Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119830 | XP_013467860.1 | 96.283 | 807 | 30 | 0 | 1 | 807 | 1 | 807 | 0.0 | 1619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119830 | sp|Q9SVD0|SMXL3_ARATH | 53.702 | 851 | 307 | 22 | 1 | 804 | 1 | 811 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119830 | A0A072VJF0 | 96.283 | 807 | 30 | 0 | 1 | 807 | 1 | 807 | 0.0 | 1619 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0119830 | 0.814820 | 1.268136e-51 | -8.615850e-47 |
| Msa0001960 | Msa0119830 | 0.810665 | 1.029632e-50 | -8.615850e-47 |
| Msa0002580 | Msa0119830 | 0.847764 | 9.408068e-60 | -8.615850e-47 |
| Msa0034810 | Msa0119830 | 0.806697 | 7.254800e-50 | -8.615850e-47 |
| Msa0119830 | Msa0244640 | 0.821973 | 3.036168e-53 | -8.615850e-47 |
| Msa0119830 | Msa0321620 | 0.812271 | 4.610151e-51 | -8.615850e-47 |
| Msa0119830 | Msa0436910 | 0.850130 | 2.071747e-60 | -8.615850e-47 |
| Msa0119830 | Msa0611210 | 0.802576 | 5.254085e-49 | -8.615850e-47 |
| Msa0119830 | Msa0829300 | 0.804026 | 2.631940e-49 | -8.615850e-47 |
| Msa0119830 | Msa0829330 | 0.807455 | 5.012197e-50 | -8.615850e-47 |
| Msa0119830 | Msa0935820 | 0.807160 | 5.790199e-50 | -8.615850e-47 |
| Msa0119830 | Msa1096960 | 0.807924 | 3.984936e-50 | -8.615850e-47 |
| Msa0119830 | Msa1193170 | 0.800319 | 1.524080e-48 | -8.615850e-47 |
| Msa0119830 | Msa1265650 | 0.846233 | 2.469777e-59 | -8.615850e-47 |
| Msa0119830 | Msa1297230 | 0.805917 | 1.058960e-49 | -8.615850e-47 |
| Msa0119830 | Msa1303560 | 0.827779 | 1.295594e-54 | -8.615850e-47 |
| Msa0119830 | Msa1303650 | 0.831592 | 1.529568e-55 | -8.615850e-47 |
| Msa0119830 | Msa1313280 | 0.811144 | 8.107246e-51 | -8.615850e-47 |
| Msa0119830 | Msa1314650 | 0.800208 | 1.605113e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119830 | MtrunA17_Chr1g0177421 | 96.283 | 807 | 30 | 0 | 1 | 807 | 1 | 807 | 0.0 | 1619 |
| Msa0119830 | MtrunA17_Chr1g0197121 | 52.039 | 515 | 206 | 12 | 1 | 488 | 1 | 501 | 7.10e-159 | 484 |
| Msa0119830 | MtrunA17_Chr1g0197121 | 44.981 | 269 | 117 | 9 | 548 | 803 | 597 | 847 | 2.73e-51 | 193 |
| Msa0119830 | MtrunA17_Chr2g0298801 | 34.453 | 804 | 385 | 31 | 1 | 708 | 1 | 758 | 1.14e-102 | 340 |
| Msa0119830 | MtrunA17_Chr4g0073021 | 31.629 | 841 | 436 | 25 | 1 | 731 | 1 | 812 | 4.92e-101 | 336 |
| Msa0119830 | MtrunA17_Chr4g0071701 | 63.102 | 187 | 49 | 5 | 1 | 177 | 1 | 177 | 1.73e-59 | 216 |
| Msa0119830 | MtrunA17_Chr3g0105051 | 26.217 | 534 | 308 | 20 | 1 | 478 | 1 | 504 | 1.90e-29 | 126 |
| Msa0119830 | MtrunA17_Chr3g0105051 | 27.948 | 229 | 154 | 4 | 510 | 735 | 623 | 843 | 4.68e-14 | 76.6 |
| Msa0119830 | MtrunA17_Chr3g0113631 | 29.383 | 405 | 231 | 16 | 1 | 380 | 1 | 375 | 1.49e-28 | 123 |
| Msa0119830 | MtrunA17_Chr3g0113631 | 29.714 | 175 | 109 | 3 | 561 | 735 | 686 | 846 | 4.52e-14 | 76.6 |
| Msa0119830 | MtrunA17_Chr5g0430201 | 29.327 | 416 | 224 | 13 | 1 | 385 | 1 | 377 | 5.53e-27 | 118 |
| Msa0119830 | MtrunA17_Chr5g0430201 | 27.556 | 225 | 156 | 4 | 510 | 731 | 625 | 845 | 6.26e-15 | 79.3 |
| Msa0119830 | MtrunA17_Chr4g0061371 | 28.239 | 301 | 182 | 11 | 26 | 320 | 20 | 292 | 4.16e-22 | 102 |
| Msa0119830 | MtrunA17_Chr7g0225161 | 25.773 | 291 | 183 | 9 | 23 | 308 | 17 | 279 | 3.29e-16 | 83.6 |
| Msa0119830 | MtrunA17_Chr7g0235711 | 28.481 | 158 | 99 | 3 | 560 | 717 | 90 | 233 | 5.35e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119830 | AT3G52490.1 | 53.702 | 851 | 307 | 22 | 1 | 804 | 1 | 811 | 0.0 | 793 |
| Msa0119830 | AT4G29920.2 | 33.747 | 806 | 384 | 30 | 1 | 697 | 1 | 765 | 2.30e-97 | 326 |
| Msa0119830 | AT5G57710.1 | 31.081 | 888 | 453 | 26 | 1 | 780 | 1 | 837 | 1.11e-96 | 323 |
| Msa0119830 | AT5G57130.1 | 31.824 | 839 | 372 | 32 | 1 | 697 | 1 | 781 | 4.83e-96 | 322 |
| Msa0119830 | AT4G30350.1 | 33.172 | 826 | 400 | 19 | 1 | 765 | 1 | 735 | 3.10e-95 | 318 |
| Msa0119830 | AT4G29920.1 | 33.250 | 803 | 389 | 29 | 1 | 697 | 1 | 762 | 3.61e-95 | 320 |
| Msa0119830 | AT2G29970.1 | 24.606 | 825 | 481 | 27 | 1 | 729 | 1 | 780 | 1.15e-48 | 186 |
| Msa0119830 | AT1G07200.2 | 24.453 | 822 | 477 | 27 | 1 | 731 | 1 | 769 | 2.42e-48 | 185 |
| Msa0119830 | AT2G40130.2 | 25.543 | 783 | 443 | 24 | 1 | 734 | 1 | 692 | 7.38e-47 | 181 |
| Msa0119830 | AT2G40130.1 | 25.638 | 784 | 438 | 25 | 1 | 734 | 1 | 689 | 1.61e-46 | 179 |
| Msa0119830 | AT1G74310.2 | 28.616 | 318 | 187 | 11 | 12 | 320 | 6 | 292 | 1.95e-20 | 97.4 |
| Msa0119830 | AT1G74310.1 | 28.616 | 318 | 187 | 11 | 12 | 320 | 6 | 292 | 2.39e-20 | 97.1 |
| Msa0119830 | AT1G07200.1 | 22.674 | 172 | 115 | 3 | 560 | 731 | 59 | 212 | 5.19e-11 | 66.2 |
Find 123 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTTCTCTTTCTGATTT+TGG | 0.071320 | 1_3:+44141778 | Msa0119830:CDS |
| AAAGATTCTCTTCAAATTTC+AGG | 0.131153 | 1_3:+44144421 | Msa0119830:CDS |
| CATTGGTATTGGATCCAATT+AGG | 0.134783 | 1_3:+44141590 | Msa0119830:CDS |
| GGATATTATGTACTTCTTTA+AGG | 0.140522 | 1_3:-44140949 | None:intergenic |
| ATCCATCACTTGAGACTATT+TGG | 0.173857 | 1_3:+44142076 | Msa0119830:CDS |
| TCACTAGAAGTGGTTGAATT+AGG | 0.179217 | 1_3:-44143633 | None:intergenic |
| GATAATGGAGATTGGAAAAT+TGG | 0.186851 | 1_3:+44141972 | Msa0119830:CDS |
| TCTTGAGATGATCTTTGTTT+TGG | 0.222106 | 1_3:-44144254 | None:intergenic |
| ATGCAATGCTTTGGAGAAAA+AGG | 0.237090 | 1_3:+44143719 | Msa0119830:CDS |
| TGTTGAACAAGCTGTTTCTT+TGG | 0.237988 | 1_3:+44141480 | Msa0119830:CDS |
| GATAGATTGGTGGATGAAAT+TGG | 0.256106 | 1_3:+44144377 | Msa0119830:CDS |
| TTGATATCATCAACCCTAAT+TGG | 0.256597 | 1_3:-44141604 | None:intergenic |
| GACAAGTTCTTATGTTTCTT+TGG | 0.259034 | 1_3:+44144316 | Msa0119830:CDS |
| AGTTTCCCGTTCTCATCTTT+AGG | 0.285635 | 1_3:-44140970 | None:intergenic |
| TGTATCTTGGAGATCTAAAA+TGG | 0.296734 | 1_3:+44141887 | Msa0119830:CDS |
| TCCTTTGGATCACATGATAA+TGG | 0.304776 | 1_3:+44141957 | Msa0119830:CDS |
| GAGATTGGAAAATTGGTTAA+TGG | 0.306808 | 1_3:+44141979 | Msa0119830:CDS |
| TTGGAGAATGTGGAAGGTTT+TGG | 0.308816 | 1_3:+44142004 | Msa0119830:CDS |
| TGTACTTATATTGAAAGATT+TGG | 0.311616 | 1_3:+44144032 | Msa0119830:CDS |
| TTCCAACAAAACATTGGTAT+TGG | 0.316636 | 1_3:+44141579 | Msa0119830:CDS |
| ACTCTTGAAGGTGTAGTTAA+AGG | 0.320099 | 1_3:+44141694 | Msa0119830:CDS |
| CACTAGAAGTGGTTGAATTA+GGG | 0.325126 | 1_3:-44143632 | None:intergenic |
| TCACTTTGTGACACATTGTT+AGG | 0.329817 | 1_3:-44143552 | None:intergenic |
| AAAACTGTACTTGCAATTTC+CGG | 0.330996 | 1_3:-44143765 | None:intergenic |
| AGAAAGAGTATTGTTATTGT+TGG | 0.333319 | 1_3:+44141658 | Msa0119830:CDS |
| ATTGGTATTGGATCCAATTA+GGG | 0.341559 | 1_3:+44141591 | Msa0119830:CDS |
| TTCTAGTGACCTTGTGGAAA+TGG | 0.351100 | 1_3:+44143647 | Msa0119830:CDS |
| GATGTTGATGAGTCTCTTAA+AGG | 0.353101 | 1_3:+44141742 | Msa0119830:CDS |
| TTTCACAAATTGGTTTCAAA+AGG | 0.364259 | 1_3:+44144120 | Msa0119830:CDS |
| TGATATTAATGTTGCTACTT+TGG | 0.366558 | 1_3:+44144289 | Msa0119830:CDS |
| AGTAGGGTTATGAGAGAAGC+AGG | 0.368227 | 1_3:+44141430 | Msa0119830:CDS |
| TATTGAGAAAGGAAAAGTTT+TGG | 0.368780 | 1_3:+44144145 | Msa0119830:CDS |
| GTAATGGAAAAGTTTGATAA+AGG | 0.370950 | 1_3:+44141718 | Msa0119830:CDS |
| TATTGAAATGAAATTATTGT+AGG | 0.371269 | 1_3:-44143931 | None:intergenic |
| CATGGCCACGACGCTTTGCT+AGG | 0.373812 | 1_3:-44141051 | None:intergenic |
| CAATGTCAAGTAATCCTCAT+AGG | 0.380093 | 1_3:+44144060 | Msa0119830:CDS |
| ATATCAACTATCTTTGTTCC+AGG | 0.387365 | 1_3:+44144610 | Msa0119830:three_prime_UTR |
| TAGAGGCTATTATTGTCCTT+TGG | 0.388662 | 1_3:+44141942 | Msa0119830:CDS |
| TAGATGATCCTAGTGTTAGT+AGG | 0.388998 | 1_3:+44141413 | Msa0119830:CDS |
| ACTAAAGCATTTGAGATAGA+AGG | 0.391727 | 1_3:-44141280 | None:intergenic |
| CGTTTGCAGCTTCTGTGGTT+AGG | 0.405394 | 1_3:-44141009 | None:intergenic |
| AGAGAAAATAGCAAAAGAAT+TGG | 0.406429 | 1_3:+44143890 | Msa0119830:CDS |
| GGAAAATTGGTTAATGGTGT+TGG | 0.413845 | 1_3:+44141985 | Msa0119830:CDS |
| ATCACGTCTTTGCATTTCAT+AGG | 0.424565 | 1_3:+44144530 | Msa0119830:three_prime_UTR |
| GATCACATGATAATGGAGAT+TGG | 0.425283 | 1_3:+44141964 | Msa0119830:CDS |
| ATGTTGATGAGTCTCTTAAA+GGG | 0.427476 | 1_3:+44141743 | Msa0119830:CDS |
| GTGGTTGAATTAGGGTTTGA+AGG | 0.434841 | 1_3:-44143624 | None:intergenic |
| CTTCCAGCAGGTATAGTGAT+AGG | 0.437040 | 1_3:-44142108 | None:intergenic |
| AAGAAACAAGGGATGATTAG+AGG | 0.439979 | 1_3:+44141925 | Msa0119830:CDS |
| TCACCTTCTTCATCTACATC+AGG | 0.443123 | 1_3:+44143504 | Msa0119830:CDS |
| AGGATATTGTTGATGCTCAT+AGG | 0.444043 | 1_3:-44143532 | None:intergenic |
| GACTTTCCACTCATAGAAGA+AGG | 0.446298 | 1_3:-44141508 | None:intergenic |
| TTACGATGAGGATGATAGAT+TGG | 0.450964 | 1_3:+44144364 | Msa0119830:CDS |
| TTCAAAAGGGCTATTGAGAA+AGG | 0.457640 | 1_3:+44144134 | Msa0119830:CDS |
| TACATAATAATAAAATTAAG+AGG | 0.459644 | 1_3:-44144566 | None:intergenic |
| AGAAACCAAGCTAGAAAAGA+AGG | 0.463259 | 1_3:-44144488 | None:intergenic |
| GTAACTACATGTATATTAGA+AGG | 0.464949 | 1_3:+44144586 | Msa0119830:three_prime_UTR |
| AGGAATCACTTACAATGATC+AGG | 0.467541 | 1_3:+44143078 | Msa0119830:CDS |
| GTTAATGGTGTTGGAGAATG+TGG | 0.469914 | 1_3:+44141994 | Msa0119830:CDS |
| GAGAACTCTATGCAATGCTT+TGG | 0.472390 | 1_3:+44143710 | Msa0119830:CDS |
| TTCACAAATTGGTTTCAAAA+GGG | 0.476637 | 1_3:+44144121 | Msa0119830:CDS |
| GATTCAAATGGTGAAGAGGT+TGG | 0.485511 | 1_3:+44144167 | Msa0119830:CDS |
| TCTTTCAAGGGTAGAAATTG+AGG | 0.485734 | 1_3:+44141804 | Msa0119830:CDS |
| GAAGAGAATCTTTCTGTCTA+CGG | 0.488889 | 1_3:-44144411 | None:intergenic |
| GAATGTGTAGCTACTCTTGA+AGG | 0.491325 | 1_3:+44141682 | Msa0119830:CDS |
| GTTTGAAGGTTCATTTGACT+TGG | 0.491779 | 1_3:-44143610 | None:intergenic |
| AACTTGTAATAGCCCTATGT+TGG | 0.491983 | 1_3:+44141225 | Msa0119830:CDS |
| AGATGATCCTAGTGTTAGTA+GGG | 0.492101 | 1_3:+44141414 | Msa0119830:CDS |
| AATATCCTAAAGATGAGAAC+GGG | 0.496661 | 1_3:+44140965 | Msa0119830:exon |
| ATAGATTGGTGGATGAAATT+GGG | 0.497982 | 1_3:+44144378 | Msa0119830:CDS |
| GAAAATCCTTCTTCTATGAG+TGG | 0.499993 | 1_3:+44141502 | Msa0119830:CDS |
| ACTTGTAATAGCCCTATGTT+GGG | 0.502989 | 1_3:+44141226 | Msa0119830:CDS |
| AGAAACAGCTTGTTCAACAT+TGG | 0.507972 | 1_3:-44141476 | None:intergenic |
| TTTGCAATGCCGATCCGGAT+TGG | 0.508837 | 1_3:+44143785 | Msa0119830:CDS |
| TTGTATTGTTGTAGCCATGC+AGG | 0.511455 | 1_3:-44143043 | None:intergenic |
| AGCTGTTCTTAATAATCCAT+TGG | 0.512465 | 1_3:-44141119 | None:intergenic |
| CTCAATCTCAAGCTTCCAGC+AGG | 0.514563 | 1_3:-44142120 | None:intergenic |
| TTTGAATATTTCTATTGATG+AGG | 0.522031 | 1_3:+44144340 | Msa0119830:CDS |
| AGCTTGAGCGCGCTTAAAAG+CGG | 0.524398 | 1_3:-44141305 | None:intergenic |
| TGGTTATTGCATGAAGGTGT+AGG | 0.525184 | 1_3:+44142956 | Msa0119830:CDS |
| TATCCTATCACTATACCTGC+TGG | 0.527341 | 1_3:+44142105 | Msa0119830:CDS |
| CTCTCATCCTCTTCAATGCA+AGG | 0.527646 | 1_3:+44141156 | Msa0119830:CDS |
| AGGTGTAGTTAAAGGAGTAA+TGG | 0.536255 | 1_3:+44141702 | Msa0119830:CDS |
| TAGCTTCCAAATCAACACCT+TGG | 0.539539 | 1_3:-44143866 | None:intergenic |
| TTCCACAAGGTCACTAGAAG+TGG | 0.540455 | 1_3:-44143643 | None:intergenic |
| GTAGGGTTATGAGAGAAGCA+GGG | 0.541087 | 1_3:+44141431 | Msa0119830:CDS |
| TTTGATTATAAGAAGAAACA+AGG | 0.542023 | 1_3:+44141913 | Msa0119830:CDS |
| TTTGGATTCAAATGGTGAAG+AGG | 0.542273 | 1_3:+44144163 | Msa0119830:CDS |
| TTCTATGAGTGGAAAGTCAA+AGG | 0.546131 | 1_3:+44141513 | Msa0119830:CDS |
| AAACCTGATGTAGATGAAGA+AGG | 0.555376 | 1_3:-44143507 | None:intergenic |
| TATTACGTTTGCAGCTTCTG+TGG | 0.557509 | 1_3:-44141014 | None:intergenic |
| GAATGATGAGAACCCAACAT+AGG | 0.558077 | 1_3:-44141238 | None:intergenic |
| AATGATGAGAACCCAACATA+GGG | 0.558354 | 1_3:-44141237 | None:intergenic |
| ATGGTGTTGGAGAATGTGGA+AGG | 0.560632 | 1_3:+44141998 | Msa0119830:CDS |
| GATAGTTTCCAACAAAACAT+TGG | 0.564471 | 1_3:+44141573 | Msa0119830:CDS |
| TCCATTATCATGTGATCCAA+AGG | 0.564507 | 1_3:-44141958 | None:intergenic |
| TTCCAAATAGTCTCAAGTGA+TGG | 0.566508 | 1_3:-44142078 | None:intergenic |
| TCTAAAGCCTTGCATTGAAG+AGG | 0.572903 | 1_3:-44141163 | None:intergenic |
| AACCACTTCTAGTGACCTTG+TGG | 0.573592 | 1_3:+44143641 | Msa0119830:CDS |
| CTCATAACCCTACTAACACT+AGG | 0.579503 | 1_3:-44141421 | None:intergenic |
| GATTGAGTCTCATCACTGAC+AGG | 0.581797 | 1_3:+44142136 | Msa0119830:CDS |
| AATGTCAAGTAATCCTCATA+GGG | 0.585696 | 1_3:+44144061 | Msa0119830:CDS |
| CGATGAGGATGATAGATTGG+TGG | 0.588947 | 1_3:+44144367 | Msa0119830:CDS |
| GGTTACATGAGATGTAAAAG+TGG | 0.589181 | 1_3:+44142051 | Msa0119830:CDS |
| TTGATTATAAGAAGAAACAA+GGG | 0.590629 | 1_3:+44141914 | Msa0119830:CDS |
| ATGGCCACGACGCTTTGCTA+GGG | 0.591505 | 1_3:-44141050 | None:intergenic |
| TAATATCCTAAAGATGAGAA+CGG | 0.592018 | 1_3:+44140964 | Msa0119830:exon |
| TCAATCTTCACCGTCAAAAG+CGG | 0.599780 | 1_3:-44141364 | None:intergenic |
| GGAAACTGTTCTTTGCAACA+AGG | 0.603124 | 1_3:+44140986 | Msa0119830:CDS |
| ACAAGCTGGTTATTGCATGA+AGG | 0.606801 | 1_3:+44142950 | Msa0119830:CDS |
| GGGCTATTACAAGTTGTCGC+TGG | 0.611230 | 1_3:-44141217 | None:intergenic |
| CAAGTTCAAGTCTTCCTGCA+TGG | 0.612792 | 1_3:+44143029 | Msa0119830:CDS |
| ACTATGCTTAGTGTTACCAA+TGG | 0.614381 | 1_3:+44141103 | Msa0119830:CDS |
| TGTTGATGAGTCTCTTAAAG+GGG | 0.619926 | 1_3:+44141744 | Msa0119830:CDS |
| ATAGTGTTTGCAACATGAAG+TGG | 0.629684 | 1_3:-44141085 | None:intergenic |
| AACAAGAGCTGATTCAAGTG+AGG | 0.637616 | 1_3:+44143974 | Msa0119830:CDS |
| TATTGATGAGGATTACGATG+AGG | 0.637911 | 1_3:+44144352 | Msa0119830:CDS |
| AAGCTGAGAATAGAACAAGC+TGG | 0.648021 | 1_3:+44142936 | Msa0119830:CDS |
| ATGAGGCTAAAGAAGAAACA+TGG | 0.653327 | 1_3:+44143835 | Msa0119830:CDS |
| GAAGTGGTGTTACTTGAGCA+TGG | 0.682174 | 1_3:-44141069 | None:intergenic |
| TTAGTTGCTCCATTTCCACA+AGG | 0.684224 | 1_3:-44143656 | None:intergenic |
| GCTCAAGCTCATCAACGTCG+TGG | 0.714287 | 1_3:+44141319 | Msa0119830:CDS |
| ATAACCCTAGCAAAGCGTCG+TGG | 0.740781 | 1_3:+44141046 | Msa0119830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTGACATATATAAT+TGG | + | chr1_3:44142668-44142687 | Msa0119830:intron | 10.0% |
| !!! | ATTTGCTATATATTTATTTT+AGG | - | chr1_3:44142855-44142874 | None:intergenic | 10.0% |
| !!! | AATATATATTTTAATTTGTG+GGG | - | chr1_3:44143158-44143177 | None:intergenic | 10.0% |
| !! | AGTTTCAATAATAATATTAT+TGG | - | chr1_3:44143271-44143290 | None:intergenic | 10.0% |
| !! | TACATAATAATAAAATTAAG+AGG | - | chr1_3:44144569-44144588 | None:intergenic | 10.0% |
| !! | AATAATTATCTATCATGAAA+TGG | + | chr1_3:44142257-44142276 | Msa0119830:intron | 15.0% |
| !! | AAAAAAAAAAAGAACTAACT+AGG | + | chr1_3:44142560-44142579 | Msa0119830:intron | 15.0% |
| !! | CAATACAAAAATGAAAATAA+AGG | + | chr1_3:44143058-44143077 | Msa0119830:CDS | 15.0% |
| !! | TATTGAAATGAAATTATTGT+AGG | - | chr1_3:44143934-44143953 | None:intergenic | 15.0% |
| !!! | AAAAAGAGTTTTAATGGAAA+AGG | + | chr1_3:44141856-44141875 | Msa0119830:CDS | 20.0% |
| !!! | AAAAGAGTTTTAATGGAAAA+GGG | + | chr1_3:44141857-44141876 | Msa0119830:CDS | 20.0% |
| !! | TTTGATTATAAGAAGAAACA+AGG | + | chr1_3:44141913-44141932 | Msa0119830:CDS | 20.0% |
| !! | TTGATTATAAGAAGAAACAA+GGG | + | chr1_3:44141914-44141933 | Msa0119830:CDS | 20.0% |
| !! | GATAATTATTCATGAAAAGA+AGG | - | chr1_3:44142247-44142266 | None:intergenic | 20.0% |
| !!! | TAATGCATATTTTCCTTATT+TGG | - | chr1_3:44142371-44142390 | None:intergenic | 20.0% |
| !!! | TTTTAAGAAGTCTTATAGAT+AGG | + | chr1_3:44143233-44143252 | Msa0119830:intron | 20.0% |
| !!! | ATTTTATCATCACAATGATA+GGG | - | chr1_3:44143465-44143484 | None:intergenic | 20.0% |
| !!! | AATTTTATCATCACAATGAT+AGG | - | chr1_3:44143466-44143485 | None:intergenic | 20.0% |
| !! | TGTACTTATATTGAAAGATT+TGG | + | chr1_3:44144032-44144051 | Msa0119830:CDS | 20.0% |
| !!! | GTTGATTATTTTTCACAAAT+TGG | + | chr1_3:44144110-44144129 | Msa0119830:CDS | 20.0% |
| !!! | TTTGAATATTTCTATTGATG+AGG | + | chr1_3:44144340-44144359 | Msa0119830:CDS | 20.0% |
| ! | GGATATTATGTACTTCTTTA+AGG | - | chr1_3:44140952-44140971 | None:intergenic | 25.0% |
| ! | TAATATCCTAAAGATGAGAA+CGG | + | chr1_3:44140964-44140983 | Msa0119830:exon | 25.0% |
| !!! | AGAAAGAGTATTGTTATTGT+TGG | + | chr1_3:44141658-44141677 | Msa0119830:CDS | 25.0% |
| !! | GTAATGGAAAAGTTTGATAA+AGG | + | chr1_3:44141718-44141737 | Msa0119830:CDS | 25.0% |
| !!! | TGATTTTGGTAATCTTTCAA+GGG | + | chr1_3:44141792-44141811 | Msa0119830:CDS | 25.0% |
| ! | GAAAAAGTTGAAGAGATTAA+GGG | + | chr1_3:44141826-44141845 | Msa0119830:CDS | 25.0% |
| !!! | CTTGCAAAAAAGAGTTTTAA+TGG | + | chr1_3:44141850-44141869 | Msa0119830:CDS | 25.0% |
| ! | GGTAAAATTAACATGAAGTT+TGG | + | chr1_3:44142157-44142176 | Msa0119830:intron | 25.0% |
| !!! | TTAGCTTTTAACCTAGTAAA+AGG | - | chr1_3:44142319-44142338 | None:intergenic | 25.0% |
| !!! | TTTTTAACTCTTTCCTAGTT+AGG | - | chr1_3:44142540-44142559 | None:intergenic | 25.0% |
| ! | ATTACTATCACCACATATAA+TGG | - | chr1_3:44142813-44142832 | None:intergenic | 25.0% |
| ! | GGTGATAGTAATATTTGAAA+TGG | + | chr1_3:44142821-44142840 | Msa0119830:intron | 25.0% |
| !! | TTTTAACAGAATGTACAAGT+AGG | + | chr1_3:44143390-44143409 | Msa0119830:intron | 25.0% |
| ! | ATGGCAAAAAGATATAATAC+CGG | + | chr1_3:44143746-44143765 | Msa0119830:CDS | 25.0% |
| ! | AGAGAAAATAGCAAAAGAAT+TGG | + | chr1_3:44143890-44143909 | Msa0119830:CDS | 25.0% |
| !! | TTTCACAAATTGGTTTCAAA+AGG | + | chr1_3:44144120-44144139 | Msa0119830:CDS | 25.0% |
| !! | TTCACAAATTGGTTTCAAAA+GGG | + | chr1_3:44144121-44144140 | Msa0119830:CDS | 25.0% |
| !! | TATTGAGAAAGGAAAAGTTT+TGG | + | chr1_3:44144145-44144164 | Msa0119830:CDS | 25.0% |
| !! | TGATATTAATGTTGCTACTT+TGG | + | chr1_3:44144289-44144308 | Msa0119830:CDS | 25.0% |
| ! | AAAGATTCTCTTCAAATTTC+AGG | + | chr1_3:44144421-44144440 | Msa0119830:CDS | 25.0% |
| ! | GTAACTACATGTATATTAGA+AGG | + | chr1_3:44144586-44144605 | Msa0119830:three_prime_UTR | 25.0% |
| AATATCCTAAAGATGAGAAC+GGG | + | chr1_3:44140965-44140984 | Msa0119830:exon | 30.0% | |
| AGCTGTTCTTAATAATCCAT+TGG | - | chr1_3:44141122-44141141 | None:intergenic | 30.0% | |
| ! | ACTAAAGCATTTGAGATAGA+AGG | - | chr1_3:44141283-44141302 | None:intergenic | 30.0% |
| GATAGTTTCCAACAAAACAT+TGG | + | chr1_3:44141573-44141592 | Msa0119830:CDS | 30.0% | |
| TTCCAACAAAACATTGGTAT+TGG | + | chr1_3:44141579-44141598 | Msa0119830:CDS | 30.0% | |
| ! | ATCCAATACCAATGTTTTGT+TGG | - | chr1_3:44141584-44141603 | None:intergenic | 30.0% |
| ! | ATTGGTATTGGATCCAATTA+GGG | + | chr1_3:44141591-44141610 | Msa0119830:CDS | 30.0% |
| TTGATATCATCAACCCTAAT+TGG | - | chr1_3:44141607-44141626 | None:intergenic | 30.0% | |
| ! | ATGTTGATGAGTCTCTTAAA+GGG | + | chr1_3:44141743-44141762 | Msa0119830:CDS | 30.0% |
| ! | TCTCTTTCTCTTTCTGATTT+TGG | + | chr1_3:44141778-44141797 | Msa0119830:CDS | 30.0% |
| !! | CTGATTTTGGTAATCTTTCA+AGG | + | chr1_3:44141791-44141810 | Msa0119830:CDS | 30.0% |
| GGAAAAAGTTGAAGAGATTA+AGG | + | chr1_3:44141825-44141844 | Msa0119830:CDS | 30.0% | |
| !! | AAAGGGTATGTTTTGTATCT+TGG | + | chr1_3:44141874-44141893 | Msa0119830:CDS | 30.0% |
| TGTATCTTGGAGATCTAAAA+TGG | + | chr1_3:44141887-44141906 | Msa0119830:CDS | 30.0% | |
| !! | GATAATGGAGATTGGAAAAT+TGG | + | chr1_3:44141972-44141991 | Msa0119830:CDS | 30.0% |
| GAGATTGGAAAATTGGTTAA+TGG | + | chr1_3:44141979-44141998 | Msa0119830:CDS | 30.0% | |
| !!! | ATGTGTATTGCTACTTTTCA+AGG | + | chr1_3:44142030-44142049 | Msa0119830:CDS | 30.0% |
| ATCTATCATGAAATGGACAT+TGG | + | chr1_3:44142264-44142283 | Msa0119830:intron | 30.0% | |
| ATGAAATGGACATTGGAAAA+GGG | + | chr1_3:44142271-44142290 | Msa0119830:intron | 30.0% | |
| ! | AGTTGTCTTTTCCTTTTACT+AGG | + | chr1_3:44142305-44142324 | Msa0119830:intron | 30.0% |
| !! | CATATTTTCCTTATTTGGCT+TGG | - | chr1_3:44142366-44142385 | None:intergenic | 30.0% |
| AACCACTTGAGAAACAAATA+GGG | - | chr1_3:44142408-44142427 | None:intergenic | 30.0% | |
| TAACCACTTGAGAAACAAAT+AGG | - | chr1_3:44142409-44142428 | None:intergenic | 30.0% | |
| TTTCTCAAGTGGTTATTGTA+AGG | + | chr1_3:44142414-44142433 | Msa0119830:intron | 30.0% | |
| GGTTATTGTAAGGTAGAAAA+TGG | + | chr1_3:44142424-44142443 | Msa0119830:intron | 30.0% | |
| AACCAAAAAAAGACCTAACT+AGG | + | chr1_3:44142524-44142543 | Msa0119830:intron | 30.0% | |
| !!! | TTCCTAGTTAGGTCTTTTTT+TGG | - | chr1_3:44142529-44142548 | None:intergenic | 30.0% |
| !! | AGCTGTTTTACCATTATATG+TGG | + | chr1_3:44142800-44142819 | Msa0119830:intron | 30.0% |
| !!! | ATATTTTAATTTGTGGGGCA+TGG | - | chr1_3:44143153-44143172 | None:intergenic | 30.0% |
| ! | GGTATTATATCTTTTTGCCA+TGG | - | chr1_3:44143747-44143766 | None:intergenic | 30.0% |
| AAAACTGTACTTGCAATTTC+CGG | - | chr1_3:44143768-44143787 | None:intergenic | 30.0% | |
| !! | AATTGGCTAGACTTGTTTTT+GGG | + | chr1_3:44143907-44143926 | Msa0119830:CDS | 30.0% |
| AATGTCAAGTAATCCTCATA+GGG | + | chr1_3:44144061-44144080 | Msa0119830:CDS | 30.0% | |
| !!! | GGAAAAGTTTTGGATTCAAA+TGG | + | chr1_3:44144155-44144174 | Msa0119830:CDS | 30.0% |
| !! | TCTTGAGATGATCTTTGTTT+TGG | - | chr1_3:44144257-44144276 | None:intergenic | 30.0% |
| GACAAGTTCTTATGTTTCTT+TGG | + | chr1_3:44144316-44144335 | Msa0119830:CDS | 30.0% | |
| ! | ATAGATTGGTGGATGAAATT+GGG | + | chr1_3:44144378-44144397 | Msa0119830:CDS | 30.0% |
| !!! | TTTTTCCTTCTTTTCTAGCT+TGG | + | chr1_3:44144483-44144502 | Msa0119830:three_prime_UTR | 30.0% |
| ATAGTGTTTGCAACATGAAG+TGG | - | chr1_3:44141088-44141107 | None:intergenic | 35.0% | |
| ACTATGCTTAGTGTTACCAA+TGG | + | chr1_3:44141103-44141122 | Msa0119830:CDS | 35.0% | |
| AACTTGTAATAGCCCTATGT+TGG | + | chr1_3:44141225-44141244 | Msa0119830:CDS | 35.0% | |
| ACTTGTAATAGCCCTATGTT+GGG | + | chr1_3:44141226-44141245 | Msa0119830:CDS | 35.0% | |
| AATGATGAGAACCCAACATA+GGG | - | chr1_3:44141240-44141259 | None:intergenic | 35.0% | |
| TAGATGATCCTAGTGTTAGT+AGG | + | chr1_3:44141413-44141432 | Msa0119830:CDS | 35.0% | |
| AGATGATCCTAGTGTTAGTA+GGG | + | chr1_3:44141414-44141433 | Msa0119830:CDS | 35.0% | |
| ! | AGAAACAGCTTGTTCAACAT+TGG | - | chr1_3:44141479-44141498 | None:intergenic | 35.0% |
| !! | TGTTGAACAAGCTGTTTCTT+TGG | + | chr1_3:44141480-44141499 | Msa0119830:CDS | 35.0% |
| GAAAATCCTTCTTCTATGAG+TGG | + | chr1_3:44141502-44141521 | Msa0119830:CDS | 35.0% | |
| TTCTATGAGTGGAAAGTCAA+AGG | + | chr1_3:44141513-44141532 | Msa0119830:CDS | 35.0% | |
| ! | CATTGGTATTGGATCCAATT+AGG | + | chr1_3:44141590-44141609 | Msa0119830:CDS | 35.0% |
| ! | ACTCTTGAAGGTGTAGTTAA+AGG | + | chr1_3:44141694-44141713 | Msa0119830:CDS | 35.0% |
| AGGTGTAGTTAAAGGAGTAA+TGG | + | chr1_3:44141702-44141721 | Msa0119830:CDS | 35.0% | |
| ! | GATGTTGATGAGTCTCTTAA+AGG | + | chr1_3:44141742-44141761 | Msa0119830:CDS | 35.0% |
| ! | TGTTGATGAGTCTCTTAAAG+GGG | + | chr1_3:44141744-44141763 | Msa0119830:CDS | 35.0% |
| TCTTTCAAGGGTAGAAATTG+AGG | + | chr1_3:44141804-44141823 | Msa0119830:CDS | 35.0% | |
| AAGAAACAAGGGATGATTAG+AGG | + | chr1_3:44141925-44141944 | Msa0119830:CDS | 35.0% | |
| TAGAGGCTATTATTGTCCTT+TGG | + | chr1_3:44141942-44141961 | Msa0119830:CDS | 35.0% | |
| TCCTTTGGATCACATGATAA+TGG | + | chr1_3:44141957-44141976 | Msa0119830:CDS | 35.0% | |
| TCCATTATCATGTGATCCAA+AGG | - | chr1_3:44141961-44141980 | None:intergenic | 35.0% | |
| !! | GATCACATGATAATGGAGAT+TGG | + | chr1_3:44141964-44141983 | Msa0119830:CDS | 35.0% |
| GGAAAATTGGTTAATGGTGT+TGG | + | chr1_3:44141985-44142004 | Msa0119830:CDS | 35.0% | |
| GGTTACATGAGATGTAAAAG+TGG | + | chr1_3:44142051-44142070 | Msa0119830:CDS | 35.0% | |
| ATCCATCACTTGAGACTATT+TGG | + | chr1_3:44142076-44142095 | Msa0119830:CDS | 35.0% | |
| TTCCAAATAGTCTCAAGTGA+TGG | - | chr1_3:44142081-44142100 | None:intergenic | 35.0% | |
| ACAGTTACAAGTTACAGTGA+AGG | - | chr1_3:44142196-44142215 | None:intergenic | 35.0% | |
| ! | TGTAACTTGTAACTGTGCTT+TGG | + | chr1_3:44142200-44142219 | Msa0119830:intron | 35.0% |
| CATGAAATGGACATTGGAAA+AGG | + | chr1_3:44142270-44142289 | Msa0119830:intron | 35.0% | |
| CATTTAAGCCAAGCCAAATA+AGG | + | chr1_3:44142355-44142374 | Msa0119830:intron | 35.0% | |
| ! | TTCCCTATTTGTTTCTCAAG+TGG | + | chr1_3:44142403-44142422 | Msa0119830:intron | 35.0% |
| TGAAGAGCAAAAAGAGGAAA+TGG | - | chr1_3:44142886-44142905 | None:intergenic | 35.0% | |
| AGGAATCACTTACAATGATC+AGG | + | chr1_3:44143078-44143097 | Msa0119830:CDS | 35.0% | |
| GGGGCATGGTAAAAAATAAT+AGG | - | chr1_3:44143139-44143158 | None:intergenic | 35.0% | |
| AAAAAGTGGAACTCTATGTG+TGG | + | chr1_3:44143423-44143442 | Msa0119830:CDS | 35.0% | |
| !! | CACAATGATAGGGTTGTTTT+TGG | - | chr1_3:44143455-44143474 | None:intergenic | 35.0% |
| AAACCTGATGTAGATGAAGA+AGG | - | chr1_3:44143510-44143529 | None:intergenic | 35.0% | |
| AGGATATTGTTGATGCTCAT+AGG | - | chr1_3:44143535-44143554 | None:intergenic | 35.0% | |
| TCACTTTGTGACACATTGTT+AGG | - | chr1_3:44143555-44143574 | None:intergenic | 35.0% | |
| ! | CACTTTGAGAGAACCAAAAA+TGG | - | chr1_3:44143587-44143606 | None:intergenic | 35.0% |
| !!! | CATTTTTGGTTCTCTCAAAG+TGG | + | chr1_3:44143585-44143604 | Msa0119830:CDS | 35.0% |
| GTTTGAAGGTTCATTTGACT+TGG | - | chr1_3:44143613-44143632 | None:intergenic | 35.0% | |
| CACTAGAAGTGGTTGAATTA+GGG | - | chr1_3:44143635-44143654 | None:intergenic | 35.0% | |
| TCACTAGAAGTGGTTGAATT+AGG | - | chr1_3:44143636-44143655 | None:intergenic | 35.0% | |
| !! | ATGCAATGCTTTGGAGAAAA+AGG | + | chr1_3:44143719-44143738 | Msa0119830:CDS | 35.0% |
| ! | TTCTTTTTACCAATCCGGAT+CGG | - | chr1_3:44143797-44143816 | None:intergenic | 35.0% |
| !! | TCCGGATTGGTAAAAAGAAA+AGG | + | chr1_3:44143798-44143817 | Msa0119830:CDS | 35.0% |
| ! | CCCTTTTCTTTTTACCAATC+CGG | - | chr1_3:44143802-44143821 | None:intergenic | 35.0% |
| !! | CCGGATTGGTAAAAAGAAAA+GGG | + | chr1_3:44143799-44143818 | Msa0119830:CDS | 35.0% |
| AGGGAAAAACAATGATCATG+AGG | + | chr1_3:44143818-44143837 | Msa0119830:CDS | 35.0% | |
| ATGAGGCTAAAGAAGAAACA+TGG | + | chr1_3:44143835-44143854 | Msa0119830:CDS | 35.0% | |
| !!! | GAAACATGGTTGTTTTTCCA+AGG | + | chr1_3:44143849-44143868 | Msa0119830:CDS | 35.0% |
| !!! | GTTTTTCCAAGGTGTTGATT+TGG | + | chr1_3:44143860-44143879 | Msa0119830:CDS | 35.0% |
| !! | GAATTGGCTAGACTTGTTTT+TGG | + | chr1_3:44143906-44143925 | Msa0119830:CDS | 35.0% |
| CAATGTCAAGTAATCCTCAT+AGG | + | chr1_3:44144060-44144079 | Msa0119830:CDS | 35.0% | |
| TCAACAAGAAAAACCCTATG+AGG | - | chr1_3:44144077-44144096 | None:intergenic | 35.0% | |
| TTCAAAAGGGCTATTGAGAA+AGG | + | chr1_3:44144134-44144153 | Msa0119830:CDS | 35.0% | |
| TTTGGATTCAAATGGTGAAG+AGG | + | chr1_3:44144163-44144182 | Msa0119830:CDS | 35.0% | |
| TATTGATGAGGATTACGATG+AGG | + | chr1_3:44144352-44144371 | Msa0119830:CDS | 35.0% | |
| TTACGATGAGGATGATAGAT+TGG | + | chr1_3:44144364-44144383 | Msa0119830:CDS | 35.0% | |
| ! | GATAGATTGGTGGATGAAAT+TGG | + | chr1_3:44144377-44144396 | Msa0119830:CDS | 35.0% |
| GAAGAGAATCTTTCTGTCTA+CGG | - | chr1_3:44144414-44144433 | None:intergenic | 35.0% | |
| AGAAACCAAGCTAGAAAAGA+AGG | - | chr1_3:44144491-44144510 | None:intergenic | 35.0% | |
| ATCACGTCTTTGCATTTCAT+AGG | + | chr1_3:44144530-44144549 | Msa0119830:three_prime_UTR | 35.0% | |
| AGTTTCCCGTTCTCATCTTT+AGG | - | chr1_3:44140973-44140992 | None:intergenic | 40.0% | |
| GGAAACTGTTCTTTGCAACA+AGG | + | chr1_3:44140986-44141005 | Msa0119830:CDS | 40.0% | |
| TATTACGTTTGCAGCTTCTG+TGG | - | chr1_3:44141017-44141036 | None:intergenic | 40.0% | |
| ! | TCTAAAGCCTTGCATTGAAG+AGG | - | chr1_3:44141166-44141185 | None:intergenic | 40.0% |
| GAATGATGAGAACCCAACAT+AGG | - | chr1_3:44141241-44141260 | None:intergenic | 40.0% | |
| !! | TCAACAACAACCGCTTTTGA+CGG | + | chr1_3:44141354-44141373 | Msa0119830:CDS | 40.0% |
| TCAATCTTCACCGTCAAAAG+CGG | - | chr1_3:44141367-44141386 | None:intergenic | 40.0% | |
| CTCATAACCCTACTAACACT+AGG | - | chr1_3:44141424-44141443 | None:intergenic | 40.0% | |
| GACTTTCCACTCATAGAAGA+AGG | - | chr1_3:44141511-44141530 | None:intergenic | 40.0% | |
| GAATGTGTAGCTACTCTTGA+AGG | + | chr1_3:44141682-44141701 | Msa0119830:CDS | 40.0% | |
| ! | GTTAATGGTGTTGGAGAATG+TGG | + | chr1_3:44141994-44142013 | Msa0119830:CDS | 40.0% |
| ! | TTGGAGAATGTGGAAGGTTT+TGG | + | chr1_3:44142004-44142023 | Msa0119830:CDS | 40.0% |
| TATCCTATCACTATACCTGC+TGG | + | chr1_3:44142105-44142124 | Msa0119830:CDS | 40.0% | |
| ! | TTCCTCTTTTTGCTCTTCAG+TGG | + | chr1_3:44142887-44142906 | Msa0119830:intron | 40.0% |
| AACCACTGAAGAGCAAAAAG+AGG | - | chr1_3:44142892-44142911 | None:intergenic | 40.0% | |
| AAGCTGAGAATAGAACAAGC+TGG | + | chr1_3:44142936-44142955 | Msa0119830:CDS | 40.0% | |
| ACAAGCTGGTTATTGCATGA+AGG | + | chr1_3:44142950-44142969 | Msa0119830:CDS | 40.0% | |
| ! | TGGTTATTGCATGAAGGTGT+AGG | + | chr1_3:44142956-44142975 | Msa0119830:CDS | 40.0% |
| TTGTATTGTTGTAGCCATGC+AGG | - | chr1_3:44143046-44143065 | None:intergenic | 40.0% | |
| TAGGAGAGCTTTGCAAAAAG+TGG | + | chr1_3:44143409-44143428 | Msa0119830:CDS | 40.0% | |
| TCACCTTCTTCATCTACATC+AGG | + | chr1_3:44143504-44143523 | Msa0119830:CDS | 40.0% | |
| GTGGTTGAATTAGGGTTTGA+AGG | - | chr1_3:44143627-44143646 | None:intergenic | 40.0% | |
| TTCTAGTGACCTTGTGGAAA+TGG | + | chr1_3:44143647-44143666 | Msa0119830:CDS | 40.0% | |
| TTAGTTGCTCCATTTCCACA+AGG | - | chr1_3:44143659-44143678 | None:intergenic | 40.0% | |
| GAGAACTCTATGCAATGCTT+TGG | + | chr1_3:44143710-44143729 | Msa0119830:CDS | 40.0% | |
| ! | CTTTGGAGAAAAAGGTTCCA+TGG | + | chr1_3:44143727-44143746 | Msa0119830:CDS | 40.0% |
| TAGCTTCCAAATCAACACCT+TGG | - | chr1_3:44143869-44143888 | None:intergenic | 40.0% | |
| ! | AACAAGAGCTGATTCAAGTG+AGG | + | chr1_3:44143974-44143993 | Msa0119830:CDS | 40.0% |
| GATTCAAATGGTGAAGAGGT+TGG | + | chr1_3:44144167-44144186 | Msa0119830:CDS | 40.0% | |
| !! | GAAGTGGTGTTACTTGAGCA+TGG | - | chr1_3:44141072-44141091 | None:intergenic | 45.0% |
| CTCTCATCCTCTTCAATGCA+AGG | + | chr1_3:44141156-44141175 | Msa0119830:CDS | 45.0% | |
| AGTAGGGTTATGAGAGAAGC+AGG | + | chr1_3:44141430-44141449 | Msa0119830:CDS | 45.0% | |
| GTAGGGTTATGAGAGAAGCA+GGG | + | chr1_3:44141431-44141450 | Msa0119830:CDS | 45.0% | |
| ! | ATGGTGTTGGAGAATGTGGA+AGG | + | chr1_3:44141998-44142017 | Msa0119830:CDS | 45.0% |
| CTTCCAGCAGGTATAGTGAT+AGG | - | chr1_3:44142111-44142130 | None:intergenic | 45.0% | |
| GATTGAGTCTCATCACTGAC+AGG | + | chr1_3:44142136-44142155 | Msa0119830:CDS | 45.0% | |
| CAAGTTCAAGTCTTCCTGCA+TGG | + | chr1_3:44143029-44143048 | Msa0119830:CDS | 45.0% | |
| AGAACCAAAAATGGCGATCG+TGG | - | chr1_3:44143578-44143597 | None:intergenic | 45.0% | |
| AACCACTTCTAGTGACCTTG+TGG | + | chr1_3:44143641-44143660 | Msa0119830:CDS | 45.0% | |
| TTCCACAAGGTCACTAGAAG+TGG | - | chr1_3:44143646-44143665 | None:intergenic | 45.0% | |
| ! | ACAGTTTTGCAATGCCGATC+CGG | + | chr1_3:44143780-44143799 | Msa0119830:CDS | 45.0% |
| CGATGAGGATGATAGATTGG+TGG | + | chr1_3:44144367-44144386 | Msa0119830:CDS | 45.0% | |
| !!! | TAATATATATTTTAATTTGT+GGG | - | chr1_3:44143159-44143178 | None:intergenic | 5.0% |
| !!! | TTAATATATATTTTAATTTG+TGG | - | chr1_3:44143160-44143179 | None:intergenic | 5.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr1_3:44140872-44140891 | None:intergenic | 50.0% | |
| CGTTTGCAGCTTCTGTGGTT+AGG | - | chr1_3:44141012-44141031 | None:intergenic | 50.0% | |
| !! | ATAACCCTAGCAAAGCGTCG+TGG | + | chr1_3:44141046-44141065 | Msa0119830:CDS | 50.0% |
| GGGCTATTACAAGTTGTCGC+TGG | - | chr1_3:44141220-44141239 | None:intergenic | 50.0% | |
| AGCTTGAGCGCGCTTAAAAG+CGG | - | chr1_3:44141308-44141327 | None:intergenic | 50.0% | |
| CTCAATCTCAAGCTTCCAGC+AGG | - | chr1_3:44142123-44142142 | None:intergenic | 50.0% | |
| !! | GTGACCACGATCGCCATTTT+TGG | + | chr1_3:44143571-44143590 | Msa0119830:CDS | 50.0% |
| TTTGCAATGCCGATCCGGAT+TGG | + | chr1_3:44143785-44143804 | Msa0119830:CDS | 50.0% | |
| ATGGCCACGACGCTTTGCTA+GGG | - | chr1_3:44141053-44141072 | None:intergenic | 55.0% | |
| GCTCAAGCTCATCAACGTCG+TGG | + | chr1_3:44141319-44141338 | Msa0119830:CDS | 55.0% | |
| CATGGCCACGACGCTTTGCT+AGG | - | chr1_3:44141054-44141073 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 44140844 | 44144632 | 44140844 | ID=Msa0119830;Name=Msa0119830 |
| chr1_3 | mRNA | 44140844 | 44144632 | 44140844 | ID=Msa0119830-mRNA-1;Parent=Msa0119830;Name=Msa0119830-mRNA-1;_AED=0.03;_eAED=0.03;_QI=133|1|1|1|1|1|3|181|808 |
| chr1_3 | exon | 44140844 | 44142157 | 44140844 | ID=Msa0119830-mRNA-1:exon:13173;Parent=Msa0119830-mRNA-1 |
| chr1_3 | exon | 44142907 | 44143099 | 44142907 | ID=Msa0119830-mRNA-1:exon:13174;Parent=Msa0119830-mRNA-1 |
| chr1_3 | exon | 44143399 | 44144632 | 44143399 | ID=Msa0119830-mRNA-1:exon:13175;Parent=Msa0119830-mRNA-1 |
| chr1_3 | five_prime_UTR | 44140844 | 44140976 | 44140844 | ID=Msa0119830-mRNA-1:five_prime_utr;Parent=Msa0119830-mRNA-1 |
| chr1_3 | CDS | 44140977 | 44142157 | 44140977 | ID=Msa0119830-mRNA-1:cds;Parent=Msa0119830-mRNA-1 |
| chr1_3 | CDS | 44142907 | 44143099 | 44142907 | ID=Msa0119830-mRNA-1:cds;Parent=Msa0119830-mRNA-1 |
| chr1_3 | CDS | 44143399 | 44144451 | 44143399 | ID=Msa0119830-mRNA-1:cds;Parent=Msa0119830-mRNA-1 |
| chr1_3 | three_prime_UTR | 44144452 | 44144632 | 44144452 | ID=Msa0119830-mRNA-1:three_prime_utr;Parent=Msa0119830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
