Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034810 | sp|Q9SVD0|SMXL3_ARATH | 45.655 | 863 | 398 | 23 | 1 | 845 | 1 | 810 | 0.0 | 631 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0034810 | 0.890578 | 8.684059e-74 | -8.615850e-47 |
| Msa0002580 | Msa0034810 | 0.882023 | 1.474029e-70 | -8.615850e-47 |
| Msa0005890 | Msa0034810 | 0.828123 | 1.070844e-54 | -8.615850e-47 |
| Msa0018160 | Msa0034810 | 0.801474 | 8.851967e-49 | -8.615850e-47 |
| Msa0034810 | Msa0035060 | 0.806374 | 8.485659e-50 | -8.615850e-47 |
| Msa0034810 | Msa0036870 | 0.844796 | 6.056150e-59 | -8.615850e-47 |
| Msa0034810 | Msa0052260 | 0.807053 | 6.098072e-50 | -8.615850e-47 |
| Msa0034810 | Msa0054690 | 0.807382 | 5.194674e-50 | -8.615850e-47 |
| Msa0034810 | Msa0071860 | 0.805488 | 1.302745e-49 | -8.615850e-47 |
| Msa0034810 | Msa0080090 | 0.807071 | 6.046281e-50 | -8.615850e-47 |
| Msa0034810 | Msa0081090 | 0.807047 | 6.117425e-50 | -8.615850e-47 |
| Msa0034810 | Msa0081390 | 0.805604 | 1.232107e-49 | -8.615850e-47 |
| Msa0034810 | Msa0081450 | 0.802804 | 4.715772e-49 | -8.615850e-47 |
| Msa0034810 | Msa0094780 | 0.801974 | 6.988119e-49 | -8.615850e-47 |
| Msa0034810 | Msa0097260 | 0.802222 | 6.215510e-49 | -8.615850e-47 |
| Msa0034810 | Msa0119830 | 0.806697 | 7.254800e-50 | -8.615850e-47 |
| Msa0034810 | Msa0120990 | 0.800431 | 1.446171e-48 | -8.615850e-47 |
| Msa0034810 | Msa0129940 | 0.871170 | 8.380077e-67 | -8.615850e-47 |
| Msa0034810 | Msa0131900 | 0.811317 | 7.435945e-51 | -8.615850e-47 |
| Msa0034810 | Msa0146040 | 0.805632 | 1.215527e-49 | -8.615850e-47 |
| Msa0034810 | Msa0147730 | 0.800124 | 1.669564e-48 | -8.615850e-47 |
| Msa0034810 | Msa0173690 | 0.817613 | 3.011165e-52 | -8.615850e-47 |
| Msa0034810 | Msa0174450 | 0.816296 | 5.949375e-52 | -8.615850e-47 |
| Msa0034810 | Msa0175730 | 0.882406 | 1.069968e-70 | -8.615850e-47 |
| Msa0034810 | Msa0178560 | 0.816131 | 6.475996e-52 | -8.615850e-47 |
| Msa0034810 | Msa0186920 | 0.818589 | 1.811354e-52 | -8.615850e-47 |
| Msa0034810 | Msa0191020 | 0.813290 | 2.758732e-51 | -8.615850e-47 |
| Msa0034810 | Msa0194820 | 0.803477 | 3.421890e-49 | -8.615850e-47 |
| Msa0034810 | Msa0194840 | 0.807085 | 6.004419e-50 | -8.615850e-47 |
| Msa0034810 | Msa0211030 | 0.833751 | 4.454945e-56 | -8.615850e-47 |
| Msa0034810 | Msa0211150 | 0.802621 | 5.142962e-49 | -8.615850e-47 |
| Msa0034810 | Msa0221000 | 0.812393 | 4.335726e-51 | -8.615850e-47 |
| Msa0034810 | Msa0223080 | 0.809541 | 1.798460e-50 | -8.615850e-47 |
| Msa0034810 | Msa0225100 | 0.842422 | 2.611990e-58 | -8.615850e-47 |
| Msa0034810 | Msa0225860 | 0.845883 | 3.075734e-59 | -8.615850e-47 |
| Msa0034810 | Msa0230800 | 0.804716 | 1.890047e-49 | -8.615850e-47 |
| Msa0034810 | Msa0233320 | 0.817381 | 3.395660e-52 | -8.615850e-47 |
| Msa0034810 | Msa0244640 | 0.889093 | 3.297649e-73 | -8.615850e-47 |
| Msa0034810 | Msa0265850 | 0.818336 | 2.066722e-52 | -8.615850e-47 |
| Msa0034810 | Msa0266180 | 0.843775 | 1.138875e-58 | -8.615850e-47 |
| Msa0034810 | Msa0267920 | 0.802820 | 4.679873e-49 | -8.615850e-47 |
| Msa0034810 | Msa0270340 | 0.812448 | 4.218631e-51 | -8.615850e-47 |
| Msa0034810 | Msa0283330 | 0.864110 | 1.538540e-64 | -8.615850e-47 |
| Msa0034810 | Msa0287740 | 0.860252 | 2.350740e-63 | -8.615850e-47 |
| Msa0034810 | Msa0298470 | 0.818992 | 1.467438e-52 | -8.615850e-47 |
| Msa0034810 | Msa0300270 | 0.832801 | 7.680735e-56 | -8.615850e-47 |
| Msa0034810 | Msa0300320 | 0.808806 | 2.584714e-50 | -8.615850e-47 |
| Msa0034810 | Msa0302160 | 0.803725 | 3.038967e-49 | -8.615850e-47 |
| Msa0034810 | Msa0321620 | 0.849923 | 2.367136e-60 | -8.615850e-47 |
| Msa0034810 | Msa0337700 | 0.845135 | 4.903574e-59 | -8.615850e-47 |
| Msa0034810 | Msa0339490 | 0.803172 | 3.957424e-49 | -8.615850e-47 |
| Msa0034810 | Msa0363200 | 0.808273 | 3.358033e-50 | -8.615850e-47 |
| Msa0034810 | Msa0371170 | 0.828201 | 1.025747e-54 | -8.615850e-47 |
| Msa0034810 | Msa0376630 | 0.818401 | 1.998857e-52 | -8.615850e-47 |
| Msa0034810 | Msa0378720 | 0.812263 | 4.628401e-51 | -8.615850e-47 |
| Msa0034810 | Msa0405680 | 0.840843 | 6.809805e-58 | -8.615850e-47 |
| Msa0034810 | Msa0418970 | 0.821987 | 3.013327e-53 | -8.615850e-47 |
| Msa0034810 | Msa0425170 | 0.822785 | 1.966871e-53 | -8.615850e-47 |
| Msa0034810 | Msa0428370 | 0.826816 | 2.203671e-54 | -8.615850e-47 |
| Msa0034810 | Msa0428920 | 0.831800 | 1.358924e-55 | -8.615850e-47 |
| Msa0034810 | Msa0430260 | 0.809346 | 1.979976e-50 | -8.615850e-47 |
| Msa0034810 | Msa0436910 | 0.882797 | 7.702684e-71 | -8.615850e-47 |
| Msa0034810 | Msa0462070 | 0.801803 | 7.578023e-49 | -8.615850e-47 |
| Msa0034810 | Msa0464680 | 0.826724 | 2.318264e-54 | -8.615850e-47 |
| Msa0034810 | Msa0465400 | 0.828056 | 1.111637e-54 | -8.615850e-47 |
| Msa0034810 | Msa0471670 | 0.817479 | 3.227693e-52 | -8.615850e-47 |
| Msa0034810 | Msa0474730 | 0.828546 | 8.465657e-55 | -8.615850e-47 |
| Msa0034810 | Msa0483100 | 0.807512 | 4.875590e-50 | -8.615850e-47 |
| Msa0034810 | Msa0484650 | 0.806320 | 8.711663e-50 | -8.615850e-47 |
| Msa0034810 | Msa0519750 | 0.804573 | 2.024301e-49 | -8.615850e-47 |
| Msa0034810 | Msa0519830 | 0.816539 | 5.250432e-52 | -8.615850e-47 |
| Msa0034810 | Msa0528570 | 0.800136 | 1.660294e-48 | -8.615850e-47 |
| Msa0034810 | Msa0529890 | 0.807984 | 3.869331e-50 | -8.615850e-47 |
| Msa0034810 | Msa0530780 | 0.809181 | 2.148123e-50 | -8.615850e-47 |
| Msa0034810 | Msa0531180 | 0.805915 | 1.060084e-49 | -8.615850e-47 |
| Msa0034810 | Msa0534720 | 0.807510 | 4.878781e-50 | -8.615850e-47 |
| Msa0034810 | Msa0557460 | 0.811472 | 6.881240e-51 | -8.615850e-47 |
| Msa0034810 | Msa0574050 | 0.812031 | 5.201836e-51 | -8.615850e-47 |
| Msa0034810 | Msa0580370 | 0.851089 | 1.113615e-60 | -8.615850e-47 |
| Msa0034810 | Msa0585560 | 0.800980 | 1.117237e-48 | -8.615850e-47 |
| Msa0034810 | Msa0597790 | 0.811358 | 7.287063e-51 | -8.615850e-47 |
| Msa0034810 | Msa0600930 | 0.800457 | 1.428101e-48 | -8.615850e-47 |
| Msa0034810 | Msa0611210 | 0.832354 | 9.917192e-56 | -8.615850e-47 |
| Msa0034810 | Msa0616070 | 0.809648 | 1.705400e-50 | -8.615850e-47 |
| Msa0034810 | Msa0625720 | 0.806694 | 7.262523e-50 | -8.615850e-47 |
| Msa0034810 | Msa0626450 | 0.814066 | 1.861305e-51 | -8.615850e-47 |
| Msa0034810 | Msa0626490 | 0.808310 | 3.297678e-50 | -8.615850e-47 |
| Msa0034810 | Msa0651550 | 0.834626 | 2.688697e-56 | -8.615850e-47 |
| Msa0034810 | Msa0662240 | 0.803424 | 3.508559e-49 | -8.615850e-47 |
| Msa0034810 | Msa0664600 | 0.813515 | 2.461242e-51 | -8.615850e-47 |
| Msa0034810 | Msa0679870 | 0.800806 | 1.212353e-48 | -8.615850e-47 |
| Msa0034810 | Msa0697160 | 0.802763 | 4.806735e-49 | -8.615850e-47 |
| Msa0034810 | Msa0699490 | 0.819687 | 1.019006e-52 | -8.615850e-47 |
| Msa0034810 | Msa0701700 | 0.816113 | 6.537107e-52 | -8.615850e-47 |
| Msa0034810 | Msa0717890 | 0.834912 | 2.277521e-56 | -8.615850e-47 |
| Msa0034810 | Msa0721080 | 0.804172 | 2.454570e-49 | -8.615850e-47 |
| Msa0034810 | Msa0741220 | 0.829114 | 6.169105e-55 | -8.615850e-47 |
| Msa0034810 | Msa0741650 | 0.815123 | 1.086194e-51 | -8.615850e-47 |
| Msa0034810 | Msa0761670 | 0.803948 | 2.731579e-49 | -8.615850e-47 |
| Msa0034810 | Msa0778590 | 0.819496 | 1.126472e-52 | -8.615850e-47 |
| Msa0034810 | Msa0795870 | 0.847453 | 1.145685e-59 | -8.615850e-47 |
| Msa0034810 | Msa0805330 | 0.810076 | 1.379815e-50 | -8.615850e-47 |
| Msa0034810 | Msa0822730 | 0.801006 | 1.103641e-48 | -8.615850e-47 |
| Msa0034810 | Msa0829300 | 0.865179 | 7.122237e-65 | -8.615850e-47 |
| Msa0034810 | Msa0829330 | 0.861313 | 1.119775e-63 | -8.615850e-47 |
| Msa0034810 | Msa0833650 | 0.855741 | 5.147710e-62 | -8.615850e-47 |
| Msa0034810 | Msa0835490 | 0.815004 | 1.154216e-51 | -8.615850e-47 |
| Msa0034810 | Msa0861850 | 0.840343 | 9.206798e-58 | -8.615850e-47 |
| Msa0034810 | Msa0866520 | 0.811304 | 7.486636e-51 | -8.615850e-47 |
| Msa0034810 | Msa0894790 | 0.830590 | 2.695365e-55 | -8.615850e-47 |
| Msa0034810 | Msa0898750 | 0.811268 | 7.621137e-51 | -8.615850e-47 |
| Msa0034810 | Msa0935820 | 0.809098 | 2.238487e-50 | -8.615850e-47 |
| Msa0034810 | Msa0945630 | 0.812589 | 3.928620e-51 | -8.615850e-47 |
| Msa0034810 | Msa0964310 | 0.827701 | 1.352533e-54 | -8.615850e-47 |
| Msa0034810 | Msa0967870 | 0.854321 | 1.330179e-61 | -8.615850e-47 |
| Msa0034810 | Msa1004840 | 0.813303 | 2.740315e-51 | -8.615850e-47 |
| Msa0034810 | Msa1012080 | 0.804263 | 2.349850e-49 | -8.615850e-47 |
| Msa0034810 | Msa1019430 | 0.818781 | 1.638266e-52 | -8.615850e-47 |
| Msa0034810 | Msa1019470 | 0.840085 | 1.075145e-57 | -8.615850e-47 |
| Msa0034810 | Msa1028100 | 0.818557 | 1.842070e-52 | -8.615850e-47 |
| Msa0034810 | Msa1044680 | 0.803139 | 4.020320e-49 | -8.615850e-47 |
| Msa0034810 | Msa1050340 | 0.803455 | 3.457548e-49 | -8.615850e-47 |
| Msa0034810 | Msa1101090 | 0.800341 | 1.508477e-48 | -8.615850e-47 |
| Msa0034810 | Msa1124950 | 0.806114 | 9.623871e-50 | -8.615850e-47 |
| Msa0034810 | Msa1132840 | 0.854000 | 1.647108e-61 | -8.615850e-47 |
| Msa0034810 | Msa1155170 | -0.823304 | 1.488533e-53 | -8.615850e-47 |
| Msa0034810 | Msa1186020 | 0.823107 | 1.655053e-53 | -8.615850e-47 |
| Msa0034810 | Msa1193170 | 0.805463 | 1.318652e-49 | -8.615850e-47 |
| Msa0034810 | Msa1205280 | 0.822482 | 2.314062e-53 | -8.615850e-47 |
| Msa0034810 | Msa1208950 | 0.806835 | 6.781906e-50 | -8.615850e-47 |
| Msa0034810 | Msa1225860 | -0.807588 | 4.698442e-50 | -8.615850e-47 |
| Msa0034810 | Msa1228200 | 0.855425 | 6.363309e-62 | -8.615850e-47 |
| Msa0034810 | Msa1232700 | 0.802573 | 5.261564e-49 | -8.615850e-47 |
| Msa0034810 | Msa1239920 | 0.804162 | 2.466328e-49 | -8.615850e-47 |
| Msa0034810 | Msa1243490 | 0.812050 | 5.153442e-51 | -8.615850e-47 |
| Msa0034810 | Msa1263490 | 0.815072 | 1.114962e-51 | -8.615850e-47 |
| Msa0034810 | Msa1265650 | 0.885208 | 9.913134e-72 | -8.615850e-47 |
| Msa0034810 | Msa1267770 | 0.805010 | 1.640650e-49 | -8.615850e-47 |
| Msa0034810 | Msa1271270 | 0.827171 | 1.812751e-54 | -8.615850e-47 |
| Msa0034810 | Msa1277220 | 0.825347 | 4.926623e-54 | -8.615850e-47 |
| Msa0034810 | Msa1297230 | 0.853547 | 2.223157e-61 | -8.615850e-47 |
| Msa0034810 | Msa1303560 | 0.873533 | 1.365922e-67 | -8.615850e-47 |
| Msa0034810 | Msa1303650 | 0.875001 | 4.346555e-68 | -8.615850e-47 |
| Msa0034810 | Msa1307560 | 0.807761 | 4.317075e-50 | -8.615850e-47 |
| Msa0034810 | Msa1313280 | 0.815096 | 1.101339e-51 | -8.615850e-47 |
| Msa0034810 | Msa1314650 | 0.838671 | 2.503702e-57 | -8.615850e-47 |
| Msa0034810 | Msa1320670 | 0.804841 | 1.780073e-49 | -8.615850e-47 |
| Msa0034810 | Msa1329980 | 0.829392 | 5.281574e-55 | -8.615850e-47 |
| Msa0034810 | Msa1333480 | 0.830389 | 3.018881e-55 | -8.615850e-47 |
| Msa0034810 | Msa1343430 | 0.852067 | 5.887895e-61 | -8.615850e-47 |
| Msa0034810 | Msa1372040 | 0.837509 | 4.983639e-57 | -8.615850e-47 |
| Msa0034810 | Msa1387620 | 0.818516 | 1.881792e-52 | -8.615850e-47 |
| Msa0034810 | Msa1392880 | 0.814212 | 1.728806e-51 | -8.615850e-47 |
| Msa0034810 | Msa1397400 | 0.809692 | 1.669124e-50 | -8.615850e-47 |
| Msa0034810 | Msa1414640 | 0.817610 | 3.016542e-52 | -8.615850e-47 |
| Msa0034810 | Msa1425880 | 0.822099 | 2.839414e-53 | -8.615850e-47 |
| Msa0034810 | Msa1433810 | 0.833761 | 4.428706e-56 | -8.615850e-47 |
| Msa0034810 | Msa1437930 | 0.800734 | 1.254255e-48 | -8.615850e-47 |
| Msa0034810 | Msa1440310 | 0.800803 | 1.214144e-48 | -8.615850e-47 |
| Msa0034810 | Msa1440960 | 0.808222 | 3.443962e-50 | -8.615850e-47 |
| Msa0034810 | Msa1449480 | 0.809739 | 1.630383e-50 | -8.615850e-47 |
| Msa0034810 | Msa1450100 | 0.818656 | 1.749571e-52 | -8.615850e-47 |
| Msa0034810 | Msa1454140 | 0.813549 | 2.419090e-51 | -8.615850e-47 |
| Msa0034810 | Msa1466920 | 0.814840 | 1.255089e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034810 | MtrunA17_Chr1g0197121 | 96.820 | 849 | 25 | 2 | 1 | 847 | 1 | 849 | 0.0 | 1689 |
| Msa0034810 | MtrunA17_Chr1g0177421 | 47.575 | 866 | 374 | 23 | 1 | 847 | 1 | 805 | 0.0 | 651 |
| Msa0034810 | MtrunA17_Chr2g0298801 | 34.487 | 751 | 382 | 25 | 1 | 694 | 1 | 698 | 4.25e-103 | 342 |
| Msa0034810 | MtrunA17_Chr4g0073021 | 30.920 | 870 | 458 | 33 | 1 | 784 | 1 | 813 | 2.08e-93 | 316 |
| Msa0034810 | MtrunA17_Chr4g0071701 | 63.068 | 176 | 50 | 5 | 1 | 167 | 1 | 170 | 7.61e-54 | 201 |
| Msa0034810 | MtrunA17_Chr3g0105051 | 26.545 | 874 | 505 | 31 | 11 | 787 | 10 | 843 | 4.12e-49 | 188 |
| Msa0034810 | MtrunA17_Chr5g0430201 | 25.196 | 893 | 493 | 33 | 11 | 784 | 10 | 846 | 3.20e-38 | 154 |
| Msa0034810 | MtrunA17_Chr3g0113631 | 27.664 | 488 | 272 | 19 | 11 | 457 | 10 | 457 | 1.37e-26 | 117 |
| Msa0034810 | MtrunA17_Chr4g0061371 | 21.492 | 791 | 506 | 31 | 24 | 784 | 17 | 722 | 4.19e-20 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034810 | AT3G52490.1 | 45.655 | 863 | 398 | 23 | 1 | 845 | 1 | 810 | 0.0 | 631 |
| Msa0034810 | AT5G57710.1 | 31.958 | 848 | 429 | 31 | 1 | 784 | 1 | 764 | 3.70e-97 | 326 |
| Msa0034810 | AT5G57130.1 | 37.415 | 588 | 252 | 18 | 1 | 490 | 1 | 570 | 3.57e-89 | 305 |
| Msa0034810 | AT4G29920.2 | 36.315 | 559 | 274 | 16 | 1 | 495 | 1 | 541 | 5.00e-89 | 304 |
| Msa0034810 | AT4G29920.1 | 36.331 | 556 | 275 | 16 | 1 | 495 | 1 | 538 | 8.40e-89 | 303 |
| Msa0034810 | AT4G30350.1 | 31.152 | 825 | 425 | 28 | 1 | 786 | 1 | 721 | 6.97e-84 | 288 |
| Msa0034810 | AT2G29970.1 | 26.322 | 832 | 491 | 26 | 11 | 781 | 10 | 780 | 4.95e-56 | 209 |
| Msa0034810 | AT1G07200.2 | 25.687 | 837 | 483 | 28 | 11 | 784 | 10 | 770 | 3.54e-48 | 185 |
| Msa0034810 | AT2G40130.1 | 31.234 | 397 | 224 | 13 | 11 | 382 | 10 | 382 | 3.69e-35 | 144 |
| Msa0034810 | AT2G40130.2 | 31.234 | 397 | 224 | 13 | 11 | 382 | 10 | 382 | 4.12e-35 | 144 |
| Msa0034810 | AT1G74310.1 | 26.129 | 310 | 194 | 11 | 11 | 313 | 4 | 285 | 4.86e-16 | 83.6 |
| Msa0034810 | AT1G74310.2 | 26.129 | 310 | 194 | 11 | 11 | 313 | 4 | 285 | 5.19e-16 | 83.2 |
Find 141 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCTATATATGTTAAATT+TGG | 0.080267 | 1_1:-62801281 | Msa0034810:three_prime_UTR |
| ACCCTTCCCTAGAAACTATT+TGG | 0.153510 | 1_1:-62803182 | Msa0034810:CDS |
| AGAGGGGTTATTCTTTATTT+AGG | 0.203554 | 1_1:-62803387 | Msa0034810:CDS |
| CCAAATCTCACTCAAATAAT+TGG | 0.227091 | 1_1:+62801056 | None:intergenic |
| TTATTCAATGACTTGACTTT+TGG | 0.237281 | 1_1:-62802948 | Msa0034810:CDS |
| TCTCGATCGTTCCGCGTCTT+TGG | 0.250193 | 1_1:+62803943 | None:intergenic |
| AGGCTTAAGGCTAAGTTCTT+TGG | 0.260826 | 1_1:+62803716 | None:intergenic |
| TCATGATCTTGAAAGAATAT+TGG | 0.271337 | 1_1:+62804303 | None:intergenic |
| GAGTGGTAGATTATGGCTTA+TGG | 0.282735 | 1_1:-62803247 | Msa0034810:CDS |
| TCCAACAAAGCCAACTAAAT+TGG | 0.291498 | 1_1:-62802278 | Msa0034810:CDS |
| TCCTTCACTTTCCAATGCTT+TGG | 0.297130 | 1_1:-62803994 | Msa0034810:CDS |
| TATAATAACTCACACTCTTT+TGG | 0.298041 | 1_1:+62802228 | None:intergenic |
| AAGCCTTGTGAAAAGCTATA+TGG | 0.299255 | 1_1:-62803412 | Msa0034810:CDS |
| CTTGTCAGGGAGGTAAATTT+TGG | 0.301446 | 1_1:+62804431 | None:intergenic |
| GTTCTATATATGTTAAATTT+GGG | 0.303820 | 1_1:-62801280 | Msa0034810:three_prime_UTR |
| TCACTTGAAGAAGCTGAGTT+TGG | 0.312758 | 1_1:+62802096 | None:intergenic |
| GAAGCTCCCAAATAGTTTCT+AGG | 0.313524 | 1_1:+62803175 | None:intergenic |
| TGAAATGGTTGTTTGAGTTT+TGG | 0.332695 | 1_1:-62803359 | Msa0034810:CDS |
| TTTGACAAAAGATCTGGTTT+TGG | 0.333075 | 1_1:+62802132 | None:intergenic |
| TGTAACAACTTTATGACAAT+TGG | 0.336252 | 1_1:-62801790 | Msa0034810:CDS |
| CTATTGTTCTGTTGAGCATA+TGG | 0.340911 | 1_1:-62803307 | Msa0034810:CDS |
| CTGCCAACAGGAATTGTAAA+AGG | 0.345389 | 1_1:+62803150 | None:intergenic |
| GCTGAGTTTGGACTTGAGTT+AGG | 0.348418 | 1_1:+62802108 | None:intergenic |
| TGTTGAGTGAATTAGTAAAA+AGG | 0.353427 | 1_1:-62803623 | Msa0034810:CDS |
| AGTAGAGTTATGAGAGAAGC+TGG | 0.362568 | 1_1:-62803840 | Msa0034810:CDS |
| GCCAATTTAGTTGGCTTTGT+TGG | 0.372056 | 1_1:+62802277 | None:intergenic |
| TCATTGTTAACACAATCTAT+AGG | 0.381114 | 1_1:+62803660 | None:intergenic |
| TTTATTTAGGTGATTTGAAA+TGG | 0.382295 | 1_1:-62803374 | Msa0034810:CDS |
| TTCCTTTGAGATATTCTCTC+TGG | 0.389830 | 1_1:+62801837 | None:intergenic |
| TCAAGCTAAGGAGAGAAGTA+TGG | 0.390308 | 1_1:-62802973 | Msa0034810:CDS |
| GCCATGCTTGCAACTTCAAC+AGG | 0.392420 | 1_1:-62804155 | Msa0034810:CDS |
| AGTTGATCACTTTACTCAAA+AGG | 0.394813 | 1_1:-62801605 | Msa0034810:CDS |
| AGTGGTAGATTATGGCTTAT+GGG | 0.396440 | 1_1:-62803246 | Msa0034810:CDS |
| TGCAGCTTTCAAACGTGCTC+AGG | 0.397418 | 1_1:-62803970 | Msa0034810:CDS |
| AAGTAATCTAAACCTCTCTT+TGG | 0.399086 | 1_1:-62801410 | Msa0034810:CDS |
| AGCACTTATTTGCAAAGGTT+TGG | 0.400652 | 1_1:-62801682 | Msa0034810:CDS |
| TTGAGGAATCATCATTTCCT+AGG | 0.403714 | 1_1:+62801749 | None:intergenic |
| TTAAGGATCTCTGCAAGAAA+TGG | 0.403868 | 1_1:-62802422 | Msa0034810:CDS |
| TCCTCATAGAGTGTTCTTCA+TGG | 0.406650 | 1_1:-62801641 | Msa0034810:CDS |
| AAATTATAGGCCAATTTAGT+TGG | 0.410863 | 1_1:+62802268 | None:intergenic |
| GTTAACACAATCTATAGGTT+TGG | 0.415012 | 1_1:+62803665 | None:intergenic |
| TTTGTTGAAGAAACTTCAAT+TGG | 0.417218 | 1_1:+62803768 | None:intergenic |
| CCCTTCCCTAGAAACTATTT+GGG | 0.418380 | 1_1:-62803181 | Msa0034810:CDS |
| ATAGGAAAATGCAAGACTTA+AGG | 0.420370 | 1_1:-62802439 | Msa0034810:intron |
| ACAAAGGCTACTAGTTGGTT+TGG | 0.420923 | 1_1:+62804352 | None:intergenic |
| GCCTAAGTTTGAACTTTGAC+AGG | 0.423851 | 1_1:-62803122 | Msa0034810:intron |
| AAGCCTCAAGTTCTTAGCCT+TGG | 0.424000 | 1_1:-62803699 | Msa0034810:CDS |
| TTAGGATTTGACAAAAGATC+TGG | 0.427273 | 1_1:+62802126 | None:intergenic |
| CCTCAAGTTCTTAGCCTTGG+TGG | 0.431448 | 1_1:-62803696 | Msa0034810:CDS |
| TCAAGTGAGGAAAATGAAGT+TGG | 0.432178 | 1_1:+62802315 | None:intergenic |
| GGCTAAGAACTTGAGGCTTA+AGG | 0.443449 | 1_1:+62803703 | None:intergenic |
| AAAAGAAACACTGTTATTGT+AGG | 0.444630 | 1_1:-62803600 | Msa0034810:CDS |
| AAGTTACACAGTGGAAGATC+AGG | 0.449020 | 1_1:-62802775 | Msa0034810:intron |
| TATAATTTCTGAACAAGAAA+AGG | 0.450081 | 1_1:-62802253 | Msa0034810:CDS |
| TTTGGAGATAAAGCAGGAGT+TGG | 0.452290 | 1_1:-62802930 | Msa0034810:CDS |
| GAAAAGACCAAGAGATGAGT+TGG | 0.452465 | 1_1:-62801707 | Msa0034810:CDS |
| GTGAAAAGCTATATGGGAAG+AGG | 0.452953 | 1_1:-62803405 | Msa0034810:CDS |
| CTTAGGCTTAAGCTGCCAAC+AGG | 0.452987 | 1_1:+62803138 | None:intergenic |
| GTGATGGAAAGGTTTGAGAT+AGG | 0.459316 | 1_1:-62803540 | Msa0034810:CDS |
| CAAGATTCTCTGTGATGCCT+TGG | 0.460963 | 1_1:-62802016 | Msa0034810:CDS |
| TGAATCATTTCTTTATGTTG+TGG | 0.463114 | 1_1:+62801982 | None:intergenic |
| GGAAGTTGAAAAGAAATTTG+TGG | 0.463470 | 1_1:-62803442 | Msa0034810:CDS |
| TTTCAGCTATAGTTATTAGT+GGG | 0.463929 | 1_1:-62801208 | Msa0034810:three_prime_UTR |
| GATGATGATGATTGCTATGA+TGG | 0.465266 | 1_1:-62802189 | Msa0034810:CDS |
| TAAGGCTAAGTTCTTTGGAC+TGG | 0.466737 | 1_1:+62803721 | None:intergenic |
| GTTGATCACTTTACTCAAAA+GGG | 0.476491 | 1_1:-62801604 | Msa0034810:CDS |
| AGCCTTGTGAAAAGCTATAT+GGG | 0.482010 | 1_1:-62803411 | Msa0034810:CDS |
| TTCTGTTGAGCATATGGTAA+TGG | 0.487719 | 1_1:-62803301 | Msa0034810:CDS |
| AGCGGAACAGATTCACCATC+AGG | 0.489515 | 1_1:+62801544 | None:intergenic |
| AACATGGCTTCAAAATTGTA+AGG | 0.492394 | 1_1:-62802805 | Msa0034810:CDS |
| GAATATTGAGGACTTAATAG+TGG | 0.495946 | 1_1:+62804023 | None:intergenic |
| TCCTGTTGAAGTTGCAAGCA+TGG | 0.496549 | 1_1:+62804154 | None:intergenic |
| CTCATAACTCTACTAACACT+TGG | 0.499188 | 1_1:+62803849 | None:intergenic |
| ACCTGTCAAAGTTCAAACTT+AGG | 0.500140 | 1_1:+62803121 | None:intergenic |
| AGCATTATCATGATCTTCAA+TGG | 0.505808 | 1_1:+62801375 | None:intergenic |
| TGAGATAGGTAATGTTCCTA+TGG | 0.506308 | 1_1:-62803526 | Msa0034810:CDS |
| GTGGTGAGAGTGGTAGATTA+TGG | 0.507287 | 1_1:-62803254 | Msa0034810:CDS |
| AAAAGACCAAGAGATGAGTT+GGG | 0.510626 | 1_1:-62801706 | Msa0034810:CDS |
| GTGCTTCCCAACTCATCTCT+TGG | 0.513956 | 1_1:+62801700 | None:intergenic |
| ATATTCCTAAAACATATAAG+AGG | 0.515258 | 1_1:+62803474 | None:intergenic |
| AAAATCATAAGCAAGAAACT+TGG | 0.516183 | 1_1:-62801888 | Msa0034810:CDS |
| GAAAGCTGCAACCAAAGCAT+TGG | 0.516890 | 1_1:+62803983 | None:intergenic |
| TAATGCTGAGGGAGTAGCTA+AGG | 0.517190 | 1_1:-62803565 | Msa0034810:CDS |
| AGAAAACAAAGGCTACTAGT+TGG | 0.524805 | 1_1:+62804347 | None:intergenic |
| CCCAAATAGTTTCTAGGGAA+GGG | 0.525348 | 1_1:+62803181 | None:intergenic |
| TTTGTGTTGATGCAGGTAAA+CGG | 0.525462 | 1_1:+62804048 | None:intergenic |
| AAGCTCCCAAATAGTTTCTA+GGG | 0.525655 | 1_1:+62803176 | None:intergenic |
| ACTTTGATGATCCTCTATCA+TGG | 0.525748 | 1_1:+62801429 | None:intergenic |
| TAGCTAAGGGAGTGATGGAA+AGG | 0.526074 | 1_1:-62803551 | Msa0034810:CDS |
| TGAAAAGCTATATGGGAAGA+GGG | 0.530391 | 1_1:-62803404 | Msa0034810:CDS |
| GTGGTAGATTATGGCTTATG+GGG | 0.532642 | 1_1:-62803245 | Msa0034810:CDS |
| TCTTGTTTGTCAAGAATCGA+AGG | 0.535551 | 1_1:+62802369 | None:intergenic |
| CATCATGCGCTGAAAACAAA+GGG | 0.540396 | 1_1:-62801459 | Msa0034810:CDS |
| GAAAATGAAGTTGGTGATGA+AGG | 0.541235 | 1_1:+62802324 | None:intergenic |
| TCCCAAATAGTTTCTAGGGA+AGG | 0.541487 | 1_1:+62803180 | None:intergenic |
| ATTTACCTCCCTGACAAGAA+AGG | 0.546449 | 1_1:-62804426 | Msa0034810:five_prime_UTR |
| AGGGAAAGAGACCATGATAG+AGG | 0.549596 | 1_1:-62801440 | Msa0034810:CDS |
| AGCTTCTTCAAGTGAAGCAG+TGG | 0.550112 | 1_1:-62802088 | Msa0034810:CDS |
| TCCATGAAGAACACTCTATG+AGG | 0.550163 | 1_1:+62801640 | None:intergenic |
| TCAAGAGCTTTGCATTGAAG+AGG | 0.552190 | 1_1:+62804095 | None:intergenic |
| GCAGTTCAAGCTTGCCAACA+TGG | 0.553169 | 1_1:-62802821 | Msa0034810:CDS |
| TGTACATATCTTAACTCCAT+AGG | 0.560856 | 1_1:+62803510 | None:intergenic |
| TGGTGAATCTGTTCCGCTCA+AGG | 0.562981 | 1_1:-62801539 | Msa0034810:CDS |
| TCATCATGCGCTGAAAACAA+AGG | 0.563706 | 1_1:-62801460 | Msa0034810:CDS |
| TGGGAAGCACTTATTTGCAA+AGG | 0.564536 | 1_1:-62801687 | Msa0034810:CDS |
| TCTTCAAGTGAAGCAGTGGA+TGG | 0.565452 | 1_1:-62802084 | Msa0034810:CDS |
| TGAGGAATCATCATTTCCTA+GGG | 0.565890 | 1_1:+62801750 | None:intergenic |
| AGAGAGTGTTTCTAATGCTG+AGG | 0.567960 | 1_1:-62803577 | Msa0034810:CDS |
| GTTAGTGGAAGTGGTGAGAG+TGG | 0.569181 | 1_1:-62803264 | Msa0034810:CDS |
| CAAGAGCTTTGCATTGAAGA+GGG | 0.570256 | 1_1:+62804096 | None:intergenic |
| GTGAATCTAGCAACAAGAAG+AGG | 0.571262 | 1_1:-62804212 | Msa0034810:CDS |
| ATGAGCACTTTCTCTTCCCT+AGG | 0.572261 | 1_1:-62801766 | Msa0034810:CDS |
| AGTGGACTTTGTGTTGATGC+AGG | 0.576688 | 1_1:+62804041 | None:intergenic |
| GAAGGAGTGGTTGAATATTG+AGG | 0.578893 | 1_1:+62804011 | None:intergenic |
| ATCAAGAAAGCAATTGAATG+TGG | 0.579531 | 1_1:-62801580 | Msa0034810:CDS |
| GGGAGTAGCTAAGGGAGTGA+TGG | 0.580375 | 1_1:-62803556 | Msa0034810:CDS |
| TTGTGGAAACTTGTTCTCCA+AGG | 0.583160 | 1_1:+62801999 | None:intergenic |
| GAGAGTGTTTCTAATGCTGA+GGG | 0.596744 | 1_1:-62803576 | Msa0034810:CDS |
| ACCAAAGCATTGGAAAGTGA+AGG | 0.598141 | 1_1:+62803993 | None:intergenic |
| CCACCAAGGCTAAGAACTTG+AGG | 0.610990 | 1_1:+62803696 | None:intergenic |
| TTCAGCTATAGTTATTAGTG+GGG | 0.612891 | 1_1:-62801207 | Msa0034810:three_prime_UTR |
| CTTGTTTGTCAAGAATCGAA+GGG | 0.613568 | 1_1:+62802370 | None:intergenic |
| TATTCTTTCAAGATCATGAG+AGG | 0.617371 | 1_1:-62804299 | Msa0034810:exon |
| TTCACTACTGAAAATGACAA+TGG | 0.618443 | 1_1:+62801513 | None:intergenic |
| GATCATGATAATGCTGACAT+TGG | 0.618644 | 1_1:-62801367 | Msa0034810:CDS |
| AATGCTGAGGGAGTAGCTAA+GGG | 0.618726 | 1_1:-62803564 | Msa0034810:CDS |
| AGCCAGAGAGAATATCTCAA+AGG | 0.623199 | 1_1:-62801839 | Msa0034810:CDS |
| GAAAAGCTATATGGGAAGAG+GGG | 0.626232 | 1_1:-62803403 | Msa0034810:CDS |
| AGCATTGGAAAGTGAAGGAG+TGG | 0.626564 | 1_1:+62803998 | None:intergenic |
| TTATTATACACTGAAAGTGC+TGG | 0.631798 | 1_1:-62802213 | Msa0034810:CDS |
| AGAGAGAGAGTAGAAAACAA+AGG | 0.633989 | 1_1:+62804336 | None:intergenic |
| ATGGCACTAGCAACATGAAG+AGG | 0.635949 | 1_1:+62804173 | None:intergenic |
| ATGACAATGGCATCCTTGAG+CGG | 0.637211 | 1_1:+62801526 | None:intergenic |
| CTATATTCAGATCCAAAGAG+AGG | 0.642276 | 1_1:+62801398 | None:intergenic |
| TTGTGCCTTTCTTGTCAGGG+AGG | 0.643684 | 1_1:+62804421 | None:intergenic |
| TCTTTCAAGATCATGAGAGG+AGG | 0.660285 | 1_1:-62804296 | Msa0034810:exon |
| GGTACAATAAGAGCAAGATG+TGG | 0.689679 | 1_1:+62804373 | None:intergenic |
| GGAAGTATAACAATTCCTGA+TGG | 0.693696 | 1_1:-62801559 | Msa0034810:CDS |
| GGAAGAAAGAAGTTACACAG+TGG | 0.706086 | 1_1:-62802784 | Msa0034810:CDS |
| GCTCAGGCTCACCAAAGACG+CGG | 0.718198 | 1_1:-62803954 | Msa0034810:CDS |
| GTTTGGTGTATGAACCACCA+AGG | 0.726709 | 1_1:+62803682 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAACAAAATTACTTTAA+TGG | - | chr1_1:62802882-62802901 | Msa0034810:CDS | 10.0% |
| !!! | AATTAGTTTTAATTTGTAAT+AGG | - | chr1_1:62804213-62804232 | Msa0034810:CDS | 10.0% |
| !! | TAAATAATGTAAAACATAAG+AGG | + | chr1_1:62802531-62802550 | None:intergenic | 15.0% |
| !! | AAAGATAAGAAAATAGAAAA+AGG | + | chr1_1:62803059-62803078 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTTTATGTGAAAT+AGG | - | chr1_1:62803076-62803095 | Msa0034810:intron | 15.0% |
| !! | TGTTCTATATATGTTAAATT+TGG | - | chr1_1:62804252-62804271 | Msa0034810:CDS | 15.0% |
| !! | GTTCTATATATGTTAAATTT+GGG | - | chr1_1:62804253-62804272 | Msa0034810:CDS | 15.0% |
| !! | ATATTCCTAAAACATATAAG+AGG | + | chr1_1:62802062-62802081 | None:intergenic | 20.0% |
| !!! | TTTTAGGAATATTAGTAAAG+AGG | - | chr1_1:62802070-62802089 | Msa0034810:CDS | 20.0% |
| !! | TTTATTTAGGTGATTTGAAA+TGG | - | chr1_1:62802159-62802178 | Msa0034810:CDS | 20.0% |
| !! | AACTATATATATGCAAAAAC+AGG | - | chr1_1:62803029-62803048 | Msa0034810:intron | 20.0% |
| !!! | TTTTCTTGTTCAGAAATTAT+AGG | + | chr1_1:62803281-62803300 | None:intergenic | 20.0% |
| !! | TATAATTTCTGAACAAGAAA+AGG | - | chr1_1:62803280-62803299 | Msa0034810:CDS | 20.0% |
| ! | TCATGATCTTGAAAGAATAT+TGG | + | chr1_1:62801233-62801252 | None:intergenic | 25.0% |
| ! | TTTGTTGAAGAAACTTCAAT+TGG | + | chr1_1:62801768-62801787 | None:intergenic | 25.0% |
| ! | TCATTGTTAACACAATCTAT+AGG | + | chr1_1:62801876-62801895 | None:intergenic | 25.0% |
| ! | TGTTGAGTGAATTAGTAAAA+AGG | - | chr1_1:62801910-62801929 | Msa0034810:CDS | 25.0% |
| ! | AAAAGAAACACTGTTATTGT+AGG | - | chr1_1:62801933-62801952 | Msa0034810:CDS | 25.0% |
| !!! | GGTAATGGAGATTAAAAAAT+TGG | - | chr1_1:62802247-62802266 | Msa0034810:CDS | 25.0% |
| ! | GAGATTAAAAAATTGGTTAG+TGG | - | chr1_1:62802254-62802273 | Msa0034810:CDS | 25.0% |
| !!! | TTATAGTGATTTTCAAGCTA+AGG | - | chr1_1:62802548-62802567 | Msa0034810:intron | 25.0% |
| !! | TTATTCAATGACTTGACTTT+TGG | - | chr1_1:62802585-62802604 | Msa0034810:intron | 25.0% |
| !! | TTCAGTGTGAAATTTTTGTA+CGG | - | chr1_1:62802981-62803000 | Msa0034810:CDS | 25.0% |
| ! | AAATTATAGGCCAATTTAGT+TGG | + | chr1_1:62803268-62803287 | None:intergenic | 25.0% |
| !! | TATAATAACTCACACTCTTT+TGG | + | chr1_1:62803308-62803327 | None:intergenic | 25.0% |
| ! | TGAATCATTTCTTTATGTTG+TGG | + | chr1_1:62803554-62803573 | None:intergenic | 25.0% |
| ! | AAAATCATAAGCAAGAAACT+TGG | - | chr1_1:62803645-62803664 | Msa0034810:CDS | 25.0% |
| !!! | GAAACTTGGATATTTTTTCT+TGG | - | chr1_1:62803659-62803678 | Msa0034810:CDS | 25.0% |
| ! | TGTAACAACTTTATGACAAT+TGG | - | chr1_1:62803743-62803762 | Msa0034810:CDS | 25.0% |
| !! | TTTTCAGCTATAGTTATTAG+TGG | - | chr1_1:62804324-62804343 | Msa0034810:five_prime_UTR | 25.0% |
| ! | TTTCAGCTATAGTTATTAGT+GGG | - | chr1_1:62804325-62804344 | Msa0034810:five_prime_UTR | 25.0% |
| TATTCTTTCAAGATCATGAG+AGG | - | chr1_1:62801234-62801253 | Msa0034810:three_prime_UTR | 30.0% | |
| GAATATTGAGGACTTAATAG+TGG | + | chr1_1:62801513-62801532 | None:intergenic | 30.0% | |
| GTTAACACAATCTATAGGTT+TGG | + | chr1_1:62801871-62801890 | None:intergenic | 30.0% | |
| TGTACATATCTTAACTCCAT+AGG | + | chr1_1:62802026-62802045 | None:intergenic | 30.0% | |
| ! | GTCTTCCTCTTATATGTTTT+AGG | - | chr1_1:62802054-62802073 | Msa0034810:CDS | 30.0% |
| GGAAGTTGAAAAGAAATTTG+TGG | - | chr1_1:62802091-62802110 | Msa0034810:CDS | 30.0% | |
| ! | AGAGGGGTTATTCTTTATTT+AGG | - | chr1_1:62802146-62802165 | Msa0034810:CDS | 30.0% |
| !! | TGAAATGGTTGTTTGAGTTT+TGG | - | chr1_1:62802174-62802193 | Msa0034810:CDS | 30.0% |
| CAAGTTACTGTGAACAAAAA+AGG | - | chr1_1:62802198-62802217 | Msa0034810:CDS | 30.0% | |
| AAAAAATTGGTTAGTGGAAG+TGG | - | chr1_1:62802260-62802279 | Msa0034810:CDS | 30.0% | |
| !!! | TTACAATTTTGAAGCCATGT+TGG | + | chr1_1:62802729-62802748 | None:intergenic | 30.0% |
| AACATGGCTTCAAAATTGTA+AGG | - | chr1_1:62802728-62802747 | Msa0034810:intron | 30.0% | |
| AATAGTCTCATACACTTACT+TGG | - | chr1_1:62802791-62802810 | Msa0034810:CDS | 30.0% | |
| ATAGGAAAATGCAAGACTTA+AGG | - | chr1_1:62803094-62803113 | Msa0034810:intron | 30.0% | |
| !!! | GTTAGACTTTTTTTCAAGTG+AGG | + | chr1_1:62803234-62803253 | None:intergenic | 30.0% |
| ! | TTATTATACACTGAAAGTGC+TGG | - | chr1_1:62803320-62803339 | Msa0034810:CDS | 30.0% |
| !! | TTTGACAAAAGATCTGGTTT+TGG | + | chr1_1:62803404-62803423 | None:intergenic | 30.0% |
| TTAGGATTTGACAAAAGATC+TGG | + | chr1_1:62803410-62803429 | None:intergenic | 30.0% | |
| TCATTCCTGATCTACAAAAA+AGG | + | chr1_1:62803595-62803614 | None:intergenic | 30.0% | |
| !! | GAACTAGCTAAAGTTGTTTT+TGG | - | chr1_1:62803716-62803735 | Msa0034810:CDS | 30.0% |
| ! | TTTGGATTTTTCATCACTTG+AGG | + | chr1_1:62803804-62803823 | None:intergenic | 30.0% |
| CAAGTGATGAAAAATCCAAA+AGG | - | chr1_1:62803804-62803823 | Msa0034810:CDS | 30.0% | |
| AGTTGATCACTTTACTCAAA+AGG | - | chr1_1:62803928-62803947 | Msa0034810:CDS | 30.0% | |
| GTTGATCACTTTACTCAAAA+GGG | - | chr1_1:62803929-62803948 | Msa0034810:CDS | 30.0% | |
| ATCAAGAAAGCAATTGAATG+TGG | - | chr1_1:62803953-62803972 | Msa0034810:CDS | 30.0% | |
| TTCACTACTGAAAATGACAA+TGG | + | chr1_1:62804023-62804042 | None:intergenic | 30.0% | |
| AAGTAATCTAAACCTCTCTT+TGG | - | chr1_1:62804123-62804142 | Msa0034810:CDS | 30.0% | |
| AGCATTATCATGATCTTCAA+TGG | + | chr1_1:62804161-62804180 | None:intergenic | 30.0% | |
| CAAACAAGTAGAGCAAAAAA+AGG | + | chr1_1:62804303-62804322 | None:intergenic | 30.0% | |
| TTCAGCTATAGTTATTAGTG+GGG | - | chr1_1:62804326-62804345 | Msa0034810:five_prime_UTR | 30.0% | |
| !!! | ATGCATGTATTTTTCAAGCT+TGG | - | chr1_1:62804410-62804429 | Msa0034810:five_prime_UTR | 30.0% |
| !!! | ATGTATTTTTCAAGCTTGGA+TGG | - | chr1_1:62804414-62804433 | Msa0034810:five_prime_UTR | 30.0% |
| ! | ATTTTGTGCCTTTCTTGTCA+GGG | + | chr1_1:62801118-62801137 | None:intergenic | 35.0% |
| ! | AATTTTGTGCCTTTCTTGTC+AGG | + | chr1_1:62801119-62801138 | None:intergenic | 35.0% |
| AGAAAACAAAGGCTACTAGT+TGG | + | chr1_1:62801189-62801208 | None:intergenic | 35.0% | |
| AGAGAGAGAGTAGAAAACAA+AGG | + | chr1_1:62801200-62801219 | None:intergenic | 35.0% | |
| ! | TTTGTGTTGATGCAGGTAAA+CGG | + | chr1_1:62801488-62801507 | None:intergenic | 35.0% |
| CTCATAACTCTACTAACACT+TGG | + | chr1_1:62801687-62801706 | None:intergenic | 35.0% | |
| TGAGATAGGTAATGTTCCTA+TGG | - | chr1_1:62802007-62802026 | Msa0034810:CDS | 35.0% | |
| ! | AAGCCTTGTGAAAAGCTATA+TGG | - | chr1_1:62802121-62802140 | Msa0034810:CDS | 35.0% |
| ! | AGCCTTGTGAAAAGCTATAT+GGG | - | chr1_1:62802122-62802141 | Msa0034810:CDS | 35.0% |
| ! | TTCCCATATAGCTTTTCACA+AGG | + | chr1_1:62802127-62802146 | None:intergenic | 35.0% |
| TGAAAAGCTATATGGGAAGA+GGG | - | chr1_1:62802129-62802148 | Msa0034810:CDS | 35.0% | |
| CTATTGTTCTGTTGAGCATA+TGG | - | chr1_1:62802226-62802245 | Msa0034810:CDS | 35.0% | |
| TTCTGTTGAGCATATGGTAA+TGG | - | chr1_1:62802232-62802251 | Msa0034810:CDS | 35.0% | |
| AGTGGTAGATTATGGCTTAT+GGG | - | chr1_1:62802287-62802306 | Msa0034810:CDS | 35.0% | |
| AAGCTCCCAAATAGTTTCTA+GGG | + | chr1_1:62802360-62802379 | None:intergenic | 35.0% | |
| ! | CATCCTTTTACAATTCCTGT+TGG | - | chr1_1:62802380-62802399 | Msa0034810:CDS | 35.0% |
| ACCTGTCAAAGTTCAAACTT+AGG | + | chr1_1:62802415-62802434 | None:intergenic | 35.0% | |
| !! | TTGACTTTTGGAGATAAAGC+AGG | - | chr1_1:62802597-62802616 | Msa0034810:intron | 35.0% |
| TTAAGGATCTCTGCAAGAAA+TGG | - | chr1_1:62803111-62803130 | Msa0034810:intron | 35.0% | |
| CTTGTTTGTCAAGAATCGAA+GGG | + | chr1_1:62803166-62803185 | None:intergenic | 35.0% | |
| ! | TCTTGTTTGTCAAGAATCGA+AGG | + | chr1_1:62803167-62803186 | None:intergenic | 35.0% |
| !! | GAAAATGAAGTTGGTGATGA+AGG | + | chr1_1:62803212-62803231 | None:intergenic | 35.0% |
| TCAAGTGAGGAAAATGAAGT+TGG | + | chr1_1:62803221-62803240 | None:intergenic | 35.0% | |
| TCCAACAAAGCCAACTAAAT+TGG | - | chr1_1:62803255-62803274 | Msa0034810:CDS | 35.0% | |
| ! | GATGATGATGATTGCTATGA+TGG | - | chr1_1:62803344-62803363 | Msa0034810:CDS | 35.0% |
| !!! | GGTTTTGGAACATTTCTATG+TGG | + | chr1_1:62803389-62803408 | None:intergenic | 35.0% |
| !!! | ACTGTCCTTTTTTGTAGATC+AGG | - | chr1_1:62803587-62803606 | Msa0034810:CDS | 35.0% |
| AGATCAGGAATGAGAAAAAG+AGG | - | chr1_1:62803602-62803621 | Msa0034810:CDS | 35.0% | |
| GATCAGGAATGAGAAAAAGA+GGG | - | chr1_1:62803603-62803622 | Msa0034810:CDS | 35.0% | |
| !! | TTCCTTTGAGATATTCTCTC+TGG | + | chr1_1:62803699-62803718 | None:intergenic | 35.0% |
| TGAGGAATCATCATTTCCTA+GGG | + | chr1_1:62803786-62803805 | None:intergenic | 35.0% | |
| TTGAGGAATCATCATTTCCT+AGG | + | chr1_1:62803787-62803806 | None:intergenic | 35.0% | |
| !! | ATCTCTTGGTCTTTTCCTTT+TGG | + | chr1_1:62803822-62803841 | None:intergenic | 35.0% |
| AAAAGACCAAGAGATGAGTT+GGG | - | chr1_1:62803827-62803846 | Msa0034810:CDS | 35.0% | |
| AGCACTTATTTGCAAAGGTT+TGG | - | chr1_1:62803851-62803870 | Msa0034810:CDS | 35.0% | |
| ! | GGAAGTATAACAATTCCTGA+TGG | - | chr1_1:62803974-62803993 | Msa0034810:CDS | 35.0% |
| ! | ACTTTGATGATCCTCTATCA+TGG | + | chr1_1:62804107-62804126 | None:intergenic | 35.0% |
| CTATATTCAGATCCAAAGAG+AGG | + | chr1_1:62804138-62804157 | None:intergenic | 35.0% | |
| ! | GATCATGATAATGCTGACAT+TGG | - | chr1_1:62804166-62804185 | Msa0034810:CDS | 35.0% |
| ! | CTTGTCAGGGAGGTAAATTT+TGG | + | chr1_1:62801105-62801124 | None:intergenic | 40.0% |
| ATTTACCTCCCTGACAAGAA+AGG | - | chr1_1:62801107-62801126 | Msa0034810:three_prime_UTR | 40.0% | |
| GGTACAATAAGAGCAAGATG+TGG | + | chr1_1:62801163-62801182 | None:intergenic | 40.0% | |
| ACAAAGGCTACTAGTTGGTT+TGG | + | chr1_1:62801184-62801203 | None:intergenic | 40.0% | |
| TCTTTCAAGATCATGAGAGG+AGG | - | chr1_1:62801237-62801256 | Msa0034810:three_prime_UTR | 40.0% | |
| GTGAATCTAGCAACAAGAAG+AGG | - | chr1_1:62801321-62801340 | Msa0034810:exon | 40.0% | |
| CAAGAGCTTTGCATTGAAGA+GGG | + | chr1_1:62801440-62801459 | None:intergenic | 40.0% | |
| TCAAGAGCTTTGCATTGAAG+AGG | + | chr1_1:62801441-62801460 | None:intergenic | 40.0% | |
| GAAGGAGTGGTTGAATATTG+AGG | + | chr1_1:62801525-62801544 | None:intergenic | 40.0% | |
| TCCTTCACTTTCCAATGCTT+TGG | - | chr1_1:62801539-62801558 | Msa0034810:CDS | 40.0% | |
| !! | ACCAAAGCATTGGAAAGTGA+AGG | + | chr1_1:62801543-62801562 | None:intergenic | 40.0% |
| AGTAGAGTTATGAGAGAAGC+TGG | - | chr1_1:62801693-62801712 | Msa0034810:CDS | 40.0% | |
| TAAGGCTAAGTTCTTTGGAC+TGG | + | chr1_1:62801815-62801834 | None:intergenic | 40.0% | |
| AGGCTTAAGGCTAAGTTCTT+TGG | + | chr1_1:62801820-62801839 | None:intergenic | 40.0% | |
| !! | AGAGAGTGTTTCTAATGCTG+AGG | - | chr1_1:62801956-62801975 | Msa0034810:CDS | 40.0% |
| !! | GAGAGTGTTTCTAATGCTGA+GGG | - | chr1_1:62801957-62801976 | Msa0034810:CDS | 40.0% |
| ! | GTGATGGAAAGGTTTGAGAT+AGG | - | chr1_1:62801993-62802012 | Msa0034810:CDS | 40.0% |
| GTGAAAAGCTATATGGGAAG+AGG | - | chr1_1:62802128-62802147 | Msa0034810:CDS | 40.0% | |
| GAAAAGCTATATGGGAAGAG+GGG | - | chr1_1:62802130-62802149 | Msa0034810:CDS | 40.0% | |
| GAGTGGTAGATTATGGCTTA+TGG | - | chr1_1:62802286-62802305 | Msa0034810:CDS | 40.0% | |
| GTGGTAGATTATGGCTTATG+GGG | - | chr1_1:62802288-62802307 | Msa0034810:CDS | 40.0% | |
| ACCCTTCCCTAGAAACTATT+TGG | - | chr1_1:62802351-62802370 | Msa0034810:CDS | 40.0% | |
| ! | CCCAAATAGTTTCTAGGGAA+GGG | + | chr1_1:62802355-62802374 | None:intergenic | 40.0% |
| CCCTTCCCTAGAAACTATTT+GGG | - | chr1_1:62802352-62802371 | Msa0034810:CDS | 40.0% | |
| ! | TCCCAAATAGTTTCTAGGGA+AGG | + | chr1_1:62802356-62802375 | None:intergenic | 40.0% |
| GAAGCTCCCAAATAGTTTCT+AGG | + | chr1_1:62802361-62802380 | None:intergenic | 40.0% | |
| CTGCCAACAGGAATTGTAAA+AGG | + | chr1_1:62802386-62802405 | None:intergenic | 40.0% | |
| GCCTAAGTTTGAACTTTGAC+AGG | - | chr1_1:62802411-62802430 | Msa0034810:CDS | 40.0% | |
| TCAAGCTAAGGAGAGAAGTA+TGG | - | chr1_1:62802560-62802579 | Msa0034810:intron | 40.0% | |
| TTTGGAGATAAAGCAGGAGT+TGG | - | chr1_1:62802603-62802622 | Msa0034810:intron | 40.0% | |
| GGAAGAAAGAAGTTACACAG+TGG | - | chr1_1:62802749-62802768 | Msa0034810:intron | 40.0% | |
| AAGTTACACAGTGGAAGATC+AGG | - | chr1_1:62802758-62802777 | Msa0034810:intron | 40.0% | |
| AGTCGTAAGTTCGTAACTGT+TGG | + | chr1_1:62802959-62802978 | None:intergenic | 40.0% | |
| !! | GCCAATTTAGTTGGCTTTGT+TGG | + | chr1_1:62803259-62803278 | None:intergenic | 40.0% |
| TCACTTGAAGAAGCTGAGTT+TGG | + | chr1_1:62803440-62803459 | None:intergenic | 40.0% | |
| ! | TTGTGGAAACTTGTTCTCCA+AGG | + | chr1_1:62803537-62803556 | None:intergenic | 40.0% |
| AGCCAGAGAGAATATCTCAA+AGG | - | chr1_1:62803694-62803713 | Msa0034810:CDS | 40.0% | |
| GAAAAGACCAAGAGATGAGT+TGG | - | chr1_1:62803826-62803845 | Msa0034810:CDS | 40.0% | |
| !! | TGGGAAGCACTTATTTGCAA+AGG | - | chr1_1:62803846-62803865 | Msa0034810:CDS | 40.0% |
| ! | TCCTCATAGAGTGTTCTTCA+TGG | - | chr1_1:62803892-62803911 | Msa0034810:CDS | 40.0% |
| TCCATGAAGAACACTCTATG+AGG | + | chr1_1:62803896-62803915 | None:intergenic | 40.0% | |
| ! | TTTTCAGCGCATGATGATTG+TGG | + | chr1_1:62804070-62804089 | None:intergenic | 40.0% |
| TCATCATGCGCTGAAAACAA+AGG | - | chr1_1:62804073-62804092 | Msa0034810:CDS | 40.0% | |
| CATCATGCGCTGAAAACAAA+GGG | - | chr1_1:62804074-62804093 | Msa0034810:CDS | 40.0% | |
| !! | TTTTCAAGCTTGGATGGAGA+TGG | - | chr1_1:62804420-62804439 | Msa0034810:five_prime_UTR | 40.0% |
| ATGGCACTAGCAACATGAAG+AGG | + | chr1_1:62801363-62801382 | None:intergenic | 45.0% | |
| TCCTGTTGAAGTTGCAAGCA+TGG | + | chr1_1:62801382-62801401 | None:intergenic | 45.0% | |
| ! | AGTGGACTTTGTGTTGATGC+AGG | + | chr1_1:62801495-62801514 | None:intergenic | 45.0% |
| ! | AGCATTGGAAAGTGAAGGAG+TGG | + | chr1_1:62801538-62801557 | None:intergenic | 45.0% |
| GAAAGCTGCAACCAAAGCAT+TGG | + | chr1_1:62801553-62801572 | None:intergenic | 45.0% | |
| GGCTAAGAACTTGAGGCTTA+AGG | + | chr1_1:62801833-62801852 | None:intergenic | 45.0% | |
| AAGCCTCAAGTTCTTAGCCT+TGG | - | chr1_1:62801834-62801853 | Msa0034810:CDS | 45.0% | |
| !! | GTTTGGTGTATGAACCACCA+AGG | + | chr1_1:62801854-62801873 | None:intergenic | 45.0% |
| TAATGCTGAGGGAGTAGCTA+AGG | - | chr1_1:62801968-62801987 | Msa0034810:CDS | 45.0% | |
| AATGCTGAGGGAGTAGCTAA+GGG | - | chr1_1:62801969-62801988 | Msa0034810:CDS | 45.0% | |
| ! | TAGCTAAGGGAGTGATGGAA+AGG | - | chr1_1:62801982-62802001 | Msa0034810:CDS | 45.0% |
| GTGGTGAGAGTGGTAGATTA+TGG | - | chr1_1:62802279-62802298 | Msa0034810:CDS | 45.0% | |
| ! | GTCGACAGCGTAAAGCATTT+AGG | + | chr1_1:62802862-62802881 | None:intergenic | 45.0% |
| GCTGAGTTTGGACTTGAGTT+AGG | + | chr1_1:62803428-62803447 | None:intergenic | 45.0% | |
| AGCTTCTTCAAGTGAAGCAG+TGG | - | chr1_1:62803445-62803464 | Msa0034810:CDS | 45.0% | |
| TCTTCAAGTGAAGCAGTGGA+TGG | - | chr1_1:62803449-62803468 | Msa0034810:CDS | 45.0% | |
| CAAGATTCTCTGTGATGCCT+TGG | - | chr1_1:62803517-62803536 | Msa0034810:CDS | 45.0% | |
| ATGAGCACTTTCTCTTCCCT+AGG | - | chr1_1:62803767-62803786 | Msa0034810:CDS | 45.0% | |
| ATGACAATGGCATCCTTGAG+CGG | + | chr1_1:62804010-62804029 | None:intergenic | 45.0% | |
| AGGGAAAGAGACCATGATAG+AGG | - | chr1_1:62804093-62804112 | Msa0034810:CDS | 45.0% | |
| TTGTGCCTTTCTTGTCAGGG+AGG | + | chr1_1:62801115-62801134 | None:intergenic | 50.0% | |
| GCCATGCTTGCAACTTCAAC+AGG | - | chr1_1:62801378-62801397 | Msa0034810:CDS | 50.0% | |
| TGCAGCTTTCAAACGTGCTC+AGG | - | chr1_1:62801563-62801582 | Msa0034810:CDS | 50.0% | |
| CCACCAAGGCTAAGAACTTG+AGG | + | chr1_1:62801840-62801859 | None:intergenic | 50.0% | |
| !! | CCTCAAGTTCTTAGCCTTGG+TGG | - | chr1_1:62801837-62801856 | Msa0034810:CDS | 50.0% |
| GTTAGTGGAAGTGGTGAGAG+TGG | - | chr1_1:62802269-62802288 | Msa0034810:CDS | 50.0% | |
| CTTAGGCTTAAGCTGCCAAC+AGG | + | chr1_1:62802398-62802417 | None:intergenic | 50.0% | |
| GCAGTTCAAGCTTGCCAACA+TGG | - | chr1_1:62802712-62802731 | Msa0034810:intron | 50.0% | |
| GTGCTTCCCAACTCATCTCT+TGG | + | chr1_1:62803836-62803855 | None:intergenic | 50.0% | |
| AGCGGAACAGATTCACCATC+AGG | + | chr1_1:62803992-62804011 | None:intergenic | 50.0% | |
| TGGTGAATCTGTTCCGCTCA+AGG | - | chr1_1:62803994-62804013 | Msa0034810:CDS | 50.0% | |
| TCTCGATCGTTCCGCGTCTT+TGG | + | chr1_1:62801593-62801612 | None:intergenic | 55.0% | |
| GGGAGTAGCTAAGGGAGTGA+TGG | - | chr1_1:62801977-62801996 | Msa0034810:CDS | 55.0% | |
| GCTCAGGCTCACCAAAGACG+CGG | - | chr1_1:62801579-62801598 | Msa0034810:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 62801062 | 62804493 | 62801062 | ID=Msa0034810;Name=Msa0034810 |
| chr1_1 | mRNA | 62801062 | 62804493 | 62801062 | ID=Msa0034810-mRNA-1;Parent=Msa0034810;Name=Msa0034810-mRNA-1;_AED=0.00;_eAED=0.00;_QI=187|1|1|1|1|1|3|262|847 |
| chr1_1 | exon | 62801062 | 62802457 | 62801062 | ID=Msa0034810-mRNA-1:exon:19929;Parent=Msa0034810-mRNA-1 |
| chr1_1 | exon | 62802776 | 62803001 | 62802776 | ID=Msa0034810-mRNA-1:exon:19928;Parent=Msa0034810-mRNA-1 |
| chr1_1 | exon | 62803123 | 62804493 | 62803123 | ID=Msa0034810-mRNA-1:exon:19927;Parent=Msa0034810-mRNA-1 |
| chr1_1 | five_prime_UTR | 62804307 | 62804493 | 62804307 | ID=Msa0034810-mRNA-1:five_prime_utr;Parent=Msa0034810-mRNA-1 |
| chr1_1 | CDS | 62803123 | 62804306 | 62803123 | ID=Msa0034810-mRNA-1:cds;Parent=Msa0034810-mRNA-1 |
| chr1_1 | CDS | 62802776 | 62803001 | 62802776 | ID=Msa0034810-mRNA-1:cds;Parent=Msa0034810-mRNA-1 |
| chr1_1 | CDS | 62801324 | 62802457 | 62801324 | ID=Msa0034810-mRNA-1:cds;Parent=Msa0034810-mRNA-1 |
| chr1_1 | three_prime_UTR | 62801062 | 62801323 | 62801062 | ID=Msa0034810-mRNA-1:three_prime_utr;Parent=Msa0034810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
