Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124680 | sp|Q9SF36|PDP2_ARATH | 52.604 | 192 | 90 | 1 | 352 | 542 | 196 | 387 | 8.52e-59 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124680 | G7I2L8 | 94.567 | 994 | 43 | 3 | 1 | 985 | 3 | 994 | 0.0 | 1879 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022750 | Msa0124680 | -0.810265 | 1.255910e-50 | -8.615850e-47 |
| Msa0027390 | Msa0124680 | 0.804035 | 2.620789e-49 | -8.615850e-47 |
| Msa0054820 | Msa0124680 | 0.802011 | 6.868748e-49 | -8.615850e-47 |
| Msa0055070 | Msa0124680 | 0.819235 | 1.291802e-52 | -8.615850e-47 |
| Msa0076750 | Msa0124680 | 0.905147 | 5.837376e-80 | -8.615850e-47 |
| Msa0100160 | Msa0124680 | 0.804683 | 1.919975e-49 | -8.615850e-47 |
| Msa0101020 | Msa0124680 | 0.814031 | 1.894805e-51 | -8.615850e-47 |
| Msa0124680 | Msa0160670 | 0.804681 | 1.921864e-49 | -8.615850e-47 |
| Msa0124680 | Msa0165300 | 0.812573 | 3.961713e-51 | -8.615850e-47 |
| Msa0124680 | Msa0197810 | 0.803080 | 4.134414e-49 | -8.615850e-47 |
| Msa0124680 | Msa0227230 | 0.809642 | 1.710690e-50 | -8.615850e-47 |
| Msa0124680 | Msa0317740 | 0.802857 | 4.597143e-49 | -8.615850e-47 |
| Msa0124680 | Msa0392200 | 0.806749 | 7.072184e-50 | -8.615850e-47 |
| Msa0124680 | Msa0468800 | 0.806424 | 8.281992e-50 | -8.615850e-47 |
| Msa0124680 | Msa0687450 | 0.830521 | 2.802316e-55 | -8.615850e-47 |
| Msa0124680 | Msa0689760 | 0.803848 | 2.865324e-49 | -8.615850e-47 |
| Msa0124680 | Msa0691050 | 0.802011 | 6.868748e-49 | -8.615850e-47 |
| Msa0124680 | Msa0902710 | 0.801060 | 1.075973e-48 | -8.615850e-47 |
| Msa0124680 | Msa1010070 | 0.809728 | 1.639098e-50 | -8.615850e-47 |
| Msa0124680 | Msa1027990 | 0.812420 | 4.277515e-51 | -8.615850e-47 |
| Msa0124680 | Msa1158660 | 0.812396 | 4.329314e-51 | -8.615850e-47 |
| Msa0124680 | Msa1286550 | 0.808890 | 2.479605e-50 | -8.615850e-47 |
| Msa0124680 | Msa1364430 | 0.811204 | 7.870875e-51 | -8.615850e-47 |
| Msa0124680 | Msa1420250 | 0.801795 | 7.605341e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124680 | MtrunA17_Chr1g0185901 | 94.567 | 994 | 43 | 3 | 1 | 985 | 3 | 994 | 0.0 | 1879 |
| Msa0124680 | MtrunA17_Chr1g0170751 | 54.706 | 680 | 244 | 15 | 346 | 985 | 283 | 938 | 0.0 | 657 |
| Msa0124680 | MtrunA17_Chr4g0018601 | 50.000 | 374 | 160 | 10 | 304 | 660 | 255 | 618 | 1.20e-106 | 345 |
| Msa0124680 | MtrunA17_Chr2g0333291 | 32.339 | 637 | 330 | 17 | 353 | 956 | 258 | 826 | 1.84e-79 | 277 |
| Msa0124680 | MtrunA17_Chr2g0303331 | 43.885 | 417 | 194 | 13 | 553 | 959 | 286 | 672 | 9.49e-79 | 271 |
| Msa0124680 | MtrunA17_Chr1g0181651 | 47.162 | 229 | 100 | 4 | 350 | 576 | 315 | 524 | 4.31e-58 | 216 |
| Msa0124680 | MtrunA17_Chr1g0181651 | 50.538 | 93 | 43 | 1 | 867 | 956 | 810 | 902 | 2.62e-19 | 94.0 |
| Msa0124680 | MtrunA17_Chr2g0333801 | 46.358 | 151 | 60 | 1 | 353 | 503 | 7 | 136 | 5.09e-43 | 153 |
| Msa0124680 | MtrunA17_Chr6g0450151 | 37.500 | 184 | 112 | 3 | 353 | 535 | 272 | 453 | 4.58e-29 | 125 |
| Msa0124680 | MtrunA17_Chr6g0450071 | 37.500 | 184 | 112 | 3 | 353 | 535 | 212 | 393 | 1.50e-27 | 119 |
| Msa0124680 | MtrunA17_Chr7g0272631 | 33.708 | 178 | 115 | 3 | 353 | 527 | 87 | 264 | 2.44e-25 | 113 |
| Msa0124680 | MtrunA17_Chr1g0192031 | 33.862 | 189 | 122 | 3 | 342 | 527 | 62 | 250 | 2.05e-24 | 107 |
| Msa0124680 | MtrunA17_Chr1g0181641 | 43.902 | 82 | 44 | 1 | 876 | 957 | 35 | 114 | 1.56e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124680 | AT3G09670.2 | 52.604 | 192 | 90 | 1 | 352 | 542 | 196 | 387 | 8.66e-60 | 218 |
| Msa0124680 | AT3G09670.1 | 52.604 | 192 | 90 | 1 | 352 | 542 | 196 | 387 | 8.66e-60 | 218 |
| Msa0124680 | AT5G02950.1 | 48.148 | 189 | 97 | 1 | 345 | 532 | 87 | 275 | 1.27e-52 | 196 |
| Msa0124680 | AT5G02950.1 | 56.098 | 82 | 36 | 0 | 873 | 954 | 542 | 623 | 1.23e-19 | 94.7 |
| Msa0124680 | AT5G02950.2 | 48.148 | 189 | 97 | 1 | 345 | 532 | 87 | 275 | 1.27e-52 | 196 |
| Msa0124680 | AT5G02950.2 | 56.098 | 82 | 36 | 0 | 873 | 954 | 542 | 623 | 1.23e-19 | 94.7 |
| Msa0124680 | AT3G54760.2 | 34.877 | 324 | 162 | 8 | 656 | 972 | 472 | 753 | 5.05e-42 | 166 |
| Msa0124680 | AT3G54760.1 | 34.877 | 324 | 162 | 8 | 656 | 972 | 503 | 784 | 6.49e-42 | 166 |
| Msa0124680 | AT5G40340.1 | 41.209 | 182 | 101 | 6 | 353 | 531 | 125 | 303 | 3.23e-29 | 126 |
| Msa0124680 | AT5G40340.2 | 41.209 | 182 | 101 | 6 | 353 | 531 | 125 | 303 | 4.26e-29 | 125 |
| Msa0124680 | AT3G05430.2 | 40.179 | 112 | 67 | 0 | 353 | 464 | 133 | 244 | 1.69e-21 | 101 |
| Msa0124680 | AT3G05430.1 | 40.179 | 112 | 67 | 0 | 353 | 464 | 133 | 244 | 1.75e-21 | 101 |
| Msa0124680 | AT5G27650.1 | 33.333 | 183 | 109 | 4 | 353 | 527 | 171 | 348 | 4.40e-21 | 100 |
| Msa0124680 | AT3G27860.2 | 31.525 | 295 | 162 | 13 | 350 | 627 | 58 | 329 | 4.61e-19 | 93.2 |
| Msa0124680 | AT3G27860.1 | 31.525 | 295 | 162 | 13 | 350 | 627 | 58 | 329 | 4.61e-19 | 93.2 |
| Msa0124680 | AT3G48187.1 | 26.562 | 192 | 116 | 5 | 353 | 539 | 106 | 277 | 1.65e-12 | 72.4 |
Find 233 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGGAAAGTTGGTATTTC+TGG | 0.134890 | 1_3:+52550955 | Msa0124680:CDS |
| TGCTATTTGGTAGCATATTA+TGG | 0.149078 | 1_3:+52551549 | Msa0124680:CDS |
| AGCAATAGTCTTTCGTTTCT+TGG | 0.161677 | 1_3:-52552285 | None:intergenic |
| GTCAAAAGACGGGTCGAATT+TGG | 0.171080 | 1_3:+52551696 | Msa0124680:CDS |
| GCTAAACAGTTCAACATATT+TGG | 0.174863 | 1_3:+52553187 | Msa0124680:CDS |
| GGAGTTTCTTCTCTGATTTC+AGG | 0.181757 | 1_3:+52552666 | Msa0124680:CDS |
| ACAAAACAATCATTTAAAAT+TGG | 0.214750 | 1_3:+52552380 | Msa0124680:CDS |
| TTCTGAGTCTCCTCAAAATT+AGG | 0.233682 | 1_3:-52552533 | None:intergenic |
| GGACTTGGTAGTTGGGGTTT+TGG | 0.236358 | 1_3:+52550465 | Msa0124680:CDS |
| CCCTCTATGTTGAAATATTC+TGG | 0.237737 | 1_3:+52552443 | Msa0124680:CDS |
| GCTTGCATTCTACCGGTTAA+AGG | 0.242276 | 1_3:+52551944 | Msa0124680:CDS |
| TTTATCAGTATCATTAATTA+AGG | 0.246050 | 1_3:-52552024 | None:intergenic |
| TTCTGTGAATGATCTGGTTT+GGG | 0.252633 | 1_3:+52551437 | Msa0124680:CDS |
| TCTGTCTCAGATTCCTTTAA+AGG | 0.257461 | 1_3:-52553091 | None:intergenic |
| GGAGGAGGTAGATGAAATAT+TGG | 0.259770 | 1_3:+52550888 | Msa0124680:CDS |
| AAAGCCTCCAGTTGGAAAAT+TGG | 0.259834 | 1_3:-52551886 | None:intergenic |
| TATAGTTTCTTGAATGTTAT+AGG | 0.262506 | 1_3:+52552644 | Msa0124680:CDS |
| CTACAAAAGTTGGCACTAAA+AGG | 0.274187 | 1_3:+52552732 | Msa0124680:CDS |
| TCACAGGAAGAGAAGGAAAT+TGG | 0.277243 | 1_3:+52551150 | Msa0124680:CDS |
| TCAGACAAAGAGAAGGAAAT+TGG | 0.297811 | 1_3:+52551306 | Msa0124680:CDS |
| GCCGATGCGCAAGCTGCTTT+CGG | 0.300794 | 1_3:+52553160 | Msa0124680:CDS |
| TTCTTCTGCCTTTCACCCTT+GGG | 0.310129 | 1_3:-52552325 | None:intergenic |
| TTTCTTCTGCCTTTCACCCT+TGG | 0.316743 | 1_3:-52552326 | None:intergenic |
| TCATCAAAGTCAAATGTTTC+AGG | 0.317862 | 1_3:-52552779 | None:intergenic |
| ATCATTGTGGCCAGTGATCC+TGG | 0.318358 | 1_3:+52552695 | Msa0124680:CDS |
| AACATTTGACTTTGATGATC+TGG | 0.323353 | 1_3:+52552784 | Msa0124680:CDS |
| TGTTCCAGGAAACAGTATTT+TGG | 0.330526 | 1_3:+52552929 | Msa0124680:CDS |
| TCTGAGTCTCCTCAAAATTA+GGG | 0.332007 | 1_3:-52552532 | None:intergenic |
| GCTACCAAAATACTGTTTCC+TGG | 0.332567 | 1_3:-52552933 | None:intergenic |
| GATGACTGATGATGTTATTC+AGG | 0.335880 | 1_3:+52551239 | Msa0124680:CDS |
| ACCTCCACAATATTGTAATT+CGG | 0.343928 | 1_3:-52551982 | None:intergenic |
| TTCTCAAGTTGTTGGTTCAT+TGG | 0.347513 | 1_3:+52550783 | Msa0124680:CDS |
| ATTACAATATTGTGGAGGTT+TGG | 0.350069 | 1_3:+52551986 | Msa0124680:CDS |
| GCTATTTGGTAGCATATTAT+GGG | 0.350097 | 1_3:+52551550 | Msa0124680:CDS |
| CCTCCACAATATTGTAATTC+GGG | 0.351991 | 1_3:-52551981 | None:intergenic |
| ATCTTGTCATAAGTATCTTT+AGG | 0.354335 | 1_3:-52551738 | None:intergenic |
| TTATGACAAGATTAAACTTC+AGG | 0.357337 | 1_3:+52551749 | Msa0124680:CDS |
| TTTCTGTGAATGATCTGGTT+TGG | 0.357507 | 1_3:+52551436 | Msa0124680:CDS |
| GGTCTAAGCTGAAGTCCTTT+AGG | 0.367030 | 1_3:+52551598 | Msa0124680:CDS |
| ATAGTTTCTTGAATGTTATA+GGG | 0.367131 | 1_3:+52552645 | Msa0124680:CDS |
| CATGTCCCCATGAAGAGTTC+AGG | 0.376926 | 1_3:+52551390 | Msa0124680:CDS |
| TCAAAAGACGGGTCGAATTT+GGG | 0.377860 | 1_3:+52551697 | Msa0124680:CDS |
| AGGTTGAGGGATCTATGGTT+AGG | 0.385375 | 1_3:+52550428 | Msa0124680:CDS |
| TGAGAAGGAGGTAGTTGAGT+TGG | 0.387816 | 1_3:+52550621 | Msa0124680:CDS |
| CTGAGAAGGACTTGGTAGTT+GGG | 0.388392 | 1_3:+52550458 | Msa0124680:CDS |
| TATAGAGGTTGAGGGATCTA+TGG | 0.388781 | 1_3:+52550423 | Msa0124680:CDS |
| TGATGAGTGATGATGTTATT+CGG | 0.391524 | 1_3:+52551079 | Msa0124680:CDS |
| CGAGAATGAGGTAGTTGAGT+TGG | 0.391904 | 1_3:+52550816 | Msa0124680:CDS |
| ATAGATCCCTCAACCTCTAT+AGG | 0.393157 | 1_3:-52550421 | None:intergenic |
| CTTGCATTCTACCGGTTAAA+GGG | 0.397273 | 1_3:+52551945 | Msa0124680:CDS |
| TCCTCCTCCTATAGAGGTTG+AGG | 0.401389 | 1_3:+52550414 | Msa0124680:CDS |
| AAGTATTCCATAAGCTTCTC+AGG | 0.401659 | 1_3:-52551852 | None:intergenic |
| AAAGATGTGAATGTTGCTAT+TGG | 0.407198 | 1_3:+52550739 | Msa0124680:CDS |
| TAATCACTGTGGGTAGAATC+TGG | 0.412595 | 1_3:-52552215 | None:intergenic |
| AACTGGAGGCTTTGATCGAT+TGG | 0.414850 | 1_3:+52551896 | Msa0124680:CDS |
| GTTTAATGATGCCGAAGAAC+AGG | 0.418593 | 1_3:+52551338 | Msa0124680:CDS |
| GATGAGTGATGATGTTATTC+GGG | 0.418737 | 1_3:+52551080 | Msa0124680:CDS |
| AGGGTTGCTAGCCAACTTAC+TGG | 0.421445 | 1_3:+52552416 | Msa0124680:CDS |
| CTTGCGACGGGATTGGTTTG+TGG | 0.423101 | 1_3:-52552123 | None:intergenic |
| AGGAGGAGGAGGATTGTCTA+GGG | 0.427731 | 1_3:-52550398 | None:intergenic |
| AAGAAACTATAATCTCCCTT+TGG | 0.428080 | 1_3:-52552632 | None:intergenic |
| AAAATACTGTTTCCTGGAAC+AGG | 0.428323 | 1_3:-52552927 | None:intergenic |
| GAGGAGGAGGAGGATTGTCT+AGG | 0.428538 | 1_3:-52550399 | None:intergenic |
| AGTTAATGATGCCGATGAAC+AGG | 0.430862 | 1_3:+52551182 | Msa0124680:CDS |
| GGTTGAGGGATCTATGGTTA+GGG | 0.436877 | 1_3:+52550429 | Msa0124680:CDS |
| TTCGTTTCTTGGAAAGGATA+GGG | 0.437828 | 1_3:-52552274 | None:intergenic |
| AATGATCAAGATGCAATTCC+TGG | 0.437834 | 1_3:-52553288 | None:intergenic |
| TCAGACAAAGAGAAGGAAAT+CGG | 0.440506 | 1_3:+52550991 | Msa0124680:CDS |
| AGGACAGATATTTGATCCTT+CGG | 0.441893 | 1_3:+52551488 | Msa0124680:CDS |
| GAGAAGGAGGTAGTTGAGTT+GGG | 0.442262 | 1_3:+52550622 | Msa0124680:CDS |
| CATAAGCTTCTCAGGTGAAA+AGG | 0.450721 | 1_3:-52551844 | None:intergenic |
| GAAGGGGCGCGCTTATAGTC+TGG | 0.453060 | 1_3:-52552866 | None:intergenic |
| GATTCGACAAGAGCCAAGTT+TGG | 0.453596 | 1_3:+52551788 | Msa0124680:CDS |
| GAATCTGGATTCCCATTGGC+TGG | 0.453644 | 1_3:-52552200 | None:intergenic |
| GTTTACGCTTGCGACGGGAT+TGG | 0.454998 | 1_3:-52552130 | None:intergenic |
| TGAAGGTAAGAGTGAGAAGG+AGG | 0.456381 | 1_3:+52550609 | Msa0124680:CDS |
| GATTTCTTTCCCAGGATCAC+TGG | 0.460398 | 1_3:-52552705 | None:intergenic |
| TCCAGAATATTTCAACATAG+AGG | 0.462499 | 1_3:-52552444 | None:intergenic |
| CTACGTGTATAAACATGAAC+AGG | 0.463107 | 1_3:-52552902 | None:intergenic |
| AATGGTGATCAAACTGGAAC+CGG | 0.464649 | 1_3:+52552089 | Msa0124680:CDS |
| TTTGAAGATTCTCAAGTTGT+TGG | 0.468302 | 1_3:+52550775 | Msa0124680:CDS |
| GAGTCAGATGAAGGGAAAGT+TGG | 0.469831 | 1_3:+52551105 | Msa0124680:CDS |
| AAGTTCAAAACAAGTTCAGC+AGG | 0.470527 | 1_3:-52553007 | None:intergenic |
| AGCAAGAGTAACCCTTTAAC+CGG | 0.471478 | 1_3:-52551956 | None:intergenic |
| TCAGGAGATTCACCTATGGC+TGG | 0.473273 | 1_3:-52552761 | None:intergenic |
| ACTGAGAAGGACTTGGTAGT+TGG | 0.475703 | 1_3:+52550457 | Msa0124680:CDS |
| GAGAATGAGGTAGTTGAGTT+GGG | 0.475736 | 1_3:+52550817 | Msa0124680:CDS |
| ATTCAGGTTGAGTCAGATGA+AGG | 0.475737 | 1_3:+52551255 | Msa0124680:CDS |
| GAGGTAGTTGAGTTGGGTGG+TGG | 0.478840 | 1_3:+52550628 | Msa0124680:CDS |
| AGAAGCCATCCATGGTGGCC+AGG | 0.480090 | 1_3:+52551468 | Msa0124680:CDS |
| CTCAGCTGCTTGCATTCTAC+CGG | 0.481107 | 1_3:+52551937 | Msa0124680:CDS |
| TTCAGGTTGTTGAAAACTGT+GGG | 0.482036 | 1_3:+52551766 | Msa0124680:CDS |
| GAGTCGGATGGAGGGAAAGT+TGG | 0.483400 | 1_3:+52550946 | Msa0124680:CDS |
| TAGTCTTTCGTTTCTTGGAA+AGG | 0.484292 | 1_3:-52552280 | None:intergenic |
| ACCTCTATAGGAGGAGGAGG+AGG | 0.484482 | 1_3:-52550409 | None:intergenic |
| CAAGTTGTTGGTTCATTGGA+AGG | 0.484662 | 1_3:+52550787 | Msa0124680:CDS |
| TTCTCATCTATATAACCAGC+AGG | 0.485307 | 1_3:-52552980 | None:intergenic |
| GCAGAAGAAGAAGGAGGAGG+AGG | 0.486421 | 1_3:+52550873 | Msa0124680:CDS |
| GTTATTTAAGCTTGTTTCTG+AGG | 0.490022 | 1_3:-52553050 | None:intergenic |
| GAAATCTTACCTACAAAAGT+TGG | 0.497550 | 1_3:+52552722 | Msa0124680:CDS |
| CCTCCTCCTATAGAGGTTGA+GGG | 0.499202 | 1_3:+52550415 | Msa0124680:CDS |
| ATAAGAGAAATGTGACCTAA+AGG | 0.499413 | 1_3:-52551613 | None:intergenic |
| GGAACGTACGCGTGGAATGA+AGG | 0.499626 | 1_3:+52551576 | Msa0124680:CDS |
| ATACACGTAGGTCCTGTTCC+AGG | 0.500440 | 1_3:+52552915 | Msa0124680:CDS |
| ATTCGGGTTGAGTCAGATGA+AGG | 0.500442 | 1_3:+52551096 | Msa0124680:CDS |
| TGAGAAGATTGATGATTCAC+AGG | 0.500630 | 1_3:+52551134 | Msa0124680:CDS |
| TTTGATGGGTCAGTTGAGGA+GGG | 0.501151 | 1_3:+52550715 | Msa0124680:CDS |
| ATCAGTACGCTGACGTCCCA+AGG | 0.502539 | 1_3:+52552309 | Msa0124680:CDS |
| GATTCTGATTTGTGCATACA+AGG | 0.502676 | 1_3:+52550487 | Msa0124680:CDS |
| CTCCTCAAAATTAGGGGAGA+AGG | 0.503090 | 1_3:-52552525 | None:intergenic |
| TCTCTGATGGCAGATGGTAA+TGG | 0.503504 | 1_3:+52552473 | Msa0124680:CDS |
| GACCACATTAAGTTCAACAT+TGG | 0.504411 | 1_3:-52553311 | None:intergenic |
| GCCGAAAGCAGCTTGCGCAT+CGG | 0.506845 | 1_3:-52553161 | None:intergenic |
| ATTATGTTTACGCTTGCGAC+GGG | 0.508564 | 1_3:-52552135 | None:intergenic |
| GAAGCAACTTTGCATAAAGA+TGG | 0.511858 | 1_3:+52550655 | Msa0124680:CDS |
| GAGTGCTGTAGATTCTGCTT+TGG | 0.512585 | 1_3:+52551668 | Msa0124680:CDS |
| CGTAAACATAATCTAAAGGT+TGG | 0.517378 | 1_3:+52552146 | Msa0124680:CDS |
| ATGTCCCCATGAAGAGTTCA+GGG | 0.518410 | 1_3:+52551391 | Msa0124680:CDS |
| TTTGCTATCTTTACTTCAGT+GGG | 0.521231 | 1_3:+52552598 | Msa0124680:CDS |
| TTGGTAGCATATTATGGGGA+TGG | 0.521750 | 1_3:+52551555 | Msa0124680:CDS |
| TCTGTCCTGGCCACCATGGA+TGG | 0.523479 | 1_3:-52551473 | None:intergenic |
| TTTCGTTTCTTGGAAAGGAT+AGG | 0.527147 | 1_3:-52552275 | None:intergenic |
| ATTTGCTATCTTTACTTCAG+TGG | 0.528385 | 1_3:+52552597 | Msa0124680:CDS |
| GCAATGGCCTCATCATCATT+CGG | 0.528387 | 1_3:-52552239 | None:intergenic |
| AGGAAGCAAGCGGGCAAGAG+TGG | 0.530153 | 1_3:+52553123 | Msa0124680:CDS |
| ATGAGGTAGTTGAGTTGGGT+GGG | 0.530499 | 1_3:+52550821 | Msa0124680:CDS |
| TAATAAGTGACGATGTTACT+CGG | 0.531017 | 1_3:+52550920 | Msa0124680:CDS |
| GGTCTTACTATTCGAGCTGA+AGG | 0.531948 | 1_3:+52550580 | Msa0124680:CDS |
| TCAACTCTATGTACCAAACT+TGG | 0.533287 | 1_3:-52551801 | None:intergenic |
| GTTGCTATTGGAGGAACTGT+AGG | 0.533303 | 1_3:+52550751 | Msa0124680:CDS |
| GAACGTACGCGTGGAATGAA+GGG | 0.534286 | 1_3:+52551577 | Msa0124680:CDS |
| TTATTTAAGCTTGTTTCTGA+GGG | 0.535145 | 1_3:-52553049 | None:intergenic |
| TGAAGCAACTTCGAAAACAT+TGG | 0.535299 | 1_3:+52550846 | Msa0124680:CDS |
| TTGCATAAAGATGGTGTTTG+TGG | 0.535887 | 1_3:+52550664 | Msa0124680:CDS |
| TTTACTTCAGTGGGTAGCAC+AGG | 0.536694 | 1_3:+52552607 | Msa0124680:CDS |
| CAAGCGTAAACATAATCTAA+AGG | 0.537630 | 1_3:+52552142 | Msa0124680:CDS |
| TGATGATTCACAGGAAGAGA+AGG | 0.537658 | 1_3:+52551143 | Msa0124680:CDS |
| GAGTCAGATGAAGGGAAAGT+TGG | 0.538889 | 1_3:+52551264 | Msa0124680:CDS |
| GTAGGTAAGATTTCTTTCCC+AGG | 0.542544 | 1_3:-52552713 | None:intergenic |
| TGAGAAGGACTTGGTAGTTG+GGG | 0.543115 | 1_3:+52550459 | Msa0124680:CDS |
| AATGAGGTAGTTGAGTTGGG+TGG | 0.543283 | 1_3:+52550820 | Msa0124680:CDS |
| TGAGCAGAAGAAGAAGGAGG+AGG | 0.543585 | 1_3:+52550870 | Msa0124680:CDS |
| CACTCGGTGAGTAGTTAAGC+TGG | 0.544989 | 1_3:-52553228 | None:intergenic |
| TCAGGGAAAAGTCGTAGAGA+AGG | 0.545278 | 1_3:+52551408 | Msa0124680:CDS |
| GAAGGATCAAATATCTGTCC+TGG | 0.546699 | 1_3:-52551486 | None:intergenic |
| TCCTCAAAATTAGGGGAGAA+GGG | 0.547058 | 1_3:-52552524 | None:intergenic |
| CGATGTTACTCGGGTTGAGT+CGG | 0.551257 | 1_3:+52550930 | Msa0124680:CDS |
| CCCTCAACCTCTATAGGAGG+AGG | 0.551375 | 1_3:-52550415 | None:intergenic |
| GGATGATACTGAGAAGGACT+TGG | 0.552752 | 1_3:+52550450 | Msa0124680:CDS |
| TTGCTATTGGAGGAACTGTA+GGG | 0.554114 | 1_3:+52550752 | Msa0124680:CDS |
| GCTTGTTAGAACCAGCCAAT+GGG | 0.554154 | 1_3:+52552189 | Msa0124680:CDS |
| GGAAGGTAAGAGCGAGAATG+AGG | 0.554312 | 1_3:+52550804 | Msa0124680:CDS |
| TCTAGAGATGAAAACTCTGT+AGG | 0.554887 | 1_3:-52552572 | None:intergenic |
| TTCCAATGTTGAACTTAATG+TGG | 0.555710 | 1_3:+52553309 | Msa0124680:CDS |
| GGGTTGCTAGCCAACTTACT+GGG | 0.555983 | 1_3:+52552417 | Msa0124680:CDS |
| AAATTGGCGATTGTATCCGT+AGG | 0.556953 | 1_3:+52552396 | Msa0124680:CDS |
| TCTGAGACAGAAATTGATAG+AGG | 0.558240 | 1_3:+52553103 | Msa0124680:CDS |
| GAACAGGTAAAAGCATCAGC+TGG | 0.558343 | 1_3:+52551198 | Msa0124680:CDS |
| TCGTTTCTTGGAAAGGATAG+GGG | 0.562588 | 1_3:-52552273 | None:intergenic |
| CCAGAATATTTCAACATAGA+GGG | 0.564536 | 1_3:-52552443 | None:intergenic |
| GTTACTCGGGTTGAGTCGGA+TGG | 0.565075 | 1_3:+52550934 | Msa0124680:CDS |
| GAATGATCTGGTTTGGGGCA+AGG | 0.565852 | 1_3:+52551443 | Msa0124680:CDS |
| AAGACGGGTCGAATTTGGGC+TGG | 0.567552 | 1_3:+52551701 | Msa0124680:CDS |
| GCTGACGTCCCAAGGGTGAA+AGG | 0.569331 | 1_3:+52552317 | Msa0124680:CDS |
| TTTCAGGAATTCAATCATTG+TGG | 0.569656 | 1_3:+52552682 | Msa0124680:CDS |
| TAGAGGGCGACCCAGTAAGT+TGG | 0.571586 | 1_3:-52552427 | None:intergenic |
| GAACAGGCAAAAGCATCAGA+TGG | 0.571998 | 1_3:+52551039 | Msa0124680:CDS |
| GTGGGTAGCACAGGAACCAA+AGG | 0.573631 | 1_3:+52552616 | Msa0124680:CDS |
| CTTCAGGTTGTTGAAAACTG+TGG | 0.573927 | 1_3:+52551765 | Msa0124680:CDS |
| ATTGGATGAGCAGAAGAAGA+AGG | 0.575488 | 1_3:+52550864 | Msa0124680:CDS |
| TGTTTCAGGAGATTCACCTA+TGG | 0.576258 | 1_3:-52552765 | None:intergenic |
| GAACAGGTAAAAGCATCAGA+TGG | 0.576894 | 1_3:+52551354 | Msa0124680:CDS |
| TTCTGGAGACACTTCTCTGA+TGG | 0.577268 | 1_3:+52552460 | Msa0124680:CDS |
| TCATTGTGGCCAGTGATCCT+GGG | 0.577427 | 1_3:+52552696 | Msa0124680:CDS |
| GATGTGAATGTTGCTATTGG+AGG | 0.577509 | 1_3:+52550742 | Msa0124680:CDS |
| AATTGGCGATTGTATCCGTA+GGG | 0.579455 | 1_3:+52552397 | Msa0124680:CDS |
| TCAACCTCTATAGGAGGAGG+AGG | 0.585327 | 1_3:-52550412 | None:intergenic |
| AATCGATCAAAGCCTCCAGT+TGG | 0.585502 | 1_3:-52551894 | None:intergenic |
| TCCTTCGGATGCATCTGCGC+AGG | 0.588537 | 1_3:+52551503 | Msa0124680:CDS |
| CTTTGGATGAAGTCAAAAGA+CGG | 0.588987 | 1_3:+52551685 | Msa0124680:CDS |
| CTCGGGTTGAGTCGGATGGA+GGG | 0.591613 | 1_3:+52550938 | Msa0124680:CDS |
| AGCTTGTTAGAACCAGCCAA+TGG | 0.592127 | 1_3:+52552188 | Msa0124680:CDS |
| TGATGATTCAGACAAAGAGA+AGG | 0.592792 | 1_3:+52550984 | Msa0124680:CDS |
| GATCCCTCAACCTCTATAGG+AGG | 0.592821 | 1_3:-52550418 | None:intergenic |
| GATTGATTCAGACAAAGAGA+AGG | 0.593485 | 1_3:+52551299 | Msa0124680:CDS |
| ACTCGGGTTGAGTCGGATGG+AGG | 0.594408 | 1_3:+52550937 | Msa0124680:CDS |
| CCCGAATTACAATATTGTGG+AGG | 0.595704 | 1_3:+52551981 | Msa0124680:CDS |
| CAGGGAAAAGTCGTAGAGAA+GGG | 0.596276 | 1_3:+52551409 | Msa0124680:CDS |
| TGCTGAGCTGAATCATGATG+TGG | 0.597423 | 1_3:+52550522 | Msa0124680:CDS |
| TTTGGATGAAGTCAAAAGAC+GGG | 0.598056 | 1_3:+52551686 | Msa0124680:CDS |
| GGTAGAATCTGGATTCCCAT+TGG | 0.599521 | 1_3:-52552204 | None:intergenic |
| AATAAGTGACGATGTTACTC+GGG | 0.599832 | 1_3:+52550921 | Msa0124680:CDS |
| GACACTTCTCTGATGGCAGA+TGG | 0.600480 | 1_3:+52552467 | Msa0124680:CDS |
| TGGGTAGCACAGGAACCAAA+GGG | 0.603458 | 1_3:+52552617 | Msa0124680:CDS |
| GGTTAGGGATGATACTGAGA+AGG | 0.604612 | 1_3:+52550444 | Msa0124680:CDS |
| AGTTCAAGAGGATAAAGATG+TGG | 0.609994 | 1_3:+52550558 | Msa0124680:CDS |
| AAGGAGGTAGTTGAGTTGGG+TGG | 0.611624 | 1_3:+52550625 | Msa0124680:CDS |
| CTATTTGGTAGCATATTATG+GGG | 0.612060 | 1_3:+52551551 | Msa0124680:CDS |
| AATTGATAGAGGAAGCAAGC+GGG | 0.613209 | 1_3:+52553114 | Msa0124680:CDS |
| ATCATTCGGATAATCACTGT+GGG | 0.613540 | 1_3:-52552225 | None:intergenic |
| GCAAGGTGAGAAGCCATCCA+TGG | 0.614983 | 1_3:+52551460 | Msa0124680:CDS |
| GTTCAAGAGGATAAAGATGT+GGG | 0.615110 | 1_3:+52550559 | Msa0124680:CDS |
| TTGCCCGAATTACAATATTG+TGG | 0.615408 | 1_3:+52551978 | Msa0124680:CDS |
| GACACATGTTGCATGCAGAA+TGG | 0.617411 | 1_3:+52552809 | Msa0124680:CDS |
| GATTATGTTTACGCTTGCGA+CGG | 0.620559 | 1_3:-52552136 | None:intergenic |
| GCCTGCGCAGATGCATCCGA+AGG | 0.622190 | 1_3:-52551504 | None:intergenic |
| ATAAGTATCTTTAGGTACGC+AGG | 0.622403 | 1_3:-52551730 | None:intergenic |
| AAAAGGAAGAAACCAGCCAT+AGG | 0.628089 | 1_3:+52552749 | Msa0124680:CDS |
| GTCTTACTATTCGAGCTGAA+GGG | 0.628703 | 1_3:+52550581 | Msa0124680:CDS |
| AAGCTTCTCAGGTGAAAAGG+AGG | 0.628731 | 1_3:-52551841 | None:intergenic |
| TTCAGGTTGAGTCAGATGAA+GGG | 0.631536 | 1_3:+52551256 | Msa0124680:CDS |
| TAAGTTGGCTAGCAACCCTA+CGG | 0.637189 | 1_3:-52552412 | None:intergenic |
| GTTCAAAACAAGTTCAGCAG+GGG | 0.637786 | 1_3:-52553005 | None:intergenic |
| TCAGTACGCTGACGTCCCAA+GGG | 0.638239 | 1_3:+52552310 | Msa0124680:CDS |
| TTCGGGTTGAGTCAGATGAA+GGG | 0.639871 | 1_3:+52551097 | Msa0124680:CDS |
| TCTGTGAATGATCTGGTTTG+GGG | 0.640253 | 1_3:+52551438 | Msa0124680:CDS |
| CTGAGTCTCCTCAAAATTAG+GGG | 0.644036 | 1_3:-52552531 | None:intergenic |
| AATATCTGTCCTGGCCACCA+TGG | 0.644606 | 1_3:-52551477 | None:intergenic |
| ATTGGAGCTTACAACAGCGA+AGG | 0.645925 | 1_3:+52551914 | Msa0124680:CDS |
| TGATTATCCGAATGATGATG+AGG | 0.647957 | 1_3:+52552232 | Msa0124680:CDS |
| AGTTCAAAACAAGTTCAGCA+GGG | 0.652707 | 1_3:-52553006 | None:intergenic |
| GAAGCTTTCAACAATGCACT+CGG | 0.655548 | 1_3:-52553244 | None:intergenic |
| ATGGGGATGGAACGTACGCG+TGG | 0.660026 | 1_3:+52551568 | Msa0124680:CDS |
| CATCATTCGGATAATCACTG+TGG | 0.677313 | 1_3:-52552226 | None:intergenic |
| AAGCAGAATCTACAGCACTC+CGG | 0.679557 | 1_3:-52551665 | None:intergenic |
| GTTGAGCTGAATAACGATGT+GGG | 0.684140 | 1_3:+52550691 | Msa0124680:CDS |
| GGATGAGCAGAAGAAGAAGG+AGG | 0.687283 | 1_3:+52550867 | Msa0124680:CDS |
| AGGTGAGAAGCCATCCATGG+TGG | 0.691278 | 1_3:+52551463 | Msa0124680:CDS |
| TGTTGAGCTGAATAACGATG+TGG | 0.694789 | 1_3:+52550690 | Msa0124680:CDS |
| GCTGAGCTGAATCATGATGT+GGG | 0.707525 | 1_3:+52550523 | Msa0124680:CDS |
| CTGTTCATGTTTATACACGT+AGG | 0.716902 | 1_3:+52552903 | Msa0124680:CDS |
| AAATTGATAGAGGAAGCAAG+CGG | 0.720495 | 1_3:+52553113 | Msa0124680:CDS |
| ATGCAATTCCTGGTCCTGTG+TGG | 0.729902 | 1_3:-52553278 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATCAGTATCATTAATTA+AGG | - | chr1_3:52552027-52552046 | None:intergenic | 15.0% |
| !!! | AATTTTAAATGATTGTTTTG+TGG | - | chr1_3:52552381-52552400 | None:intergenic | 15.0% |
| !!! | ACAAAACAATCATTTAAAAT+TGG | + | chr1_3:52552380-52552399 | Msa0124680:CDS | 15.0% |
| !!! | AATAACATTTTTAAGCATTT+TGG | + | chr1_3:52553067-52553086 | Msa0124680:CDS | 15.0% |
| !! | TATTGAAAAGCAGAAAAATT+TGG | + | chr1_3:52551635-52551654 | Msa0124680:CDS | 20.0% |
| !! | ACAATTCATACAAGTAAAAA+TGG | + | chr1_3:52552071-52552090 | Msa0124680:CDS | 20.0% |
| !! | TATAGTTTCTTGAATGTTAT+AGG | + | chr1_3:52552644-52552663 | Msa0124680:CDS | 20.0% |
| !! | ATAGTTTCTTGAATGTTATA+GGG | + | chr1_3:52552645-52552664 | Msa0124680:CDS | 20.0% |
| !!! | TTTTAGAAAGAACTGCTATT+TGG | + | chr1_3:52551536-52551555 | Msa0124680:CDS | 25.0% |
| ! | ATCTTGTCATAAGTATCTTT+AGG | - | chr1_3:52551741-52551760 | None:intergenic | 25.0% |
| ! | TTATGACAAGATTAAACTTC+AGG | + | chr1_3:52551749-52551768 | Msa0124680:CDS | 25.0% |
| !!! | TTATTTAAGCTTGTTTCTGA+GGG | - | chr1_3:52553052-52553071 | None:intergenic | 25.0% |
| AAAGATGTGAATGTTGCTAT+TGG | + | chr1_3:52550739-52550758 | Msa0124680:CDS | 30.0% | |
| ! | TTTGAAGATTCTCAAGTTGT+TGG | + | chr1_3:52550775-52550794 | Msa0124680:CDS | 30.0% |
| TAATAAGTGACGATGTTACT+CGG | + | chr1_3:52550920-52550939 | Msa0124680:CDS | 30.0% | |
| ! | TGATGAGTGATGATGTTATT+CGG | + | chr1_3:52551079-52551098 | Msa0124680:CDS | 30.0% |
| ! | TGCTATTTGGTAGCATATTA+TGG | + | chr1_3:52551549-52551568 | Msa0124680:CDS | 30.0% |
| ! | GCTATTTGGTAGCATATTAT+GGG | + | chr1_3:52551550-52551569 | Msa0124680:CDS | 30.0% |
| ! | CTATTTGGTAGCATATTATG+GGG | + | chr1_3:52551551-52551570 | Msa0124680:CDS | 30.0% |
| ATAAGAGAAATGTGACCTAA+AGG | - | chr1_3:52551616-52551635 | None:intergenic | 30.0% | |
| !! | AGAAAAATTTGGAAGTGTTC+CGG | + | chr1_3:52551646-52551665 | Msa0124680:CDS | 30.0% |
| ACCTCCACAATATTGTAATT+CGG | - | chr1_3:52551985-52552004 | None:intergenic | 30.0% | |
| ATTACAATATTGTGGAGGTT+TGG | + | chr1_3:52551986-52552005 | Msa0124680:CDS | 30.0% | |
| AGTAAAAATGGTGATCAAAC+TGG | + | chr1_3:52552083-52552102 | Msa0124680:CDS | 30.0% | |
| CAAGCGTAAACATAATCTAA+AGG | + | chr1_3:52552142-52552161 | Msa0124680:CDS | 30.0% | |
| CGTAAACATAATCTAAAGGT+TGG | + | chr1_3:52552146-52552165 | Msa0124680:CDS | 30.0% | |
| CCAGAATATTTCAACATAGA+GGG | - | chr1_3:52552446-52552465 | None:intergenic | 30.0% | |
| TCCAGAATATTTCAACATAG+AGG | - | chr1_3:52552447-52552466 | None:intergenic | 30.0% | |
| !! | ATTTGCTATCTTTACTTCAG+TGG | + | chr1_3:52552597-52552616 | Msa0124680:CDS | 30.0% |
| ! | TTTGCTATCTTTACTTCAGT+GGG | + | chr1_3:52552598-52552617 | Msa0124680:CDS | 30.0% |
| AAGAAACTATAATCTCCCTT+TGG | - | chr1_3:52552635-52552654 | None:intergenic | 30.0% | |
| TTTCAGGAATTCAATCATTG+TGG | + | chr1_3:52552682-52552701 | Msa0124680:CDS | 30.0% | |
| GAAATCTTACCTACAAAAGT+TGG | + | chr1_3:52552722-52552741 | Msa0124680:CDS | 30.0% | |
| TCATCAAAGTCAAATGTTTC+AGG | - | chr1_3:52552782-52552801 | None:intergenic | 30.0% | |
| ! | AACATTTGACTTTGATGATC+TGG | + | chr1_3:52552784-52552803 | Msa0124680:CDS | 30.0% |
| ! | TAAACATGAACAGGTTTTTC+TGG | - | chr1_3:52552896-52552915 | None:intergenic | 30.0% |
| !! | GTTATTTAAGCTTGTTTCTG+AGG | - | chr1_3:52553053-52553072 | None:intergenic | 30.0% |
| ! | TAAGCATTTTGGACCTTTAA+AGG | + | chr1_3:52553078-52553097 | Msa0124680:CDS | 30.0% |
| GCTAAACAGTTCAACATATT+TGG | + | chr1_3:52553187-52553206 | Msa0124680:CDS | 30.0% | |
| TTCCAATGTTGAACTTAATG+TGG | + | chr1_3:52553309-52553328 | Msa0124680:CDS | 30.0% | |
| ! | GATTCTGATTTGTGCATACA+AGG | + | chr1_3:52550487-52550506 | Msa0124680:CDS | 35.0% |
| !! | AATCATGATGTGGGTTTTGA+TGG | + | chr1_3:52550532-52550551 | Msa0124680:CDS | 35.0% |
| !! | ATCATGATGTGGGTTTTGAT+GGG | + | chr1_3:52550533-52550552 | Msa0124680:CDS | 35.0% |
| AGTTCAAGAGGATAAAGATG+TGG | + | chr1_3:52550558-52550577 | Msa0124680:CDS | 35.0% | |
| GTTCAAGAGGATAAAGATGT+GGG | + | chr1_3:52550559-52550578 | Msa0124680:CDS | 35.0% | |
| !! | TTTTGAAGGTAAGAGTGAGA+AGG | + | chr1_3:52550606-52550625 | Msa0124680:CDS | 35.0% |
| GAAGCAACTTTGCATAAAGA+TGG | + | chr1_3:52550655-52550674 | Msa0124680:CDS | 35.0% | |
| TTGCATAAAGATGGTGTTTG+TGG | + | chr1_3:52550664-52550683 | Msa0124680:CDS | 35.0% | |
| !! | AATAACGATGTGGGTTTTGA+TGG | + | chr1_3:52550700-52550719 | Msa0124680:CDS | 35.0% |
| !! | ATAACGATGTGGGTTTTGAT+GGG | + | chr1_3:52550701-52550720 | Msa0124680:CDS | 35.0% |
| !! | TTCTCAAGTTGTTGGTTCAT+TGG | + | chr1_3:52550783-52550802 | Msa0124680:CDS | 35.0% |
| TGAAGCAACTTCGAAAACAT+TGG | + | chr1_3:52550846-52550865 | Msa0124680:CDS | 35.0% | |
| AATAAGTGACGATGTTACTC+GGG | + | chr1_3:52550921-52550940 | Msa0124680:CDS | 35.0% | |
| TGATGATTCAGACAAAGAGA+AGG | + | chr1_3:52550984-52551003 | Msa0124680:CDS | 35.0% | |
| TCAGACAAAGAGAAGGAAAT+CGG | + | chr1_3:52550991-52551010 | Msa0124680:CDS | 35.0% | |
| ! | GGAGACAAAGAAGTTTTTGA+TGG | + | chr1_3:52551012-52551031 | Msa0124680:CDS | 35.0% |
| ! | GATGAGTGATGATGTTATTC+GGG | + | chr1_3:52551080-52551099 | Msa0124680:CDS | 35.0% |
| ! | TGAGAAGATTGATGATTCAC+AGG | + | chr1_3:52551134-52551153 | Msa0124680:CDS | 35.0% |
| ! | TGATGCTTTTACCTGTTCAT+CGG | - | chr1_3:52551196-52551215 | None:intergenic | 35.0% |
| ! | GATGACTGATGATGTTATTC+AGG | + | chr1_3:52551239-52551258 | Msa0124680:CDS | 35.0% |
| ! | GATTGATTCAGACAAAGAGA+AGG | + | chr1_3:52551299-52551318 | Msa0124680:CDS | 35.0% |
| TCAGACAAAGAGAAGGAAAT+TGG | + | chr1_3:52550991-52551010 | Msa0124680:CDS | 35.0% | |
| ! | TGATGCTTTTACCTGTTCTT+CGG | - | chr1_3:52551352-52551371 | None:intergenic | 35.0% |
| ! | GAAGTTTTCTGTGAATGATC+TGG | + | chr1_3:52551431-52551450 | Msa0124680:CDS | 35.0% |
| TTTCTGTGAATGATCTGGTT+TGG | + | chr1_3:52551436-52551455 | Msa0124680:CDS | 35.0% | |
| ! | TTCTGTGAATGATCTGGTTT+GGG | + | chr1_3:52551437-52551456 | Msa0124680:CDS | 35.0% |
| AGGACAGATATTTGATCCTT+CGG | + | chr1_3:52551488-52551507 | Msa0124680:CDS | 35.0% | |
| CTTTGGATGAAGTCAAAAGA+CGG | + | chr1_3:52551685-52551704 | Msa0124680:CDS | 35.0% | |
| TTTGGATGAAGTCAAAAGAC+GGG | + | chr1_3:52551686-52551705 | Msa0124680:CDS | 35.0% | |
| ATAAGTATCTTTAGGTACGC+AGG | - | chr1_3:52551733-52551752 | None:intergenic | 35.0% | |
| !! | TTCAGGTTGTTGAAAACTGT+GGG | + | chr1_3:52551766-52551785 | Msa0124680:CDS | 35.0% |
| TCAACTCTATGTACCAAACT+TGG | - | chr1_3:52551804-52551823 | None:intergenic | 35.0% | |
| AAGTATTCCATAAGCTTCTC+AGG | - | chr1_3:52551855-52551874 | None:intergenic | 35.0% | |
| ! | GCTTTATCCAATTTTCCAAC+TGG | + | chr1_3:52551879-52551898 | Msa0124680:CDS | 35.0% |
| ! | TTATCCAATTTTCCAACTGG+AGG | + | chr1_3:52551882-52551901 | Msa0124680:CDS | 35.0% |
| TTGCCCGAATTACAATATTG+TGG | + | chr1_3:52551978-52551997 | Msa0124680:CDS | 35.0% | |
| CCTCCACAATATTGTAATTC+GGG | - | chr1_3:52551984-52552003 | None:intergenic | 35.0% | |
| ATCATTCGGATAATCACTGT+GGG | - | chr1_3:52552228-52552247 | None:intergenic | 35.0% | |
| ! | TGATTATCCGAATGATGATG+AGG | + | chr1_3:52552232-52552251 | Msa0124680:CDS | 35.0% |
| AGGGGAAAAAAGATTAGCAA+TGG | - | chr1_3:52552258-52552277 | None:intergenic | 35.0% | |
| TTCGTTTCTTGGAAAGGATA+GGG | - | chr1_3:52552277-52552296 | None:intergenic | 35.0% | |
| TTTCGTTTCTTGGAAAGGAT+AGG | - | chr1_3:52552278-52552297 | None:intergenic | 35.0% | |
| TAGTCTTTCGTTTCTTGGAA+AGG | - | chr1_3:52552283-52552302 | None:intergenic | 35.0% | |
| AGCAATAGTCTTTCGTTTCT+TGG | - | chr1_3:52552288-52552307 | None:intergenic | 35.0% | |
| CCCTCTATGTTGAAATATTC+TGG | + | chr1_3:52552443-52552462 | Msa0124680:CDS | 35.0% | |
| TCTGAGTCTCCTCAAAATTA+GGG | - | chr1_3:52552535-52552554 | None:intergenic | 35.0% | |
| TTCTGAGTCTCCTCAAAATT+AGG | - | chr1_3:52552536-52552555 | None:intergenic | 35.0% | |
| TCTAGAGATGAAAACTCTGT+AGG | - | chr1_3:52552575-52552594 | None:intergenic | 35.0% | |
| ! | CTTTTAGTGCCAACTTTTGT+AGG | - | chr1_3:52552734-52552753 | None:intergenic | 35.0% |
| CTACAAAAGTTGGCACTAAA+AGG | + | chr1_3:52552732-52552751 | Msa0124680:CDS | 35.0% | |
| CTACGTGTATAAACATGAAC+AGG | - | chr1_3:52552905-52552924 | None:intergenic | 35.0% | |
| CTGTTCATGTTTATACACGT+AGG | + | chr1_3:52552903-52552922 | Msa0124680:CDS | 35.0% | |
| AAAATACTGTTTCCTGGAAC+AGG | - | chr1_3:52552930-52552949 | None:intergenic | 35.0% | |
| ! | TGTTCCAGGAAACAGTATTT+TGG | + | chr1_3:52552929-52552948 | Msa0124680:CDS | 35.0% |
| ! | ATATAACCAGCAGGTTTTTC+AGG | - | chr1_3:52552974-52552993 | None:intergenic | 35.0% |
| TTCTCATCTATATAACCAGC+AGG | - | chr1_3:52552983-52553002 | None:intergenic | 35.0% | |
| AGTTCAAAACAAGTTCAGCA+GGG | - | chr1_3:52553009-52553028 | None:intergenic | 35.0% | |
| AAGTTCAAAACAAGTTCAGC+AGG | - | chr1_3:52553010-52553029 | None:intergenic | 35.0% | |
| !! | TGTTTTGAACTTTGCTGACT+TGG | + | chr1_3:52553018-52553037 | Msa0124680:CDS | 35.0% |
| TCTGTCTCAGATTCCTTTAA+AGG | - | chr1_3:52553094-52553113 | None:intergenic | 35.0% | |
| ! | TCTGAGACAGAAATTGATAG+AGG | + | chr1_3:52553103-52553122 | Msa0124680:CDS | 35.0% |
| AAATTGATAGAGGAAGCAAG+CGG | + | chr1_3:52553113-52553132 | Msa0124680:CDS | 35.0% | |
| AATGATCAAGATGCAATTCC+TGG | - | chr1_3:52553291-52553310 | None:intergenic | 35.0% | |
| GACCACATTAAGTTCAACAT+TGG | - | chr1_3:52553314-52553333 | None:intergenic | 35.0% | |
| ATAGATCCCTCAACCTCTAT+AGG | - | chr1_3:52550424-52550443 | None:intergenic | 40.0% | |
| TATAGAGGTTGAGGGATCTA+TGG | + | chr1_3:52550423-52550442 | Msa0124680:CDS | 40.0% | |
| !! | TTTTGATGGGTCAGTTCAAG+AGG | + | chr1_3:52550546-52550565 | Msa0124680:CDS | 40.0% |
| GTCTTACTATTCGAGCTGAA+GGG | + | chr1_3:52550581-52550600 | Msa0124680:CDS | 40.0% | |
| TGTTGAGCTGAATAACGATG+TGG | + | chr1_3:52550690-52550709 | Msa0124680:CDS | 40.0% | |
| GTTGAGCTGAATAACGATGT+GGG | + | chr1_3:52550691-52550710 | Msa0124680:CDS | 40.0% | |
| ! | GATGTGAATGTTGCTATTGG+AGG | + | chr1_3:52550742-52550761 | Msa0124680:CDS | 40.0% |
| ! | TTGCTATTGGAGGAACTGTA+GGG | + | chr1_3:52550752-52550771 | Msa0124680:CDS | 40.0% |
| !! | CAAGTTGTTGGTTCATTGGA+AGG | + | chr1_3:52550787-52550806 | Msa0124680:CDS | 40.0% |
| GAGAATGAGGTAGTTGAGTT+GGG | + | chr1_3:52550817-52550836 | Msa0124680:CDS | 40.0% | |
| ATTGGATGAGCAGAAGAAGA+AGG | + | chr1_3:52550864-52550883 | Msa0124680:CDS | 40.0% | |
| GGAGGAGGTAGATGAAATAT+TGG | + | chr1_3:52550888-52550907 | Msa0124680:CDS | 40.0% | |
| !!! | AGTTTTTGATGGCGAAGAAC+AGG | + | chr1_3:52551023-52551042 | Msa0124680:CDS | 40.0% |
| TGATGATTCACAGGAAGAGA+AGG | + | chr1_3:52551143-52551162 | Msa0124680:CDS | 40.0% | |
| TCACAGGAAGAGAAGGAAAT+TGG | + | chr1_3:52551150-52551169 | Msa0124680:CDS | 40.0% | |
| AGTTAATGATGCCGATGAAC+AGG | + | chr1_3:52551182-52551201 | Msa0124680:CDS | 40.0% | |
| !! | ATTCAGGTTGAGTCAGATGA+AGG | + | chr1_3:52551255-52551274 | Msa0124680:CDS | 40.0% |
| !! | TTCAGGTTGAGTCAGATGAA+GGG | + | chr1_3:52551256-52551275 | Msa0124680:CDS | 40.0% |
| GTTTAATGATGCCGAAGAAC+AGG | + | chr1_3:52551338-52551357 | Msa0124680:CDS | 40.0% | |
| !! | GAACAGGTAAAAGCATCAGA+TGG | + | chr1_3:52551354-52551373 | Msa0124680:CDS | 40.0% |
| ! | TTTTCCCTGAACTCTTCATG+GGG | - | chr1_3:52551398-52551417 | None:intergenic | 40.0% |
| ! | CTTTTCCCTGAACTCTTCAT+GGG | - | chr1_3:52551399-52551418 | None:intergenic | 40.0% |
| ! | ACTTTTCCCTGAACTCTTCA+TGG | - | chr1_3:52551400-52551419 | None:intergenic | 40.0% |
| ! | TCTGTGAATGATCTGGTTTG+GGG | + | chr1_3:52551438-52551457 | Msa0124680:CDS | 40.0% |
| GAAGGATCAAATATCTGTCC+TGG | - | chr1_3:52551489-52551508 | None:intergenic | 40.0% | |
| ! | TTGGTAGCATATTATGGGGA+TGG | + | chr1_3:52551555-52551574 | Msa0124680:CDS | 40.0% |
| TCAAAAGACGGGTCGAATTT+GGG | + | chr1_3:52551697-52551716 | Msa0124680:CDS | 40.0% | |
| !! | CTTCAGGTTGTTGAAAACTG+TGG | + | chr1_3:52551765-52551784 | Msa0124680:CDS | 40.0% |
| CATAAGCTTCTCAGGTGAAA+AGG | - | chr1_3:52551847-52551866 | None:intergenic | 40.0% | |
| ! | CTTTTCACCTGAGAAGCTTA+TGG | + | chr1_3:52551845-52551864 | Msa0124680:CDS | 40.0% |
| AAAGCCTCCAGTTGGAAAAT+TGG | - | chr1_3:52551889-52551908 | None:intergenic | 40.0% | |
| ! | CTTGCATTCTACCGGTTAAA+GGG | + | chr1_3:52551945-52551964 | Msa0124680:CDS | 40.0% |
| AGCAAGAGTAACCCTTTAAC+CGG | - | chr1_3:52551959-52551978 | None:intergenic | 40.0% | |
| CCCGAATTACAATATTGTGG+AGG | + | chr1_3:52551981-52552000 | Msa0124680:CDS | 40.0% | |
| AATGGTGATCAAACTGGAAC+CGG | + | chr1_3:52552089-52552108 | Msa0124680:CDS | 40.0% | |
| ! | GTTTGTGGCTTTTGAATCTC+CGG | - | chr1_3:52552111-52552130 | None:intergenic | 40.0% |
| ATTATGTTTACGCTTGCGAC+GGG | - | chr1_3:52552138-52552157 | None:intergenic | 40.0% | |
| GATTATGTTTACGCTTGCGA+CGG | - | chr1_3:52552139-52552158 | None:intergenic | 40.0% | |
| TAATCACTGTGGGTAGAATC+TGG | - | chr1_3:52552218-52552237 | None:intergenic | 40.0% | |
| CATCATTCGGATAATCACTG+TGG | - | chr1_3:52552229-52552248 | None:intergenic | 40.0% | |
| TCGTTTCTTGGAAAGGATAG+GGG | - | chr1_3:52552276-52552295 | None:intergenic | 40.0% | |
| ! | GGTGCTTGAACTTTTCTCAA+GGG | - | chr1_3:52552360-52552379 | None:intergenic | 40.0% |
| ! | TGGTGCTTGAACTTTTCTCA+AGG | - | chr1_3:52552361-52552380 | None:intergenic | 40.0% |
| AAATTGGCGATTGTATCCGT+AGG | + | chr1_3:52552396-52552415 | Msa0124680:CDS | 40.0% | |
| AATTGGCGATTGTATCCGTA+GGG | + | chr1_3:52552397-52552416 | Msa0124680:CDS | 40.0% | |
| TCCTCAAAATTAGGGGAGAA+GGG | - | chr1_3:52552527-52552546 | None:intergenic | 40.0% | |
| CTGAGTCTCCTCAAAATTAG+GGG | - | chr1_3:52552534-52552553 | None:intergenic | 40.0% | |
| GGAGTTTCTTCTCTGATTTC+AGG | + | chr1_3:52552666-52552685 | Msa0124680:CDS | 40.0% | |
| GTAGGTAAGATTTCTTTCCC+AGG | - | chr1_3:52552716-52552735 | None:intergenic | 40.0% | |
| AAAAGGAAGAAACCAGCCAT+AGG | + | chr1_3:52552749-52552768 | Msa0124680:CDS | 40.0% | |
| TGTTTCAGGAGATTCACCTA+TGG | - | chr1_3:52552768-52552787 | None:intergenic | 40.0% | |
| GCTACCAAAATACTGTTTCC+TGG | - | chr1_3:52552936-52552955 | None:intergenic | 40.0% | |
| GTTCAAAACAAGTTCAGCAG+GGG | - | chr1_3:52553008-52553027 | None:intergenic | 40.0% | |
| AATTGATAGAGGAAGCAAGC+GGG | + | chr1_3:52553114-52553133 | Msa0124680:CDS | 40.0% | |
| GAAGCTTTCAACAATGCACT+CGG | - | chr1_3:52553247-52553266 | None:intergenic | 40.0% | |
| ! | TTCATCTTTTGCTACCACAC+AGG | + | chr1_3:52553264-52553283 | Msa0124680:CDS | 40.0% |
| AGGTTGAGGGATCTATGGTT+AGG | + | chr1_3:52550428-52550447 | Msa0124680:CDS | 45.0% | |
| GGTTGAGGGATCTATGGTTA+GGG | + | chr1_3:52550429-52550448 | Msa0124680:CDS | 45.0% | |
| GGTTAGGGATGATACTGAGA+AGG | + | chr1_3:52550444-52550463 | Msa0124680:CDS | 45.0% | |
| GGATGATACTGAGAAGGACT+TGG | + | chr1_3:52550450-52550469 | Msa0124680:CDS | 45.0% | |
| ! | ACTGAGAAGGACTTGGTAGT+TGG | + | chr1_3:52550457-52550476 | Msa0124680:CDS | 45.0% |
| ! | CTGAGAAGGACTTGGTAGTT+GGG | + | chr1_3:52550458-52550477 | Msa0124680:CDS | 45.0% |
| ! | TGAGAAGGACTTGGTAGTTG+GGG | + | chr1_3:52550459-52550478 | Msa0124680:CDS | 45.0% |
| TGCTGAGCTGAATCATGATG+TGG | + | chr1_3:52550522-52550541 | Msa0124680:CDS | 45.0% | |
| GCTGAGCTGAATCATGATGT+GGG | + | chr1_3:52550523-52550542 | Msa0124680:CDS | 45.0% | |
| GGTCTTACTATTCGAGCTGA+AGG | + | chr1_3:52550580-52550599 | Msa0124680:CDS | 45.0% | |
| TGAAGGTAAGAGTGAGAAGG+AGG | + | chr1_3:52550609-52550628 | Msa0124680:CDS | 45.0% | |
| TGAGAAGGAGGTAGTTGAGT+TGG | + | chr1_3:52550621-52550640 | Msa0124680:CDS | 45.0% | |
| GAGAAGGAGGTAGTTGAGTT+GGG | + | chr1_3:52550622-52550641 | Msa0124680:CDS | 45.0% | |
| !! | TTTTGATGGGTCAGTTGAGG+AGG | + | chr1_3:52550714-52550733 | Msa0124680:CDS | 45.0% |
| ! | TTTGATGGGTCAGTTGAGGA+GGG | + | chr1_3:52550715-52550734 | Msa0124680:CDS | 45.0% |
| ! | GTTGCTATTGGAGGAACTGT+AGG | + | chr1_3:52550751-52550770 | Msa0124680:CDS | 45.0% |
| CGAGAATGAGGTAGTTGAGT+TGG | + | chr1_3:52550816-52550835 | Msa0124680:CDS | 45.0% | |
| !! | AATGAGGTAGTTGAGTTGGG+TGG | + | chr1_3:52550820-52550839 | Msa0124680:CDS | 45.0% |
| !! | ATGAGGTAGTTGAGTTGGGT+GGG | + | chr1_3:52550821-52550840 | Msa0124680:CDS | 45.0% |
| !! | GGAGGGAAAGTTGGTATTTC+TGG | + | chr1_3:52550955-52550974 | Msa0124680:CDS | 45.0% |
| !! | GAACAGGCAAAAGCATCAGA+TGG | + | chr1_3:52551039-52551058 | Msa0124680:CDS | 45.0% |
| !! | ATTCGGGTTGAGTCAGATGA+AGG | + | chr1_3:52551096-52551115 | Msa0124680:CDS | 45.0% |
| !! | TTCGGGTTGAGTCAGATGAA+GGG | + | chr1_3:52551097-52551116 | Msa0124680:CDS | 45.0% |
| GAGTCAGATGAAGGGAAAGT+TGG | + | chr1_3:52551105-52551124 | Msa0124680:CDS | 45.0% | |
| !! | GAACAGGTAAAAGCATCAGC+TGG | + | chr1_3:52551198-52551217 | Msa0124680:CDS | 45.0% |
| GAGTCAGATGAAGGGAAAGT+TGG | + | chr1_3:52551105-52551124 | Msa0124680:CDS | 45.0% | |
| ATGTCCCCATGAAGAGTTCA+GGG | + | chr1_3:52551391-52551410 | Msa0124680:CDS | 45.0% | |
| TCAGGGAAAAGTCGTAGAGA+AGG | + | chr1_3:52551408-52551427 | Msa0124680:CDS | 45.0% | |
| CAGGGAAAAGTCGTAGAGAA+GGG | + | chr1_3:52551409-52551428 | Msa0124680:CDS | 45.0% | |
| GGTCTAAGCTGAAGTCCTTT+AGG | + | chr1_3:52551598-52551617 | Msa0124680:CDS | 45.0% | |
| AAGCAGAATCTACAGCACTC+CGG | - | chr1_3:52551668-52551687 | None:intergenic | 45.0% | |
| ! | GAGTGCTGTAGATTCTGCTT+TGG | + | chr1_3:52551668-52551687 | Msa0124680:CDS | 45.0% |
| GTCAAAAGACGGGTCGAATT+TGG | + | chr1_3:52551696-52551715 | Msa0124680:CDS | 45.0% | |
| GATTCGACAAGAGCCAAGTT+TGG | + | chr1_3:52551788-52551807 | Msa0124680:CDS | 45.0% | |
| AAGCTTCTCAGGTGAAAAGG+AGG | - | chr1_3:52551844-52551863 | None:intergenic | 45.0% | |
| AATCGATCAAAGCCTCCAGT+TGG | - | chr1_3:52551897-52551916 | None:intergenic | 45.0% | |
| ! | AACTGGAGGCTTTGATCGAT+TGG | + | chr1_3:52551896-52551915 | Msa0124680:CDS | 45.0% |
| ATTGGAGCTTACAACAGCGA+AGG | + | chr1_3:52551914-52551933 | Msa0124680:CDS | 45.0% | |
| ! | GCTTGCATTCTACCGGTTAA+AGG | + | chr1_3:52551944-52551963 | Msa0124680:CDS | 45.0% |
| !! | AGCTTGTTAGAACCAGCCAA+TGG | + | chr1_3:52552188-52552207 | Msa0124680:CDS | 45.0% |
| ! | GCTTGTTAGAACCAGCCAAT+GGG | + | chr1_3:52552189-52552208 | Msa0124680:CDS | 45.0% |
| GGTAGAATCTGGATTCCCAT+TGG | - | chr1_3:52552207-52552226 | None:intergenic | 45.0% | |
| GCAATGGCCTCATCATCATT+CGG | - | chr1_3:52552242-52552261 | None:intergenic | 45.0% | |
| TTCTTCTGCCTTTCACCCTT+GGG | - | chr1_3:52552328-52552347 | None:intergenic | 45.0% | |
| TTTCTTCTGCCTTTCACCCT+TGG | - | chr1_3:52552329-52552348 | None:intergenic | 45.0% | |
| ! | TAAGTTGGCTAGCAACCCTA+CGG | - | chr1_3:52552415-52552434 | None:intergenic | 45.0% |
| ! | TTCTGGAGACACTTCTCTGA+TGG | + | chr1_3:52552460-52552479 | Msa0124680:CDS | 45.0% |
| TCTCTGATGGCAGATGGTAA+TGG | + | chr1_3:52552473-52552492 | Msa0124680:CDS | 45.0% | |
| ! | TCCCTTCTCCCCTAATTTTG+AGG | + | chr1_3:52552523-52552542 | Msa0124680:CDS | 45.0% |
| CTCCTCAAAATTAGGGGAGA+AGG | - | chr1_3:52552528-52552547 | None:intergenic | 45.0% | |
| TTTACTTCAGTGGGTAGCAC+AGG | + | chr1_3:52552607-52552626 | Msa0124680:CDS | 45.0% | |
| GATTTCTTTCCCAGGATCAC+TGG | - | chr1_3:52552708-52552727 | None:intergenic | 45.0% | |
| GACACATGTTGCATGCAGAA+TGG | + | chr1_3:52552809-52552828 | Msa0124680:CDS | 45.0% | |
| !!! | AGGTTTTTCTGGCTCAGAAG+GGG | - | chr1_3:52552885-52552904 | None:intergenic | 45.0% |
| !!! | CAGGTTTTTCTGGCTCAGAA+GGG | - | chr1_3:52552886-52552905 | None:intergenic | 45.0% |
| !!! | ACAGGTTTTTCTGGCTCAGA+AGG | - | chr1_3:52552887-52552906 | None:intergenic | 45.0% |
| !! | TTTTGGTAGCAATCACGCTG+AGG | + | chr1_3:52552946-52552965 | Msa0124680:CDS | 45.0% |
| AGGAGGAGGAGGATTGTCTA+GGG | - | chr1_3:52550401-52550420 | None:intergenic | 50.0% | |
| TCAACCTCTATAGGAGGAGG+AGG | - | chr1_3:52550415-52550434 | None:intergenic | 50.0% | |
| TCCTCCTCCTATAGAGGTTG+AGG | + | chr1_3:52550414-52550433 | Msa0124680:CDS | 50.0% | |
| CCTCCTCCTATAGAGGTTGA+GGG | + | chr1_3:52550415-52550434 | Msa0124680:CDS | 50.0% | |
| GATCCCTCAACCTCTATAGG+AGG | - | chr1_3:52550421-52550440 | None:intergenic | 50.0% | |
| !! | GGACTTGGTAGTTGGGGTTT+TGG | + | chr1_3:52550465-52550484 | Msa0124680:CDS | 50.0% |
| ! | CGAGCTGAAGGGTCTTTTGA+AGG | + | chr1_3:52550592-52550611 | Msa0124680:CDS | 50.0% |
| !! | AAGGAGGTAGTTGAGTTGGG+TGG | + | chr1_3:52550625-52550644 | Msa0124680:CDS | 50.0% |
| !! | GGGTTTTGATGGGTCAGTTG+AGG | + | chr1_3:52550711-52550730 | Msa0124680:CDS | 50.0% |
| GGAAGGTAAGAGCGAGAATG+AGG | + | chr1_3:52550804-52550823 | Msa0124680:CDS | 50.0% | |
| GGATGAGCAGAAGAAGAAGG+AGG | + | chr1_3:52550867-52550886 | Msa0124680:CDS | 50.0% | |
| TGAGCAGAAGAAGAAGGAGG+AGG | + | chr1_3:52550870-52550889 | Msa0124680:CDS | 50.0% | |
| !! | CGATGTTACTCGGGTTGAGT+CGG | + | chr1_3:52550930-52550949 | Msa0124680:CDS | 50.0% |
| CATGTCCCCATGAAGAGTTC+AGG | + | chr1_3:52551390-52551409 | Msa0124680:CDS | 50.0% | |
| !! | GAATGATCTGGTTTGGGGCA+AGG | + | chr1_3:52551443-52551462 | Msa0124680:CDS | 50.0% |
| AATATCTGTCCTGGCCACCA+TGG | - | chr1_3:52551480-52551499 | None:intergenic | 50.0% | |
| GAACGTACGCGTGGAATGAA+GGG | + | chr1_3:52551577-52551596 | Msa0124680:CDS | 50.0% | |
| CTCAGCTGCTTGCATTCTAC+CGG | + | chr1_3:52551937-52551956 | Msa0124680:CDS | 50.0% | |
| GAATCTGGATTCCCATTGGC+TGG | - | chr1_3:52552203-52552222 | None:intergenic | 50.0% | |
| AGGGTTGCTAGCCAACTTAC+TGG | + | chr1_3:52552416-52552435 | Msa0124680:CDS | 50.0% | |
| GGGTTGCTAGCCAACTTACT+GGG | + | chr1_3:52552417-52552436 | Msa0124680:CDS | 50.0% | |
| GACACTTCTCTGATGGCAGA+TGG | + | chr1_3:52552467-52552486 | Msa0124680:CDS | 50.0% | |
| TGGGTAGCACAGGAACCAAA+GGG | + | chr1_3:52552617-52552636 | Msa0124680:CDS | 50.0% | |
| ATCATTGTGGCCAGTGATCC+TGG | + | chr1_3:52552695-52552714 | Msa0124680:CDS | 50.0% | |
| TCATTGTGGCCAGTGATCCT+GGG | + | chr1_3:52552696-52552715 | Msa0124680:CDS | 50.0% | |
| TCAGGAGATTCACCTATGGC+TGG | - | chr1_3:52552764-52552783 | None:intergenic | 50.0% | |
| ATACACGTAGGTCCTGTTCC+AGG | + | chr1_3:52552915-52552934 | Msa0124680:CDS | 50.0% | |
| GAGGTTCCTGAAAAACCTGC+TGG | + | chr1_3:52552965-52552984 | Msa0124680:CDS | 50.0% | |
| ! | CACTCGGTGAGTAGTTAAGC+TGG | - | chr1_3:52553231-52553250 | None:intergenic | 50.0% |
| ! | TTTTGCTACCACACAGGACC+AGG | + | chr1_3:52553270-52553289 | Msa0124680:CDS | 50.0% |
| ATGCAATTCCTGGTCCTGTG+TGG | - | chr1_3:52553281-52553300 | None:intergenic | 50.0% | |
| GAGGAGGAGGAGGATTGTCT+AGG | - | chr1_3:52550402-52550421 | None:intergenic | 55.0% | |
| TCCTCCTCCTCCTCCTATAG+AGG | + | chr1_3:52550408-52550427 | Msa0124680:CDS | 55.0% | |
| ACCTCTATAGGAGGAGGAGG+AGG | - | chr1_3:52550412-52550431 | None:intergenic | 55.0% | |
| CCCTCAACCTCTATAGGAGG+AGG | - | chr1_3:52550418-52550437 | None:intergenic | 55.0% | |
| !! | GAGGTAGTTGAGTTGGGTGG+TGG | + | chr1_3:52550628-52550647 | Msa0124680:CDS | 55.0% |
| GCAGAAGAAGAAGGAGGAGG+AGG | + | chr1_3:52550873-52550892 | Msa0124680:CDS | 55.0% | |
| !! | GTTACTCGGGTTGAGTCGGA+TGG | + | chr1_3:52550934-52550953 | Msa0124680:CDS | 55.0% |
| GAGTCGGATGGAGGGAAAGT+TGG | + | chr1_3:52550946-52550965 | Msa0124680:CDS | 55.0% | |
| GCAAGGTGAGAAGCCATCCA+TGG | + | chr1_3:52551460-52551479 | Msa0124680:CDS | 55.0% | |
| AGGTGAGAAGCCATCCATGG+TGG | + | chr1_3:52551463-52551482 | Msa0124680:CDS | 55.0% | |
| GGAACGTACGCGTGGAATGA+AGG | + | chr1_3:52551576-52551595 | Msa0124680:CDS | 55.0% | |
| AAGACGGGTCGAATTTGGGC+TGG | + | chr1_3:52551701-52551720 | Msa0124680:CDS | 55.0% | |
| !! | CTTGCGACGGGATTGGTTTG+TGG | - | chr1_3:52552126-52552145 | None:intergenic | 55.0% |
| GTTTACGCTTGCGACGGGAT+TGG | - | chr1_3:52552133-52552152 | None:intergenic | 55.0% | |
| ATCAGTACGCTGACGTCCCA+AGG | + | chr1_3:52552309-52552328 | Msa0124680:CDS | 55.0% | |
| TCAGTACGCTGACGTCCCAA+GGG | + | chr1_3:52552310-52552329 | Msa0124680:CDS | 55.0% | |
| TAGAGGGCGACCCAGTAAGT+TGG | - | chr1_3:52552430-52552449 | None:intergenic | 55.0% | |
| GTGGGTAGCACAGGAACCAA+AGG | + | chr1_3:52552616-52552635 | Msa0124680:CDS | 55.0% | |
| !! | ACTCGGGTTGAGTCGGATGG+AGG | + | chr1_3:52550937-52550956 | Msa0124680:CDS | 60.0% |
| !! | CTCGGGTTGAGTCGGATGGA+GGG | + | chr1_3:52550938-52550957 | Msa0124680:CDS | 60.0% |
| AGAAGCCATCCATGGTGGCC+AGG | + | chr1_3:52551468-52551487 | Msa0124680:CDS | 60.0% | |
| TCTGTCCTGGCCACCATGGA+TGG | - | chr1_3:52551476-52551495 | None:intergenic | 60.0% | |
| TCCTTCGGATGCATCTGCGC+AGG | + | chr1_3:52551503-52551522 | Msa0124680:CDS | 60.0% | |
| ATGGGGATGGAACGTACGCG+TGG | + | chr1_3:52551568-52551587 | Msa0124680:CDS | 60.0% | |
| GCTGACGTCCCAAGGGTGAA+AGG | + | chr1_3:52552317-52552336 | Msa0124680:CDS | 60.0% | |
| ! | GAAGGGGCGCGCTTATAGTC+TGG | - | chr1_3:52552869-52552888 | None:intergenic | 60.0% |
| AGGAAGCAAGCGGGCAAGAG+TGG | + | chr1_3:52553123-52553142 | Msa0124680:CDS | 60.0% | |
| ! | GCCGATGCGCAAGCTGCTTT+CGG | + | chr1_3:52553160-52553179 | Msa0124680:CDS | 60.0% |
| GCCGAAAGCAGCTTGCGCAT+CGG | - | chr1_3:52553164-52553183 | None:intergenic | 60.0% | |
| GCCTGCGCAGATGCATCCGA+AGG | - | chr1_3:52551507-52551526 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 52550379 | 52553336 | 52550379 | ID=Msa0124680;Name=Msa0124680 |
| chr1_3 | mRNA | 52550379 | 52553336 | 52550379 | ID=Msa0124680-mRNA-1;Parent=Msa0124680;Name=Msa0124680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|-1|0|1|-1|1|1|0|985 |
| chr1_3 | exon | 52550379 | 52553336 | 52550379 | ID=Msa0124680-mRNA-1:exon:16123;Parent=Msa0124680-mRNA-1 |
| chr1_3 | CDS | 52550379 | 52553336 | 52550379 | ID=Msa0124680-mRNA-1:cds;Parent=Msa0124680-mRNA-1 |
| Gene Sequence |
| Protein sequence |