATTT+TGG | + | chr3_4:25117173-25117192 | None:intergenic | 30.0% |
| AAAATGGGAAATCAATGGTT+TGG | - | chr3_4:25117172-25117191 | Msa0495620:intron | 30.0% | |
| CAACTCTATGCTTTAATTCT+TGG | - | chr3_4:25117317-25117336 | Msa0495620:intron | 30.0% | |
| AGACTATACAATGTTTGCAA+AGG | + | chr3_4:25117410-25117429 | None:intergenic | 30.0% | |
| CAAACATTGTATAGTCTCAA+TGG | - | chr3_4:25117413-25117432 | Msa0495620:intron | 30.0% | |
| TATGTTTCATTACCTCTTGT+AGG | + | chr3_4:25117575-25117594 | None:intergenic | 30.0% | |
| ACAAGCACTAAATAGCATAT+TGG | + | chr3_4:25117663-25117682 | None:intergenic | 30.0% | |
| TTAGTGCTTGTTTGATATCA+TGG | - | chr3_4:25117672-25117691 | Msa0495620:CDS | 30.0% | |
| ATATGATAGACCAAAGAACA+TGG | + | chr3_4:25118090-25118109 | None:intergenic | 30.0% | |
| !! | TTGCTAACGTTTCTTTTTCA+TGG | - | chr3_4:25118154-25118173 | Msa0495620:intron | 30.0% |
| !! | AAAAGAGTTGCGCTTTTTAA+TGG | - | chr3_4:25118291-25118310 | Msa0495620:intron | 30.0% |
| CTATTTAGTAATTCCCTTGA+AGG | - | chr3_4:25118340-25118359 | Msa0495620:intron | 30.0% | |
| ATGGTCTATTGCAGTTAATT+TGG | - | chr3_4:25118574-25118593 | Msa0495620:intron | 30.0% | |
| !! | AAAAATCCTAGCTTTGAAGA+GGG | - | chr3_4:25118599-25118618 | Msa0495620:intron | 30.0% |
| AAAGTTCCATTTAAATCCGA+AGG | - | chr3_4:25118929-25118948 | Msa0495620:intron | 30.0% | |
| AAGTTCCATTTAAATCCGAA+GGG | - | chr3_4:25118930-25118949 | Msa0495620:intron | 30.0% | |
| !! | AGCTTTAAACTTGAAACTCA+CGG | + | chr3_4:25118972-25118991 | None:intergenic | 30.0% |
| CATACAAGAATCGATGATTA+TGG | - | chr3_4:25119034-25119053 | Msa0495620:intron | 30.0% | |
| AATTCATATTTAAGCCACAG+GGG | + | chr3_4:25119098-25119117 | None:intergenic | 30.0% | |
| CAAATTCATATTTAAGCCAC+AGG | + | chr3_4:25119100-25119119 | None:intergenic | 30.0% | |
| !! | GTTTTAATGTAAGGTATGGT+TGG | - | chr3_4:25119129-25119148 | Msa0495620:CDS | 30.0% |
| !! | AATAGGTCTTGTTTGAATTG+TGG | - | chr3_4:25119281-25119300 | Msa0495620:five_prime_UTR | 30.0% |
| !! | ATAGGTCTTGTTTGAATTGT+GGG | - | chr3_4:25119282-25119301 | Msa0495620:five_prime_UTR | 30.0% |
| AGAGAGAAGGGAAATTATGA+TGG | + | chr3_4:25115826-25115845 | None:intergenic | 35.0% | |
| !!! | GGTTGGGTTGGTTTTTATAT+TGG | + | chr3_4:25115849-25115868 | None:intergenic | 35.0% |
| GATAGATAGATAGAGAGGTT+GGG | + | chr3_4:25115865-25115884 | None:intergenic | 35.0% | |
| AGATAGATAGATAGAGAGGT+TGG | + | chr3_4:25115866-25115885 | None:intergenic | 35.0% | |
| ! | AACTTGAAAGAGTGTGAAGA+GGG | + | chr3_4:25115943-25115962 | None:intergenic | 35.0% |
| CATTTATGGTGAAGTTTGAG+TGG | - | chr3_4:25116506-25116525 | Msa0495620:CDS | 35.0% | |
| ! | AAAGGGGTGCAACAAATTTA+GGG | + | chr3_4:25116736-25116755 | None:intergenic | 35.0% |
| CAGACAATACTTCAACAAAG+GGG | + | chr3_4:25116752-25116771 | None:intergenic | 35.0% | |
| TACAAAGCACATATACTCAG+CGG | + | chr3_4:25116924-25116943 | None:intergenic | 35.0% | |
| ! | GAACAAGATCTGAAGTTGTT+TGG | - | chr3_4:25117032-25117051 | Msa0495620:intron | 35.0% |
| !! | TTCTTTAGGTCTTTAGGGTT+TGG | + | chr3_4:25117122-25117141 | None:intergenic | 35.0% |
| CAATGAGCTTGGTATTCTTT+AGG | + | chr3_4:25117136-25117155 | None:intergenic | 35.0% | |
| CTAAAGAATACCAAGCTCAT+TGG | - | chr3_4:25117134-25117153 | Msa0495620:intron | 35.0% | |
| ! | GGAAAATTTTCCAATGAGCT+TGG | + | chr3_4:25117147-25117166 | None:intergenic | 35.0% |
| !!! | CATTGATTTCCCATTTTGGT+AGG | + | chr3_4:25117169-25117188 | None:intergenic | 35.0% |
| CTACCAAAATGGGAAATCAA+TGG | - | chr3_4:25117167-25117186 | Msa0495620:intron | 35.0% | |
| CAAACAATTAAGGTCAAACC+TGG | - | chr3_4:25117293-25117312 | Msa0495620:intron | 35.0% | |
| ATTAAAGCATAGAGTTGACC+AGG | + | chr3_4:25117314-25117333 | None:intergenic | 35.0% | |
| ! | CTTTAATTCTTGGTGCATCA+AGG | - | chr3_4:25117327-25117346 | Msa0495620:intron | 35.0% |
| ! | TCAATGGTGATGTTATTGCA+TGG | - | chr3_4:25117429-25117448 | Msa0495620:intron | 35.0% |
| ! | CAATGGTGATGTTATTGCAT+GGG | - | chr3_4:25117430-25117449 | Msa0495620:intron | 35.0% |
| ! | AATGGTGATGTTATTGCATG+GGG | - | chr3_4:25117431-25117450 | Msa0495620:intron | 35.0% |
| ! | AAAGTGACTTTTCATAACCC+TGG | - | chr3_4:25117479-25117498 | Msa0495620:intron | 35.0% |
| ATAGCAATTGCATCAAGAAG+TGG | + | chr3_4:25117530-25117549 | None:intergenic | 35.0% | |
| TTGTAGCTTCGACAAAATCA+TGG | - | chr3_4:25117730-25117749 | Msa0495620:CDS | 35.0% | |
| TGTAGAATCCTAGAAGTGAA+GGG | + | chr3_4:25117896-25117915 | None:intergenic | 35.0% | |
| ATGTAGAATCCTAGAAGTGA+AGG | + | chr3_4:25117897-25117916 | None:intergenic | 35.0% | |
| ! | AAGGTTGTTTCCATGTTCTT+TGG | - | chr3_4:25118077-25118096 | Msa0495620:intron | 35.0% |
| ! | TGAAAAGGGGAGTATGTATT+TGG | - | chr3_4:25118193-25118212 | Msa0495620:intron | 35.0% |
| !! | GCAACTCTTTTAAGTGTGTT+TGG | + | chr3_4:25118282-25118301 | None:intergenic | 35.0% |
| GTAATTCCCTTGAAGGATAT+TGG | - | chr3_4:25118347-25118366 | Msa0495620:intron | 35.0% | |
| AAGGATCCAATATCCTTCAA+GGG | + | chr3_4:25118356-25118375 | None:intergenic | 35.0% | |
| TAAGGATCCAATATCCTTCA+AGG | + | chr3_4:25118357-25118376 | None:intergenic | 35.0% | |
| GATTGAATGTAACCATGTGT+TGG | - | chr3_4:25118429-25118448 | Msa0495620:intron | 35.0% | |
| ! | TTTTGTAGCACTAACACTTC+AGG | + | chr3_4:25118482-25118501 | None:intergenic | 35.0% |
| !! | GAAAAATCCTAGCTTTGAAG+AGG | - | chr3_4:25118598-25118617 | Msa0495620:intron | 35.0% |
| !! | GTTGAGTTGAAAATTGGGAA+TGG | + | chr3_4:25118626-25118645 | None:intergenic | 35.0% |
| !! | CGTTGGTTGAGTTGAAAATT+GGG | + | chr3_4:25118631-25118650 | None:intergenic | 35.0% |
| ! | CCAATTTTCAACTCAACCAA+CGG | - | chr3_4:25118629-25118648 | Msa0495620:intron | 35.0% |
| AAGCATTTCAATGTCCCATT+CGG | - | chr3_4:25118743-25118762 | Msa0495620:intron | 35.0% | |
| !! | TGTTCTGAGAATTTGTGCAA+TGG | + | chr3_4:25118807-25118826 | None:intergenic | 35.0% |
| TACAAGATCACATTCTCAGT+TGG | - | chr3_4:25118842-25118861 | Msa0495620:intron | 35.0% | |
| TATGAATTTACCCTTCCCTT+CGG | + | chr3_4:25118948-25118967 | None:intergenic | 35.0% | |
| ACTATAACCTGATCAAGAAC+AGG | + | chr3_4:25119073-25119092 | None:intergenic | 35.0% | |
| ! | TTTTGCAAGTCTTTTGAGCT+TGG | - | chr3_4:25119162-25119181 | Msa0495620:five_prime_UTR | 35.0% |
| ACAGGCAAGAGAAATCTTAA+AGG | + | chr3_4:25119242-25119261 | None:intergenic | 35.0% | |
| !! | TAGGTCTTGTTTGAATTGTG+GGG | - | chr3_4:25119283-25119302 | Msa0495620:five_prime_UTR | 35.0% |
| AAGCAGAGCTAAGTATGGAA+TGG | + | chr3_4:25115902-25115921 | None:intergenic | 40.0% | |
| TGGAAAAGCAGAGCTAAGTA+TGG | + | chr3_4:25115907-25115926 | None:intergenic | 40.0% | |
| ! | GAACTTGAAAGAGTGTGAAG+AGG | + | chr3_4:25115944-25115963 | None:intergenic | 40.0% |
| !! | CACACTCTTTCAAGTTCCAA+TGG | - | chr3_4:25115947-25115966 | Msa0495620:three_prime_UTR | 40.0% |
| !! | ACTCTTTCAAGTTCCAATGG+CGG | - | chr3_4:25115950-25115969 | Msa0495620:three_prime_UTR | 40.0% |
| GTGTTACCTTCTGGTATTCT+AGG | + | chr3_4:25116041-25116060 | None:intergenic | 40.0% | |
| TAGATGTGTGTGTTACCTTC+TGG | + | chr3_4:25116050-25116069 | None:intergenic | 40.0% | |
| GTTTCACATTGTTCAGGTGT+CGG | - | chr3_4:25116173-25116192 | Msa0495620:CDS | 40.0% | |
| ! | TGGTTGTTGGAGTCACTTTA+TGG | - | chr3_4:25116441-25116460 | Msa0495620:CDS | 40.0% |
| ! | GGTTGTTGGAGTCACTTTAT+GGG | - | chr3_4:25116442-25116461 | Msa0495620:CDS | 40.0% |
| GGTAAGCAAGATAGATACTG+TGG | - | chr3_4:25116528-25116547 | Msa0495620:intron | 40.0% | |
| AGCAAGATAGATACTGTGGT+TGG | - | chr3_4:25116532-25116551 | Msa0495620:intron | 40.0% | |
| ! | CAAAGGGGTGCAACAAATTT+AGG | + | chr3_4:25116737-25116756 | None:intergenic | 40.0% |
| !! | CACATATACTCAGCGGATTA+GGG | + | chr3_4:25116917-25116936 | None:intergenic | 40.0% |
| GCTGAGTATATGTGCTTTGT+AGG | - | chr3_4:25116923-25116942 | Msa0495620:intron | 40.0% | |
| ! | AGTCTTTACGCCTTTTTCCT+TGG | - | chr3_4:25116960-25116979 | Msa0495620:intron | 40.0% |
| !!! | CCAAGGTTGCTTTTTAACCA+AGG | + | chr3_4:25116980-25116999 | None:intergenic | 40.0% |
| CCTTGGTTAAAAAGCAACCT+TGG | - | chr3_4:25116977-25116996 | Msa0495620:intron | 40.0% | |
| CAACCTTGGTTGAAGAGAAT+GGG | - | chr3_4:25116991-25117010 | Msa0495620:intron | 40.0% | |
| !!! | ATGTTTTTTCCGGTGACTCA+TGG | - | chr3_4:25117230-25117249 | Msa0495620:intron | 40.0% |
| AAAGGAACATCACCAGTTTG+TGG | + | chr3_4:25117392-25117411 | None:intergenic | 40.0% | |
| TAGGATCTTCTTGAACACCA+GGG | + | chr3_4:25117499-25117518 | None:intergenic | 40.0% | |
| GTTCAAGAAGATCCTACTTG+TGG | - | chr3_4:25117503-25117522 | Msa0495620:intron | 40.0% | |
| TCATTACCTCTTGTAGGCAT+TGG | + | chr3_4:25117569-25117588 | None:intergenic | 40.0% | |
| TAGCTTCGACAAAATCATGG+TGG | - | chr3_4:25117733-25117752 | Msa0495620:CDS | 40.0% | |
| CTATCAGTTCTCCACTACTT+AGG | - | chr3_4:25118012-25118031 | Msa0495620:CDS | 40.0% | |
| CACATAACACACCTAAGTAG+TGG | + | chr3_4:25118026-25118045 | None:intergenic | 40.0% | |
| CACTACTTAGGTGTGTTATG+TGG | - | chr3_4:25118024-25118043 | Msa0495620:intron | 40.0% | |
| ! | AAGGGGAGTATGTATTTGGT+TGG | - | chr3_4:25118197-25118216 | Msa0495620:intron | 40.0% |
| GATCCTTACCTATGAAGCAT+AGG | - | chr3_4:25118369-25118388 | Msa0495620:intron | 40.0% | |
| TGTATGTGCCTATGCTTCAT+AGG | + | chr3_4:25118380-25118399 | None:intergenic | 40.0% | |
| !! | CCGTTGGTTGAGTTGAAAAT+TGG | + | chr3_4:25118632-25118651 | None:intergenic | 40.0% |
| ! | AGAGATCTTCTTGTTGTGGT+GGG | + | chr3_4:25118664-25118683 | None:intergenic | 40.0% |
| ! | TAGAGATCTTCTTGTTGTGG+TGG | + | chr3_4:25118665-25118684 | None:intergenic | 40.0% |
| GAGTAGAGATCTTCTTGTTG+TGG | + | chr3_4:25118668-25118687 | None:intergenic | 40.0% | |
| TGGTTGTCATGGATCAATGA+TGG | - | chr3_4:25118877-25118896 | Msa0495620:intron | 40.0% | |
| TCCATTTAAATCCGAAGGGA+AGG | - | chr3_4:25118934-25118953 | Msa0495620:intron | 40.0% | |
| CCATTTAAATCCGAAGGGAA+GGG | - | chr3_4:25118935-25118954 | Msa0495620:intron | 40.0% | |
| ! | AGTTTAAAGCTATCGCACCA+AGG | - | chr3_4:25118981-25119000 | Msa0495620:intron | 40.0% |
| TAGAATGTGAGTCTAGTCCT+TGG | + | chr3_4:25119001-25119020 | None:intergenic | 40.0% | |
| GATAGATAGAGAGGTTGGGT+TGG | + | chr3_4:25115861-25115880 | None:intergenic | 45.0% | |
| !!! | AAGAGGGTTTGGTTTTGCTC+TGG | + | chr3_4:25115927-25115946 | None:intergenic | 45.0% |
| ! | GAAAGAGTGTGAAGAGGGTT+TGG | + | chr3_4:25115938-25115957 | None:intergenic | 45.0% |
| CTTCAGCCTAGAATACCAGA+AGG | - | chr3_4:25116032-25116051 | Msa0495620:CDS | 45.0% | |
| CATGATATCTATCCGACACC+AGG | - | chr3_4:25116888-25116907 | Msa0495620:intron | 45.0% | |
| ! | GCACATATACTCAGCGGATT+AGG | + | chr3_4:25116918-25116937 | None:intergenic | 45.0% |
| GCAACCTTGGTTGAAGAGAA+TGG | - | chr3_4:25116990-25117009 | Msa0495620:intron | 45.0% | |
| TCTCCCATTCTCTTCAACCA+AGG | + | chr3_4:25116997-25117016 | None:intergenic | 45.0% | |
| GAAGAGAATGGGAGACTTTC+TGG | - | chr3_4:25117002-25117021 | Msa0495620:intron | 45.0% | |
| ! | GGTTTGGTAGAGTATGTGAC+TGG | - | chr3_4:25117188-25117207 | Msa0495620:intron | 45.0% |
| TTGGTAGAGTATGTGACTGG+TGG | - | chr3_4:25117191-25117210 | Msa0495620:intron | 45.0% | |
| AAAAACATGCCTCCTGGTTG+AGG | + | chr3_4:25117218-25117237 | None:intergenic | 45.0% | |
| !!! | ACCAGGAGGCATGTTTTTTC+CGG | - | chr3_4:25117220-25117239 | Msa0495620:intron | 45.0% |
| GTAGGATCTTCTTGAACACC+AGG | + | chr3_4:25117500-25117519 | None:intergenic | 45.0% | |
| TCAAGAAGTGGACCACAAGT+AGG | + | chr3_4:25117518-25117537 | None:intergenic | 45.0% | |
| !! | TACCTCTTGTAGGCATTGGA+GGG | + | chr3_4:25117565-25117584 | None:intergenic | 45.0% |
| !! | TTACCTCTTGTAGGCATTGG+AGG | + | chr3_4:25117566-25117585 | None:intergenic | 45.0% |
| TCATGGTGAGTTTGACACTG+TGG | - | chr3_4:25117689-25117708 | Msa0495620:CDS | 45.0% | |
| CAAGTGTGTGTCCTGTATCA+CGG | + | chr3_4:25117781-25117800 | None:intergenic | 45.0% | |
| TAGGCATGGTATGTGCATCA+GGG | + | chr3_4:25117871-25117890 | None:intergenic | 45.0% | |
| ATAGGCATGGTATGTGCATC+AGG | + | chr3_4:25117872-25117891 | None:intergenic | 45.0% | |
| ! | ATCCTAGAAGTGAAGGGCAT+AGG | + | chr3_4:25117890-25117909 | None:intergenic | 45.0% |
| GTGCCTATGCTTCATAGGTA+AGG | + | chr3_4:25118375-25118394 | None:intergenic | 45.0% | |
| AATGGACCCTCTTCAAAGCT+AGG | + | chr3_4:25118608-25118627 | None:intergenic | 45.0% | |
| TTCAATGTCCCATTCGGACT+TGG | - | chr3_4:25118749-25118768 | Msa0495620:intron | 45.0% | |
| TCAGTTGGAGACGCGAAAAA+TGG | - | chr3_4:25118857-25118876 | Msa0495620:intron | 45.0% | |
| GACGCGAAAAATGGTTGTCA+TGG | - | chr3_4:25118866-25118885 | Msa0495620:intron | 45.0% | |
| CCCTTCCCTTCGGATTTAAA+TGG | + | chr3_4:25118938-25118957 | None:intergenic | 45.0% | |
| GATGATTATGGCTCTCTCTG+TGG | - | chr3_4:25119046-25119065 | Msa0495620:intron | 45.0% | |
| !! | AAAGTATAATAAAAAAAAAA+AGG | + | chr3_4:25116417-25116436 | None:intergenic | 5.0% |
| GAAAAGAGAGACACCGCCAT+TGG | + | chr3_4:25115966-25115985 | None:intergenic | 50.0% | |
| CGACATGTCTGTATCGTGTC+TGG | + | chr3_4:25116798-25116817 | None:intergenic | 50.0% | |
| !! | GTCGGTGTTGTGTCATGTGT+CGG | - | chr3_4:25116864-25116883 | Msa0495620:intron | 50.0% |
| ! | TGGGAGACTTTCTGGTGTAC+TGG | - | chr3_4:25117010-25117029 | Msa0495620:intron | 50.0% |
| ACCGGAAAAAACATGCCTCC+TGG | + | chr3_4:25117224-25117243 | None:intergenic | 50.0% | |
| GCATGTGTTCCATGAGTCAC+CGG | + | chr3_4:25117242-25117261 | None:intergenic | 50.0% | |
| CTCATGGAACACATGCTGTG+AGG | - | chr3_4:25117246-25117265 | Msa0495620:intron | 50.0% | |
| ATCTCTGTGCCACCACAAAC+TGG | - | chr3_4:25117377-25117396 | Msa0495620:intron | 50.0% | |
| GGAACATCACCAGTTTGTGG+TGG | + | chr3_4:25117389-25117408 | None:intergenic | 50.0% | |
| TACCCTCCAATGCCTACAAG+AGG | - | chr3_4:25117560-25117579 | Msa0495620:CDS | 50.0% | |
| TGTGTGTCCTGTATCACGGT+GGG | + | chr3_4:25117777-25117796 | None:intergenic | 50.0% | |
| CGTGATACAGGACACACACT+TGG | - | chr3_4:25117779-25117798 | Msa0495620:CDS | 50.0% | |
| ! | AGAAGTGAAGGGCATAGGCA+TGG | + | chr3_4:25117885-25117904 | None:intergenic | 50.0% |
| TGCCTATGCCCTTCACTTCT+AGG | - | chr3_4:25117885-25117904 | Msa0495620:CDS | 50.0% | |
| !! | ACCATGTGTTGGTGTCGTGT+CGG | - | chr3_4:25118440-25118459 | Msa0495620:intron | 50.0% |
| TGGTGGGAGTAAAACACCGT+TGG | + | chr3_4:25118648-25118667 | None:intergenic | 50.0% | |
| GAGACTCGATGATCCAACCA+GGG | + | chr3_4:25118697-25118716 | None:intergenic | 50.0% | |
| AGAGACTCGATGATCCAACC+AGG | + | chr3_4:25118698-25118717 | None:intergenic | 50.0% | |
| CTGTGGTCCTGTTCTTGATC+AGG | - | chr3_4:25119063-25119082 | Msa0495620:intron | 50.0% | |
| TCAGGTTATAGTGTCCCCTG+TGG | - | chr3_4:25119081-25119100 | Msa0495620:CDS | 50.0% | |
| ! | GGATTAGGGTGTCCTGGTGT+CGG | + | chr3_4:25116903-25116922 | None:intergenic | 55.0% |
| GGAACACATGCTGTGAGGCT+AGG | - | chr3_4:25117251-25117270 | Msa0495620:intron | 55.0% | |
| TGTCCAACCCACCGTGATAC+AGG | - | chr3_4:25117767-25117786 | Msa0495620:CDS | 55.0% | |
| TGTCCTGTATCACGGTGGGT+TGG | + | chr3_4:25117773-25117792 | None:intergenic | 55.0% | |
| GTGTGTGTCCTGTATCACGG+TGG | + | chr3_4:25117778-25117797 | None:intergenic | 55.0% | |
| TCCGACACGACACCAACACA+TGG | + | chr3_4:25118444-25118463 | None:intergenic | 55.0% | |
| !! | TGTGTTGGTGTCGTGTCGGA+TGG | - | chr3_4:25118444-25118463 | Msa0495620:intron | 55.0% |
| GATCTCTACTCACCACTCCC+TGG | - | chr3_4:25118677-25118696 | Msa0495620:intron | 55.0% | |
| TCTACTCACCACTCCCTGGT+TGG | - | chr3_4:25118681-25118700 | Msa0495620:intron | 55.0% | |
| TCGATGATCCAACCAGGGAG+TGG | + | chr3_4:25118692-25118711 | None:intergenic | 55.0% | |
| CGACTGCTCCAAGTCCGAAT+GGG | + | chr3_4:25118760-25118779 | None:intergenic | 55.0% | |
| TCGACTGCTCCAAGTCCGAA+TGG | + | chr3_4:25118761-25118780 | None:intergenic | 55.0% | |
| TGCAATGGCGCTTTCTCTGC+CGG | + | chr3_4:25118792-25118811 | None:intergenic | 55.0% | |
| !! | CTCAGCGGATTAGGGTGTCC+TGG | + | chr3_4:25116909-25116928 | None:intergenic | 60.0% |
| GTGACTGGTGGTCCTCAACC+AGG | - | chr3_4:25117203-25117222 | Msa0495620:intron | 60.0% | |
| ACTGGTGGTCCTCAACCAGG+AGG | - | chr3_4:25117206-25117225 | Msa0495620:intron | 60.0% | |
| !! | GGAGCAGTCGAGCTTGTTGC+CGG | - | chr3_4:25118770-25118789 | Msa0495620:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 25115798 | 25119322 | 25115798 | ID=Msa0495620;Name=Msa0495620 |
| chr3_4 | mRNA | 25115798 | 25119322 | 25115798 | ID=Msa0495620-mRNA-1;Parent=Msa0495620;Name=Msa0495620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=168|1|1|1|1|1|3|214|367 |
| chr3_4 | exon | 25115798 | 25116532 | 25115798 | ID=Msa0495620-mRNA-1:exon:6067;Parent=Msa0495620-mRNA-1 |
| chr3_4 | exon | 25117539 | 25118033 | 25117539 | ID=Msa0495620-mRNA-1:exon:6066;Parent=Msa0495620-mRNA-1 |
| chr3_4 | exon | 25119067 | 25119322 | 25119067 | ID=Msa0495620-mRNA-1:exon:6065;Parent=Msa0495620-mRNA-1 |
| chr3_4 | five_prime_UTR | 25119155 | 25119322 | 25119155 | ID=Msa0495620-mRNA-1:five_prime_utr;Parent=Msa0495620-mRNA-1 |
| chr3_4 | CDS | 25119067 | 25119154 | 25119067 | ID=Msa0495620-mRNA-1:cds;Parent=Msa0495620-mRNA-1 |
| chr3_4 | CDS | 25117539 | 25118033 | 25117539 | ID=Msa0495620-mRNA-1:cds;Parent=Msa0495620-mRNA-1 |
| chr3_4 | CDS | 25116012 | 25116532 | 25116012 | ID=Msa0495620-mRNA-1:cds;Parent=Msa0495620-mRNA-1 |
| chr3_4 | three_prime_UTR | 25115798 | 25116011 | 25115798 | ID=Msa0495620-mRNA-1:three_prime_utr;Parent=Msa0495620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
