Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148190 | XP_013465878.1 | 86.721 | 369 | 44 | 3 | 1 | 366 | 1 | 367 | 1.50e-164 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148190 | sp|Q9LVK2|BIG1A_ARATH | 37.121 | 396 | 155 | 14 | 7 | 367 | 9 | 345 | 5.32e-37 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148190 | A0A072VD40 | 86.721 | 369 | 44 | 3 | 1 | 366 | 1 | 367 | 7.18e-165 | 474 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025060 | Msa0148190 | 0.817087 | 3.955886e-52 | -8.615850e-47 |
| Msa0025090 | Msa0148190 | 0.830057 | 3.638200e-55 | -8.615850e-47 |
| Msa0072590 | Msa0148190 | 0.815376 | 9.542297e-52 | -8.615850e-47 |
| Msa0094840 | Msa0148190 | 0.804449 | 2.148415e-49 | -8.615850e-47 |
| Msa0099090 | Msa0148190 | 0.812810 | 3.514980e-51 | -8.615850e-47 |
| Msa0099480 | Msa0148190 | 0.839775 | 1.294735e-57 | -8.615850e-47 |
| Msa0099580 | Msa0148190 | 0.820630 | 6.195827e-53 | -8.615850e-47 |
| Msa0148000 | Msa0148190 | 0.803578 | 3.260777e-49 | -8.615850e-47 |
| Msa0148190 | Msa0187820 | 0.802965 | 4.367899e-49 | -8.615850e-47 |
| Msa0148190 | Msa0198140 | 0.803362 | 3.615431e-49 | -8.615850e-47 |
| Msa0148190 | Msa0198220 | 0.802834 | 4.647349e-49 | -8.615850e-47 |
| Msa0148190 | Msa0225370 | 0.801306 | 9.581235e-49 | -8.615850e-47 |
| Msa0148190 | Msa0258280 | 0.803472 | 3.429832e-49 | -8.615850e-47 |
| Msa0148190 | Msa0416470 | -0.808041 | 3.762280e-50 | -8.615850e-47 |
| Msa0148190 | Msa0432260 | 0.800658 | 1.300048e-48 | -8.615850e-47 |
| Msa0148190 | Msa0451370 | 0.825286 | 5.092997e-54 | -8.615850e-47 |
| Msa0148190 | Msa0476730 | 0.802606 | 5.181258e-49 | -8.615850e-47 |
| Msa0148190 | Msa0483160 | 0.820515 | 6.587208e-53 | -8.615850e-47 |
| Msa0148190 | Msa0540160 | 0.816404 | 5.627589e-52 | -8.615850e-47 |
| Msa0148190 | Msa0549550 | 0.817969 | 2.503236e-52 | -8.615850e-47 |
| Msa0148190 | Msa0578890 | 0.820187 | 7.830552e-53 | -8.615850e-47 |
| Msa0148190 | Msa0604890 | 0.806732 | 7.131650e-50 | -8.615850e-47 |
| Msa0148190 | Msa0610850 | 0.832749 | 7.913863e-56 | -8.615850e-47 |
| Msa0148190 | Msa0646180 | 0.817772 | 2.772550e-52 | -8.615850e-47 |
| Msa0148190 | Msa0651340 | 0.821783 | 3.360910e-53 | -8.615850e-47 |
| Msa0148190 | Msa0693560 | 0.809423 | 1.905780e-50 | -8.615850e-47 |
| Msa0148190 | Msa0708430 | 0.800819 | 1.205165e-48 | -8.615850e-47 |
| Msa0148190 | Msa0722660 | 0.820940 | 5.258338e-53 | -8.615850e-47 |
| Msa0148190 | Msa0779830 | 0.805819 | 1.110143e-49 | -8.615850e-47 |
| Msa0148190 | Msa0862750 | 0.802668 | 5.029969e-49 | -8.615850e-47 |
| Msa0148190 | Msa0930090 | 0.802403 | 5.704893e-49 | -8.615850e-47 |
| Msa0148190 | Msa1018210 | 0.822200 | 2.690336e-53 | -8.615850e-47 |
| Msa0148190 | Msa1043540 | 0.819238 | 1.290034e-52 | -8.615850e-47 |
| Msa0148190 | Msa1055710 | 0.817492 | 3.205799e-52 | -8.615850e-47 |
| Msa0148190 | Msa1177360 | 0.802830 | 4.656809e-49 | -8.615850e-47 |
| Msa0148190 | Msa1190460 | 0.800857 | 1.183699e-48 | -8.615850e-47 |
| Msa0148190 | Msa1192790 | 0.808020 | 3.802517e-50 | -8.615850e-47 |
| Msa0148190 | Msa1203090 | 0.829646 | 4.581460e-55 | -8.615850e-47 |
| Msa0148190 | Msa1327400 | 0.811247 | 7.700368e-51 | -8.615850e-47 |
| Msa0148190 | Msa1327420 | 0.810708 | 1.007589e-50 | -8.615850e-47 |
| Msa0148190 | Msa1359880 | 0.817885 | 2.614548e-52 | -8.615850e-47 |
| Msa0148190 | Msa1448840 | 0.808056 | 3.735645e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148190 | MtrunA17_Chr1g0150831 | 86.721 | 369 | 44 | 3 | 1 | 366 | 1 | 367 | 1.38e-168 | 474 |
| Msa0148190 | MtrunA17_Chr3g0136111 | 44.390 | 410 | 139 | 15 | 1 | 366 | 1 | 365 | 2.31e-55 | 186 |
| Msa0148190 | MtrunA17_Chr8g0343541 | 40.610 | 426 | 162 | 15 | 1 | 367 | 1 | 394 | 1.80e-34 | 131 |
| Msa0148190 | MtrunA17_Chr4g0070711 | 33.699 | 365 | 180 | 15 | 17 | 366 | 15 | 332 | 9.95e-23 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148190 | AT3G13980.1 | 37.121 | 396 | 155 | 14 | 7 | 367 | 9 | 345 | 5.41e-38 | 140 |
| Msa0148190 | AT1G54200.1 | 38.875 | 391 | 142 | 15 | 17 | 367 | 26 | 359 | 2.54e-34 | 130 |
| Msa0148190 | AT5G12050.1 | 32.746 | 397 | 172 | 13 | 16 | 364 | 7 | 356 | 3.15e-18 | 85.5 |
| Msa0148190 | AT3G42800.1 | 32.308 | 195 | 109 | 5 | 186 | 364 | 140 | 327 | 2.25e-13 | 70.9 |
Find 64 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCTTGTTCTAACCGGTTT+TGG | 0.272024 | 1_4:+8440964 | None:intergenic |
| ATCTGCTTCTTCGTCTTTGT+TGG | 0.273644 | 1_4:+8440682 | None:intergenic |
| CGTCGATGGAACGGTAAATT+TGG | 0.311193 | 1_4:+8441298 | None:intergenic |
| TCCGATACAGATTCATTATA+CGG | 0.335788 | 1_4:-8441027 | Msa0148190:CDS |
| CAAGCGTGTCGGCATCATTT+AGG | 0.345034 | 1_4:-8440948 | Msa0148190:CDS |
| TAGGCTTGAAAAGGAGAAAC+AGG | 0.345846 | 1_4:-8440929 | Msa0148190:CDS |
| CAGTTCTACCTCAATTTCTT+CGG | 0.371586 | 1_4:-8441076 | Msa0148190:CDS |
| TTGGATCATTTGAGTGTGTT+TGG | 0.380923 | 1_4:-8440346 | Msa0148190:CDS |
| TCTGTAAAATTTGGTTGTTT+CGG | 0.392189 | 1_4:+8441254 | None:intergenic |
| GGAAGAGGGTAGGGCTAAGG+TGG | 0.392720 | 1_4:-8440524 | Msa0148190:CDS |
| GCCGACACGCTTGTTCTAAC+CGG | 0.412919 | 1_4:+8440958 | None:intergenic |
| AGAGGGTAGGGCTAAGGTGG+AGG | 0.421619 | 1_4:-8440521 | Msa0148190:CDS |
| GTTGGTTTGTTTAAAATCGT+TGG | 0.424352 | 1_4:+8441222 | None:intergenic |
| TTGTGGAGTGGAAGAGGGTA+GGG | 0.431294 | 1_4:-8440533 | Msa0148190:CDS |
| TAGGTGGAACTTTCTGTTGT+CGG | 0.435349 | 1_4:+8441128 | None:intergenic |
| AGTGGAAGAGGGTAGGGCTA+AGG | 0.442934 | 1_4:-8440527 | Msa0148190:CDS |
| CGTTCCACCTAGGCCAAAAC+CGG | 0.444322 | 1_4:-8440977 | Msa0148190:CDS |
| TGTGAGGAGCTTCCTGTGTA+TGG | 0.451538 | 1_4:-8440310 | Msa0148190:CDS |
| ATTTCTTCGGATTCTAGCTC+CGG | 0.469115 | 1_4:-8441063 | Msa0148190:CDS |
| AACGGTAAATTTGGTCTAAG+AGG | 0.473989 | 1_4:+8441307 | None:intergenic |
| GGCATCATTTAGGCTTGAAA+AGG | 0.486316 | 1_4:-8440938 | Msa0148190:CDS |
| AAGAGGGTGGAAGAGAATGA+AGG | 0.489820 | 1_4:+8441324 | None:intergenic |
| TTTGTGGAGTGGAAGAGGGT+AGG | 0.496413 | 1_4:-8440534 | Msa0148190:CDS |
| TGAGTGTGTTTGGAGATAGT+AGG | 0.500314 | 1_4:-8440336 | Msa0148190:CDS |
| TTTCTCCTTCGTCGATGGAA+CGG | 0.507353 | 1_4:+8441289 | None:intergenic |
| TCTTCTTCTTGTTATAACAT+TGG | 0.508602 | 1_4:+8440470 | None:intergenic |
| ATCATTTCTACCACAAAATG+AGG | 0.508732 | 1_4:+8440573 | None:intergenic |
| AGGGGAATCACGATTTCGAC+AGG | 0.517336 | 1_4:-8440909 | Msa0148190:CDS |
| AGAAAATCACGGCGAGGAAG+CGG | 0.527356 | 1_4:-8440854 | Msa0148190:CDS |
| GTGAAGCAACCGATTTCGCC+AGG | 0.534045 | 1_4:-8440778 | Msa0148190:CDS |
| TGGTAGAAATGATTACAAAA+CGG | 0.535489 | 1_4:-8440563 | Msa0148190:CDS |
| GTAAAATTTGGTTGTTTCGG+CGG | 0.536852 | 1_4:+8441257 | None:intergenic |
| AACTGAAGAACAGAGCATCT+TGG | 0.537118 | 1_4:+8441094 | None:intergenic |
| CGTCGTGCTTCGTTCCACCT+AGG | 0.539775 | 1_4:-8440987 | Msa0148190:CDS |
| CGAAGAAGCAGATGAACACA+TGG | 0.541264 | 1_4:-8440672 | Msa0148190:CDS |
| TGGAGATAGTAGGTATTGTG+AGG | 0.545793 | 1_4:-8440326 | Msa0148190:CDS |
| GCTAGAATCCGAAGAAATTG+AGG | 0.552801 | 1_4:+8441068 | None:intergenic |
| AGAGGGTGGAAGAGAATGAA+GGG | 0.557335 | 1_4:+8441325 | None:intergenic |
| TAATGAATCTGTATCGGAGG+AGG | 0.579684 | 1_4:+8441032 | None:intergenic |
| TCCGTATAATGAATCTGTAT+CGG | 0.585229 | 1_4:+8441026 | None:intergenic |
| AAGGGTTTATGAACCTCTCG+TGG | 0.590814 | 1_4:+8441343 | None:intergenic |
| TCTTCGGATTCTAGCTCCGG+TGG | 0.592579 | 1_4:-8441060 | Msa0148190:CDS |
| ACGGTAAATTTGGTCTAAGA+GGG | 0.594369 | 1_4:+8441308 | None:intergenic |
| ATCGGAGGAGGAGAATCCAC+CGG | 0.611196 | 1_4:+8441044 | None:intergenic |
| AATAAAGAACAAATCAAGAG+CGG | 0.611789 | 1_4:-8440827 | Msa0148190:CDS |
| GTAAATTTGGTCTAAGAGGG+TGG | 0.617354 | 1_4:+8441311 | None:intergenic |
| CTTGGTCGTGATCACGTAGG+TGG | 0.626477 | 1_4:+8441112 | None:intergenic |
| GAACACATGGGAGACTCACG+AGG | 0.626492 | 1_4:-8440659 | Msa0148190:CDS |
| AGGCTTGAAAAGGAGAAACA+GGG | 0.627580 | 1_4:-8440928 | Msa0148190:CDS |
| GGATGAAGATGATGATGATG+TGG | 0.631674 | 1_4:-8440398 | Msa0148190:CDS |
| ATTTACCGTTCCATCGACGA+AGG | 0.641766 | 1_4:-8441294 | Msa0148190:CDS |
| CGAAGAAGCAGATGAACACG+TGG | 0.648153 | 1_4:+8440624 | None:intergenic |
| ACCGGTTAGAACAAGCGTGT+CGG | 0.655186 | 1_4:-8440959 | Msa0148190:CDS |
| GGCTTGAAAAGGAGAAACAG+GGG | 0.655509 | 1_4:-8440927 | Msa0148190:CDS |
| ATTTCTACCACAAAATGAGG+CGG | 0.655870 | 1_4:+8440576 | None:intergenic |
| AAACAAAGCTCAGAAAATCA+CGG | 0.657947 | 1_4:-8440865 | Msa0148190:CDS |
| AAGCAACCGATTTCGCCAGG+TGG | 0.662604 | 1_4:-8440775 | Msa0148190:CDS |
| GTATAATGAATCTGTATCGG+AGG | 0.669558 | 1_4:+8441029 | None:intergenic |
| ACACGAGTAGTTCCATACAC+AGG | 0.691654 | 1_4:+8440298 | None:intergenic |
| AGAGATCAACAAACCACGAG+AGG | 0.700583 | 1_4:-8441356 | Msa0148190:CDS |
| AAGCTCAGAAAATCACGGCG+AGG | 0.715991 | 1_4:-8440860 | Msa0148190:CDS |
| CATCTTGGTCGTGATCACGT+AGG | 0.729154 | 1_4:+8441109 | None:intergenic |
| GAAGAAGCAGATGAACACAT+GGG | 0.731435 | 1_4:-8440671 | Msa0148190:CDS |
| AACACATGGGAGACTCACGA+GGG | 0.759784 | 1_4:-8440658 | Msa0148190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATGATTTAGTTTTATTAA+AGG | - | chr1_4:8441214-8441233 | Msa0148190:CDS | 15.0% |
| !!! | GAATGATTTAGTTTTATTAA+AGG | - | chr1_4:8441214-8441233 | Msa0148190:CDS | 15.0% |
| !!! | TTTTTGTTCTCTGTAAAATT+TGG | + | chr1_4:8440421-8440440 | None:intergenic | 20.0% |
| !! | TATTAATCAAAAAGAAGAAG+AGG | - | chr1_4:8441244-8441263 | Msa0148190:CDS | 20.0% |
| !!! | TTTTTGTTCTCTGTAAAATT+TGG | + | chr1_4:8440421-8440440 | None:intergenic | 20.0% |
| !! | TATTAATCAAAAAGAAGAAG+AGG | - | chr1_4:8441244-8441263 | Msa0148190:CDS | 20.0% |
| ! | TCTGTAAAATTTGGTTGTTT+CGG | + | chr1_4:8440412-8440431 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGTTTTTGGTTTG+TGG | + | chr1_4:8440494-8440513 | None:intergenic | 25.0% |
| !!! | GAAACAGTTTTTTCTGTTTT+TGG | + | chr1_4:8440501-8440520 | None:intergenic | 25.0% |
| ! | AATAAAGAACAAATCAAGAG+CGG | - | chr1_4:8440836-8440855 | Msa0148190:CDS | 25.0% |
| ! | TGGTAGAAATGATTACAAAA+CGG | - | chr1_4:8441100-8441119 | Msa0148190:CDS | 25.0% |
| !! | TCTTCTTCTTGTTATAACAT+TGG | + | chr1_4:8441196-8441215 | None:intergenic | 25.0% |
| ! | TCTGTAAAATTTGGTTGTTT+CGG | + | chr1_4:8440412-8440431 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGTTTTTGGTTTG+TGG | + | chr1_4:8440494-8440513 | None:intergenic | 25.0% |
| !!! | GAAACAGTTTTTTCTGTTTT+TGG | + | chr1_4:8440501-8440520 | None:intergenic | 25.0% |
| ! | AATAAAGAACAAATCAAGAG+CGG | - | chr1_4:8440836-8440855 | Msa0148190:CDS | 25.0% |
| ! | TGGTAGAAATGATTACAAAA+CGG | - | chr1_4:8441100-8441119 | Msa0148190:CDS | 25.0% |
| !! | TCTTCTTCTTGTTATAACAT+TGG | + | chr1_4:8441196-8441215 | None:intergenic | 25.0% |
| !! | GTTGGTTTGTTTAAAATCGT+TGG | + | chr1_4:8440444-8440463 | None:intergenic | 30.0% |
| TCCGATACAGATTCATTATA+CGG | - | chr1_4:8440636-8440655 | Msa0148190:CDS | 30.0% | |
| TCCGTATAATGAATCTGTAT+CGG | + | chr1_4:8440640-8440659 | None:intergenic | 30.0% | |
| AAACAAAGCTCAGAAAATCA+CGG | - | chr1_4:8440798-8440817 | Msa0148190:CDS | 30.0% | |
| ATCATTTCTACCACAAAATG+AGG | + | chr1_4:8441093-8441112 | None:intergenic | 30.0% | |
| !!! | AAGTTCTGATCTTTTTGAGT+TGG | - | chr1_4:8441298-8441317 | Msa0148190:CDS | 30.0% |
| !! | GTTGGTTTGTTTAAAATCGT+TGG | + | chr1_4:8440444-8440463 | None:intergenic | 30.0% |
| TCCGATACAGATTCATTATA+CGG | - | chr1_4:8440636-8440655 | Msa0148190:CDS | 30.0% | |
| TCCGTATAATGAATCTGTAT+CGG | + | chr1_4:8440640-8440659 | None:intergenic | 30.0% | |
| AAACAAAGCTCAGAAAATCA+CGG | - | chr1_4:8440798-8440817 | Msa0148190:CDS | 30.0% | |
| ATCATTTCTACCACAAAATG+AGG | + | chr1_4:8441093-8441112 | None:intergenic | 30.0% | |
| !!! | AAGTTCTGATCTTTTTGAGT+TGG | - | chr1_4:8441298-8441317 | Msa0148190:CDS | 30.0% |
| ACGGTAAATTTGGTCTAAGA+GGG | + | chr1_4:8440358-8440377 | None:intergenic | 35.0% | |
| AACGGTAAATTTGGTCTAAG+AGG | + | chr1_4:8440359-8440378 | None:intergenic | 35.0% | |
| ! | GTAAAATTTGGTTGTTTCGG+CGG | + | chr1_4:8440409-8440428 | None:intergenic | 35.0% |
| !!! | TTATGTTTTGTGTCGGTTGT+TGG | + | chr1_4:8440462-8440481 | None:intergenic | 35.0% |
| !!! | GTTGGTGTTATGTTTTGTGT+CGG | + | chr1_4:8440469-8440488 | None:intergenic | 35.0% |
| !!! | TGTTTTTGGTTTGTGGTTGT+TGG | + | chr1_4:8440487-8440506 | None:intergenic | 35.0% |
| CAGTTCTACCTCAATTTCTT+CGG | - | chr1_4:8440587-8440606 | Msa0148190:CDS | 35.0% | |
| GTATAATGAATCTGTATCGG+AGG | + | chr1_4:8440637-8440656 | None:intergenic | 35.0% | |
| ATTTCTACCACAAAATGAGG+CGG | + | chr1_4:8441090-8441109 | None:intergenic | 35.0% | |
| ! | TACAAAACGGTACGTTTTTG+TGG | - | chr1_4:8441113-8441132 | Msa0148190:CDS | 35.0% |
| TTGGATCATTTGAGTGTGTT+TGG | - | chr1_4:8441317-8441336 | Msa0148190:CDS | 35.0% | |
| ACGGTAAATTTGGTCTAAGA+GGG | + | chr1_4:8440358-8440377 | None:intergenic | 35.0% | |
| AACGGTAAATTTGGTCTAAG+AGG | + | chr1_4:8440359-8440378 | None:intergenic | 35.0% | |
| ! | GTAAAATTTGGTTGTTTCGG+CGG | + | chr1_4:8440409-8440428 | None:intergenic | 35.0% |
| !!! | TTATGTTTTGTGTCGGTTGT+TGG | + | chr1_4:8440462-8440481 | None:intergenic | 35.0% |
| !!! | GTTGGTGTTATGTTTTGTGT+CGG | + | chr1_4:8440469-8440488 | None:intergenic | 35.0% |
| !!! | TGTTTTTGGTTTGTGGTTGT+TGG | + | chr1_4:8440487-8440506 | None:intergenic | 35.0% |
| CAGTTCTACCTCAATTTCTT+CGG | - | chr1_4:8440587-8440606 | Msa0148190:CDS | 35.0% | |
| GTATAATGAATCTGTATCGG+AGG | + | chr1_4:8440637-8440656 | None:intergenic | 35.0% | |
| ATTTCTACCACAAAATGAGG+CGG | + | chr1_4:8441090-8441109 | None:intergenic | 35.0% | |
| ! | TACAAAACGGTACGTTTTTG+TGG | - | chr1_4:8441113-8441132 | Msa0148190:CDS | 35.0% |
| TTGGATCATTTGAGTGTGTT+TGG | - | chr1_4:8441317-8441336 | Msa0148190:CDS | 35.0% | |
| GTAAATTTGGTCTAAGAGGG+TGG | + | chr1_4:8440355-8440374 | None:intergenic | 40.0% | |
| !! | TTTTGTTTCTCCTTCGTCGA+TGG | + | chr1_4:8440382-8440401 | None:intergenic | 40.0% |
| TAGGTGGAACTTTCTGTTGT+CGG | + | chr1_4:8440538-8440557 | None:intergenic | 40.0% | |
| ! | AACTGAAGAACAGAGCATCT+TGG | + | chr1_4:8440572-8440591 | None:intergenic | 40.0% |
| GCTAGAATCCGAAGAAATTG+AGG | + | chr1_4:8440598-8440617 | None:intergenic | 40.0% | |
| !! | ATTTCTTCGGATTCTAGCTC+CGG | - | chr1_4:8440600-8440619 | Msa0148190:CDS | 40.0% |
| TAATGAATCTGTATCGGAGG+AGG | + | chr1_4:8440634-8440653 | None:intergenic | 40.0% | |
| GGCATCATTTAGGCTTGAAA+AGG | - | chr1_4:8440725-8440744 | Msa0148190:CDS | 40.0% | |
| TAGGCTTGAAAAGGAGAAAC+AGG | - | chr1_4:8440734-8440753 | Msa0148190:CDS | 40.0% | |
| AGGCTTGAAAAGGAGAAACA+GGG | - | chr1_4:8440735-8440754 | Msa0148190:CDS | 40.0% | |
| ! | AAACTAGTGAGTTTTCCACC+TGG | + | chr1_4:8440906-8440925 | None:intergenic | 40.0% |
| ATCTGCTTCTTCGTCTTTGT+TGG | + | chr1_4:8440984-8441003 | None:intergenic | 40.0% | |
| GAAGAAGCAGATGAACACAT+GGG | - | chr1_4:8440992-8441011 | Msa0148190:CDS | 40.0% | |
| ! | GGATGAAGATGATGATGATG+TGG | - | chr1_4:8441265-8441284 | Msa0148190:CDS | 40.0% |
| TGAGTGTGTTTGGAGATAGT+AGG | - | chr1_4:8441327-8441346 | Msa0148190:CDS | 40.0% | |
| ! | TGGAGATAGTAGGTATTGTG+AGG | - | chr1_4:8441337-8441356 | Msa0148190:CDS | 40.0% |
| GTAAATTTGGTCTAAGAGGG+TGG | + | chr1_4:8440355-8440374 | None:intergenic | 40.0% | |
| !! | TTTTGTTTCTCCTTCGTCGA+TGG | + | chr1_4:8440382-8440401 | None:intergenic | 40.0% |
| TAGGTGGAACTTTCTGTTGT+CGG | + | chr1_4:8440538-8440557 | None:intergenic | 40.0% | |
| ! | AACTGAAGAACAGAGCATCT+TGG | + | chr1_4:8440572-8440591 | None:intergenic | 40.0% |
| GCTAGAATCCGAAGAAATTG+AGG | + | chr1_4:8440598-8440617 | None:intergenic | 40.0% | |
| !! | ATTTCTTCGGATTCTAGCTC+CGG | - | chr1_4:8440600-8440619 | Msa0148190:CDS | 40.0% |
| TAATGAATCTGTATCGGAGG+AGG | + | chr1_4:8440634-8440653 | None:intergenic | 40.0% | |
| GGCATCATTTAGGCTTGAAA+AGG | - | chr1_4:8440725-8440744 | Msa0148190:CDS | 40.0% | |
| TAGGCTTGAAAAGGAGAAAC+AGG | - | chr1_4:8440734-8440753 | Msa0148190:CDS | 40.0% | |
| AGGCTTGAAAAGGAGAAACA+GGG | - | chr1_4:8440735-8440754 | Msa0148190:CDS | 40.0% | |
| ! | AAACTAGTGAGTTTTCCACC+TGG | + | chr1_4:8440906-8440925 | None:intergenic | 40.0% |
| ATCTGCTTCTTCGTCTTTGT+TGG | + | chr1_4:8440984-8441003 | None:intergenic | 40.0% | |
| GAAGAAGCAGATGAACACAT+GGG | - | chr1_4:8440992-8441011 | Msa0148190:CDS | 40.0% | |
| ! | GGATGAAGATGATGATGATG+TGG | - | chr1_4:8441265-8441284 | Msa0148190:CDS | 40.0% |
| TGAGTGTGTTTGGAGATAGT+AGG | - | chr1_4:8441327-8441346 | Msa0148190:CDS | 40.0% | |
| ! | TGGAGATAGTAGGTATTGTG+AGG | - | chr1_4:8441337-8441356 | Msa0148190:CDS | 40.0% |
| AGAGATCAACAAACCACGAG+AGG | - | chr1_4:8440307-8440326 | Msa0148190:CDS | 45.0% | |
| AAGGGTTTATGAACCTCTCG+TGG | + | chr1_4:8440323-8440342 | None:intergenic | 45.0% | |
| AGAGGGTGGAAGAGAATGAA+GGG | + | chr1_4:8440341-8440360 | None:intergenic | 45.0% | |
| AAGAGGGTGGAAGAGAATGA+AGG | + | chr1_4:8440342-8440361 | None:intergenic | 45.0% | |
| CGTCGATGGAACGGTAAATT+TGG | + | chr1_4:8440368-8440387 | None:intergenic | 45.0% | |
| ATTTACCGTTCCATCGACGA+AGG | - | chr1_4:8440369-8440388 | Msa0148190:CDS | 45.0% | |
| TTTCTCCTTCGTCGATGGAA+CGG | + | chr1_4:8440377-8440396 | None:intergenic | 45.0% | |
| !! | ACGCTTGTTCTAACCGGTTT+TGG | + | chr1_4:8440702-8440721 | None:intergenic | 45.0% |
| GGCTTGAAAAGGAGAAACAG+GGG | - | chr1_4:8440736-8440755 | Msa0148190:CDS | 45.0% | |
| ! | AGTTTTCCACCTGGCGAAAT+CGG | + | chr1_4:8440897-8440916 | None:intergenic | 45.0% |
| CGAAGAAGCAGATGAACACA+TGG | - | chr1_4:8440991-8441010 | Msa0148190:CDS | 45.0% | |
| ! | CATCTGCTTCTTCGTTTTCG+CGG | - | chr1_4:8441048-8441067 | Msa0148190:CDS | 45.0% |
| ! | AGCAAAACCGCCTCATTTTG+TGG | - | chr1_4:8441080-8441099 | Msa0148190:CDS | 45.0% |
| ! | AACGGTACGTTTTTGTGGAG+TGG | - | chr1_4:8441118-8441137 | Msa0148190:CDS | 45.0% |
| ! | ACGTTTTTGTGGAGTGGAAG+AGG | - | chr1_4:8441124-8441143 | Msa0148190:CDS | 45.0% |
| ! | CGTTTTTGTGGAGTGGAAGA+GGG | - | chr1_4:8441125-8441144 | Msa0148190:CDS | 45.0% |
| ACACGAGTAGTTCCATACAC+AGG | + | chr1_4:8441368-8441387 | None:intergenic | 45.0% | |
| AGAGATCAACAAACCACGAG+AGG | - | chr1_4:8440307-8440326 | Msa0148190:CDS | 45.0% | |
| AAGGGTTTATGAACCTCTCG+TGG | + | chr1_4:8440323-8440342 | None:intergenic | 45.0% | |
| AGAGGGTGGAAGAGAATGAA+GGG | + | chr1_4:8440341-8440360 | None:intergenic | 45.0% | |
| AAGAGGGTGGAAGAGAATGA+AGG | + | chr1_4:8440342-8440361 | None:intergenic | 45.0% | |
| CGTCGATGGAACGGTAAATT+TGG | + | chr1_4:8440368-8440387 | None:intergenic | 45.0% | |
| ATTTACCGTTCCATCGACGA+AGG | - | chr1_4:8440369-8440388 | Msa0148190:CDS | 45.0% | |
| TTTCTCCTTCGTCGATGGAA+CGG | + | chr1_4:8440377-8440396 | None:intergenic | 45.0% | |
| !! | ACGCTTGTTCTAACCGGTTT+TGG | + | chr1_4:8440702-8440721 | None:intergenic | 45.0% |
| GGCTTGAAAAGGAGAAACAG+GGG | - | chr1_4:8440736-8440755 | Msa0148190:CDS | 45.0% | |
| ! | AGTTTTCCACCTGGCGAAAT+CGG | + | chr1_4:8440897-8440916 | None:intergenic | 45.0% |
| CGAAGAAGCAGATGAACACA+TGG | - | chr1_4:8440991-8441010 | Msa0148190:CDS | 45.0% | |
| ! | CATCTGCTTCTTCGTTTTCG+CGG | - | chr1_4:8441048-8441067 | Msa0148190:CDS | 45.0% |
| ! | AGCAAAACCGCCTCATTTTG+TGG | - | chr1_4:8441080-8441099 | Msa0148190:CDS | 45.0% |
| ! | AACGGTACGTTTTTGTGGAG+TGG | - | chr1_4:8441118-8441137 | Msa0148190:CDS | 45.0% |
| ! | ACGTTTTTGTGGAGTGGAAG+AGG | - | chr1_4:8441124-8441143 | Msa0148190:CDS | 45.0% |
| ! | CGTTTTTGTGGAGTGGAAGA+GGG | - | chr1_4:8441125-8441144 | Msa0148190:CDS | 45.0% |
| ACACGAGTAGTTCCATACAC+AGG | + | chr1_4:8441368-8441387 | None:intergenic | 45.0% | |
| CATCTTGGTCGTGATCACGT+AGG | + | chr1_4:8440557-8440576 | None:intergenic | 50.0% | |
| !! | GTTCTAACCGGTTTTGGCCT+AGG | + | chr1_4:8440696-8440715 | None:intergenic | 50.0% |
| ACCGGTTAGAACAAGCGTGT+CGG | - | chr1_4:8440704-8440723 | Msa0148190:CDS | 50.0% | |
| ! | CAAGCGTGTCGGCATCATTT+AGG | - | chr1_4:8440715-8440734 | Msa0148190:CDS | 50.0% |
| AGGGGAATCACGATTTCGAC+AGG | - | chr1_4:8440754-8440773 | Msa0148190:CDS | 50.0% | |
| AAGCTCAGAAAATCACGGCG+AGG | - | chr1_4:8440803-8440822 | Msa0148190:CDS | 50.0% | |
| AGAAAATCACGGCGAGGAAG+CGG | - | chr1_4:8440809-8440828 | Msa0148190:CDS | 50.0% | |
| AACACATGGGAGACTCACGA+GGG | - | chr1_4:8441005-8441024 | Msa0148190:CDS | 50.0% | |
| CGAAGAAGCAGATGAACACG+TGG | + | chr1_4:8441042-8441061 | None:intergenic | 50.0% | |
| TTTGTGGAGTGGAAGAGGGT+AGG | - | chr1_4:8441129-8441148 | Msa0148190:CDS | 50.0% | |
| TTGTGGAGTGGAAGAGGGTA+GGG | - | chr1_4:8441130-8441149 | Msa0148190:CDS | 50.0% | |
| TGTGAGGAGCTTCCTGTGTA+TGG | - | chr1_4:8441353-8441372 | Msa0148190:CDS | 50.0% | |
| CATCTTGGTCGTGATCACGT+AGG | + | chr1_4:8440557-8440576 | None:intergenic | 50.0% | |
| !! | GTTCTAACCGGTTTTGGCCT+AGG | + | chr1_4:8440696-8440715 | None:intergenic | 50.0% |
| ACCGGTTAGAACAAGCGTGT+CGG | - | chr1_4:8440704-8440723 | Msa0148190:CDS | 50.0% | |
| ! | CAAGCGTGTCGGCATCATTT+AGG | - | chr1_4:8440715-8440734 | Msa0148190:CDS | 50.0% |
| AGGGGAATCACGATTTCGAC+AGG | - | chr1_4:8440754-8440773 | Msa0148190:CDS | 50.0% | |
| AAGCTCAGAAAATCACGGCG+AGG | - | chr1_4:8440803-8440822 | Msa0148190:CDS | 50.0% | |
| AGAAAATCACGGCGAGGAAG+CGG | - | chr1_4:8440809-8440828 | Msa0148190:CDS | 50.0% | |
| AACACATGGGAGACTCACGA+GGG | - | chr1_4:8441005-8441024 | Msa0148190:CDS | 50.0% | |
| CGAAGAAGCAGATGAACACG+TGG | + | chr1_4:8441042-8441061 | None:intergenic | 50.0% | |
| TTTGTGGAGTGGAAGAGGGT+AGG | - | chr1_4:8441129-8441148 | Msa0148190:CDS | 50.0% | |
| TTGTGGAGTGGAAGAGGGTA+GGG | - | chr1_4:8441130-8441149 | Msa0148190:CDS | 50.0% | |
| TGTGAGGAGCTTCCTGTGTA+TGG | - | chr1_4:8441353-8441372 | Msa0148190:CDS | 50.0% | |
| CTTGGTCGTGATCACGTAGG+TGG | + | chr1_4:8440554-8440573 | None:intergenic | 55.0% | |
| !! | TCTTCGGATTCTAGCTCCGG+TGG | - | chr1_4:8440603-8440622 | Msa0148190:CDS | 55.0% |
| ATCGGAGGAGGAGAATCCAC+CGG | + | chr1_4:8440622-8440641 | None:intergenic | 55.0% | |
| CGTTCCACCTAGGCCAAAAC+CGG | - | chr1_4:8440686-8440705 | Msa0148190:CDS | 55.0% | |
| !! | CTAACCGGTTTTGGCCTAGG+TGG | + | chr1_4:8440693-8440712 | None:intergenic | 55.0% |
| GCCGACACGCTTGTTCTAAC+CGG | + | chr1_4:8440708-8440727 | None:intergenic | 55.0% | |
| ! | GTGAAGCAACCGATTTCGCC+AGG | - | chr1_4:8440885-8440904 | Msa0148190:CDS | 55.0% |
| ! | AAGCAACCGATTTCGCCAGG+TGG | - | chr1_4:8440888-8440907 | Msa0148190:CDS | 55.0% |
| GAACACATGGGAGACTCACG+AGG | - | chr1_4:8441004-8441023 | Msa0148190:CDS | 55.0% | |
| AGTGGAAGAGGGTAGGGCTA+AGG | - | chr1_4:8441136-8441155 | Msa0148190:CDS | 55.0% | |
| CTTGGTCGTGATCACGTAGG+TGG | + | chr1_4:8440554-8440573 | None:intergenic | 55.0% | |
| !! | TCTTCGGATTCTAGCTCCGG+TGG | - | chr1_4:8440603-8440622 | Msa0148190:CDS | 55.0% |
| ATCGGAGGAGGAGAATCCAC+CGG | + | chr1_4:8440622-8440641 | None:intergenic | 55.0% | |
| CGTTCCACCTAGGCCAAAAC+CGG | - | chr1_4:8440686-8440705 | Msa0148190:CDS | 55.0% | |
| !! | CTAACCGGTTTTGGCCTAGG+TGG | + | chr1_4:8440693-8440712 | None:intergenic | 55.0% |
| GCCGACACGCTTGTTCTAAC+CGG | + | chr1_4:8440708-8440727 | None:intergenic | 55.0% | |
| ! | GTGAAGCAACCGATTTCGCC+AGG | - | chr1_4:8440885-8440904 | Msa0148190:CDS | 55.0% |
| ! | AAGCAACCGATTTCGCCAGG+TGG | - | chr1_4:8440888-8440907 | Msa0148190:CDS | 55.0% |
| GAACACATGGGAGACTCACG+AGG | - | chr1_4:8441004-8441023 | Msa0148190:CDS | 55.0% | |
| AGTGGAAGAGGGTAGGGCTA+AGG | - | chr1_4:8441136-8441155 | Msa0148190:CDS | 55.0% | |
| CGTCGTGCTTCGTTCCACCT+AGG | - | chr1_4:8440676-8440695 | Msa0148190:CDS | 60.0% | |
| GGAAGAGGGTAGGGCTAAGG+TGG | - | chr1_4:8441139-8441158 | Msa0148190:CDS | 60.0% | |
| AGAGGGTAGGGCTAAGGTGG+AGG | - | chr1_4:8441142-8441161 | Msa0148190:CDS | 60.0% | |
| CGTCGTGCTTCGTTCCACCT+AGG | - | chr1_4:8440676-8440695 | Msa0148190:CDS | 60.0% | |
| GGAAGAGGGTAGGGCTAAGG+TGG | - | chr1_4:8441139-8441158 | Msa0148190:CDS | 60.0% | |
| AGAGGGTAGGGCTAAGGTGG+AGG | - | chr1_4:8441142-8441161 | Msa0148190:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 8440291 | 8441394 | 8440291 | ID=Msa0148190;Name=Msa0148190 |
| chr1_4 | mRNA | 8440291 | 8441394 | 8440291 | ID=Msa0148190-mRNA-1;Parent=Msa0148190;Name=Msa0148190-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|367 |
| chr1_4 | exon | 8440291 | 8441394 | 8440291 | ID=Msa0148190-mRNA-1:exon:3637;Parent=Msa0148190-mRNA-1 |
| chr1_4 | CDS | 8440291 | 8441394 | 8440291 | ID=Msa0148190-mRNA-1:cds;Parent=Msa0148190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
