AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1193170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1193170 MtrunA17_Chr8g0366281 88.000 375 21 2 1 371 1 355 0.0 608
Msa1193170 MtrunA17_Chr5g0410741 55.711 429 99 16 1 368 1 399 1.43e-119 352
Msa1193170 MtrunA17_Chr3g0109981 45.299 234 71 7 153 368 258 452 4.40e-48 169
Msa1193170 MtrunA17_Chr6g0479431 44.037 218 86 7 153 368 184 367 3.94e-40 145
Msa1193170 MtrunA17_Chr1g0154261 84.722 72 11 0 164 235 121 192 1.69e-35 131
Msa1193170 MtrunA17_Chr7g0243081 44.737 114 59 1 130 243 36 145 9.38e-24 100
Msa1193170 MtrunA17_Chr1g0162931 67.241 58 19 0 168 225 17 74 9.09e-22 94.0
Msa1193170 MtrunA17_Chr1g0210911 65.517 58 20 0 168 225 21 78 1.96e-21 94.0
Msa1193170 MtrunA17_Chr8g0379121 62.295 61 23 0 168 228 110 170 1.57e-19 89.4
Msa1193170 MtrunA17_Chr2g0320231 63.934 61 22 0 168 228 96 156 1.90e-19 89.0
Msa1193170 MtrunA17_Chr7g0261911 52.439 82 37 1 157 238 250 329 5.97e-19 88.2
Msa1193170 MtrunA17_Chr1g0190301 47.872 94 35 2 154 235 148 239 3.65e-18 85.1
Msa1193170 MtrunA17_Chr2g0288601 67.925 53 17 0 168 220 70 122 6.54e-18 79.3
Msa1193170 MtrunA17_Chr7g0258551 54.412 68 29 1 171 238 214 279 8.21e-18 84.0
Msa1193170 MtrunA17_Chr7g0274471 37.121 132 72 2 170 290 219 350 1.31e-17 84.0
Msa1193170 MtrunA17_Chr3g0095611 60.714 56 22 0 170 225 20 75 1.91e-17 80.1
Msa1193170 MtrunA17_Chr5g0409731 69.811 53 16 0 170 222 26 78 2.03e-17 81.6
Msa1193170 MtrunA17_Chr2g0291021 53.247 77 34 1 171 247 51 125 6.29e-17 80.9
Msa1193170 MtrunA17_Chr2g0283951 49.425 87 31 2 168 241 88 174 9.08e-17 80.9
Msa1193170 MtrunA17_Chr7g0254981 50.000 78 38 1 171 248 52 128 2.23e-16 78.6
Msa1193170 MtrunA17_Chr1g0175091 52.941 68 30 1 171 238 260 325 7.51e-16 78.6
Msa1193170 MtrunA17_Chr4g0042451 33.333 147 93 3 170 314 18 161 1.04e-15 77.4
Msa1193170 MtrunA17_Chr1g0197171 62.500 56 21 0 170 225 45 100 1.23e-15 76.6
Msa1193170 MtrunA17_Chr5g0417521 32.653 147 93 2 170 313 16 159 1.60e-15 77.0
Msa1193170 MtrunA17_Chr8g0356501 58.929 56 23 0 170 225 38 93 2.59e-15 76.3
Msa1193170 MtrunA17_Chr2g0310011 58.929 56 23 0 170 225 36 91 3.29e-15 75.9
Msa1193170 MtrunA17_Chr2g0290991 60.714 56 22 0 170 225 40 95 4.54e-15 75.1
Msa1193170 MtrunA17_Chr6g0461641 60.377 53 21 0 170 222 43 95 1.19e-14 74.7
Msa1193170 MtrunA17_Chr2g0321461 57.143 56 24 0 170 225 46 101 2.38e-14 73.9
Msa1193170 MtrunA17_Chr1g0175081 48.333 60 31 0 171 230 24 83 4.06e-13 65.1
Msa1193170 MtrunA17_Chr7g0242521 46.341 82 37 2 171 245 15 96 7.71e-13 67.8
Msa1193170 MtrunA17_Chr1g0175071 54.717 53 24 0 171 223 179 231 2.75e-12 67.0
Msa1193170 MtrunA17_Chr4g0045361 50.000 72 34 1 164 235 269 338 4.25e-12 67.0
Msa1193170 MtrunA17_Chr4g0062921 47.297 74 36 1 163 236 229 299 8.22e-12 66.2
Msa1193170 MtrunA17_Chr2g0304841 38.679 106 54 3 166 265 210 310 3.46e-11 64.7
Msa1193170 MtrunA17_Chr1g0198601 39.130 115 66 3 123 237 167 277 4.10e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1193170 AT1G32240.1 47.506 421 136 16 1 370 1 387 1.79e-82 256
Msa1193170 AT1G32240.2 49.701 334 114 13 1 288 1 326 5.72e-76 239
Msa1193170 AT4G17695.1 37.018 389 151 12 1 368 1 316 1.50e-53 180
Msa1193170 AT5G16560.1 40.210 286 110 8 9 243 21 296 6.01e-42 151
Msa1193170 AT5G42630.2 77.333 75 17 0 164 238 100 174 5.28e-35 128
Msa1193170 AT5G42630.1 79.452 73 15 0 164 236 100 172 1.67e-34 128
Msa1193170 AT1G32240.3 47.977 173 51 5 204 370 1 140 1.49e-29 111
Msa1193170 AT2G38300.1 40.580 138 68 4 154 288 43 169 7.10e-22 95.5
Msa1193170 AT4G04605.1 65.574 61 21 0 168 228 13 73 9.35e-22 92.8
Msa1193170 AT1G14600.1 69.492 59 18 0 169 227 23 81 4.14e-21 92.0
Msa1193170 AT2G02060.2 74.074 54 14 0 169 222 29 82 7.96e-21 91.3
Msa1193170 AT2G02060.1 74.074 54 14 0 169 222 29 82 7.96e-21 91.3
Msa1193170 AT5G45580.1 47.619 105 46 3 170 266 8 111 6.31e-20 89.0
Msa1193170 AT5G45580.2 47.619 105 46 3 170 266 24 127 9.23e-20 88.6
Msa1193170 AT4G04580.1 64.286 56 20 0 170 225 15 70 3.10e-18 81.6
Msa1193170 AT2G40260.1 62.319 69 24 2 162 230 76 142 7.84e-18 84.7
Msa1193170 AT2G42660.1 63.158 57 21 0 170 226 51 107 1.67e-17 81.6
Msa1193170 AT2G01060.1 54.545 77 32 1 171 247 17 90 3.56e-17 81.3
Msa1193170 AT4G04555.1 60.345 58 23 0 168 225 13 70 6.87e-17 76.3
Msa1193170 AT4G28610.1 60.606 66 23 2 171 235 227 290 1.52e-16 80.9
Msa1193170 AT3G12730.1 62.500 56 21 0 170 225 24 79 2.32e-16 78.2
Msa1193170 AT3G24120.2 62.264 53 20 0 170 222 42 94 1.02e-15 77.4
Msa1193170 AT3G24120.1 62.264 53 20 0 170 222 42 94 1.03e-15 77.4
Msa1193170 AT5G29000.4 52.778 72 34 0 171 242 233 304 1.29e-15 77.4
Msa1193170 AT3G04450.3 61.818 55 21 0 171 225 240 294 1.70e-15 77.0
Msa1193170 AT3G04450.4 41.748 103 46 1 171 273 200 288 2.61e-15 77.0
Msa1193170 AT3G04450.2 41.748 103 46 1 171 273 200 288 2.61e-15 77.0
Msa1193170 AT5G29000.1 63.636 55 20 0 171 225 190 244 3.05e-15 76.6
Msa1193170 AT5G29000.3 63.636 55 20 0 171 225 190 244 3.05e-15 76.6
Msa1193170 AT4G13640.2 60.377 53 21 0 170 222 38 90 3.12e-15 75.9
Msa1193170 AT4G13640.1 60.377 53 21 0 170 222 38 90 3.25e-15 75.9
Msa1193170 AT3G04450.1 41.748 103 46 1 171 273 240 328 3.29e-15 77.0
Msa1193170 AT5G29000.2 63.636 55 20 0 171 225 233 287 4.07e-15 76.6
Msa1193170 AT1G79430.2 58.929 56 23 0 170 225 35 90 4.12e-15 76.3
Msa1193170 AT5G06800.3 53.333 60 28 0 166 225 189 248 1.22e-14 73.9
Msa1193170 AT2G20400.1 46.237 93 46 2 171 261 233 323 2.15e-14 74.3
Msa1193170 AT2G20400.2 60.000 60 24 0 171 230 233 292 3.09e-14 73.9
Msa1193170 AT5G18240.2 55.357 56 25 0 170 225 46 101 3.27e-14 73.9
Msa1193170 AT5G18240.3 55.357 56 25 0 170 225 46 101 3.27e-14 73.9
Msa1193170 AT5G18240.5 55.357 56 25 0 170 225 46 101 3.68e-14 73.6
Msa1193170 AT3G04030.1 53.571 56 26 0 170 225 46 101 3.82e-14 73.6
Msa1193170 AT5G18240.1 55.357 56 25 0 170 225 46 101 3.95e-14 73.6
Msa1193170 AT5G18240.4 55.357 56 25 0 170 225 46 101 3.95e-14 73.6
Msa1193170 AT5G06800.1 53.333 60 28 0 166 225 189 248 4.46e-14 73.2
Msa1193170 AT3G04030.3 53.571 56 26 0 170 225 46 101 4.46e-14 73.6
Msa1193170 AT5G06800.2 53.333 60 28 0 166 225 189 248 4.79e-14 73.2
Msa1193170 AT3G13040.3 61.818 55 21 0 171 225 243 297 9.02e-14 72.8
Msa1193170 AT3G13040.1 61.818 55 21 0 171 225 243 297 9.02e-14 72.8
Msa1193170 AT3G13040.2 61.818 55 21 0 171 225 243 297 9.02e-14 72.8
Msa1193170 AT2G06020.1 55.932 59 26 0 171 229 88 146 1.17e-13 71.2
Msa1193170 AT1G69580.1 51.786 56 27 0 170 225 35 90 2.68e-13 70.5
Msa1193170 AT1G69580.2 51.786 56 27 0 170 225 35 90 2.74e-13 70.5
Msa1193170 AT3G04030.2 51.786 56 26 1 170 225 46 100 1.12e-11 66.2
Msa1193170 AT2G03500.1 50.000 74 32 2 165 235 229 300 1.34e-11 65.9

Find 100 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAGCTTTGGTAATTATTT+TGG 0.139612 8_1:+39402233 None:intergenic
CCTAATGTGAATTCCAAATT+TGG 0.168021 8_1:+39397096 None:intergenic
TGTTCATGCTGTTGAACTTT+TGG 0.168723 8_1:-39401972 Msa1193170:CDS
ACCCTTCTCTTTCCAATCTA+AGG 0.182763 8_1:-39402351 Msa1193170:CDS
TCACAAAGTAAGTGATATTT+TGG 0.212171 8_1:-39396704 Msa1193170:three_prime_UTR
CAAGATGAGTTGGATGATTT+AGG 0.214915 8_1:-39402424 Msa1193170:CDS
AAGCTTAAAGAATCCAAATT+TGG 0.223420 8_1:-39397109 Msa1193170:CDS
AGTTGGATGATTTAGGATTC+TGG 0.227254 8_1:-39402417 Msa1193170:CDS
AGCTCTTCCTCAAACATTTC+GGG 0.246554 8_1:-39397135 Msa1193170:CDS
CATTAGCTCAAGAACTGATT+TGG 0.260573 8_1:+39401713 None:intergenic
TCCATGTGTTTGATAGTAAC+AGG 0.289220 8_1:-39398698 Msa1193170:CDS
AAGCTCTTCCTCAAACATTT+CGG 0.296247 8_1:-39397136 Msa1193170:CDS
CCAAATTTGGAATTCACATT+AGG 0.298727 8_1:-39397096 Msa1193170:CDS
CAAAGCTTAAGTGAAGAGTT+AGG 0.304469 8_1:-39402220 Msa1193170:CDS
GTATACATGGCTTCCACTAA+TGG 0.306095 8_1:-39398732 Msa1193170:CDS
GGTACGAAAATTTACTTTCA+TGG 0.315520 8_1:+39401945 None:intergenic
AATAAAGCAATAGAAGGATT+AGG 0.317571 8_1:+39402154 None:intergenic
CTTGATGTTTGTTTGCTGTT+TGG 0.333293 8_1:+39402469 None:intergenic
CAAATCAGTTCTTGAGCTAA+TGG 0.343450 8_1:-39401712 Msa1193170:CDS
TACACTGGAATTCCTCTAAT+AGG 0.345904 8_1:+39402187 None:intergenic
ATAAAGCAATAGAAGGATTA+GGG 0.352793 8_1:+39402155 None:intergenic
ATTTCTGCATCCAACTTAAC+TGG 0.356971 8_1:+39400003 None:intergenic
ACATGTTAAATCTCATTTGC+AGG 0.365023 8_1:-39401667 Msa1193170:intron
GGTTCCTTAACCAGTGTCTC+TGG 0.373438 8_1:+39396624 None:intergenic
CTAACTCTTCACTTAAGCTT+TGG 0.376994 8_1:+39402221 None:intergenic
GGGTTTCTCAAACCTATTAG+AGG 0.377514 8_1:-39402199 Msa1193170:CDS
GCATTTGGAGCAAATCTTCC+AGG 0.379781 8_1:-39399954 Msa1193170:intron
AATCTCACAAGAGCTTAGTT+TGG 0.381835 8_1:+39396820 None:intergenic
CTTGCAAAGAGAGAAATTAA+TGG 0.387710 8_1:-39396748 Msa1193170:three_prime_UTR
TATACATGGCTTCCACTAAT+GGG 0.392718 8_1:-39398731 Msa1193170:CDS
TTGTAGAGGTTTGAAGAAGA+AGG 0.394837 8_1:+39402325 None:intergenic
GGCATAAAGCAACGAAGAAA+AGG 0.404404 8_1:-39396866 Msa1193170:three_prime_UTR
ATTAGCTCAAGAACTGATTT+GGG 0.410489 8_1:+39401714 None:intergenic
AGGATTCTGGAAAAGAGCTT+TGG 0.413378 8_1:-39402404 Msa1193170:CDS
TTTCCAACAGGATGGACCTT+TGG 0.414851 8_1:+39398654 None:intergenic
AGAAGAAGGAGCCCTTAGAT+TGG 0.419504 8_1:+39402339 None:intergenic
TTGCAAAGAGAGAAATTAAT+GGG 0.422908 8_1:-39396747 Msa1193170:three_prime_UTR
ATGAGATTTAACATGTGATA+AGG 0.424611 8_1:+39401674 None:intergenic
AAAGCTTAAGTGAAGAGTTA+GGG 0.427487 8_1:-39402219 Msa1193170:CDS
CCCTTCTCTTTCCAATCTAA+GGG 0.429581 8_1:-39402350 Msa1193170:CDS
GAGAGAATATTTCCCATTAG+TGG 0.430271 8_1:+39398719 None:intergenic
ATGTATGACAATGGTTCATC+TGG 0.431132 8_1:-39400084 Msa1193170:CDS
TTGGTAATTGTAGTGGAGCT+AGG 0.432493 8_1:-39396685 Msa1193170:three_prime_UTR
CTTTCGTTGCTTACACACTT+TGG 0.436512 8_1:+39397174 None:intergenic
ATGGAGCTAAAGAAAGAGAA+AGG 0.440964 8_1:-39396900 Msa1193170:three_prime_UTR
TGAGAAAATAAAGCAATAGA+AGG 0.441258 8_1:+39402148 None:intergenic
AAAATATAGTTGTGTTAAGA+TGG 0.445495 8_1:-39402536 Msa1193170:exon
TGCTCCAGAGACACTGGTTA+AGG 0.467200 8_1:-39396628 Msa1193170:three_prime_UTR
GCTTGTTCCCGAAATGTTTG+AGG 0.469196 8_1:+39397128 None:intergenic
TAATGATCTGCCAGTTAAGT+TGG 0.471479 8_1:-39400013 Msa1193170:CDS
GAAAGCTAAAAGAATACAAA+AGG 0.476345 8_1:-39396932 Msa1193170:three_prime_UTR
TGGAAATGTGTCTTCTCTTG+AGG 0.477195 8_1:-39398637 Msa1193170:intron
AATGATAAATCTAGTTGTGC+TGG 0.487533 8_1:+39402505 None:intergenic
TAAATTTAAATTAGATGTAC+CGG 0.487824 8_1:-39400272 Msa1193170:intron
TACAGATGATCAAGATGAGT+TGG 0.492255 8_1:-39402434 Msa1193170:CDS
GATAGACCTCCAGCATCATC+AGG 0.492527 8_1:-39400234 Msa1193170:intron
GTAAGTGATGTGGAAAAGAA+TGG 0.493092 8_1:+39402750 None:intergenic
TGGAGCTAAAGAAAGAGAAA+GGG 0.500898 8_1:-39396899 Msa1193170:three_prime_UTR
AGAGAAGACACATTTCCAAC+AGG 0.502518 8_1:+39398642 None:intergenic
AAGAGAAAGGGAAACAAGAA+AGG 0.505867 8_1:-39396887 Msa1193170:three_prime_UTR
TGGTTGAAAAGAGTTATTGT+TGG 0.506043 8_1:+39402267 None:intergenic
AAGAGCTATAGCTAGAGTGT+TGG 0.507485 8_1:-39396984 Msa1193170:three_prime_UTR
TCTTGAGCTAATGGATGTAA+AGG 0.520433 8_1:-39401703 Msa1193170:CDS
AACAGGGAAGCTTGGTTGCA+TGG 0.521093 8_1:-39398681 Msa1193170:CDS
TTGATAGTAACAGGGAAGCT+TGG 0.525381 8_1:-39398689 Msa1193170:CDS
AAGCATAAAATTGAGCTAAG+TGG 0.527251 8_1:-39402641 Msa1193170:five_prime_UTR
TATCACTAACCTGATGATGC+TGG 0.531876 8_1:+39400225 None:intergenic
TCACAAGAGCTTAGTTTGGA+AGG 0.532938 8_1:+39396824 None:intergenic
ATTGGAAAGAGAAGGGTCAA+AGG 0.536286 8_1:+39402357 None:intergenic
AAGCCAAAGGTCCATCCTGT+TGG 0.539624 8_1:-39398657 Msa1193170:CDS
GCCCTTAGATTGGAAAGAGA+AGG 0.540097 8_1:+39402349 None:intergenic
GCATAAAGCAACGAAGAAAA+GGG 0.544592 8_1:-39396865 Msa1193170:three_prime_UTR
AACCAGTGTCTCTGGAGCAC+CGG 0.544813 8_1:+39396632 None:intergenic
CTTGAAGCAGAAGCATCAAA+AGG 0.544886 8_1:+39402115 None:intergenic
GTGGTAGTCCAACGCATCCT+CGG 0.547370 8_1:+39402010 None:intergenic
TGAGGAAGAGCTTCCATCTG+AGG 0.558350 8_1:+39397146 None:intergenic
AACGAAAGATATTCCTCAGA+TGG 0.564563 8_1:-39397159 Msa1193170:CDS
TGAGAGCTCCGAGGATGCGT+TGG 0.564823 8_1:-39402018 Msa1193170:CDS
CCCTGTTACTATCAAACACA+TGG 0.569072 8_1:+39398697 None:intergenic
TACAATGAGTGTGAAATGAA+TGG 0.577173 8_1:+39402881 None:intergenic
GCAAACAAACATCAAGTTGG+AGG 0.579839 8_1:-39402462 Msa1193170:CDS
GAAGCATCAAAAGGTGGTTG+TGG 0.580777 8_1:+39402124 None:intergenic
ACAGCAAACAAACATCAAGT+TGG 0.580847 8_1:-39402465 Msa1193170:CDS
GGTTAGGTATGAGATTGTAG+AGG 0.587027 8_1:+39402311 None:intergenic
AAATTAATGGGCATAAGAGA+CGG 0.594538 8_1:-39396735 Msa1193170:three_prime_UTR
AACCGGTGCTCCAGAGACAC+TGG 0.597311 8_1:-39396634 Msa1193170:three_prime_UTR
CCCTTAGATTGGAAAGAGAA+GGG 0.605218 8_1:+39402350 None:intergenic
AAGACACATTTCCAACAGGA+TGG 0.611319 8_1:+39398646 None:intergenic
ATGATAAATCTAGTTGTGCT+GGG 0.613410 8_1:+39402506 None:intergenic
AACAAAGCGATTATGAAGAG+TGG 0.613873 8_1:+39401991 None:intergenic
CAATCTGATATGTATGACAA+TGG 0.620941 8_1:-39400093 Msa1193170:CDS
CCATGTGTTTGATAGTAACA+GGG 0.631014 8_1:-39398697 Msa1193170:CDS
TTGGTTGCATGGTAAGCCAA+AGG 0.634514 8_1:-39398670 Msa1193170:CDS
TTGACATAAATTCTTCAACA+AGG 0.639893 8_1:-39400038 Msa1193170:CDS
TGAGATCAAAGTTGTTGCCG+CGG 0.651120 8_1:-39402060 Msa1193170:CDS
AGTGATGATAGTAAGTGATG+TGG 0.654485 8_1:+39402740 None:intergenic
CACTAACCTGATGATGCTGG+AGG 0.671600 8_1:+39400228 None:intergenic
GAAGCAGAAGCATCAAAAGG+TGG 0.676780 8_1:+39402118 None:intergenic
TTTAAATTAGATGTACCGGA+CGG 0.677447 8_1:-39400268 Msa1193170:intron
CTGCGCTTTGAAGGAAACCG+CGG 0.685322 8_1:+39402043 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAATTTATAATAAAT+CGG + chr8_1:39401979-39401998 None:intergenic 0.0%
!!! ATTTTAAAACAACTAAAAAA+AGG + chr8_1:39398854-39398873 None:intergenic 10.0%
!! TTCATTAATATAGTTTAAAT+TGG - chr8_1:39399021-39399040 Msa1193170:intron 10.0%
!!! CTATTTTTAAAATAGATAAT+AGG + chr8_1:39399973-39399992 None:intergenic 10.0%
!!! TCTCTTTATATATATTTTTT+CGG + chr8_1:39400591-39400610 None:intergenic 10.0%
!! TTAAATTTGAAAGATTAAAA+TGG + chr8_1:39401484-39401503 None:intergenic 10.0%
!!! AATTATTAGTGTTTTGAAAA+GGG + chr8_1:39397179-39397198 None:intergenic 15.0%
!!! TATAAAAACAATTTTTGCTA+AGG + chr8_1:39398087-39398106 None:intergenic 15.0%
!!! ATTGTTTTTATATTTAGCTA+TGG - chr8_1:39398095-39398114 Msa1193170:intron 15.0%
!! TATTTCATTTAAATTGATAG+TGG + chr8_1:39399058-39399077 None:intergenic 15.0%
!! AAAGCAATAATAATACATTT+AGG + chr8_1:39399154-39399173 None:intergenic 15.0%
!! TAAATTTAAATTAGATGTAC+CGG - chr8_1:39399194-39399213 Msa1193170:intron 15.0%
!! TATAGTACAGTATATATTTA+TGG - chr8_1:39399540-39399559 Msa1193170:intron 15.0%
!!! ATATTATATTTTCTTAACCT+TGG - chr8_1:39399566-39399585 Msa1193170:intron 15.0%
!! GAAAAAATATATATAAAGAG+AGG - chr8_1:39400590-39400609 Msa1193170:intron 15.0%
!!! TTATTTTTCATTGAAGTATT+TGG - chr8_1:39400895-39400914 Msa1193170:intron 15.0%
!! AAATGTAAGAAAAGATATAT+AGG + chr8_1:39401120-39401139 None:intergenic 15.0%
!!! AATTTAGTCTTAAAATGTAT+AGG + chr8_1:39401528-39401547 None:intergenic 15.0%
!!! ATTTTTCTCTATTTACTTAT+TGG - chr8_1:39401676-39401695 Msa1193170:CDS 15.0%
!!! TTTTATCTCTTGTTAATTAA+AGG + chr8_1:39401712-39401731 None:intergenic 15.0%
!! ACAAAATTAAGTTAATGAAT+AGG + chr8_1:39402254-39402273 None:intergenic 15.0%
!!! AACTTAATTTTGTTTTACTA+AGG - chr8_1:39402261-39402280 Msa1193170:CDS 15.0%
!!! TTATAAAAACTTACTAGTTT+TGG + chr8_1:39402866-39402885 None:intergenic 15.0%
!!! CTAGTAAGTTTTTATAAAAA+TGG - chr8_1:39402869-39402888 Msa1193170:five_prime_UTR 15.0%
!!! CAACTAAATGACAATTTTTA+AGG + chr8_1:39396782-39396801 None:intergenic 20.0%
!! AAAATATAGTTGTGTTAAGA+TGG - chr8_1:39396930-39396949 Msa1193170:three_prime_UTR 20.0%
!!! GAATTATTAGTGTTTTGAAA+AGG + chr8_1:39397180-39397199 None:intergenic 20.0%
!!! TTATTTTGGTTTTGATGAAA+TGG + chr8_1:39397222-39397241 None:intergenic 20.0%
!!! TTAAGCTTTGGTAATTATTT+TGG + chr8_1:39397236-39397255 None:intergenic 20.0%
!! TCTATTTGTTTATTTGGTTA+TGG - chr8_1:39397681-39397700 Msa1193170:intron 20.0%
!!! GCTAATTTTGTATTGTTAAA+TGG - chr8_1:39397706-39397725 Msa1193170:intron 20.0%
!! AGAACTTAAAATAACATTGA+AGG + chr8_1:39397899-39397918 None:intergenic 20.0%
!!! TTTTAGAAATTTGATAGCTA+CGG + chr8_1:39398229-39398248 None:intergenic 20.0%
!!! ATTTTATTGCACAAGAAAAT+AGG - chr8_1:39398336-39398355 Msa1193170:intron 20.0%
!! TGAATTTACTCAATTGATAA+AGG + chr8_1:39398534-39398553 None:intergenic 20.0%
!! TAAAACAACTAAAAAAAGGA+TGG + chr8_1:39398850-39398869 None:intergenic 20.0%
!! AAGATTTATTGATCAAATGA+TGG - chr8_1:39399082-39399101 Msa1193170:intron 20.0%
!!! TTTATAGAGTATCATTAACA+CGG + chr8_1:39399178-39399197 None:intergenic 20.0%
!! CTCAATTTGTAATTAGTATT+AGG - chr8_1:39399267-39399286 Msa1193170:intron 20.0%
!! ATAGTAGATGAATGAATTTA+TGG + chr8_1:39399293-39399312 None:intergenic 20.0%
!!! GATTTTTCTTGTGTTTAAAA+TGG - chr8_1:39399343-39399362 Msa1193170:intron 20.0%
!!! GTTTTTCTTTATCTTGATTA+GGG + chr8_1:39399489-39399508 None:intergenic 20.0%
!!! TGTTTTTCTTTATCTTGATT+AGG + chr8_1:39399490-39399509 None:intergenic 20.0%
!! ATAAAGAAAAACATAGCATT+TGG - chr8_1:39399497-39399516 Msa1193170:intron 20.0%
!! GAACAAAGATATATATTACT+CGG + chr8_1:39399624-39399643 None:intergenic 20.0%
!! TATATATTTGTTTATGTGCA+GGG + chr8_1:39399782-39399801 None:intergenic 20.0%
!!! TAGTCTTAAAGCTAATTTTT+TGG - chr8_1:39400074-39400093 Msa1193170:CDS 20.0%
!! AATTTAAAAATGTTTACACG+CGG - chr8_1:39400248-39400267 Msa1193170:CDS 20.0%
!!! TTTTGATGAGATATAATGAT+TGG + chr8_1:39400380-39400399 None:intergenic 20.0%
!!! CTTTATATATATTTTTTCGG+TGG + chr8_1:39400588-39400607 None:intergenic 20.0%
!! TAACAGTTCAAAAATAAAGA+GGG + chr8_1:39400878-39400897 None:intergenic 20.0%
!! ATAACAGTTCAAAAATAAAG+AGG + chr8_1:39400879-39400898 None:intergenic 20.0%
!! CATCATTAATAAAAGCTTAA+TGG + chr8_1:39401187-39401206 None:intergenic 20.0%
!!! AAATCATATTAGTTTTTGAG+AGG - chr8_1:39401394-39401413 Msa1193170:intron 20.0%
!! ACAAGTTAAAATGTTATCTA+AGG - chr8_1:39401428-39401447 Msa1193170:intron 20.0%
!! TTAAAATGTTATCTAAGGAT+TGG - chr8_1:39401433-39401452 Msa1193170:intron 20.0%
!! TAGAGAAAAATAAATATGAG+AGG + chr8_1:39401667-39401686 None:intergenic 20.0%
!!! ATTTTGTTTTACTAAGGAAA+TGG - chr8_1:39402267-39402286 Msa1193170:CDS 20.0%
!! ATACAAAAGGAAAAAGTAAA+TGG - chr8_1:39402547-39402566 Msa1193170:five_prime_UTR 20.0%
!!! ATTAGATGTTTTATGTTAAC+CGG - chr8_1:39402815-39402834 Msa1193170:five_prime_UTR 20.0%
! ATAAAGCAATAGAAGGATTA+GGG + chr8_1:39397314-39397333 None:intergenic 25.0%
! AATAAAGCAATAGAAGGATT+AGG + chr8_1:39397315-39397334 None:intergenic 25.0%
! TGAGAAAATAAAGCAATAGA+AGG + chr8_1:39397321-39397340 None:intergenic 25.0%
!!! AAACTCGCTATAATTTTTTC+TGG - chr8_1:39397657-39397676 Msa1193170:intron 25.0%
!!! TCTGGTTCTATTTGTTTATT+TGG - chr8_1:39397675-39397694 Msa1193170:intron 25.0%
! ATGAGATTTAACATGTGATA+AGG + chr8_1:39397795-39397814 None:intergenic 25.0%
!! ACAATTTTCTCCCTTAATTA+GGG + chr8_1:39398174-39398193 None:intergenic 25.0%
!! TACAATTTTCTCCCTTAATT+AGG + chr8_1:39398175-39398194 None:intergenic 25.0%
!!! CTGTTTTAACATGTTAGTAT+CGG + chr8_1:39398657-39398676 None:intergenic 25.0%
! TGTTACATAGATACTATATC+AGG - chr8_1:39398766-39398785 Msa1193170:intron 25.0%
! GTTACATAGATACTATATCA+GGG - chr8_1:39398767-39398786 Msa1193170:intron 25.0%
! CACAACAAATCATATGAATT+TGG + chr8_1:39399000-39399019 None:intergenic 25.0%
! TTGACATAAATTCTTCAACA+AGG - chr8_1:39399428-39399447 Msa1193170:intron 25.0%
! ATACTGTACTATATATTACC+TGG + chr8_1:39399533-39399552 None:intergenic 25.0%
! AATGATAATCAACCAACAAT+GGG + chr8_1:39399646-39399665 None:intergenic 25.0%
! AAATGATAATCAACCAACAA+TGG + chr8_1:39399647-39399666 None:intergenic 25.0%
!!! TGTGATAAAGTAGCTTTATA+AGG - chr8_1:39399705-39399724 Msa1193170:intron 25.0%
! CTATATATTTGTTTATGTGC+AGG + chr8_1:39399783-39399802 None:intergenic 25.0%
! CTGCACATAAACAAATATAT+AGG - chr8_1:39399781-39399800 Msa1193170:intron 25.0%
! ATATATTCTTTACTAGCTAG+TGG - chr8_1:39399905-39399924 Msa1193170:intron 25.0%
! TATATTCTTTACTAGCTAGT+GGG - chr8_1:39399906-39399925 Msa1193170:intron 25.0%
! ATAGAGATATCTCTTTCTTT+AGG - chr8_1:39399989-39400008 Msa1193170:CDS 25.0%
! AATATGAGAATCTTAACATC+TGG + chr8_1:39400217-39400236 None:intergenic 25.0%
! ATAGAATTAAAGATTGCAGT+TGG - chr8_1:39400313-39400332 Msa1193170:intron 25.0%
!!! TCTAATTCTCTGAAATACTT+TGG + chr8_1:39400474-39400493 None:intergenic 25.0%
! AACTAGCAGAATAAGAAAAA+GGG - chr8_1:39400660-39400679 Msa1193170:intron 25.0%
!!! ATTTTGAGGTTGAAAGTTTA+TGG + chr8_1:39400974-39400993 None:intergenic 25.0%
! GATCCCAAAATAAATTGTAA+CGG - chr8_1:39401001-39401020 Msa1193170:intron 25.0%
!!! TGACCGTTACAATTTATTTT+GGG + chr8_1:39401007-39401026 None:intergenic 25.0%
!! ATGACCGTTACAATTTATTT+TGG + chr8_1:39401008-39401027 None:intergenic 25.0%
! GCTAAAAAAAGAACTTTGAT+GGG - chr8_1:39401152-39401171 Msa1193170:intron 25.0%
!!! TAATTCAAGTTGTGTTTAGA+GGG - chr8_1:39401302-39401321 Msa1193170:intron 25.0%
! AGAGAAGTTAGATATACTAT+AGG - chr8_1:39401331-39401350 Msa1193170:intron 25.0%
!!! ATATTAGTTTTTGAGAGGAT+TGG - chr8_1:39401399-39401418 Msa1193170:intron 25.0%
!!! AATGGTAGATTTTAAAGTAG+AGG + chr8_1:39401466-39401485 None:intergenic 25.0%
! ATTAGCTATATCAACTCAAA+TGG + chr8_1:39401864-39401883 None:intergenic 25.0%
!!! TTTGAGTTGATATAGCTAAT+TGG - chr8_1:39401864-39401883 Msa1193170:intron 25.0%
! GATTACAACAGAATAATTCT+AGG + chr8_1:39401938-39401957 None:intergenic 25.0%
! TGTATTAAGAAGAGACAAAA+AGG + chr8_1:39402163-39402182 None:intergenic 25.0%
! GAAAAAAGAGAAATAGATGA+AGG + chr8_1:39402201-39402220 None:intergenic 25.0%
!!! CTTTTTTCGTTTGTTTATGA+TGG - chr8_1:39402213-39402232 Msa1193170:CDS 25.0%
! AAGCTTAAAGAATCCAAATT+TGG - chr8_1:39402357-39402376 Msa1193170:CDS 25.0%
! GAAAGCTAAAAGAATACAAA+AGG - chr8_1:39402534-39402553 Msa1193170:exon 25.0%
! TTGCAAAGAGAGAAATTAAT+GGG - chr8_1:39402719-39402738 Msa1193170:five_prime_UTR 25.0%
!! TCACAAAGTAAGTGATATTT+TGG - chr8_1:39402762-39402781 Msa1193170:five_prime_UTR 25.0%
!!! TGATATTTTGGTAATTGTAG+TGG - chr8_1:39402774-39402793 Msa1193170:five_prime_UTR 25.0%
TACAATGAGTGTGAAATGAA+TGG + chr8_1:39396588-39396607 None:intergenic 30.0%
AAGCATAAAATTGAGCTAAG+TGG - chr8_1:39396825-39396844 Msa1193170:three_prime_UTR 30.0%
ATGATAAATCTAGTTGTGCT+GGG + chr8_1:39396963-39396982 None:intergenic 30.0%
AATGATAAATCTAGTTGTGC+TGG + chr8_1:39396964-39396983 None:intergenic 30.0%
!!! TTAGTGTTTTGAAAAGGGTT+AGG + chr8_1:39397174-39397193 None:intergenic 30.0%
TGGTTGAAAAGAGTTATTGT+TGG + chr8_1:39397202-39397221 None:intergenic 30.0%
AAAGCTTAAGTGAAGAGTTA+GGG - chr8_1:39397247-39397266 Msa1193170:intron 30.0%
GGTACGAAAATTTACTTTCA+TGG + chr8_1:39397524-39397543 None:intergenic 30.0%
AATCCAAACATGTTCAAAGA+AGG + chr8_1:39397545-39397564 None:intergenic 30.0%
CTTTGAACATGTTTGGATTA+AGG - chr8_1:39397546-39397565 Msa1193170:intron 30.0%
!!! CGATGACACATTATTTTTGT+CGG - chr8_1:39397587-39397606 Msa1193170:intron 30.0%
TTTGACAAAATTATCACGGT+GGG + chr8_1:39397640-39397659 None:intergenic 30.0%
CGAGTTTGACAAAATTATCA+CGG + chr8_1:39397644-39397663 None:intergenic 30.0%
TGTATTGTTAAATGGTGTTC+TGG - chr8_1:39397714-39397733 Msa1193170:intron 30.0%
!! TAAATGGTGTTCTGGATTTT+AGG - chr8_1:39397722-39397741 Msa1193170:intron 30.0%
! ATTAGCTCAAGAACTGATTT+GGG + chr8_1:39397755-39397774 None:intergenic 30.0%
ACATGTTAAATCTCATTTGC+AGG - chr8_1:39397799-39397818 Msa1193170:intron 30.0%
ATCTTCAACCTCAATTTCAA+AGG + chr8_1:39397930-39397949 None:intergenic 30.0%
! TTTGAAATTGAGGTTGAAGA+TGG - chr8_1:39397929-39397948 Msa1193170:intron 30.0%
! CTAGTTTGTAATGTAGTACA+AGG - chr8_1:39398017-39398036 Msa1193170:intron 30.0%
GGATATGTTTCAAATTCCAA+TGG - chr8_1:39398054-39398073 Msa1193170:intron 30.0%
TTGCTAAGGAAATTAACCAT+TGG + chr8_1:39398073-39398092 None:intergenic 30.0%
GAGAAATTCAAAATGAGTCT+TGG - chr8_1:39398267-39398286 Msa1193170:intron 30.0%
TTGAAAAATGTGACTAACCA+TGG + chr8_1:39398457-39398476 None:intergenic 30.0%
! ACACATCTAATCAAAAGTGT+TGG - chr8_1:39398743-39398762 Msa1193170:CDS 30.0%
ACAACTAAAAAAAGGATGGT+CGG + chr8_1:39398846-39398865 None:intergenic 30.0%
AATTTGGTTATGACTCATGT+GGG + chr8_1:39398984-39399003 None:intergenic 30.0%
ATGGAAAATAAACTTGCGTA+TGG - chr8_1:39399101-39399120 Msa1193170:intron 30.0%
TGGAAAATAAACTTGCGTAT+GGG - chr8_1:39399102-39399121 Msa1193170:intron 30.0%
TTTAAATTAGATGTACCGGA+CGG - chr8_1:39399198-39399217 Msa1193170:intron 30.0%
! TCTTGTGTTTAAAATGGAGT+AGG - chr8_1:39399349-39399368 Msa1193170:intron 30.0%
CAATCTGATATGTATGACAA+TGG - chr8_1:39399373-39399392 Msa1193170:intron 30.0%
TATATCTTTGTTCCCATTGT+TGG - chr8_1:39399631-39399650 Msa1193170:intron 30.0%
ATATAATTACCCCATCATCA+TGG + chr8_1:39399887-39399906 None:intergenic 30.0%
!!! TCTCTTTCTTTAGGATTTTG+TGG - chr8_1:39399998-39400017 Msa1193170:CDS 30.0%
!!! CTCTTTCTTTAGGATTTTGT+GGG - chr8_1:39399999-39400018 Msa1193170:CDS 30.0%
!!! TCTTTCTTTAGGATTTTGTG+GGG - chr8_1:39400000-39400019 Msa1193170:CDS 30.0%
! TTTTGTGGGGCTAATTTATA+AGG - chr8_1:39400013-39400032 Msa1193170:CDS 30.0%
TTTGTGGGGCTAATTTATAA+GGG - chr8_1:39400014-39400033 Msa1193170:CDS 30.0%
TAAGGGTAGCTATTATTACA+TGG - chr8_1:39400031-39400050 Msa1193170:CDS 30.0%
! AGACTAAGTTTTCCAACTAT+GGG + chr8_1:39400060-39400079 None:intergenic 30.0%
! AAGACTAAGTTTTCCAACTA+TGG + chr8_1:39400061-39400080 None:intergenic 30.0%
!! ACCTTACAAGTCGATTTTAT+AGG - chr8_1:39400283-39400302 Msa1193170:intron 30.0%
!! CCTTACAAGTCGATTTTATA+GGG - chr8_1:39400284-39400303 Msa1193170:intron 30.0%
TAAACATGGTGCAACAAATT+TGG + chr8_1:39400548-39400567 None:intergenic 30.0%
CAACTAGCAGAATAAGAAAA+AGG - chr8_1:39400659-39400678 Msa1193170:intron 30.0%
ACTAGCAGAATAAGAAAAAG+GGG - chr8_1:39400661-39400680 Msa1193170:intron 30.0%
!! CAGTATGCTTTTTGTATACA+TGG - chr8_1:39400721-39400740 Msa1193170:intron 30.0%
CTAATCAGAAAGTGATTCTA+AGG + chr8_1:39400936-39400955 None:intergenic 30.0%
! CTGATTAGTCAACAATGATT+TGG - chr8_1:39400948-39400967 Msa1193170:intron 30.0%
! TGGGATCAGAATAAATTTTG+AGG + chr8_1:39400988-39401007 None:intergenic 30.0%
CCACTAATTTGAATATGTGA+AGG + chr8_1:39401096-39401115 None:intergenic 30.0%
CCTTCACATATTCAAATTAG+TGG - chr8_1:39401093-39401112 Msa1193170:intron 30.0%
! TCTTACATTTGCTAACTACA+AGG - chr8_1:39401130-39401149 Msa1193170:intron 30.0%
GGCTAAAAAAAGAACTTTGA+TGG - chr8_1:39401151-39401170 Msa1193170:intron 30.0%
!! GTAATTCAAGTTGTGTTTAG+AGG - chr8_1:39401301-39401320 Msa1193170:intron 30.0%
GAAGTTAGATATACTATAGG+TGG - chr8_1:39401334-39401353 Msa1193170:intron 30.0%
AAATTGGCATCAATTGAGTT+GGG + chr8_1:39401582-39401601 None:intergenic 30.0%
ATATGAGAGGAATAGCTTAA+GGG + chr8_1:39401654-39401673 None:intergenic 30.0%
AATATGAGAGGAATAGCTTA+AGG + chr8_1:39401655-39401674 None:intergenic 30.0%
!! GTTTTACCTGATGATGATAT+TGG - chr8_1:39401902-39401921 Msa1193170:intron 30.0%
! CGATTAATTGGTTCTTGAAT+CGG + chr8_1:39402102-39402121 None:intergenic 30.0%
TTCAAGAACCAATTAATCGA+AGG - chr8_1:39402103-39402122 Msa1193170:CDS 30.0%
TACATTCTCCTTCGATTAAT+TGG + chr8_1:39402114-39402133 None:intergenic 30.0%
TTAAGAAGAGACAAAAAGGT+GGG + chr8_1:39402159-39402178 None:intergenic 30.0%
ATTAAGAAGAGACAAAAAGG+TGG + chr8_1:39402160-39402179 None:intergenic 30.0%
CCTAATGTGAATTCCAAATT+TGG + chr8_1:39402373-39402392 None:intergenic 30.0%
! CCAAATTTGGAATTCACATT+AGG - chr8_1:39402370-39402389 Msa1193170:CDS 30.0%
! TTTTCTCTGATTTTCTTTGC+AGG + chr8_1:39402513-39402532 None:intergenic 30.0%
CTTGCAAAGAGAGAAATTAA+TGG - chr8_1:39402718-39402737 Msa1193170:five_prime_UTR 30.0%
! AAATTAATGGGCATAAGAGA+CGG - chr8_1:39402731-39402750 Msa1193170:five_prime_UTR 30.0%
GTAAGTGATGTGGAAAAGAA+TGG + chr8_1:39396719-39396738 None:intergenic 35.0%
AGTGATGATAGTAAGTGATG+TGG + chr8_1:39396729-39396748 None:intergenic 35.0%
!! CTTGATGTTTGTTTGCTGTT+TGG + chr8_1:39397000-39397019 None:intergenic 35.0%
ACAGCAAACAAACATCAAGT+TGG - chr8_1:39397001-39397020 Msa1193170:three_prime_UTR 35.0%
TACAGATGATCAAGATGAGT+TGG - chr8_1:39397032-39397051 Msa1193170:three_prime_UTR 35.0%
! CAAGATGAGTTGGATGATTT+AGG - chr8_1:39397042-39397061 Msa1193170:three_prime_UTR 35.0%
! AGTTGGATGATTTAGGATTC+TGG - chr8_1:39397049-39397068 Msa1193170:three_prime_UTR 35.0%
TTGTAGAGGTTTGAAGAAGA+AGG + chr8_1:39397144-39397163 None:intergenic 35.0%
CTAACTCTTCACTTAAGCTT+TGG + chr8_1:39397248-39397267 None:intergenic 35.0%
CAAAGCTTAAGTGAAGAGTT+AGG - chr8_1:39397246-39397265 Msa1193170:intron 35.0%
TACACTGGAATTCCTCTAAT+AGG + chr8_1:39397282-39397301 None:intergenic 35.0%
!! TTAGGGTTTTGATGATACAC+TGG + chr8_1:39397297-39397316 None:intergenic 35.0%
AACAAAGCGATTATGAAGAG+TGG + chr8_1:39397478-39397497 None:intergenic 35.0%
! TGTTCATGCTGTTGAACTTT+TGG - chr8_1:39397494-39397513 Msa1193170:intron 35.0%
! GTTCATGCTGTTGAACTTTT+GGG - chr8_1:39397495-39397514 Msa1193170:intron 35.0%
GTACCTTCTTTGAACATGTT+TGG - chr8_1:39397539-39397558 Msa1193170:intron 35.0%
GTTTGACAAAATTATCACGG+TGG + chr8_1:39397641-39397660 None:intergenic 35.0%
CATTAGCTCAAGAACTGATT+TGG + chr8_1:39397756-39397775 None:intergenic 35.0%
CAAATCAGTTCTTGAGCTAA+TGG - chr8_1:39397754-39397773 Msa1193170:intron 35.0%
! TCTTGAGCTAATGGATGTAA+AGG - chr8_1:39397763-39397782 Msa1193170:intron 35.0%
!! TCTGTAGTCCTTTGAAATTG+AGG - chr8_1:39397919-39397938 Msa1193170:intron 35.0%
!! GTTCTGATTGCGTGTTTTAA+TGG - chr8_1:39397956-39397975 Msa1193170:intron 35.0%
TTGTAATGTAGTACAAGGAG+TGG - chr8_1:39398022-39398041 Msa1193170:intron 35.0%
! AGACTAAGTAGCTTTTTGCT+TGG - chr8_1:39398136-39398155 Msa1193170:intron 35.0%
AGAATGAACCACCCTAATTA+AGG - chr8_1:39398160-39398179 Msa1193170:intron 35.0%
GAATGAACCACCCTAATTAA+GGG - chr8_1:39398161-39398180 Msa1193170:intron 35.0%
! ATTTTCTCCCTTAATTAGGG+TGG + chr8_1:39398171-39398190 None:intergenic 35.0%
! TATCGTATCAGCTTTAACCA+TGG - chr8_1:39398437-39398456 Msa1193170:intron 35.0%
!!! TTCTGGTTTTCTGGTAAATG+TGG + chr8_1:39398485-39398504 None:intergenic 35.0%
!!! AACAAATGGTTCTGGTTTTC+TGG + chr8_1:39398494-39398513 None:intergenic 35.0%
ATGCAGAAAACAAATGGTTC+TGG + chr8_1:39398502-39398521 None:intergenic 35.0%
TAGCTGATGCAGAAAACAAA+TGG + chr8_1:39398508-39398527 None:intergenic 35.0%
TGTTGACACATTCTAAACAC+TGG - chr8_1:39398718-39398737 Msa1193170:CDS 35.0%
CAAATTCCAATGTTGATGTG+TGG - chr8_1:39398799-39398818 Msa1193170:intron 35.0%
! ATTCTCATTTTGCCCACTTT+AGG - chr8_1:39398947-39398966 Msa1193170:intron 35.0%
GAATTTGGTTATGACTCATG+TGG + chr8_1:39398985-39399004 None:intergenic 35.0%
! TATCTGTAATTTTCACCGTC+CGG + chr8_1:39399216-39399235 None:intergenic 35.0%
ATGTATGACAATGGTTCATC+TGG - chr8_1:39399382-39399401 Msa1193170:intron 35.0%
TAATGATCTGCCAGTTAAGT+TGG - chr8_1:39399453-39399472 Msa1193170:intron 35.0%
ATTTCTGCATCCAACTTAAC+TGG + chr8_1:39399466-39399485 None:intergenic 35.0%
CATAGATAAAGAAATCCCCA+CGG + chr8_1:39399593-39399612 None:intergenic 35.0%
TAGGCACGAAAATTCACAAA+AGG - chr8_1:39399800-39399819 Msa1193170:intron 35.0%
GGAGAAAAGCAAGTAAAAAC+AGG - chr8_1:39399927-39399946 Msa1193170:intron 35.0%
! GACTAAGTTTTCCAACTATG+GGG + chr8_1:39400059-39400078 None:intergenic 35.0%
TGCACCAAGATTTCTAACTA+GGG + chr8_1:39400105-39400124 None:intergenic 35.0%
TTGCACCAAGATTTCTAACT+AGG + chr8_1:39400106-39400125 None:intergenic 35.0%
! AGTTAGAAATCTTGGTGCAA+AGG - chr8_1:39400106-39400125 Msa1193170:intron 35.0%
! GTTAGAAATCTTGGTGCAAA+GGG - chr8_1:39400107-39400126 Msa1193170:intron 35.0%
TGCAGATAGGAAGAATTCAA+AGG + chr8_1:39400142-39400161 None:intergenic 35.0%
TTGAGATGAGATACCCTAAT+TGG - chr8_1:39400180-39400199 Msa1193170:intron 35.0%
ATGAGAATCTTAACATCTGG+AGG + chr8_1:39400214-39400233 None:intergenic 35.0%
!! CCCTATAAAATCGACTTGTA+AGG + chr8_1:39400287-39400306 None:intergenic 35.0%
AGAGAGGTAAAGATGTGATA+TGG - chr8_1:39400606-39400625 Msa1193170:intron 35.0%
AAGATGTGATATGGATCACA+TGG - chr8_1:39400615-39400634 Msa1193170:intron 35.0%
AGATGTGATATGGATCACAT+GGG - chr8_1:39400616-39400635 Msa1193170:intron 35.0%
TATACATGGCTTCCACTAAT+GGG - chr8_1:39400735-39400754 Msa1193170:intron 35.0%
GAGAGAATATTTCCCATTAG+TGG + chr8_1:39400750-39400769 None:intergenic 35.0%
! TCCATGTGTTTGATAGTAAC+AGG - chr8_1:39400768-39400787 Msa1193170:intron 35.0%
! CCATGTGTTTGATAGTAACA+GGG - chr8_1:39400769-39400788 Msa1193170:intron 35.0%
! TGCAGTAGGTTTAGGTTTAT+GGG + chr8_1:39401229-39401248 None:intergenic 35.0%
! ATGCAGTAGGTTTAGGTTTA+TGG + chr8_1:39401230-39401249 None:intergenic 35.0%
GACATTACAATGAAGAAAGC+TGG - chr8_1:39401260-39401279 Msa1193170:intron 35.0%
CAAATTGGCATCAATTGAGT+TGG + chr8_1:39401583-39401602 None:intergenic 35.0%
CAACTCAATTGATGCCAATT+TGG - chr8_1:39401581-39401600 Msa1193170:intron 35.0%
CTACAAAAGAACCTCCAAAT+TGG + chr8_1:39401598-39401617 None:intergenic 35.0%
! GAGGTTCTTTTGTAGAGTTT+GGG - chr8_1:39401603-39401622 Msa1193170:intron 35.0%
! TTTTCTCTCTTCACTTTGGT+TGG + chr8_1:39401836-39401855 None:intergenic 35.0%
! GTGTTTTTCTCTCTTCACTT+TGG + chr8_1:39401840-39401859 None:intergenic 35.0%
! TAATTGGCATTTTGAGCACT+TGG - chr8_1:39401880-39401899 Msa1193170:intron 35.0%
AACGAAAGATATTCCTCAGA+TGG - chr8_1:39402307-39402326 Msa1193170:CDS 35.0%
AAGCTCTTCCTCAAACATTT+CGG - chr8_1:39402330-39402349 Msa1193170:CDS 35.0%
ATGGAGCTAAAGAAAGAGAA+AGG - chr8_1:39402566-39402585 Msa1193170:five_prime_UTR 35.0%
TGGAGCTAAAGAAAGAGAAA+GGG - chr8_1:39402567-39402586 Msa1193170:five_prime_UTR 35.0%
AAGAGAAAGGGAAACAAGAA+AGG - chr8_1:39402579-39402598 Msa1193170:five_prime_UTR 35.0%
GCATAAAGCAACGAAGAAAA+GGG - chr8_1:39402601-39402620 Msa1193170:five_prime_UTR 35.0%
AATCTCACAAGAGCTTAGTT+TGG + chr8_1:39402649-39402668 None:intergenic 35.0%
!! GCAAACAAACATCAAGTTGG+AGG - chr8_1:39397004-39397023 Msa1193170:three_prime_UTR 40.0%
! AGGATTCTGGAAAAGAGCTT+TGG - chr8_1:39397062-39397081 Msa1193170:three_prime_UTR 40.0%
ATTGGAAAGAGAAGGGTCAA+AGG + chr8_1:39397112-39397131 None:intergenic 40.0%
ACCCTTCTCTTTCCAATCTA+AGG - chr8_1:39397115-39397134 Msa1193170:CDS 40.0%
CCCTTAGATTGGAAAGAGAA+GGG + chr8_1:39397119-39397138 None:intergenic 40.0%
CCCTTCTCTTTCCAATCTAA+GGG - chr8_1:39397116-39397135 Msa1193170:CDS 40.0%
GGTTAGGTATGAGATTGTAG+AGG + chr8_1:39397158-39397177 None:intergenic 40.0%
GGGTTTCTCAAACCTATTAG+AGG - chr8_1:39397267-39397286 Msa1193170:intron 40.0%
!! CTTGAAGCAGAAGCATCAAA+AGG + chr8_1:39397354-39397373 None:intergenic 40.0%
AATGTAGTACAAGGAGTGGT+TGG - chr8_1:39398026-39398045 Msa1193170:intron 40.0%
!! TACAAGGAGTGGTTGGTTTA+TGG - chr8_1:39398033-39398052 Msa1193170:intron 40.0%
TCAAAATGAGTCTTGGTCAG+TGG - chr8_1:39398274-39398293 Msa1193170:intron 40.0%
TCTGATATTCGTGTCTTTGG+TGG + chr8_1:39398627-39398646 None:intergenic 40.0%
GTGTCTGATATTCGTGTCTT+TGG + chr8_1:39398630-39398649 None:intergenic 40.0%
CAAGATCCACACATCAACAT+TGG + chr8_1:39398808-39398827 None:intergenic 40.0%
CAATGTTGATGTGTGGATCT+TGG - chr8_1:39398806-39398825 Msa1193170:intron 40.0%
! TCATTTTGCCCACTTTAGGT+GGG - chr8_1:39398951-39398970 Msa1193170:intron 40.0%
! TATCACTAACCTGATGATGC+TGG + chr8_1:39399244-39399263 None:intergenic 40.0%
! ATTTTCTTAACCTTGGTCCG+TGG - chr8_1:39399573-39399592 Msa1193170:intron 40.0%
! TTTTCTTAACCTTGGTCCGT+GGG - chr8_1:39399574-39399593 Msa1193170:intron 40.0%
!!! ATTTGGGTGCTCTTGTTTTG+AGG + chr8_1:39399863-39399882 None:intergenic 40.0%
CACCCAAATTCCATGATGAT+GGG - chr8_1:39399874-39399893 Msa1193170:intron 40.0%
! ACCCAAATTCCATGATGATG+GGG - chr8_1:39399875-39399894 Msa1193170:intron 40.0%
ACCCCATCATCATGGAATTT+GGG + chr8_1:39399879-39399898 None:intergenic 40.0%
TACCCCATCATCATGGAATT+TGG + chr8_1:39399880-39399899 None:intergenic 40.0%
AGACCCCTAGTTAGAAATCT+TGG - chr8_1:39400098-39400117 Msa1193170:CDS 40.0%
GCACCAAGATTTCTAACTAG+GGG + chr8_1:39400104-39400123 None:intergenic 40.0%
AACAATGTGTCTGTGCAGAT+AGG + chr8_1:39400155-39400174 None:intergenic 40.0%
GATGTGATATGGATCACATG+GGG - chr8_1:39400617-39400636 Msa1193170:intron 40.0%
GTATACATGGCTTCCACTAA+TGG - chr8_1:39400734-39400753 Msa1193170:intron 40.0%
CCCTGTTACTATCAAACACA+TGG + chr8_1:39400772-39400791 None:intergenic 40.0%
! TTGATAGTAACAGGGAAGCT+TGG - chr8_1:39400777-39400796 Msa1193170:intron 40.0%
AAGACACATTTCCAACAGGA+TGG + chr8_1:39400823-39400842 None:intergenic 40.0%
AGAGAAGACACATTTCCAAC+AGG + chr8_1:39400827-39400846 None:intergenic 40.0%
TGGAAATGTGTCTTCTCTTG+AGG - chr8_1:39400829-39400848 Msa1193170:intron 40.0%
! GAAGTATTTGGCTCCATGTT+TGG - chr8_1:39400907-39400926 Msa1193170:intron 40.0%
! GATTCTAAGGAGTCCAAACA+TGG + chr8_1:39400923-39400942 None:intergenic 40.0%
! GCAGTAGGTTTAGGTTTATG+GGG + chr8_1:39401228-39401247 None:intergenic 40.0%
GAGACAAATGCAGTAGGTTT+AGG + chr8_1:39401237-39401256 None:intergenic 40.0%
!! GTCTTTGAGACAAATGCAGT+AGG + chr8_1:39401243-39401262 None:intergenic 40.0%
!! TTCAAGTTGTGTTTAGAGGG+AGG - chr8_1:39401305-39401324 Msa1193170:intron 40.0%
CTCAATTGATGCCAATTTGG+AGG - chr8_1:39401584-39401603 Msa1193170:intron 40.0%
! GGAGGTTCTTTTGTAGAGTT+TGG - chr8_1:39401602-39401621 Msa1193170:intron 40.0%
! GAGTTTGGGATTGTTTGTGT+TGG - chr8_1:39401617-39401636 Msa1193170:intron 40.0%
GAGACTCCAATATCATCATC+AGG + chr8_1:39401911-39401930 None:intergenic 40.0%
CTTTCGTTGCTTACACACTT+TGG + chr8_1:39402295-39402314 None:intergenic 40.0%
AGCTCTTCCTCAAACATTTC+GGG - chr8_1:39402331-39402350 Msa1193170:CDS 40.0%
AAGAGCTATAGCTAGAGTGT+TGG - chr8_1:39402482-39402501 Msa1193170:CDS 40.0%
GGCATAAAGCAACGAAGAAA+AGG - chr8_1:39402600-39402619 Msa1193170:five_prime_UTR 40.0%
! TCACAAGAGCTTAGTTTGGA+AGG + chr8_1:39402645-39402664 None:intergenic 40.0%
! TTGGTAATTGTAGTGGAGCT+AGG - chr8_1:39402781-39402800 Msa1193170:five_prime_UTR 40.0%
GCCCTTAGATTGGAAAGAGA+AGG + chr8_1:39397120-39397139 None:intergenic 45.0%
AGAAGAAGGAGCCCTTAGAT+TGG + chr8_1:39397130-39397149 None:intergenic 45.0%
! GAAGCATCAAAAGGTGGTTG+TGG + chr8_1:39397345-39397364 None:intergenic 45.0%
!! GAAGCAGAAGCATCAAAAGG+TGG + chr8_1:39397351-39397370 None:intergenic 45.0%
TGAGATCAAAGTTGTTGCCG+CGG - chr8_1:39397406-39397425 Msa1193170:intron 45.0%
! CATGCTGTTGAACTTTTGGG+TGG - chr8_1:39397498-39397517 Msa1193170:intron 45.0%
TGATGTGTGGATCTTGGTAG+CGG - chr8_1:39398812-39398831 Msa1193170:intron 45.0%
! CTCATTTTGCCCACTTTAGG+TGG - chr8_1:39398950-39398969 Msa1193170:intron 45.0%
! GCATTTGGAGCAAATCTTCC+AGG - chr8_1:39399512-39399531 Msa1193170:intron 45.0%
TTTCTTAACCTTGGTCCGTG+GGG - chr8_1:39399575-39399594 Msa1193170:intron 45.0%
GCACCCAAATTCCATGATGA+TGG - chr8_1:39399873-39399892 Msa1193170:intron 45.0%
ATTACATGGAGCCCCATAGT+TGG - chr8_1:39400045-39400064 Msa1193170:CDS 45.0%
GGAGGCTTTGCTTCCAATTA+GGG + chr8_1:39400196-39400215 None:intergenic 45.0%
TGGAGGCTTTGCTTCCAATT+AGG + chr8_1:39400197-39400216 None:intergenic 45.0%
TTGGTTGCATGGTAAGCCAA+AGG - chr8_1:39400796-39400815 Msa1193170:intron 45.0%
TTTCCAACAGGATGGACCTT+TGG + chr8_1:39400815-39400834 None:intergenic 45.0%
GCTTGTTCCCGAAATGTTTG+AGG + chr8_1:39402341-39402360 None:intergenic 45.0%
!!! TATTTTTAAAATAGATAATA+GGG + chr8_1:39399972-39399991 None:intergenic 5.0%
ATCCTCTCCTCTGTCATGAC+TGG - chr8_1:39398404-39398423 Msa1193170:intron 50.0%
TCCTCTCCTCTGTCATGACT+GGG - chr8_1:39398405-39398424 Msa1193170:intron 50.0%
AAACTCCCCAGTCATGACAG+AGG + chr8_1:39398414-39398433 None:intergenic 50.0%
! TTTTGCCCACTTTAGGTGGG+AGG - chr8_1:39398954-39398973 Msa1193170:intron 50.0%
GATAGACCTCCAGCATCATC+AGG - chr8_1:39399232-39399251 Msa1193170:intron 50.0%
! CACTAACCTGATGATGCTGG+AGG + chr8_1:39399241-39399260 None:intergenic 50.0%
AAAGAAATCCCCACGGACCA+AGG + chr8_1:39399586-39399605 None:intergenic 50.0%
GTGATATGGATCACATGGGG+TGG - chr8_1:39400620-39400639 Msa1193170:intron 50.0%
AACAGGGAAGCTTGGTTGCA+TGG - chr8_1:39400785-39400804 Msa1193170:intron 50.0%
AAGCCAAAGGTCCATCCTGT+TGG - chr8_1:39400809-39400828 Msa1193170:intron 50.0%
TGAGGAAGAGCTTCCATCTG+AGG + chr8_1:39402323-39402342 None:intergenic 50.0%
! TGCTCCAGAGACACTGGTTA+AGG - chr8_1:39402838-39402857 Msa1193170:five_prime_UTR 50.0%
GGTTCCTTAACCAGTGTCTC+TGG + chr8_1:39402845-39402864 None:intergenic 50.0%
!! CTGCGCTTTGAAGGAAACCG+CGG + chr8_1:39397426-39397445 None:intergenic 55.0%
GTGGTAGTCCAACGCATCCT+CGG + chr8_1:39397459-39397478 None:intergenic 55.0%
CCTCTCCTCTGTCATGACTG+GGG - chr8_1:39398406-39398425 Msa1193170:intron 55.0%
GTTCGCCTCCCACCTAAAGT+GGG + chr8_1:39398962-39398981 None:intergenic 55.0%
!! AACCAGTGTCTCTGGAGCAC+CGG + chr8_1:39402837-39402856 None:intergenic 55.0%
GCTCTCACGCTGCGCTTTGA+AGG + chr8_1:39397435-39397454 None:intergenic 60.0%
TGAGAGCTCCGAGGATGCGT+TGG - chr8_1:39397448-39397467 Msa1193170:intron 60.0%
CCCCAGTCATGACAGAGGAG+AGG + chr8_1:39398409-39398428 None:intergenic 60.0%
GGTTCGCCTCCCACCTAAAG+TGG + chr8_1:39398963-39398982 None:intergenic 60.0%
AACCGGTGCTCCAGAGACAC+TGG - chr8_1:39402832-39402851 Msa1193170:five_prime_UTR 60.0%
AGCGCAGCGTGAGAGCTCCG+AGG - chr8_1:39397439-39397458 Msa1193170:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 39396575 39402913 39396575 ID=Msa1193170;Name=Msa1193170
chr8_1 mRNA 39396575 39402913 39396575 ID=Msa1193170-mRNA-1;Parent=Msa1193170;Name=Msa1193170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=374|0.8|0.83|1|1|1|6|508|371
chr8_1 exon 39396575 39397205 39396575 ID=Msa1193170-mRNA-1:exon:12928;Parent=Msa1193170-mRNA-1
chr8_1 exon 39398638 39398764 39398638 ID=Msa1193170-mRNA-1:exon:12927;Parent=Msa1193170-mRNA-1
chr8_1 exon 39399955 39400117 39399955 ID=Msa1193170-mRNA-1:exon:12926;Parent=Msa1193170-mRNA-1
chr8_1 exon 39400235 39400280 39400235 ID=Msa1193170-mRNA-1:exon:12925;Parent=Msa1193170-mRNA-1
chr8_1 exon 39401668 39401744 39401668 ID=Msa1193170-mRNA-1:exon:12924;Parent=Msa1193170-mRNA-1
chr8_1 exon 39401960 39402913 39401960 ID=Msa1193170-mRNA-1:exon:12923;Parent=Msa1193170-mRNA-1
chr8_1 five_prime_UTR 39402540 39402913 39402540 ID=Msa1193170-mRNA-1:five_prime_utr;Parent=Msa1193170-mRNA-1
chr8_1 CDS 39401960 39402539 39401960 ID=Msa1193170-mRNA-1:cds;Parent=Msa1193170-mRNA-1
chr8_1 CDS 39401668 39401744 39401668 ID=Msa1193170-mRNA-1:cds;Parent=Msa1193170-mRNA-1
chr8_1 CDS 39400235 39400280 39400235 ID=Msa1193170-mRNA-1:cds;Parent=Msa1193170-mRNA-1
chr8_1 CDS 39399955 39400117 39399955 ID=Msa1193170-mRNA-1:cds;Parent=Msa1193170-mRNA-1
chr8_1 CDS 39398638 39398764 39398638 ID=Msa1193170-mRNA-1:cds;Parent=Msa1193170-mRNA-1
chr8_1 CDS 39397083 39397205 39397083 ID=Msa1193170-mRNA-1:cds;Parent=Msa1193170-mRNA-1
chr8_1 three_prime_UTR 39396575 39397082 39396575 ID=Msa1193170-mRNA-1:three_prime_utr;Parent=Msa1193170-mRNA-1
Gene Sequence

>Msa1193170

ATGGAGCTATTCCCAGCACAACTAGATTTATCATTGCAAATCAGTCTTCCAAACAGCAAACAAACATCAAGTTGGAGGAGAAATACAGATGATCAAGATGAGTTGGATGATTTAGGATTCTGGAAAAGAGCTTTGGAGTCAAGAACAGAAGCAAATCATACCTTTGACCCTTCTCTTTCCAATCTAAGGGCTCCTTCTTCTTCAAACCTCTACAATCTCATACCTAACCCTTTTCAAAACACTAATAATTCCAACAATAACTCTTTTCAACCATTTCATCAAAACCAAAATAATTACCAAAGCTTAAGTGAAGAGTTAGGGTTTCTCAAACCTATTAGAGGAATTCCAGTGTATCATCAAAACCCTAATCCTTCTATTGCTTTATTTTCTCAACCACAACCACCTTTTGATGCTTCTGCTTCAAGTTCATCAACAGCTTTTCATTCTCATACTTCGATGAGATCAAAGTTGTTGCCGCGGTTTCCTTCAAAGCGCAGCGTGAGAGCTCCGAGGATGCGTTGGACTACCACTCTTCATAATCGCTTTGTTCATGCTGTTGAACTTTTGGGTGGCCATGAAAGAGCTACACCCAAATCAGTTCTTGAGCTAATGGATGTAAAGGATCTAACCTTATCACATGTTAAATCTCATTTGCAGATGTACCGGACGGTGAAAATTACAGATAGACCTCCAGCATCATCAGGTCAATCTGATATGTATGACAATGGTTCATCTGGAGATACTTCTGAAGACTTCATGTTTGACATAAATTCTTCAACAAGGTCTAATGATCTGCCAGTTAAGTTGGATGCAGAAATCCCTAATCAAGATAAAGAAAAACATAGCATTTGGAGCAAATCTTCCAGTATGCTTTTTGTATACATGGCTTCCACTAATGGGAAATATTCTCTCCATGTGTTTGATAGTAACAGGGAAGCTTGGTTGCATGGTAAGCCAAAGGTCCATCCTGTTGGAAATGTGTCTTCTCTTGAGGAAATGGATCCAAAGTGTGTAAGCAACGAAAGATATTCCTCAGATGGAAGCTCTTCCTCAAACATTTCGGGAACAAGCTTAAAGAATCCAAATTTGGAATTCACATTAGGCAACTCAGTTTGA
Protein sequence

>Msa1193170

MELFPAQLDLSLQISLPNSKQTSSWRRNTDDQDELDDLGFWKRALESRTEANHTFDPSLSNLRAPSSSNLYNLIPNPFQNTNNSNNNSFQPFHQNQNNYQSLSEELGFLKPIRGIPVYHQNPNPSIALFSQPQPPFDASASSSSTAFHSHTSMRSKLLPRFPSKRSVRAPRMRWTTTLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLSHVKSHLQMYRTVKITDRPPASSGQSDMYDNGSSGDTSEDFMFDINSSTRSNDLPVKLDAEIPNQDKEKHSIWSKSSSMLFVYMASTNGKYSLHVFDSNREAWLHGKPKVHPVGNVSSLEEMDPKCVSNERYSSDGSSSSNISGTSLKNPNLEFTLGNSV*