Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099580 | XP_013465878.1 | 86.179 | 369 | 46 | 3 | 1 | 366 | 1 | 367 | 1.20e-161 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099580 | sp|Q9LVK2|BIG1A_ARATH | 41.445 | 263 | 82 | 8 | 136 | 367 | 124 | 345 | 1.10e-32 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099580 | A0A072VD40 | 86.179 | 369 | 46 | 3 | 1 | 366 | 1 | 367 | 5.73e-162 | 467 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006470 | Msa0099580 | 0.800239 | 1.581939e-48 | -8.615850e-47 |
| Msa0099580 | Msa0148190 | 0.820630 | 6.195827e-53 | -8.615850e-47 |
| Msa0099580 | Msa0218480 | 0.813805 | 2.124904e-51 | -8.615850e-47 |
| Msa0099580 | Msa0218590 | 0.813412 | 2.593420e-51 | -8.615850e-47 |
| Msa0099580 | Msa0575540 | 0.800418 | 1.454455e-48 | -8.615850e-47 |
| Msa0099580 | Msa0578890 | 0.815376 | 9.540516e-52 | -8.615850e-47 |
| Msa0099580 | Msa0610850 | 0.824020 | 1.012163e-53 | -8.615850e-47 |
| Msa0099580 | Msa0641030 | 0.800310 | 1.530494e-48 | -8.615850e-47 |
| Msa0099580 | Msa0651340 | 0.806833 | 6.789127e-50 | -8.615850e-47 |
| Msa0099580 | Msa0930090 | 0.802815 | 4.689750e-49 | -8.615850e-47 |
| Msa0099580 | Msa1043540 | 0.985725 | 1.808108e-164 | -8.615850e-47 |
| Msa0099580 | Msa1055710 | 0.810854 | 9.368897e-51 | -8.615850e-47 |
| Msa0099580 | Msa1190460 | 0.803481 | 3.415193e-49 | -8.615850e-47 |
| Msa0099580 | Msa1192790 | 0.805383 | 1.370477e-49 | -8.615850e-47 |
| Msa0099580 | Msa1327400 | 0.808436 | 3.099650e-50 | -8.615850e-47 |
| Msa0099580 | Msa1327420 | 0.807704 | 4.438485e-50 | -8.615850e-47 |
| Msa0099580 | Msa1457070 | 0.800033 | 1.742569e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099580 | MtrunA17_Chr1g0150831 | 86.179 | 369 | 46 | 3 | 1 | 366 | 1 | 367 | 1.10e-165 | 467 |
| Msa0099580 | MtrunA17_Chr3g0136111 | 44.444 | 414 | 133 | 16 | 1 | 366 | 1 | 365 | 1.13e-54 | 184 |
| Msa0099580 | MtrunA17_Chr8g0343541 | 40.095 | 419 | 174 | 13 | 1 | 367 | 1 | 394 | 1.57e-33 | 128 |
| Msa0099580 | MtrunA17_Chr4g0070711 | 33.425 | 365 | 181 | 15 | 17 | 366 | 15 | 332 | 5.30e-21 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099580 | AT3G13980.1 | 41.445 | 263 | 82 | 8 | 136 | 367 | 124 | 345 | 1.12e-33 | 128 |
| Msa0099580 | AT1G54200.1 | 37.376 | 404 | 156 | 14 | 4 | 367 | 13 | 359 | 2.11e-33 | 127 |
| Msa0099580 | AT5G12050.1 | 32.746 | 397 | 172 | 13 | 16 | 364 | 7 | 356 | 1.87e-18 | 86.3 |
| Msa0099580 | AT3G42800.1 | 32.308 | 195 | 109 | 5 | 186 | 364 | 140 | 327 | 2.27e-13 | 70.9 |
Find 64 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCTTGTTCTAACCGGTTT+TGG | 0.272024 | 1_3:+5780972 | None:intergenic |
| ATCTGCTTCTTCGTCTTTGT+TGG | 0.273644 | 1_3:+5780690 | None:intergenic |
| CGTCGATGGAACGGTAAATT+TGG | 0.324003 | 1_3:+5781306 | None:intergenic |
| TCCGATACAGATTCATTATA+CGG | 0.335788 | 1_3:-5781035 | Msa0099580:CDS |
| CAAGCGTGTCGGCATCATTT+AGG | 0.345034 | 1_3:-5780956 | Msa0099580:CDS |
| TAGGCTTGAAAAGGAGAAAC+AGG | 0.345846 | 1_3:-5780937 | Msa0099580:CDS |
| CAGTTCTACCTCAATTTCTT+CGG | 0.371586 | 1_3:-5781084 | Msa0099580:CDS |
| TTGGATCATTTGAGTGTGTT+TGG | 0.380923 | 1_3:-5780354 | Msa0099580:CDS |
| TCTGTAAAATTTGGTTGTTT+CGG | 0.390011 | 1_3:+5781262 | None:intergenic |
| GGAAGAGGGTAGGGCTAAGG+TGG | 0.392720 | 1_3:-5780532 | Msa0099580:CDS |
| GCCGACACGCTTGTTCTAAC+CGG | 0.412919 | 1_3:+5780966 | None:intergenic |
| AGAGGGTAGGGCTAAGGTGG+AGG | 0.421619 | 1_3:-5780529 | Msa0099580:CDS |
| TTGTGGAGTGGAAGAGGGTA+GGG | 0.431294 | 1_3:-5780541 | Msa0099580:CDS |
| TAGGTGGAACTTTCTGTTGT+CGG | 0.435349 | 1_3:+5781136 | None:intergenic |
| GTTGATTTGTTTAAAATCGT+TGG | 0.437197 | 1_3:+5781230 | None:intergenic |
| AGTGGAAGAGGGTAGGGCTA+AGG | 0.442934 | 1_3:-5780535 | Msa0099580:CDS |
| CGTTCCACCTAGGCCAAAAC+CGG | 0.444322 | 1_3:-5780985 | Msa0099580:CDS |
| TGTGAGGAGCTTCCTGTGTA+TGG | 0.451538 | 1_3:-5780318 | Msa0099580:CDS |
| GTAAAATTTGGTTGTTTCGG+TGG | 0.460218 | 1_3:+5781265 | None:intergenic |
| ATTTCTTCGGATTCTAGCTC+CGG | 0.469115 | 1_3:-5781071 | Msa0099580:CDS |
| AACGGTAAATTTGGTCTAAG+AGG | 0.473989 | 1_3:+5781315 | None:intergenic |
| GGCATCATTTAGGCTTGAAA+AGG | 0.486316 | 1_3:-5780946 | Msa0099580:CDS |
| AAGAGGGTGGAAGAGAATGA+AGG | 0.489820 | 1_3:+5781332 | None:intergenic |
| TTTGTGGAGTGGAAGAGGGT+AGG | 0.496413 | 1_3:-5780542 | Msa0099580:CDS |
| TCTTCTTCTTGTTATAACAT+TGG | 0.508602 | 1_3:+5780478 | None:intergenic |
| ATCATTTCTACCACAAAATG+AGG | 0.508732 | 1_3:+5780581 | None:intergenic |
| AGGGGAATCACGATTTCGAC+AGG | 0.517336 | 1_3:-5780917 | Msa0099580:CDS |
| AGAAAATCACGGCGAGGAAG+CGG | 0.522094 | 1_3:-5780862 | Msa0099580:CDS |
| GTGAAGCAACCGATTTCGCC+AGG | 0.534045 | 1_3:-5780786 | Msa0099580:CDS |
| TGGTAGAAATGATTACAAAA+CGG | 0.535489 | 1_3:-5780571 | Msa0099580:CDS |
| AACTGAAGAACAGAGCATCT+TGG | 0.537118 | 1_3:+5781102 | None:intergenic |
| CGTCGTGCTTCGTTCCACCT+AGG | 0.539775 | 1_3:-5780995 | Msa0099580:CDS |
| CGAAGAAGCAGATGAACACA+TGG | 0.541264 | 1_3:-5780680 | Msa0099580:CDS |
| GCTAGAATCCGAAGAAATTG+AGG | 0.552801 | 1_3:+5781076 | None:intergenic |
| AGAGGGTGGAAGAGAATGAA+GGG | 0.557335 | 1_3:+5781333 | None:intergenic |
| TTTCTCCTACGTCGATGGAA+CGG | 0.562365 | 1_3:+5781297 | None:intergenic |
| TAATGAATCTGTATCGGAGG+AGG | 0.579684 | 1_3:+5781040 | None:intergenic |
| TCCGTATAATGAATCTGTAT+CGG | 0.585229 | 1_3:+5781034 | None:intergenic |
| AAGGGTTTATGAACCTCTCG+TGG | 0.590814 | 1_3:+5781351 | None:intergenic |
| TCTTCGGATTCTAGCTCCGG+TGG | 0.592579 | 1_3:-5781068 | Msa0099580:CDS |
| ACGGTAAATTTGGTCTAAGA+GGG | 0.594369 | 1_3:+5781316 | None:intergenic |
| ATCGGAGGAGGAGAATCCAC+CGG | 0.611196 | 1_3:+5781052 | None:intergenic |
| AATAAAGAACAAATCAAGAG+CGG | 0.611789 | 1_3:-5780835 | Msa0099580:CDS |
| AAACAAAGCACAGAAAATCA+CGG | 0.616367 | 1_3:-5780873 | Msa0099580:CDS |
| GTAAATTTGGTCTAAGAGGG+TGG | 0.617354 | 1_3:+5781319 | None:intergenic |
| TGAGTGTGTTTGGAGACAGT+AGG | 0.624040 | 1_3:-5780344 | Msa0099580:CDS |
| CTTGGTCGTGATCACGTAGG+TGG | 0.626477 | 1_3:+5781120 | None:intergenic |
| GAACACATGGGAGACTCACG+AGG | 0.626492 | 1_3:-5780667 | Msa0099580:CDS |
| AGGCTTGAAAAGGAGAAACA+GGG | 0.627580 | 1_3:-5780936 | Msa0099580:CDS |
| GGATGAAGATGATGATGATG+TGG | 0.631674 | 1_3:-5780406 | Msa0099580:CDS |
| TGGAGACAGTAGGTATTGTG+AGG | 0.635390 | 1_3:-5780334 | Msa0099580:CDS |
| CGAAGAAGCAGATGAACACG+TGG | 0.648153 | 1_3:+5780632 | None:intergenic |
| ACCGGTTAGAACAAGCGTGT+CGG | 0.655186 | 1_3:-5780967 | Msa0099580:CDS |
| GGCTTGAAAAGGAGAAACAG+GGG | 0.655509 | 1_3:-5780935 | Msa0099580:CDS |
| ATTTCTACCACAAAATGAGG+CGG | 0.655870 | 1_3:+5780584 | None:intergenic |
| AAGCAACCGATTTCGCCAGG+TGG | 0.662604 | 1_3:-5780783 | Msa0099580:CDS |
| ATTTACCGTTCCATCGACGT+AGG | 0.667081 | 1_3:-5781302 | Msa0099580:CDS |
| GTATAATGAATCTGTATCGG+AGG | 0.669558 | 1_3:+5781037 | None:intergenic |
| ACACGAGTAGTTCCATACAC+AGG | 0.691654 | 1_3:+5780306 | None:intergenic |
| AGAGATCAACAAACCACGAG+AGG | 0.700583 | 1_3:-5781364 | Msa0099580:CDS |
| AAGCACAGAAAATCACGGCG+AGG | 0.718569 | 1_3:-5780868 | Msa0099580:CDS |
| CATCTTGGTCGTGATCACGT+AGG | 0.729154 | 1_3:+5781117 | None:intergenic |
| GAAGAAGCAGATGAACACAT+GGG | 0.731435 | 1_3:-5780679 | Msa0099580:CDS |
| AACACATGGGAGACTCACGA+GGG | 0.759784 | 1_3:-5780666 | Msa0099580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATGATTTAGTTTTATTAA+AGG | - | chr1_3:5781222-5781241 | Msa0099580:CDS | 15.0% |
| !!! | GAATGATTTAGTTTTATTAA+AGG | - | chr1_3:5781222-5781241 | Msa0099580:CDS | 15.0% |
| !!! | TTTTTGTTCTCTGTAAAATT+TGG | + | chr1_3:5780429-5780448 | None:intergenic | 20.0% |
| !! | TATTAATCAAAAAGAAGAAG+AGG | - | chr1_3:5781252-5781271 | Msa0099580:CDS | 20.0% |
| !!! | TTTTTGTTCTCTGTAAAATT+TGG | + | chr1_3:5780429-5780448 | None:intergenic | 20.0% |
| !! | TATTAATCAAAAAGAAGAAG+AGG | - | chr1_3:5781252-5781271 | Msa0099580:CDS | 20.0% |
| ! | TCTGTAAAATTTGGTTGTTT+CGG | + | chr1_3:5780420-5780439 | None:intergenic | 25.0% |
| !!! | GTTGATTTGTTTAAAATCGT+TGG | + | chr1_3:5780452-5780471 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGTTTTTGGTTTG+TGG | + | chr1_3:5780502-5780521 | None:intergenic | 25.0% |
| !!! | GAAACAGTTTTTTCTGTTTT+TGG | + | chr1_3:5780509-5780528 | None:intergenic | 25.0% |
| ! | AATAAAGAACAAATCAAGAG+CGG | - | chr1_3:5780844-5780863 | Msa0099580:CDS | 25.0% |
| ! | TGGTAGAAATGATTACAAAA+CGG | - | chr1_3:5781108-5781127 | Msa0099580:CDS | 25.0% |
| !! | TCTTCTTCTTGTTATAACAT+TGG | + | chr1_3:5781204-5781223 | None:intergenic | 25.0% |
| ! | TCTGTAAAATTTGGTTGTTT+CGG | + | chr1_3:5780420-5780439 | None:intergenic | 25.0% |
| !!! | GTTGATTTGTTTAAAATCGT+TGG | + | chr1_3:5780452-5780471 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGTTTTTGGTTTG+TGG | + | chr1_3:5780502-5780521 | None:intergenic | 25.0% |
| !!! | GAAACAGTTTTTTCTGTTTT+TGG | + | chr1_3:5780509-5780528 | None:intergenic | 25.0% |
| ! | AATAAAGAACAAATCAAGAG+CGG | - | chr1_3:5780844-5780863 | Msa0099580:CDS | 25.0% |
| ! | TGGTAGAAATGATTACAAAA+CGG | - | chr1_3:5781108-5781127 | Msa0099580:CDS | 25.0% |
| !! | TCTTCTTCTTGTTATAACAT+TGG | + | chr1_3:5781204-5781223 | None:intergenic | 25.0% |
| TCCGATACAGATTCATTATA+CGG | - | chr1_3:5780644-5780663 | Msa0099580:CDS | 30.0% | |
| TCCGTATAATGAATCTGTAT+CGG | + | chr1_3:5780648-5780667 | None:intergenic | 30.0% | |
| AAACAAAGCACAGAAAATCA+CGG | - | chr1_3:5780806-5780825 | Msa0099580:CDS | 30.0% | |
| ATCATTTCTACCACAAAATG+AGG | + | chr1_3:5781101-5781120 | None:intergenic | 30.0% | |
| !!! | AAGTTCTGATCTTTTTGAGT+TGG | - | chr1_3:5781306-5781325 | Msa0099580:CDS | 30.0% |
| TCCGATACAGATTCATTATA+CGG | - | chr1_3:5780644-5780663 | Msa0099580:CDS | 30.0% | |
| TCCGTATAATGAATCTGTAT+CGG | + | chr1_3:5780648-5780667 | None:intergenic | 30.0% | |
| AAACAAAGCACAGAAAATCA+CGG | - | chr1_3:5780806-5780825 | Msa0099580:CDS | 30.0% | |
| ATCATTTCTACCACAAAATG+AGG | + | chr1_3:5781101-5781120 | None:intergenic | 30.0% | |
| !!! | AAGTTCTGATCTTTTTGAGT+TGG | - | chr1_3:5781306-5781325 | Msa0099580:CDS | 30.0% |
| ACGGTAAATTTGGTCTAAGA+GGG | + | chr1_3:5780366-5780385 | None:intergenic | 35.0% | |
| AACGGTAAATTTGGTCTAAG+AGG | + | chr1_3:5780367-5780386 | None:intergenic | 35.0% | |
| ! | GTAAAATTTGGTTGTTTCGG+TGG | + | chr1_3:5780417-5780436 | None:intergenic | 35.0% |
| !!! | GTTGGTGTTATGTTTTGTGT+CGG | + | chr1_3:5780477-5780496 | None:intergenic | 35.0% |
| !!! | TGTTTTTGGTTTGTGGTTGT+TGG | + | chr1_3:5780495-5780514 | None:intergenic | 35.0% |
| CAGTTCTACCTCAATTTCTT+CGG | - | chr1_3:5780595-5780614 | Msa0099580:CDS | 35.0% | |
| GTATAATGAATCTGTATCGG+AGG | + | chr1_3:5780645-5780664 | None:intergenic | 35.0% | |
| ATTTCTACCACAAAATGAGG+CGG | + | chr1_3:5781098-5781117 | None:intergenic | 35.0% | |
| ! | TACAAAACGGTACGTTTTTG+TGG | - | chr1_3:5781121-5781140 | Msa0099580:CDS | 35.0% |
| TTGGATCATTTGAGTGTGTT+TGG | - | chr1_3:5781325-5781344 | Msa0099580:CDS | 35.0% | |
| ACGGTAAATTTGGTCTAAGA+GGG | + | chr1_3:5780366-5780385 | None:intergenic | 35.0% | |
| AACGGTAAATTTGGTCTAAG+AGG | + | chr1_3:5780367-5780386 | None:intergenic | 35.0% | |
| ! | GTAAAATTTGGTTGTTTCGG+TGG | + | chr1_3:5780417-5780436 | None:intergenic | 35.0% |
| !!! | GTTGGTGTTATGTTTTGTGT+CGG | + | chr1_3:5780477-5780496 | None:intergenic | 35.0% |
| !!! | TGTTTTTGGTTTGTGGTTGT+TGG | + | chr1_3:5780495-5780514 | None:intergenic | 35.0% |
| CAGTTCTACCTCAATTTCTT+CGG | - | chr1_3:5780595-5780614 | Msa0099580:CDS | 35.0% | |
| GTATAATGAATCTGTATCGG+AGG | + | chr1_3:5780645-5780664 | None:intergenic | 35.0% | |
| ATTTCTACCACAAAATGAGG+CGG | + | chr1_3:5781098-5781117 | None:intergenic | 35.0% | |
| ! | TACAAAACGGTACGTTTTTG+TGG | - | chr1_3:5781121-5781140 | Msa0099580:CDS | 35.0% |
| TTGGATCATTTGAGTGTGTT+TGG | - | chr1_3:5781325-5781344 | Msa0099580:CDS | 35.0% | |
| GTAAATTTGGTCTAAGAGGG+TGG | + | chr1_3:5780363-5780382 | None:intergenic | 40.0% | |
| !! | TTTTGTTTCTCCTACGTCGA+TGG | + | chr1_3:5780390-5780409 | None:intergenic | 40.0% |
| TAGGTGGAACTTTCTGTTGT+CGG | + | chr1_3:5780546-5780565 | None:intergenic | 40.0% | |
| ! | AACTGAAGAACAGAGCATCT+TGG | + | chr1_3:5780580-5780599 | None:intergenic | 40.0% |
| GCTAGAATCCGAAGAAATTG+AGG | + | chr1_3:5780606-5780625 | None:intergenic | 40.0% | |
| !! | ATTTCTTCGGATTCTAGCTC+CGG | - | chr1_3:5780608-5780627 | Msa0099580:CDS | 40.0% |
| TAATGAATCTGTATCGGAGG+AGG | + | chr1_3:5780642-5780661 | None:intergenic | 40.0% | |
| GGCATCATTTAGGCTTGAAA+AGG | - | chr1_3:5780733-5780752 | Msa0099580:CDS | 40.0% | |
| TAGGCTTGAAAAGGAGAAAC+AGG | - | chr1_3:5780742-5780761 | Msa0099580:CDS | 40.0% | |
| AGGCTTGAAAAGGAGAAACA+GGG | - | chr1_3:5780743-5780762 | Msa0099580:CDS | 40.0% | |
| ! | AAACTAGTGAGTTTTCCACC+TGG | + | chr1_3:5780914-5780933 | None:intergenic | 40.0% |
| ATCTGCTTCTTCGTCTTTGT+TGG | + | chr1_3:5780992-5781011 | None:intergenic | 40.0% | |
| GAAGAAGCAGATGAACACAT+GGG | - | chr1_3:5781000-5781019 | Msa0099580:CDS | 40.0% | |
| ! | GGATGAAGATGATGATGATG+TGG | - | chr1_3:5781273-5781292 | Msa0099580:CDS | 40.0% |
| GTAAATTTGGTCTAAGAGGG+TGG | + | chr1_3:5780363-5780382 | None:intergenic | 40.0% | |
| !! | TTTTGTTTCTCCTACGTCGA+TGG | + | chr1_3:5780390-5780409 | None:intergenic | 40.0% |
| TAGGTGGAACTTTCTGTTGT+CGG | + | chr1_3:5780546-5780565 | None:intergenic | 40.0% | |
| ! | AACTGAAGAACAGAGCATCT+TGG | + | chr1_3:5780580-5780599 | None:intergenic | 40.0% |
| GCTAGAATCCGAAGAAATTG+AGG | + | chr1_3:5780606-5780625 | None:intergenic | 40.0% | |
| !! | ATTTCTTCGGATTCTAGCTC+CGG | - | chr1_3:5780608-5780627 | Msa0099580:CDS | 40.0% |
| TAATGAATCTGTATCGGAGG+AGG | + | chr1_3:5780642-5780661 | None:intergenic | 40.0% | |
| GGCATCATTTAGGCTTGAAA+AGG | - | chr1_3:5780733-5780752 | Msa0099580:CDS | 40.0% | |
| TAGGCTTGAAAAGGAGAAAC+AGG | - | chr1_3:5780742-5780761 | Msa0099580:CDS | 40.0% | |
| AGGCTTGAAAAGGAGAAACA+GGG | - | chr1_3:5780743-5780762 | Msa0099580:CDS | 40.0% | |
| ! | AAACTAGTGAGTTTTCCACC+TGG | + | chr1_3:5780914-5780933 | None:intergenic | 40.0% |
| ATCTGCTTCTTCGTCTTTGT+TGG | + | chr1_3:5780992-5781011 | None:intergenic | 40.0% | |
| GAAGAAGCAGATGAACACAT+GGG | - | chr1_3:5781000-5781019 | Msa0099580:CDS | 40.0% | |
| ! | GGATGAAGATGATGATGATG+TGG | - | chr1_3:5781273-5781292 | Msa0099580:CDS | 40.0% |
| AGAGATCAACAAACCACGAG+AGG | - | chr1_3:5780315-5780334 | Msa0099580:CDS | 45.0% | |
| AAGGGTTTATGAACCTCTCG+TGG | + | chr1_3:5780331-5780350 | None:intergenic | 45.0% | |
| AGAGGGTGGAAGAGAATGAA+GGG | + | chr1_3:5780349-5780368 | None:intergenic | 45.0% | |
| AAGAGGGTGGAAGAGAATGA+AGG | + | chr1_3:5780350-5780369 | None:intergenic | 45.0% | |
| CGTCGATGGAACGGTAAATT+TGG | + | chr1_3:5780376-5780395 | None:intergenic | 45.0% | |
| ATTTACCGTTCCATCGACGT+AGG | - | chr1_3:5780377-5780396 | Msa0099580:CDS | 45.0% | |
| TTTCTCCTACGTCGATGGAA+CGG | + | chr1_3:5780385-5780404 | None:intergenic | 45.0% | |
| !! | ACGCTTGTTCTAACCGGTTT+TGG | + | chr1_3:5780710-5780729 | None:intergenic | 45.0% |
| GGCTTGAAAAGGAGAAACAG+GGG | - | chr1_3:5780744-5780763 | Msa0099580:CDS | 45.0% | |
| ! | AGTTTTCCACCTGGCGAAAT+CGG | + | chr1_3:5780905-5780924 | None:intergenic | 45.0% |
| CGAAGAAGCAGATGAACACA+TGG | - | chr1_3:5780999-5781018 | Msa0099580:CDS | 45.0% | |
| ! | CATCTGCTTCTTCGTTTTCG+CGG | - | chr1_3:5781056-5781075 | Msa0099580:CDS | 45.0% |
| ! | AGCAAAACCGCCTCATTTTG+TGG | - | chr1_3:5781088-5781107 | Msa0099580:CDS | 45.0% |
| ! | AACGGTACGTTTTTGTGGAG+TGG | - | chr1_3:5781126-5781145 | Msa0099580:CDS | 45.0% |
| ! | ACGTTTTTGTGGAGTGGAAG+AGG | - | chr1_3:5781132-5781151 | Msa0099580:CDS | 45.0% |
| ! | CGTTTTTGTGGAGTGGAAGA+GGG | - | chr1_3:5781133-5781152 | Msa0099580:CDS | 45.0% |
| TGAGTGTGTTTGGAGACAGT+AGG | - | chr1_3:5781335-5781354 | Msa0099580:CDS | 45.0% | |
| ! | TGGAGACAGTAGGTATTGTG+AGG | - | chr1_3:5781345-5781364 | Msa0099580:CDS | 45.0% |
| ACACGAGTAGTTCCATACAC+AGG | + | chr1_3:5781376-5781395 | None:intergenic | 45.0% | |
| AGAGATCAACAAACCACGAG+AGG | - | chr1_3:5780315-5780334 | Msa0099580:CDS | 45.0% | |
| AAGGGTTTATGAACCTCTCG+TGG | + | chr1_3:5780331-5780350 | None:intergenic | 45.0% | |
| AGAGGGTGGAAGAGAATGAA+GGG | + | chr1_3:5780349-5780368 | None:intergenic | 45.0% | |
| AAGAGGGTGGAAGAGAATGA+AGG | + | chr1_3:5780350-5780369 | None:intergenic | 45.0% | |
| CGTCGATGGAACGGTAAATT+TGG | + | chr1_3:5780376-5780395 | None:intergenic | 45.0% | |
| ATTTACCGTTCCATCGACGT+AGG | - | chr1_3:5780377-5780396 | Msa0099580:CDS | 45.0% | |
| TTTCTCCTACGTCGATGGAA+CGG | + | chr1_3:5780385-5780404 | None:intergenic | 45.0% | |
| !! | ACGCTTGTTCTAACCGGTTT+TGG | + | chr1_3:5780710-5780729 | None:intergenic | 45.0% |
| GGCTTGAAAAGGAGAAACAG+GGG | - | chr1_3:5780744-5780763 | Msa0099580:CDS | 45.0% | |
| ! | AGTTTTCCACCTGGCGAAAT+CGG | + | chr1_3:5780905-5780924 | None:intergenic | 45.0% |
| CGAAGAAGCAGATGAACACA+TGG | - | chr1_3:5780999-5781018 | Msa0099580:CDS | 45.0% | |
| ! | CATCTGCTTCTTCGTTTTCG+CGG | - | chr1_3:5781056-5781075 | Msa0099580:CDS | 45.0% |
| ! | AGCAAAACCGCCTCATTTTG+TGG | - | chr1_3:5781088-5781107 | Msa0099580:CDS | 45.0% |
| ! | AACGGTACGTTTTTGTGGAG+TGG | - | chr1_3:5781126-5781145 | Msa0099580:CDS | 45.0% |
| ! | ACGTTTTTGTGGAGTGGAAG+AGG | - | chr1_3:5781132-5781151 | Msa0099580:CDS | 45.0% |
| ! | CGTTTTTGTGGAGTGGAAGA+GGG | - | chr1_3:5781133-5781152 | Msa0099580:CDS | 45.0% |
| TGAGTGTGTTTGGAGACAGT+AGG | - | chr1_3:5781335-5781354 | Msa0099580:CDS | 45.0% | |
| ! | TGGAGACAGTAGGTATTGTG+AGG | - | chr1_3:5781345-5781364 | Msa0099580:CDS | 45.0% |
| ACACGAGTAGTTCCATACAC+AGG | + | chr1_3:5781376-5781395 | None:intergenic | 45.0% | |
| CATCTTGGTCGTGATCACGT+AGG | + | chr1_3:5780565-5780584 | None:intergenic | 50.0% | |
| !! | GTTCTAACCGGTTTTGGCCT+AGG | + | chr1_3:5780704-5780723 | None:intergenic | 50.0% |
| ACCGGTTAGAACAAGCGTGT+CGG | - | chr1_3:5780712-5780731 | Msa0099580:CDS | 50.0% | |
| ! | CAAGCGTGTCGGCATCATTT+AGG | - | chr1_3:5780723-5780742 | Msa0099580:CDS | 50.0% |
| AGGGGAATCACGATTTCGAC+AGG | - | chr1_3:5780762-5780781 | Msa0099580:CDS | 50.0% | |
| AAGCACAGAAAATCACGGCG+AGG | - | chr1_3:5780811-5780830 | Msa0099580:CDS | 50.0% | |
| AGAAAATCACGGCGAGGAAG+CGG | - | chr1_3:5780817-5780836 | Msa0099580:CDS | 50.0% | |
| AACACATGGGAGACTCACGA+GGG | - | chr1_3:5781013-5781032 | Msa0099580:CDS | 50.0% | |
| CGAAGAAGCAGATGAACACG+TGG | + | chr1_3:5781050-5781069 | None:intergenic | 50.0% | |
| TTTGTGGAGTGGAAGAGGGT+AGG | - | chr1_3:5781137-5781156 | Msa0099580:CDS | 50.0% | |
| TTGTGGAGTGGAAGAGGGTA+GGG | - | chr1_3:5781138-5781157 | Msa0099580:CDS | 50.0% | |
| TGTGAGGAGCTTCCTGTGTA+TGG | - | chr1_3:5781361-5781380 | Msa0099580:CDS | 50.0% | |
| CATCTTGGTCGTGATCACGT+AGG | + | chr1_3:5780565-5780584 | None:intergenic | 50.0% | |
| !! | GTTCTAACCGGTTTTGGCCT+AGG | + | chr1_3:5780704-5780723 | None:intergenic | 50.0% |
| ACCGGTTAGAACAAGCGTGT+CGG | - | chr1_3:5780712-5780731 | Msa0099580:CDS | 50.0% | |
| ! | CAAGCGTGTCGGCATCATTT+AGG | - | chr1_3:5780723-5780742 | Msa0099580:CDS | 50.0% |
| AGGGGAATCACGATTTCGAC+AGG | - | chr1_3:5780762-5780781 | Msa0099580:CDS | 50.0% | |
| AAGCACAGAAAATCACGGCG+AGG | - | chr1_3:5780811-5780830 | Msa0099580:CDS | 50.0% | |
| AGAAAATCACGGCGAGGAAG+CGG | - | chr1_3:5780817-5780836 | Msa0099580:CDS | 50.0% | |
| AACACATGGGAGACTCACGA+GGG | - | chr1_3:5781013-5781032 | Msa0099580:CDS | 50.0% | |
| CGAAGAAGCAGATGAACACG+TGG | + | chr1_3:5781050-5781069 | None:intergenic | 50.0% | |
| TTTGTGGAGTGGAAGAGGGT+AGG | - | chr1_3:5781137-5781156 | Msa0099580:CDS | 50.0% | |
| TTGTGGAGTGGAAGAGGGTA+GGG | - | chr1_3:5781138-5781157 | Msa0099580:CDS | 50.0% | |
| TGTGAGGAGCTTCCTGTGTA+TGG | - | chr1_3:5781361-5781380 | Msa0099580:CDS | 50.0% | |
| CTTGGTCGTGATCACGTAGG+TGG | + | chr1_3:5780562-5780581 | None:intergenic | 55.0% | |
| !! | TCTTCGGATTCTAGCTCCGG+TGG | - | chr1_3:5780611-5780630 | Msa0099580:CDS | 55.0% |
| ATCGGAGGAGGAGAATCCAC+CGG | + | chr1_3:5780630-5780649 | None:intergenic | 55.0% | |
| CGTTCCACCTAGGCCAAAAC+CGG | - | chr1_3:5780694-5780713 | Msa0099580:CDS | 55.0% | |
| !! | CTAACCGGTTTTGGCCTAGG+TGG | + | chr1_3:5780701-5780720 | None:intergenic | 55.0% |
| GCCGACACGCTTGTTCTAAC+CGG | + | chr1_3:5780716-5780735 | None:intergenic | 55.0% | |
| ! | GTGAAGCAACCGATTTCGCC+AGG | - | chr1_3:5780893-5780912 | Msa0099580:CDS | 55.0% |
| ! | AAGCAACCGATTTCGCCAGG+TGG | - | chr1_3:5780896-5780915 | Msa0099580:CDS | 55.0% |
| GAACACATGGGAGACTCACG+AGG | - | chr1_3:5781012-5781031 | Msa0099580:CDS | 55.0% | |
| AGTGGAAGAGGGTAGGGCTA+AGG | - | chr1_3:5781144-5781163 | Msa0099580:CDS | 55.0% | |
| CTTGGTCGTGATCACGTAGG+TGG | + | chr1_3:5780562-5780581 | None:intergenic | 55.0% | |
| !! | TCTTCGGATTCTAGCTCCGG+TGG | - | chr1_3:5780611-5780630 | Msa0099580:CDS | 55.0% |
| ATCGGAGGAGGAGAATCCAC+CGG | + | chr1_3:5780630-5780649 | None:intergenic | 55.0% | |
| CGTTCCACCTAGGCCAAAAC+CGG | - | chr1_3:5780694-5780713 | Msa0099580:CDS | 55.0% | |
| !! | CTAACCGGTTTTGGCCTAGG+TGG | + | chr1_3:5780701-5780720 | None:intergenic | 55.0% |
| GCCGACACGCTTGTTCTAAC+CGG | + | chr1_3:5780716-5780735 | None:intergenic | 55.0% | |
| ! | GTGAAGCAACCGATTTCGCC+AGG | - | chr1_3:5780893-5780912 | Msa0099580:CDS | 55.0% |
| ! | AAGCAACCGATTTCGCCAGG+TGG | - | chr1_3:5780896-5780915 | Msa0099580:CDS | 55.0% |
| GAACACATGGGAGACTCACG+AGG | - | chr1_3:5781012-5781031 | Msa0099580:CDS | 55.0% | |
| AGTGGAAGAGGGTAGGGCTA+AGG | - | chr1_3:5781144-5781163 | Msa0099580:CDS | 55.0% | |
| CGTCGTGCTTCGTTCCACCT+AGG | - | chr1_3:5780684-5780703 | Msa0099580:CDS | 60.0% | |
| GGAAGAGGGTAGGGCTAAGG+TGG | - | chr1_3:5781147-5781166 | Msa0099580:CDS | 60.0% | |
| AGAGGGTAGGGCTAAGGTGG+AGG | - | chr1_3:5781150-5781169 | Msa0099580:CDS | 60.0% | |
| CGTCGTGCTTCGTTCCACCT+AGG | - | chr1_3:5780684-5780703 | Msa0099580:CDS | 60.0% | |
| GGAAGAGGGTAGGGCTAAGG+TGG | - | chr1_3:5781147-5781166 | Msa0099580:CDS | 60.0% | |
| AGAGGGTAGGGCTAAGGTGG+AGG | - | chr1_3:5781150-5781169 | Msa0099580:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 5780299 | 5781402 | 5780299 | ID=Msa0099580;Name=Msa0099580 |
| chr1_3 | mRNA | 5780299 | 5781402 | 5780299 | ID=Msa0099580-mRNA-1;Parent=Msa0099580;Name=Msa0099580-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|367 |
| chr1_3 | exon | 5780299 | 5781402 | 5780299 | ID=Msa0099580-mRNA-1:exon:2204;Parent=Msa0099580-mRNA-1 |
| chr1_3 | CDS | 5780299 | 5781402 | 5780299 | ID=Msa0099580-mRNA-1:cds;Parent=Msa0099580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
