Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043540 | XP_013465878.1 | 86.179 | 369 | 46 | 3 | 1 | 366 | 1 | 367 | 1.20e-161 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043540 | sp|Q9LVK2|BIG1A_ARATH | 41.445 | 263 | 82 | 8 | 136 | 367 | 124 | 345 | 1.10e-32 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043540 | A0A072VD40 | 86.179 | 369 | 46 | 3 | 1 | 366 | 1 | 367 | 5.73e-162 | 467 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006470 | Msa1043540 | 0.802884 | 4.539468e-49 | -8.615850e-47 |
| Msa0099580 | Msa1043540 | 0.985725 | 1.808108e-164 | -8.615850e-47 |
| Msa0610850 | Msa1043540 | 0.821724 | 3.467169e-53 | -8.615850e-47 |
| Msa0651340 | Msa1043540 | 0.801847 | 7.423421e-49 | -8.615850e-47 |
| Msa0148190 | Msa1043540 | 0.819238 | 1.290034e-52 | -8.615850e-47 |
| Msa0218480 | Msa1043540 | 0.815904 | 7.277309e-52 | -8.615850e-47 |
| Msa0218590 | Msa1043540 | 0.815903 | 7.284387e-52 | -8.615850e-47 |
| Msa0451760 | Msa1043540 | 0.804722 | 1.884755e-49 | -8.615850e-47 |
| Msa1043540 | Msa1055710 | 0.816009 | 6.897694e-52 | -8.615850e-47 |
| Msa1043540 | Msa1190460 | 0.802262 | 6.097990e-49 | -8.615850e-47 |
| Msa1043540 | Msa1327400 | 0.800912 | 1.153373e-48 | -8.615850e-47 |
| Msa1043540 | Msa1457070 | 0.803178 | 3.945779e-49 | -8.615850e-47 |
| Msa0544930 | Msa1043540 | 0.803647 | 3.154502e-49 | -8.615850e-47 |
| Msa0575540 | Msa1043540 | 0.800623 | 1.321240e-48 | -8.615850e-47 |
| Msa0578890 | Msa1043540 | 0.811161 | 8.041615e-51 | -8.615850e-47 |
| Msa0930090 | Msa1043540 | 0.800636 | 1.313347e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043540 | MtrunA17_Chr1g0150831 | 86.179 | 369 | 46 | 3 | 1 | 366 | 1 | 367 | 1.10e-165 | 467 |
| Msa1043540 | MtrunA17_Chr3g0136111 | 44.444 | 414 | 133 | 16 | 1 | 366 | 1 | 365 | 1.13e-54 | 184 |
| Msa1043540 | MtrunA17_Chr8g0343541 | 40.095 | 419 | 174 | 13 | 1 | 367 | 1 | 394 | 1.57e-33 | 128 |
| Msa1043540 | MtrunA17_Chr4g0070711 | 33.425 | 365 | 181 | 15 | 17 | 366 | 15 | 332 | 5.30e-21 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043540 | AT3G13980.1 | 41.445 | 263 | 82 | 8 | 136 | 367 | 124 | 345 | 1.12e-33 | 128 |
| Msa1043540 | AT1G54200.1 | 37.376 | 404 | 156 | 14 | 4 | 367 | 13 | 359 | 2.11e-33 | 127 |
| Msa1043540 | AT5G12050.1 | 32.746 | 397 | 172 | 13 | 16 | 364 | 7 | 356 | 1.87e-18 | 86.3 |
| Msa1043540 | AT3G42800.1 | 32.308 | 195 | 109 | 5 | 186 | 364 | 140 | 327 | 2.27e-13 | 70.9 |
Find 64 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCTTGTTCTAACCGGTTT+TGG | 0.272024 | 7_2:+1736569 | None:intergenic |
| ATCTGCTTCTTCGTCTTTGT+TGG | 0.273644 | 7_2:+1736287 | None:intergenic |
| CGTCGATGGAACGGTAAATT+TGG | 0.324003 | 7_2:+1736903 | None:intergenic |
| TCCGATACAGATTCATTATA+CGG | 0.335788 | 7_2:-1736632 | Msa1043540:CDS |
| CAAGCGTGTCGGCATCATTT+AGG | 0.345034 | 7_2:-1736553 | Msa1043540:CDS |
| TAGGCTTGAAAAGGAGAAAC+AGG | 0.345846 | 7_2:-1736534 | Msa1043540:CDS |
| CAGTTCTACCTCAATTTCTT+CGG | 0.371586 | 7_2:-1736681 | Msa1043540:CDS |
| TTGGATCATTTGAGTGTGTT+TGG | 0.380923 | 7_2:-1735951 | Msa1043540:CDS |
| TCTGTAAAATTTGGTTGTTT+CGG | 0.390011 | 7_2:+1736859 | None:intergenic |
| GGAAGAGGGTAGGGCTAAGG+TGG | 0.392720 | 7_2:-1736129 | Msa1043540:CDS |
| GCCGACACGCTTGTTCTAAC+CGG | 0.412919 | 7_2:+1736563 | None:intergenic |
| AGAGGGTAGGGCTAAGGTGG+AGG | 0.421619 | 7_2:-1736126 | Msa1043540:CDS |
| TTGTGGAGTGGAAGAGGGTA+GGG | 0.431294 | 7_2:-1736138 | Msa1043540:CDS |
| TAGGTGGAACTTTCTGTTGT+CGG | 0.435349 | 7_2:+1736733 | None:intergenic |
| GTTGATTTGTTTAAAATCGT+TGG | 0.437197 | 7_2:+1736827 | None:intergenic |
| AGTGGAAGAGGGTAGGGCTA+AGG | 0.442934 | 7_2:-1736132 | Msa1043540:CDS |
| CGTTCCACCTAGGCCAAAAC+CGG | 0.444322 | 7_2:-1736582 | Msa1043540:CDS |
| TGTGAGGAGCTTCCTGTGTA+TGG | 0.451538 | 7_2:-1735915 | Msa1043540:CDS |
| GTAAAATTTGGTTGTTTCGG+TGG | 0.460218 | 7_2:+1736862 | None:intergenic |
| ATTTCTTCGGATTCTAGCTC+CGG | 0.469115 | 7_2:-1736668 | Msa1043540:CDS |
| AACGGTAAATTTGGTCTAAG+AGG | 0.473989 | 7_2:+1736912 | None:intergenic |
| GGCATCATTTAGGCTTGAAA+AGG | 0.486316 | 7_2:-1736543 | Msa1043540:CDS |
| AAGAGGGTGGAAGAGAATGA+AGG | 0.489820 | 7_2:+1736929 | None:intergenic |
| TTTGTGGAGTGGAAGAGGGT+AGG | 0.496413 | 7_2:-1736139 | Msa1043540:CDS |
| TCTTCTTCTTGTTATAACAT+TGG | 0.508602 | 7_2:+1736075 | None:intergenic |
| ATCATTTCTACCACAAAATG+AGG | 0.508732 | 7_2:+1736178 | None:intergenic |
| AGGGGAATCACGATTTCGAC+AGG | 0.517336 | 7_2:-1736514 | Msa1043540:CDS |
| AGAAAATCACGGCGAGGAAG+CGG | 0.522094 | 7_2:-1736459 | Msa1043540:CDS |
| GTGAAGCAACCGATTTCGCC+AGG | 0.534045 | 7_2:-1736383 | Msa1043540:CDS |
| TGGTAGAAATGATTACAAAA+CGG | 0.535489 | 7_2:-1736168 | Msa1043540:CDS |
| AACTGAAGAACAGAGCATCT+TGG | 0.537118 | 7_2:+1736699 | None:intergenic |
| CGTCGTGCTTCGTTCCACCT+AGG | 0.539775 | 7_2:-1736592 | Msa1043540:CDS |
| CGAAGAAGCAGATGAACACA+TGG | 0.541264 | 7_2:-1736277 | Msa1043540:CDS |
| GCTAGAATCCGAAGAAATTG+AGG | 0.552801 | 7_2:+1736673 | None:intergenic |
| AGAGGGTGGAAGAGAATGAA+GGG | 0.557335 | 7_2:+1736930 | None:intergenic |
| TTTCTCCTACGTCGATGGAA+CGG | 0.562365 | 7_2:+1736894 | None:intergenic |
| TAATGAATCTGTATCGGAGG+AGG | 0.579684 | 7_2:+1736637 | None:intergenic |
| TCCGTATAATGAATCTGTAT+CGG | 0.585229 | 7_2:+1736631 | None:intergenic |
| AAGGGTTTATGAACCTCTCG+TGG | 0.590814 | 7_2:+1736948 | None:intergenic |
| TCTTCGGATTCTAGCTCCGG+TGG | 0.592579 | 7_2:-1736665 | Msa1043540:CDS |
| ACGGTAAATTTGGTCTAAGA+GGG | 0.594369 | 7_2:+1736913 | None:intergenic |
| ATCGGAGGAGGAGAATCCAC+CGG | 0.611196 | 7_2:+1736649 | None:intergenic |
| AATAAAGAACAAATCAAGAG+CGG | 0.611789 | 7_2:-1736432 | Msa1043540:CDS |
| AAACAAAGCACAGAAAATCA+CGG | 0.616367 | 7_2:-1736470 | Msa1043540:CDS |
| GTAAATTTGGTCTAAGAGGG+TGG | 0.617354 | 7_2:+1736916 | None:intergenic |
| TGAGTGTGTTTGGAGACAGT+AGG | 0.624040 | 7_2:-1735941 | Msa1043540:CDS |
| CTTGGTCGTGATCACGTAGG+TGG | 0.626477 | 7_2:+1736717 | None:intergenic |
| GAACACATGGGAGACTCACG+AGG | 0.626492 | 7_2:-1736264 | Msa1043540:CDS |
| AGGCTTGAAAAGGAGAAACA+GGG | 0.627580 | 7_2:-1736533 | Msa1043540:CDS |
| GGATGAAGATGATGATGATG+TGG | 0.631674 | 7_2:-1736003 | Msa1043540:CDS |
| TGGAGACAGTAGGTATTGTG+AGG | 0.635390 | 7_2:-1735931 | Msa1043540:CDS |
| CGAAGAAGCAGATGAACACG+TGG | 0.648153 | 7_2:+1736229 | None:intergenic |
| ACCGGTTAGAACAAGCGTGT+CGG | 0.655186 | 7_2:-1736564 | Msa1043540:CDS |
| GGCTTGAAAAGGAGAAACAG+GGG | 0.655509 | 7_2:-1736532 | Msa1043540:CDS |
| ATTTCTACCACAAAATGAGG+CGG | 0.655870 | 7_2:+1736181 | None:intergenic |
| AAGCAACCGATTTCGCCAGG+TGG | 0.662604 | 7_2:-1736380 | Msa1043540:CDS |
| ATTTACCGTTCCATCGACGT+AGG | 0.667081 | 7_2:-1736899 | Msa1043540:CDS |
| GTATAATGAATCTGTATCGG+AGG | 0.669558 | 7_2:+1736634 | None:intergenic |
| ACACGAGTAGTTCCATACAC+AGG | 0.691654 | 7_2:+1735903 | None:intergenic |
| AGAGATCAACAAACCACGAG+AGG | 0.700583 | 7_2:-1736961 | Msa1043540:CDS |
| AAGCACAGAAAATCACGGCG+AGG | 0.718569 | 7_2:-1736465 | Msa1043540:CDS |
| CATCTTGGTCGTGATCACGT+AGG | 0.729154 | 7_2:+1736714 | None:intergenic |
| GAAGAAGCAGATGAACACAT+GGG | 0.731435 | 7_2:-1736276 | Msa1043540:CDS |
| AACACATGGGAGACTCACGA+GGG | 0.759784 | 7_2:-1736263 | Msa1043540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATGATTTAGTTTTATTAA+AGG | - | chr7_2:1736819-1736838 | Msa1043540:CDS | 15.0% |
| !!! | GAATGATTTAGTTTTATTAA+AGG | - | chr7_2:1736819-1736838 | Msa1043540:CDS | 15.0% |
| !!! | TTTTTGTTCTCTGTAAAATT+TGG | + | chr7_2:1736026-1736045 | None:intergenic | 20.0% |
| !! | TATTAATCAAAAAGAAGAAG+AGG | - | chr7_2:1736849-1736868 | Msa1043540:CDS | 20.0% |
| !!! | TTTTTGTTCTCTGTAAAATT+TGG | + | chr7_2:1736026-1736045 | None:intergenic | 20.0% |
| !! | TATTAATCAAAAAGAAGAAG+AGG | - | chr7_2:1736849-1736868 | Msa1043540:CDS | 20.0% |
| ! | TCTGTAAAATTTGGTTGTTT+CGG | + | chr7_2:1736017-1736036 | None:intergenic | 25.0% |
| !!! | GTTGATTTGTTTAAAATCGT+TGG | + | chr7_2:1736049-1736068 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGTTTTTGGTTTG+TGG | + | chr7_2:1736099-1736118 | None:intergenic | 25.0% |
| !!! | GAAACAGTTTTTTCTGTTTT+TGG | + | chr7_2:1736106-1736125 | None:intergenic | 25.0% |
| ! | AATAAAGAACAAATCAAGAG+CGG | - | chr7_2:1736441-1736460 | Msa1043540:CDS | 25.0% |
| ! | TGGTAGAAATGATTACAAAA+CGG | - | chr7_2:1736705-1736724 | Msa1043540:CDS | 25.0% |
| !! | TCTTCTTCTTGTTATAACAT+TGG | + | chr7_2:1736801-1736820 | None:intergenic | 25.0% |
| ! | TCTGTAAAATTTGGTTGTTT+CGG | + | chr7_2:1736017-1736036 | None:intergenic | 25.0% |
| !!! | GTTGATTTGTTTAAAATCGT+TGG | + | chr7_2:1736049-1736068 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGTTTTTGGTTTG+TGG | + | chr7_2:1736099-1736118 | None:intergenic | 25.0% |
| !!! | GAAACAGTTTTTTCTGTTTT+TGG | + | chr7_2:1736106-1736125 | None:intergenic | 25.0% |
| ! | AATAAAGAACAAATCAAGAG+CGG | - | chr7_2:1736441-1736460 | Msa1043540:CDS | 25.0% |
| ! | TGGTAGAAATGATTACAAAA+CGG | - | chr7_2:1736705-1736724 | Msa1043540:CDS | 25.0% |
| !! | TCTTCTTCTTGTTATAACAT+TGG | + | chr7_2:1736801-1736820 | None:intergenic | 25.0% |
| TCCGATACAGATTCATTATA+CGG | - | chr7_2:1736241-1736260 | Msa1043540:CDS | 30.0% | |
| TCCGTATAATGAATCTGTAT+CGG | + | chr7_2:1736245-1736264 | None:intergenic | 30.0% | |
| AAACAAAGCACAGAAAATCA+CGG | - | chr7_2:1736403-1736422 | Msa1043540:CDS | 30.0% | |
| ATCATTTCTACCACAAAATG+AGG | + | chr7_2:1736698-1736717 | None:intergenic | 30.0% | |
| !!! | AAGTTCTGATCTTTTTGAGT+TGG | - | chr7_2:1736903-1736922 | Msa1043540:CDS | 30.0% |
| TCCGATACAGATTCATTATA+CGG | - | chr7_2:1736241-1736260 | Msa1043540:CDS | 30.0% | |
| TCCGTATAATGAATCTGTAT+CGG | + | chr7_2:1736245-1736264 | None:intergenic | 30.0% | |
| AAACAAAGCACAGAAAATCA+CGG | - | chr7_2:1736403-1736422 | Msa1043540:CDS | 30.0% | |
| ATCATTTCTACCACAAAATG+AGG | + | chr7_2:1736698-1736717 | None:intergenic | 30.0% | |
| !!! | AAGTTCTGATCTTTTTGAGT+TGG | - | chr7_2:1736903-1736922 | Msa1043540:CDS | 30.0% |
| ACGGTAAATTTGGTCTAAGA+GGG | + | chr7_2:1735963-1735982 | None:intergenic | 35.0% | |
| AACGGTAAATTTGGTCTAAG+AGG | + | chr7_2:1735964-1735983 | None:intergenic | 35.0% | |
| ! | GTAAAATTTGGTTGTTTCGG+TGG | + | chr7_2:1736014-1736033 | None:intergenic | 35.0% |
| !!! | GTTGGTGTTATGTTTTGTGT+CGG | + | chr7_2:1736074-1736093 | None:intergenic | 35.0% |
| !!! | TGTTTTTGGTTTGTGGTTGT+TGG | + | chr7_2:1736092-1736111 | None:intergenic | 35.0% |
| CAGTTCTACCTCAATTTCTT+CGG | - | chr7_2:1736192-1736211 | Msa1043540:CDS | 35.0% | |
| GTATAATGAATCTGTATCGG+AGG | + | chr7_2:1736242-1736261 | None:intergenic | 35.0% | |
| ATTTCTACCACAAAATGAGG+CGG | + | chr7_2:1736695-1736714 | None:intergenic | 35.0% | |
| ! | TACAAAACGGTACGTTTTTG+TGG | - | chr7_2:1736718-1736737 | Msa1043540:CDS | 35.0% |
| TTGGATCATTTGAGTGTGTT+TGG | - | chr7_2:1736922-1736941 | Msa1043540:CDS | 35.0% | |
| ACGGTAAATTTGGTCTAAGA+GGG | + | chr7_2:1735963-1735982 | None:intergenic | 35.0% | |
| AACGGTAAATTTGGTCTAAG+AGG | + | chr7_2:1735964-1735983 | None:intergenic | 35.0% | |
| ! | GTAAAATTTGGTTGTTTCGG+TGG | + | chr7_2:1736014-1736033 | None:intergenic | 35.0% |
| !!! | GTTGGTGTTATGTTTTGTGT+CGG | + | chr7_2:1736074-1736093 | None:intergenic | 35.0% |
| !!! | TGTTTTTGGTTTGTGGTTGT+TGG | + | chr7_2:1736092-1736111 | None:intergenic | 35.0% |
| CAGTTCTACCTCAATTTCTT+CGG | - | chr7_2:1736192-1736211 | Msa1043540:CDS | 35.0% | |
| GTATAATGAATCTGTATCGG+AGG | + | chr7_2:1736242-1736261 | None:intergenic | 35.0% | |
| ATTTCTACCACAAAATGAGG+CGG | + | chr7_2:1736695-1736714 | None:intergenic | 35.0% | |
| ! | TACAAAACGGTACGTTTTTG+TGG | - | chr7_2:1736718-1736737 | Msa1043540:CDS | 35.0% |
| TTGGATCATTTGAGTGTGTT+TGG | - | chr7_2:1736922-1736941 | Msa1043540:CDS | 35.0% | |
| GTAAATTTGGTCTAAGAGGG+TGG | + | chr7_2:1735960-1735979 | None:intergenic | 40.0% | |
| !! | TTTTGTTTCTCCTACGTCGA+TGG | + | chr7_2:1735987-1736006 | None:intergenic | 40.0% |
| TAGGTGGAACTTTCTGTTGT+CGG | + | chr7_2:1736143-1736162 | None:intergenic | 40.0% | |
| ! | AACTGAAGAACAGAGCATCT+TGG | + | chr7_2:1736177-1736196 | None:intergenic | 40.0% |
| GCTAGAATCCGAAGAAATTG+AGG | + | chr7_2:1736203-1736222 | None:intergenic | 40.0% | |
| !! | ATTTCTTCGGATTCTAGCTC+CGG | - | chr7_2:1736205-1736224 | Msa1043540:CDS | 40.0% |
| TAATGAATCTGTATCGGAGG+AGG | + | chr7_2:1736239-1736258 | None:intergenic | 40.0% | |
| GGCATCATTTAGGCTTGAAA+AGG | - | chr7_2:1736330-1736349 | Msa1043540:CDS | 40.0% | |
| TAGGCTTGAAAAGGAGAAAC+AGG | - | chr7_2:1736339-1736358 | Msa1043540:CDS | 40.0% | |
| AGGCTTGAAAAGGAGAAACA+GGG | - | chr7_2:1736340-1736359 | Msa1043540:CDS | 40.0% | |
| ! | AAACTAGTGAGTTTTCCACC+TGG | + | chr7_2:1736511-1736530 | None:intergenic | 40.0% |
| ATCTGCTTCTTCGTCTTTGT+TGG | + | chr7_2:1736589-1736608 | None:intergenic | 40.0% | |
| GAAGAAGCAGATGAACACAT+GGG | - | chr7_2:1736597-1736616 | Msa1043540:CDS | 40.0% | |
| ! | GGATGAAGATGATGATGATG+TGG | - | chr7_2:1736870-1736889 | Msa1043540:CDS | 40.0% |
| GTAAATTTGGTCTAAGAGGG+TGG | + | chr7_2:1735960-1735979 | None:intergenic | 40.0% | |
| !! | TTTTGTTTCTCCTACGTCGA+TGG | + | chr7_2:1735987-1736006 | None:intergenic | 40.0% |
| TAGGTGGAACTTTCTGTTGT+CGG | + | chr7_2:1736143-1736162 | None:intergenic | 40.0% | |
| ! | AACTGAAGAACAGAGCATCT+TGG | + | chr7_2:1736177-1736196 | None:intergenic | 40.0% |
| GCTAGAATCCGAAGAAATTG+AGG | + | chr7_2:1736203-1736222 | None:intergenic | 40.0% | |
| !! | ATTTCTTCGGATTCTAGCTC+CGG | - | chr7_2:1736205-1736224 | Msa1043540:CDS | 40.0% |
| TAATGAATCTGTATCGGAGG+AGG | + | chr7_2:1736239-1736258 | None:intergenic | 40.0% | |
| GGCATCATTTAGGCTTGAAA+AGG | - | chr7_2:1736330-1736349 | Msa1043540:CDS | 40.0% | |
| TAGGCTTGAAAAGGAGAAAC+AGG | - | chr7_2:1736339-1736358 | Msa1043540:CDS | 40.0% | |
| AGGCTTGAAAAGGAGAAACA+GGG | - | chr7_2:1736340-1736359 | Msa1043540:CDS | 40.0% | |
| ! | AAACTAGTGAGTTTTCCACC+TGG | + | chr7_2:1736511-1736530 | None:intergenic | 40.0% |
| ATCTGCTTCTTCGTCTTTGT+TGG | + | chr7_2:1736589-1736608 | None:intergenic | 40.0% | |
| GAAGAAGCAGATGAACACAT+GGG | - | chr7_2:1736597-1736616 | Msa1043540:CDS | 40.0% | |
| ! | GGATGAAGATGATGATGATG+TGG | - | chr7_2:1736870-1736889 | Msa1043540:CDS | 40.0% |
| AGAGATCAACAAACCACGAG+AGG | - | chr7_2:1735912-1735931 | Msa1043540:CDS | 45.0% | |
| AAGGGTTTATGAACCTCTCG+TGG | + | chr7_2:1735928-1735947 | None:intergenic | 45.0% | |
| AGAGGGTGGAAGAGAATGAA+GGG | + | chr7_2:1735946-1735965 | None:intergenic | 45.0% | |
| AAGAGGGTGGAAGAGAATGA+AGG | + | chr7_2:1735947-1735966 | None:intergenic | 45.0% | |
| CGTCGATGGAACGGTAAATT+TGG | + | chr7_2:1735973-1735992 | None:intergenic | 45.0% | |
| ATTTACCGTTCCATCGACGT+AGG | - | chr7_2:1735974-1735993 | Msa1043540:CDS | 45.0% | |
| TTTCTCCTACGTCGATGGAA+CGG | + | chr7_2:1735982-1736001 | None:intergenic | 45.0% | |
| !! | ACGCTTGTTCTAACCGGTTT+TGG | + | chr7_2:1736307-1736326 | None:intergenic | 45.0% |
| GGCTTGAAAAGGAGAAACAG+GGG | - | chr7_2:1736341-1736360 | Msa1043540:CDS | 45.0% | |
| ! | AGTTTTCCACCTGGCGAAAT+CGG | + | chr7_2:1736502-1736521 | None:intergenic | 45.0% |
| CGAAGAAGCAGATGAACACA+TGG | - | chr7_2:1736596-1736615 | Msa1043540:CDS | 45.0% | |
| ! | CATCTGCTTCTTCGTTTTCG+CGG | - | chr7_2:1736653-1736672 | Msa1043540:CDS | 45.0% |
| ! | AGCAAAACCGCCTCATTTTG+TGG | - | chr7_2:1736685-1736704 | Msa1043540:CDS | 45.0% |
| ! | AACGGTACGTTTTTGTGGAG+TGG | - | chr7_2:1736723-1736742 | Msa1043540:CDS | 45.0% |
| ! | ACGTTTTTGTGGAGTGGAAG+AGG | - | chr7_2:1736729-1736748 | Msa1043540:CDS | 45.0% |
| ! | CGTTTTTGTGGAGTGGAAGA+GGG | - | chr7_2:1736730-1736749 | Msa1043540:CDS | 45.0% |
| TGAGTGTGTTTGGAGACAGT+AGG | - | chr7_2:1736932-1736951 | Msa1043540:CDS | 45.0% | |
| ! | TGGAGACAGTAGGTATTGTG+AGG | - | chr7_2:1736942-1736961 | Msa1043540:CDS | 45.0% |
| ACACGAGTAGTTCCATACAC+AGG | + | chr7_2:1736973-1736992 | None:intergenic | 45.0% | |
| AGAGATCAACAAACCACGAG+AGG | - | chr7_2:1735912-1735931 | Msa1043540:CDS | 45.0% | |
| AAGGGTTTATGAACCTCTCG+TGG | + | chr7_2:1735928-1735947 | None:intergenic | 45.0% | |
| AGAGGGTGGAAGAGAATGAA+GGG | + | chr7_2:1735946-1735965 | None:intergenic | 45.0% | |
| AAGAGGGTGGAAGAGAATGA+AGG | + | chr7_2:1735947-1735966 | None:intergenic | 45.0% | |
| CGTCGATGGAACGGTAAATT+TGG | + | chr7_2:1735973-1735992 | None:intergenic | 45.0% | |
| ATTTACCGTTCCATCGACGT+AGG | - | chr7_2:1735974-1735993 | Msa1043540:CDS | 45.0% | |
| TTTCTCCTACGTCGATGGAA+CGG | + | chr7_2:1735982-1736001 | None:intergenic | 45.0% | |
| !! | ACGCTTGTTCTAACCGGTTT+TGG | + | chr7_2:1736307-1736326 | None:intergenic | 45.0% |
| GGCTTGAAAAGGAGAAACAG+GGG | - | chr7_2:1736341-1736360 | Msa1043540:CDS | 45.0% | |
| ! | AGTTTTCCACCTGGCGAAAT+CGG | + | chr7_2:1736502-1736521 | None:intergenic | 45.0% |
| CGAAGAAGCAGATGAACACA+TGG | - | chr7_2:1736596-1736615 | Msa1043540:CDS | 45.0% | |
| ! | CATCTGCTTCTTCGTTTTCG+CGG | - | chr7_2:1736653-1736672 | Msa1043540:CDS | 45.0% |
| ! | AGCAAAACCGCCTCATTTTG+TGG | - | chr7_2:1736685-1736704 | Msa1043540:CDS | 45.0% |
| ! | AACGGTACGTTTTTGTGGAG+TGG | - | chr7_2:1736723-1736742 | Msa1043540:CDS | 45.0% |
| ! | ACGTTTTTGTGGAGTGGAAG+AGG | - | chr7_2:1736729-1736748 | Msa1043540:CDS | 45.0% |
| ! | CGTTTTTGTGGAGTGGAAGA+GGG | - | chr7_2:1736730-1736749 | Msa1043540:CDS | 45.0% |
| TGAGTGTGTTTGGAGACAGT+AGG | - | chr7_2:1736932-1736951 | Msa1043540:CDS | 45.0% | |
| ! | TGGAGACAGTAGGTATTGTG+AGG | - | chr7_2:1736942-1736961 | Msa1043540:CDS | 45.0% |
| ACACGAGTAGTTCCATACAC+AGG | + | chr7_2:1736973-1736992 | None:intergenic | 45.0% | |
| CATCTTGGTCGTGATCACGT+AGG | + | chr7_2:1736162-1736181 | None:intergenic | 50.0% | |
| !! | GTTCTAACCGGTTTTGGCCT+AGG | + | chr7_2:1736301-1736320 | None:intergenic | 50.0% |
| ACCGGTTAGAACAAGCGTGT+CGG | - | chr7_2:1736309-1736328 | Msa1043540:CDS | 50.0% | |
| ! | CAAGCGTGTCGGCATCATTT+AGG | - | chr7_2:1736320-1736339 | Msa1043540:CDS | 50.0% |
| AGGGGAATCACGATTTCGAC+AGG | - | chr7_2:1736359-1736378 | Msa1043540:CDS | 50.0% | |
| AAGCACAGAAAATCACGGCG+AGG | - | chr7_2:1736408-1736427 | Msa1043540:CDS | 50.0% | |
| AGAAAATCACGGCGAGGAAG+CGG | - | chr7_2:1736414-1736433 | Msa1043540:CDS | 50.0% | |
| AACACATGGGAGACTCACGA+GGG | - | chr7_2:1736610-1736629 | Msa1043540:CDS | 50.0% | |
| CGAAGAAGCAGATGAACACG+TGG | + | chr7_2:1736647-1736666 | None:intergenic | 50.0% | |
| TTTGTGGAGTGGAAGAGGGT+AGG | - | chr7_2:1736734-1736753 | Msa1043540:CDS | 50.0% | |
| TTGTGGAGTGGAAGAGGGTA+GGG | - | chr7_2:1736735-1736754 | Msa1043540:CDS | 50.0% | |
| TGTGAGGAGCTTCCTGTGTA+TGG | - | chr7_2:1736958-1736977 | Msa1043540:CDS | 50.0% | |
| CATCTTGGTCGTGATCACGT+AGG | + | chr7_2:1736162-1736181 | None:intergenic | 50.0% | |
| !! | GTTCTAACCGGTTTTGGCCT+AGG | + | chr7_2:1736301-1736320 | None:intergenic | 50.0% |
| ACCGGTTAGAACAAGCGTGT+CGG | - | chr7_2:1736309-1736328 | Msa1043540:CDS | 50.0% | |
| ! | CAAGCGTGTCGGCATCATTT+AGG | - | chr7_2:1736320-1736339 | Msa1043540:CDS | 50.0% |
| AGGGGAATCACGATTTCGAC+AGG | - | chr7_2:1736359-1736378 | Msa1043540:CDS | 50.0% | |
| AAGCACAGAAAATCACGGCG+AGG | - | chr7_2:1736408-1736427 | Msa1043540:CDS | 50.0% | |
| AGAAAATCACGGCGAGGAAG+CGG | - | chr7_2:1736414-1736433 | Msa1043540:CDS | 50.0% | |
| AACACATGGGAGACTCACGA+GGG | - | chr7_2:1736610-1736629 | Msa1043540:CDS | 50.0% | |
| CGAAGAAGCAGATGAACACG+TGG | + | chr7_2:1736647-1736666 | None:intergenic | 50.0% | |
| TTTGTGGAGTGGAAGAGGGT+AGG | - | chr7_2:1736734-1736753 | Msa1043540:CDS | 50.0% | |
| TTGTGGAGTGGAAGAGGGTA+GGG | - | chr7_2:1736735-1736754 | Msa1043540:CDS | 50.0% | |
| TGTGAGGAGCTTCCTGTGTA+TGG | - | chr7_2:1736958-1736977 | Msa1043540:CDS | 50.0% | |
| CTTGGTCGTGATCACGTAGG+TGG | + | chr7_2:1736159-1736178 | None:intergenic | 55.0% | |
| !! | TCTTCGGATTCTAGCTCCGG+TGG | - | chr7_2:1736208-1736227 | Msa1043540:CDS | 55.0% |
| ATCGGAGGAGGAGAATCCAC+CGG | + | chr7_2:1736227-1736246 | None:intergenic | 55.0% | |
| CGTTCCACCTAGGCCAAAAC+CGG | - | chr7_2:1736291-1736310 | Msa1043540:CDS | 55.0% | |
| !! | CTAACCGGTTTTGGCCTAGG+TGG | + | chr7_2:1736298-1736317 | None:intergenic | 55.0% |
| GCCGACACGCTTGTTCTAAC+CGG | + | chr7_2:1736313-1736332 | None:intergenic | 55.0% | |
| ! | GTGAAGCAACCGATTTCGCC+AGG | - | chr7_2:1736490-1736509 | Msa1043540:CDS | 55.0% |
| ! | AAGCAACCGATTTCGCCAGG+TGG | - | chr7_2:1736493-1736512 | Msa1043540:CDS | 55.0% |
| GAACACATGGGAGACTCACG+AGG | - | chr7_2:1736609-1736628 | Msa1043540:CDS | 55.0% | |
| AGTGGAAGAGGGTAGGGCTA+AGG | - | chr7_2:1736741-1736760 | Msa1043540:CDS | 55.0% | |
| CTTGGTCGTGATCACGTAGG+TGG | + | chr7_2:1736159-1736178 | None:intergenic | 55.0% | |
| !! | TCTTCGGATTCTAGCTCCGG+TGG | - | chr7_2:1736208-1736227 | Msa1043540:CDS | 55.0% |
| ATCGGAGGAGGAGAATCCAC+CGG | + | chr7_2:1736227-1736246 | None:intergenic | 55.0% | |
| CGTTCCACCTAGGCCAAAAC+CGG | - | chr7_2:1736291-1736310 | Msa1043540:CDS | 55.0% | |
| !! | CTAACCGGTTTTGGCCTAGG+TGG | + | chr7_2:1736298-1736317 | None:intergenic | 55.0% |
| GCCGACACGCTTGTTCTAAC+CGG | + | chr7_2:1736313-1736332 | None:intergenic | 55.0% | |
| ! | GTGAAGCAACCGATTTCGCC+AGG | - | chr7_2:1736490-1736509 | Msa1043540:CDS | 55.0% |
| ! | AAGCAACCGATTTCGCCAGG+TGG | - | chr7_2:1736493-1736512 | Msa1043540:CDS | 55.0% |
| GAACACATGGGAGACTCACG+AGG | - | chr7_2:1736609-1736628 | Msa1043540:CDS | 55.0% | |
| AGTGGAAGAGGGTAGGGCTA+AGG | - | chr7_2:1736741-1736760 | Msa1043540:CDS | 55.0% | |
| CGTCGTGCTTCGTTCCACCT+AGG | - | chr7_2:1736281-1736300 | Msa1043540:CDS | 60.0% | |
| GGAAGAGGGTAGGGCTAAGG+TGG | - | chr7_2:1736744-1736763 | Msa1043540:CDS | 60.0% | |
| AGAGGGTAGGGCTAAGGTGG+AGG | - | chr7_2:1736747-1736766 | Msa1043540:CDS | 60.0% | |
| CGTCGTGCTTCGTTCCACCT+AGG | - | chr7_2:1736281-1736300 | Msa1043540:CDS | 60.0% | |
| GGAAGAGGGTAGGGCTAAGG+TGG | - | chr7_2:1736744-1736763 | Msa1043540:CDS | 60.0% | |
| AGAGGGTAGGGCTAAGGTGG+AGG | - | chr7_2:1736747-1736766 | Msa1043540:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 1735896 | 1736999 | 1735896 | ID=Msa1043540;Name=Msa1043540 |
| chr7_2 | mRNA | 1735896 | 1736999 | 1735896 | ID=Msa1043540-mRNA-1;Parent=Msa1043540;Name=Msa1043540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|367 |
| chr7_2 | exon | 1735896 | 1736999 | 1735896 | ID=Msa1043540-mRNA-1:exon:344;Parent=Msa1043540-mRNA-1 |
| chr7_2 | CDS | 1735896 | 1736999 | 1735896 | ID=Msa1043540-mRNA-1:cds;Parent=Msa1043540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
