AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1286550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1286550 MtrunA17_Chr8g0361901 97.678 732 16 1 1 732 1 731 0.0 1488
Msa1286550 MtrunA17_Chr5g0416711 81.421 732 136 0 1 732 1 732 0.0 1261
Msa1286550 MtrunA17_Chr6g0453061 77.915 729 160 1 5 732 2 730 0.0 1179
Msa1286550 MtrunA17_Chr1g0166181 76.828 725 162 3 11 732 18 739 0.0 1160
Msa1286550 MtrunA17_Chr1g0166131 75.862 725 169 3 11 732 19 740 0.0 1132
Msa1286550 MtrunA17_Chr6g0453081 74.074 729 188 1 5 732 2 730 0.0 1115
Msa1286550 MtrunA17_Chr7g0231701 77.941 680 139 2 53 732 40 708 0.0 1102
Msa1286550 MtrunA17_Chr1g0166141 78.428 598 127 1 137 732 77 674 0.0 973
Msa1286550 MtrunA17_Chr1g0166141 81.579 76 14 0 278 353 1 76 6.55e-32 132
Msa1286550 MtrunA17_Chr7g0231741 86.290 372 51 0 361 732 4 375 0.0 680
Msa1286550 MtrunA17_Chr5g0416731 70.048 414 79 2 53 421 25 438 0.0 582
Msa1286550 MtrunA17_Chr7g0231721 75.988 329 72 2 53 380 25 347 9.55e-179 514
Msa1286550 MtrunA17_Chr7g0231751 77.097 310 71 0 1 310 1 310 7.40e-178 510
Msa1286550 MtrunA17_Chr5g0416691 62.035 403 147 3 332 732 3 401 8.99e-178 513
Msa1286550 MtrunA17_Chr2g0285881 40.296 742 410 14 4 732 71 792 5.84e-177 526
Msa1286550 MtrunA17_Chr7g0231791 62.035 403 147 3 332 732 3 401 3.27e-176 509
Msa1286550 MtrunA17_Chr5g0416831 74.847 326 45 2 407 732 1 289 1.74e-169 488
Msa1286550 MtrunA17_Chr5g0416901 71.609 317 89 1 55 371 21 336 1.80e-163 475
Msa1286550 MtrunA17_Chr7g0231581 71.565 313 88 1 59 371 1 312 9.95e-163 472
Msa1286550 MtrunA17_Chr2g0296381 34.085 710 429 14 52 732 43 742 2.46e-130 404
Msa1286550 MtrunA17_Chr4g0067011 32.765 763 463 15 1 732 1 744 3.43e-127 395
Msa1286550 MtrunA17_Chr7g0231571 71.951 246 68 1 59 304 1 245 4.95e-124 370
Msa1286550 MtrunA17_Chr5g0416911 68.400 250 78 1 55 304 5 253 7.27e-119 357
Msa1286550 MtrunA17_Chr7g0268881 39.440 393 224 6 347 732 4 389 2.11e-83 270
Msa1286550 MtrunA17_Chr7g0231801 52.191 251 118 2 59 307 1 251 6.74e-82 261
Msa1286550 MtrunA17_Chr5g0416681 52.191 251 118 2 59 307 1 251 4.05e-81 259
Msa1286550 MtrunA17_Chr5g0416931 72.727 165 45 0 53 217 38 202 1.34e-80 255
Msa1286550 MtrunA17_Chr1g0166151 66.304 184 61 1 83 266 1 183 1.30e-79 252
Msa1286550 MtrunA17_Chr7g0231561 70.807 161 47 0 59 219 1 161 2.40e-77 245
Msa1286550 MtrunA17_Chr5g0416841 75.258 97 24 0 205 301 12 108 8.96e-47 161
Msa1286550 MtrunA17_Chr7g0268891 28.939 311 202 7 26 320 9 316 4.76e-38 145
Msa1286550 MtrunA17_Chr5g0416721 72.222 54 15 0 1 54 1 54 5.01e-21 87.4
Msa1286550 MtrunA17_Chr7g0231731 70.370 54 16 0 1 54 1 54 2.57e-20 85.1
Msa1286550 MtrunA17_Chr7g0231711 66.667 54 17 1 1 54 1 53 1.90e-17 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1286550 AT1G26830.1 82.104 732 131 0 1 732 1 732 0.0 1288
Msa1286550 AT1G69670.1 81.557 732 135 0 1 732 1 732 0.0 1278
Msa1286550 AT1G69670.2 81.557 732 135 0 1 732 1 732 0.0 1278
Msa1286550 AT5G46210.1 39.702 738 420 13 4 732 71 792 3.51e-168 503
Msa1286550 AT4G02570.4 33.946 707 431 13 52 732 42 738 1.09e-132 410
Msa1286550 AT4G02570.2 33.946 707 431 13 52 732 42 738 1.09e-132 410
Msa1286550 AT4G02570.1 33.946 707 431 13 52 732 42 738 1.09e-132 410
Msa1286550 AT4G02570.3 33.946 707 431 13 52 732 42 738 1.09e-132 410
Msa1286550 AT1G02980.1 32.349 711 442 14 51 732 42 742 1.31e-115 365
Msa1286550 AT1G02980.2 32.349 711 442 14 51 732 42 742 1.31e-115 365
Msa1286550 AT1G43140.1 32.240 701 425 17 52 732 51 721 4.97e-104 335
Msa1286550 AT1G59790.2 26.235 324 223 8 52 366 48 364 1.02e-29 122
Msa1286550 AT1G59790.1 26.619 278 192 7 52 320 48 322 2.94e-27 114
Msa1286550 AT1G59800.1 29.775 178 120 2 80 254 72 247 3.25e-22 97.1
Msa1286550 AT4G12100.1 23.003 313 206 10 24 317 76 372 2.38e-15 79.7
Msa1286550 AT3G46910.1 24.280 243 155 7 11 229 7 244 6.94e-12 66.6

Find 170 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACCTCATCGATCGATTT+AGG 0.128702 8_3:-34504745 Msa1286550:five_prime_UTR
ACTGGATCCTTCAATCTTTC+AGG 0.166080 8_3:+34499708 None:intergenic
AATATGGTGCTTCACAAATT+TGG 0.198790 8_3:-34500503 Msa1286550:CDS
CACAACACTCAATGAATCTT+TGG 0.228824 8_3:+34500039 None:intergenic
AATCAATGGGTCTACTTAAA+AGG 0.234531 8_3:+34498399 None:intergenic
ACTTAGGATAAAATTATTAA+TGG 0.235468 8_3:+34504870 None:intergenic
TCTGAAAATTCTTCTTCTTC+TGG 0.255367 8_3:+34504705 None:intergenic
TACTCATCGGCTCCTTTCTA+AGG 0.269735 8_3:+34498851 None:intergenic
TTAGCTTTGAAGAACTTTAC+AGG 0.291791 8_3:-34504574 Msa1286550:intron
TTAATCCATATGGAGAATTC+TGG 0.298338 8_3:-34499876 Msa1286550:CDS
CAACCTCATCGATCGATTTA+GGG 0.301852 8_3:-34504744 Msa1286550:five_prime_UTR
AAACTATACAAGGTTAAAAT+AGG 0.302125 8_3:-34498778 Msa1286550:CDS
ACAATCATTGGCTTTAGTTA+AGG 0.303291 8_3:-34498884 Msa1286550:CDS
TGATGATAAATATGAAGATT+TGG 0.316741 8_3:-34499835 Msa1286550:CDS
CAATCATTGGCTTTAGTTAA+GGG 0.333046 8_3:-34498883 Msa1286550:CDS
ACGAGGAATTCAAAGCATTC+TGG 0.343800 8_3:+34499604 None:intergenic
AAAACATCGCAACAACAAAT+AGG 0.345811 8_3:+34498354 None:intergenic
GCAGACTTAAAAGCAACCTT+TGG 0.354772 8_3:-34499045 Msa1286550:CDS
CTGCACTTTGCGAGAAGTTT+CGG 0.357858 8_3:-34499128 Msa1286550:CDS
CATGTCTTATCTGCATATTT+CGG 0.358065 8_3:+34504650 None:intergenic
TCGGCTACTGAACACACTTC+TGG 0.360939 8_3:-34500216 Msa1286550:CDS
AGCTCAAGGAGGATCCTTTC+TGG 0.366530 8_3:-34500408 Msa1286550:CDS
TAAGAGATGTCTACAATCAT+TGG 0.371194 8_3:-34498896 Msa1286550:CDS
TCAGTTTACATCAAAATTAG+AGG 0.377339 8_3:-34499310 Msa1286550:CDS
GTTTAAGCATAGGGTTGTTA+TGG 0.383121 8_3:-34504675 Msa1286550:CDS
ATGCGTTTCTTGACCTCTGT+TGG 0.385513 8_3:+34498571 None:intergenic
AGTTTCCTGTTTCTCAGGTT+CGG 0.385761 8_3:+34498732 None:intergenic
TGCCGAGTTTCCTGTTTCTC+AGG 0.386423 8_3:+34498727 None:intergenic
TGGAAGAACTGAACAGGAAA+TGG 0.387376 8_3:-34500388 Msa1286550:CDS
TGTGTTGTTTGCTTCAGATT+TGG 0.388033 8_3:+34504950 None:intergenic
ACTGTCCAGGTTCTTACAAC+AGG 0.395150 8_3:-34499201 Msa1286550:CDS
TCAATATACATTGAAATCAA+TGG 0.397685 8_3:+34498385 None:intergenic
GTAGGACCGTCGCCTAAGTC+AGG 0.405237 8_3:+34499228 None:intergenic
TGAAATGAACTCTGGAGAAC+GGG 0.408147 8_3:+34499557 None:intergenic
GGAATCCGAACCTGAGAAAC+AGG 0.414007 8_3:-34498737 Msa1286550:CDS
TCATTTATTCCAACCAGATC+AGG 0.420558 8_3:-34500241 Msa1286550:CDS
GATAAAATTATTAATGGTGG+TGG 0.421341 8_3:+34504876 None:intergenic
TATTACCTTGGCACACATAC+TGG 0.423807 8_3:-34499102 Msa1286550:CDS
ACAACACTCAATGAATCTTT+GGG 0.423919 8_3:+34500040 None:intergenic
CAGCATTATTGAAAAGCATA+AGG 0.426039 8_3:+34498974 None:intergenic
CCTGTTCAGTTCTTCCAGAA+AGG 0.426116 8_3:+34500394 None:intergenic
GATGATAAATATGAAGATTT+GGG 0.429458 8_3:-34499834 Msa1286550:CDS
AGCCTCTGCACAAACTCAAC+TGG 0.433380 8_3:+34499690 None:intergenic
CATGCTCAGATTAATCCATA+TGG 0.434059 8_3:-34499886 Msa1286550:CDS
ACTTCACACATAAGGGAATC+TGG 0.436605 8_3:-34499750 Msa1286550:CDS
AGGAACTGTAGTTGCACAAA+AGG 0.436933 8_3:-34498758 Msa1286550:CDS
GTCGCCTAAGTCAGGGTGGC+TGG 0.440169 8_3:+34499236 None:intergenic
TACTGATCCTGAAAGATTGA+AGG 0.441993 8_3:-34499715 Msa1286550:CDS
AACTCGGCAGCGAGTGGAGG+AGG 0.446158 8_3:-34498713 Msa1286550:CDS
AAAGCATAAGGACACACATT+TGG 0.448174 8_3:+34498986 None:intergenic
GGCAGCGAGTGGAGGAGGAC+AGG 0.448240 8_3:-34498708 Msa1286550:CDS
GAAGTATTATAAACAGCATC+TGG 0.448249 8_3:-34499415 Msa1286550:CDS
ACTTGTCATTATTGAATGCC+AGG 0.448807 8_3:+34499631 None:intergenic
ATTCAGAAATGCATACAATA+TGG 0.452155 8_3:-34500519 Msa1286550:intron
GATTGAAGCGTTTAAGCATA+GGG 0.453200 8_3:-34504684 Msa1286550:CDS
CTAAACCAGAATTCTCCATA+TGG 0.453764 8_3:+34499871 None:intergenic
CCTTTCTGGAAGAACTGAAC+AGG 0.455173 8_3:-34500394 Msa1286550:CDS
CAATATACATTGAAATCAAT+GGG 0.463169 8_3:+34498386 None:intergenic
TAGTGAGGATCATGAAATCT+AGG 0.463511 8_3:-34498663 Msa1286550:CDS
TATGCCAGCCACCCTGACTT+AGG 0.464316 8_3:-34499240 Msa1286550:CDS
TGCTTCACAAATTTGGTGAT+AGG 0.469912 8_3:-34500496 Msa1286550:CDS
TGTAGATGATAAACTTCGTA+AGG 0.470956 8_3:-34499529 Msa1286550:CDS
AGCAACTGAGATTCCTGCTC+CGG 0.471327 8_3:-34498923 Msa1286550:CDS
AGGTGATGACTTCACACATA+AGG 0.478646 8_3:-34499758 Msa1286550:CDS
CAGTCTCGGGATCCATGTAA+TGG 0.479832 8_3:+34499955 None:intergenic
ACTGGTGAAGTTATTGATAG+AGG 0.485538 8_3:-34500173 Msa1286550:CDS
AACCTCTCAGGACACAATGC+AGG 0.487006 8_3:-34499268 Msa1286550:CDS
TGAAAAGAAGATTAATAAAG+TGG 0.488330 8_3:-34499934 Msa1286550:CDS
TCAGTAGCCGAGTCCTGATC+TGG 0.488597 8_3:+34500228 None:intergenic
TTCAGTAATCAAAGTGATGC+AGG 0.488748 8_3:-34498454 Msa1286550:three_prime_UTR
AGGTTCTTACAACAGGGTCT+TGG 0.488962 8_3:-34499194 Msa1286550:CDS
TTCATTGAGTGTTGTGATTG+TGG 0.489826 8_3:-34500032 Msa1286550:CDS
TTCAGCCCGAGTTCATGAAC+AGG 0.490428 8_3:+34500281 None:intergenic
GAGGCGTCTGAATGAGGAAA+TGG 0.490900 8_3:-34499988 Msa1286550:CDS
AACTTCGTAAGGGTCTGAAA+GGG 0.499438 8_3:-34499518 Msa1286550:CDS
GGTGATGACTTCACACATAA+GGG 0.500163 8_3:-34499757 Msa1286550:CDS
CAGACTTAAAAGCAACCTTT+GGG 0.500900 8_3:-34499044 Msa1286550:CDS
TGATAGGTTGTACTCAGGAT+TGG 0.503047 8_3:-34500480 Msa1286550:CDS
AAGACTCCTGTTCATGAACT+CGG 0.516778 8_3:-34500287 Msa1286550:CDS
AGATTGAAGCGTTTAAGCAT+AGG 0.520162 8_3:-34504685 Msa1286550:CDS
TAACTTGTAGCAACAAGGAT+AGG 0.524182 8_3:+34504767 None:intergenic
TGACCTCTGTTGGATTTGCA+AGG 0.526865 8_3:+34498581 None:intergenic
AAACTTCGTAAGGGTCTGAA+AGG 0.527114 8_3:-34499519 Msa1286550:CDS
GGGAAGAAATGTCCTTAGAA+AGG 0.527346 8_3:-34498863 Msa1286550:CDS
ACAAATAGTGAAATGAACTC+TGG 0.529442 8_3:+34499549 None:intergenic
TAGGATAAAATTATTAATGG+TGG 0.529503 8_3:+34504873 None:intergenic
CGGTCCTACACTTACTGTCC+AGG 0.530670 8_3:-34499214 Msa1286550:CDS
AGCTGAGAGGCGTCTGAATG+AGG 0.532045 8_3:-34499994 Msa1286550:CDS
TGTAGACATCTCTTAAGATC+CGG 0.532519 8_3:+34498904 None:intergenic
ATAAAATTATTAATGGTGGT+GGG 0.533754 8_3:+34504877 None:intergenic
GTGCAGATATTTCCACCGGC+AGG 0.534110 8_3:+34499145 None:intergenic
GAGTATTACGTGCAACCTGC+CGG 0.536343 8_3:-34499160 Msa1286550:CDS
CTGGTGAAGTTATTGATAGA+GGG 0.538344 8_3:-34500172 Msa1286550:CDS
GGTGGATTGGAGTGTGTGTG+TGG 0.539448 8_3:+34498283 None:intergenic
TTATTCGATTTAGAAAACTT+AGG 0.541529 8_3:+34504854 None:intergenic
CGAAATATGCAGATAAGACA+TGG 0.541743 8_3:-34504649 Msa1286550:CDS
ATTGTCGTGGCAAACTAACA+TGG 0.547488 8_3:-34499073 Msa1286550:CDS
TACAGACATGAAAACCTCTC+AGG 0.548291 8_3:-34499280 Msa1286550:CDS
GGACAGGAAGCCTCAGATTG+AGG 0.548487 8_3:-34498692 Msa1286550:CDS
ATGAACTCGGGCTGAATCTG+TGG 0.550756 8_3:-34500274 Msa1286550:CDS
GGATAGAGTTAGCCATTACA+TGG 0.551642 8_3:-34499967 Msa1286550:CDS
AAGTTTCGGTCTTATTACCT+TGG 0.552048 8_3:-34499114 Msa1286550:CDS
AAGACCCTGTTGTAAGAACC+TGG 0.553834 8_3:+34499196 None:intergenic
TTTGGTGATAGGTTGTACTC+AGG 0.562234 8_3:-34500485 Msa1286550:CDS
CTTAAAAGCAACCTTTGGGA+AGG 0.563218 8_3:-34499040 Msa1286550:CDS
TGTAAACTGATAGCCACATT+CGG 0.563890 8_3:+34499323 None:intergenic
AAATCTATTGAAGCAGCTCA+AGG 0.568181 8_3:-34500422 Msa1286550:CDS
TGCTGATAAACTTAGCTACA+AGG 0.569495 8_3:-34498956 Msa1286550:CDS
AGACTCCTGTTCATGAACTC+GGG 0.571232 8_3:-34500286 Msa1286550:CDS
CATCTCTTAAGATCCGGAGC+AGG 0.571367 8_3:+34498910 None:intergenic
ACCTTGGCACACATACTGGC+AGG 0.571727 8_3:-34499098 Msa1286550:CDS
GTGAAATGAACTCTGGAGAA+CGG 0.575403 8_3:+34499556 None:intergenic
ACAGGAAACTCGGCAGCGAG+TGG 0.580836 8_3:-34498719 Msa1286550:CDS
AGCCACCCTGACTTAGGCGA+CGG 0.585562 8_3:-34499234 Msa1286550:CDS
TTAAAAGCAACCTTTGGGAA+GGG 0.586426 8_3:-34499039 Msa1286550:CDS
ACTATCGCCGCCTCAATCTG+AGG 0.586727 8_3:+34498682 None:intergenic
ATAAATATGAAGATTTGGGT+AGG 0.586773 8_3:-34499830 Msa1286550:CDS
TCCTGCCAGTATGTGTGCCA+AGG 0.587792 8_3:+34499097 None:intergenic
ATACGACAAGATTATAAACC+TGG 0.588266 8_3:-34499649 Msa1286550:CDS
GGATGATGTAGAGGTTACTC+TGG 0.590036 8_3:-34499487 Msa1286550:CDS
CATAAGGACACACATTTGGT+AGG 0.591138 8_3:+34498990 None:intergenic
CAGTTTACATCAAAATTAGA+GGG 0.591739 8_3:-34499309 Msa1286550:CDS
AACCTGAGAAACAGGAAACT+CGG 0.594659 8_3:-34498729 Msa1286550:CDS
CAAAGTGCAGATATTTCCAC+CGG 0.598009 8_3:+34499141 None:intergenic
ATTCCAACCAGATCAGGACT+CGG 0.601328 8_3:-34500235 Msa1286550:CDS
ATGCTTCTGACCCTTCCCAA+AGG 0.602178 8_3:+34499029 None:intergenic
CTTAACAATGAGACTTCTCT+CGG 0.603477 8_3:+34499353 None:intergenic
TCACCAACATCTTTACTCAT+CGG 0.604309 8_3:+34498838 None:intergenic
TAGAGATATACTGATGTACA+TGG 0.604770 8_3:-34500336 Msa1286550:CDS
ATTTATAATCATAACGCTAG+TGG 0.606333 8_3:-34504599 Msa1286550:CDS
AATTCTTGAGCATAAACAGA+TGG 0.606533 8_3:+34500110 None:intergenic
GTAGATGATAAACTTCGTAA+GGG 0.607058 8_3:-34499528 Msa1286550:CDS
CACGTAATACTCGACTGAGT+TGG 0.607158 8_3:+34499171 None:intergenic
CTGTCCAGGTTCTTACAACA+GGG 0.608852 8_3:-34499200 Msa1286550:CDS
ACCTCTCAGGACACAATGCA+GGG 0.612857 8_3:-34499267 Msa1286550:CDS
GGAAACTCGGCAGCGAGTGG+AGG 0.615424 8_3:-34498716 Msa1286550:CDS
GTTAAGCTCAAGACCGAATG+TGG 0.616613 8_3:-34499336 Msa1286550:CDS
AAAGAAGATTAATAAAGTGG+TGG 0.620743 8_3:-34499931 Msa1286550:CDS
TAGCCGAGTCCTGATCTGGT+TGG 0.622232 8_3:+34500232 None:intergenic
TAGGACCGTCGCCTAAGTCA+GGG 0.625875 8_3:+34499229 None:intergenic
AGATTGAGGCGGCGATAGTG+AGG 0.627417 8_3:-34498678 Msa1286550:CDS
GAAATGAACTCTGGAGAACG+GGG 0.628544 8_3:+34499558 None:intergenic
ATAAACAGCATCTGGCAAAG+AGG 0.630265 8_3:-34499407 Msa1286550:CDS
GTGGATTGGAGTGTGTGTGT+GGG 0.630388 8_3:+34498284 None:intergenic
GGTTGTAACTTGTAGCAACA+AGG 0.638251 8_3:+34504762 None:intergenic
GTTCAGTAGTAAACTATACA+AGG 0.638422 8_3:-34498788 Msa1286550:CDS
CAGGAAGCCTCAGATTGAGG+CGG 0.640359 8_3:-34498689 Msa1286550:CDS
GGTCAACGAGGATGATGTAG+AGG 0.645668 8_3:-34499496 Msa1286550:CDS
GAGCCGATGAGTAAAGATGT+TGG 0.646356 8_3:-34498841 Msa1286550:CDS
ACTTCGTAAGGGTCTGAAAG+GGG 0.649523 8_3:-34499517 Msa1286550:CDS
TTGTCGTGGCAAACTAACAT+GGG 0.652331 8_3:-34499072 Msa1286550:CDS
GCCCTGCATTGTGTCCTGAG+AGG 0.655976 8_3:+34499266 None:intergenic
GTGTTGTATCATAATGAACC+AGG 0.658843 8_3:-34498432 Msa1286550:three_prime_UTR
TTAGTACATAGTGAACGCAC+TGG 0.661997 8_3:-34500191 Msa1286550:CDS
TATTACGTGCAACCTGCCGG+TGG 0.663897 8_3:-34499157 Msa1286550:CDS
TTGTTCCGTCGTGTAACCGA+CGG 0.664584 8_3:-34499798 Msa1286550:CDS
TGTAGAGGTTACTCTGGACA+AGG 0.664682 8_3:-34499481 Msa1286550:CDS
AAACCCTAAATCGATCGATG+AGG 0.670174 8_3:+34504741 None:intergenic
ATCCAGTTGAGTTTGTGCAG+AGG 0.670411 8_3:-34499692 Msa1286550:CDS
AGAACCTGGACAGTAAGTGT+AGG 0.689741 8_3:+34499210 None:intergenic
GACCGTCGCCTAAGTCAGGG+TGG 0.696070 8_3:+34499232 None:intergenic
TTTCCTTGCAAATCCAACAG+AGG 0.698003 8_3:-34498584 Msa1286550:CDS
TCTATTGAAGCAGCTCAAGG+AGG 0.716304 8_3:-34500419 Msa1286550:CDS
GGGTCTGAAAGGGGTCAACG+AGG 0.729389 8_3:-34499508 Msa1286550:CDS
GTTAATGAAATATTCAAACG+AGG 0.733246 8_3:+34499587 None:intergenic
GATGAGTAAAGATGTTGGTG+AGG 0.734708 8_3:-34498836 Msa1286550:CDS
AAATGAACTCTGGAGAACGG+GGG 0.742959 8_3:+34499559 None:intergenic
ATACTGGCAGGAGATTGTCG+TGG 0.746214 8_3:-34499086 Msa1286550:CDS
AAAGACCGTCGGTTACACGA+CGG 0.749089 8_3:+34499793 None:intergenic
ATTATCTTAAGAAAGCTGAG+AGG 0.761790 8_3:-34500007 Msa1286550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAATTAAAAAAAA+AGG + chr8_3:34498754-34498773 None:intergenic 0.0%
!!! ATGTGTAATTTTAATTTTTT+TGG - chr8_3:34498839-34498858 Msa1286550:CDS 10.0%
!!! TGTGTAATTTTAATTTTTTT+GGG - chr8_3:34498840-34498859 Msa1286550:CDS 10.0%
!!! ACAAATTTTAGTTAAAAATA+AGG + chr8_3:34501890-34501909 None:intergenic 10.0%
!! TTCTAAATTGTATATAAATA+TGG + chr8_3:34502295-34502314 None:intergenic 10.0%
!! ACTTAGGATAAAATTATTAA+TGG + chr8_3:34498425-34498444 None:intergenic 15.0%
!! TACAATAAATCAAACAAAAA+TGG + chr8_3:34498815-34498834 None:intergenic 15.0%
!!! TTTTGTTTGATTTATTGTAT+TGG - chr8_3:34498816-34498835 Msa1286550:CDS 15.0%
!! ATTTATTGAGTTTATTTATG+TGG - chr8_3:34498992-34499011 Msa1286550:CDS 15.0%
!!! ATTTTCATTTTACAATTTTC+CGG - chr8_3:34499848-34499867 Msa1286550:CDS 15.0%
!!! AATTTTTAGTATAAAAAGAG+TGG - chr8_3:34501329-34501348 Msa1286550:intron 15.0%
!!! AATTTTAGTTAAAAATAAGG+CGG + chr8_3:34501887-34501906 None:intergenic 15.0%
!! TTTAAATACAAAGAAGTTAA+TGG + chr8_3:34502125-34502144 None:intergenic 15.0%
!!! ATTTATATACAATTTAGAAC+AGG - chr8_3:34502296-34502315 Msa1286550:intron 15.0%
!! AAATATAACAAAAATGCTAA+TGG - chr8_3:34503151-34503170 Msa1286550:intron 15.0%
!! ATAAAATTATTAATGGTGGT+GGG + chr8_3:34498418-34498437 None:intergenic 20.0%
!! TAGGATAAAATTATTAATGG+TGG + chr8_3:34498422-34498441 None:intergenic 20.0%
!! TTATTCGATTTAGAAAACTT+AGG + chr8_3:34498441-34498460 None:intergenic 20.0%
!!! CATGATTATGATTTATTTCT+TGG - chr8_3:34498782-34498801 Msa1286550:CDS 20.0%
!! ATTAAGCATACATTAATAAG+AGG + chr8_3:34499124-34499143 None:intergenic 20.0%
!!! GTTGATTTGAAATATTAAGA+AGG - chr8_3:34499376-34499395 Msa1286550:CDS 20.0%
!! ACTTAGCTTAAATTCATTAT+AGG - chr8_3:34499510-34499529 Msa1286550:CDS 20.0%
!!! TGTTTTTGTAAAGTTTCAAA+GGG - chr8_3:34500109-34500128 Msa1286550:CDS 20.0%
!!! AATATCTAGCTTTTAAGAAA+GGG + chr8_3:34500167-34500186 None:intergenic 20.0%
!!! TAATATCTAGCTTTTAAGAA+AGG + chr8_3:34500168-34500187 None:intergenic 20.0%
!! TTCTTAAAAGCTAGATATTA+AGG - chr8_3:34500168-34500187 Msa1286550:CDS 20.0%
!! TCTTAAAAGCTAGATATTAA+GGG - chr8_3:34500169-34500188 Msa1286550:CDS 20.0%
!! TTAATCTCTAATCTTCATAT+TGG + chr8_3:34500268-34500287 None:intergenic 20.0%
!! GTCAAAATATACATCAATTT+AGG - chr8_3:34501354-34501373 Msa1286550:intron 20.0%
!!! TTTCATGAAATATAATGGAT+TGG + chr8_3:34501383-34501402 None:intergenic 20.0%
!! GTGAATTTCATGAAATATAA+TGG + chr8_3:34501388-34501407 None:intergenic 20.0%
!! TTCTATTACAATTATTGATC+AGG - chr8_3:34501985-34502004 Msa1286550:intron 20.0%
!! ATTTATTATCTTCACTTTAG+TGG - chr8_3:34502038-34502057 Msa1286550:intron 20.0%
!!! ACATGGTTTTATTGAATATT+AGG - chr8_3:34502422-34502441 Msa1286550:intron 20.0%
!! ATAGATTTGTAAACTTTACT+TGG - chr8_3:34502530-34502549 Msa1286550:intron 20.0%
!! TAGATTTGTAAACTTTACTT+GGG - chr8_3:34502531-34502550 Msa1286550:intron 20.0%
!! TTGAATTAACAAATTGTTTC+TGG - chr8_3:34502620-34502639 Msa1286550:intron 20.0%
!! TGAAAAGAAGATTAATAAAG+TGG - chr8_3:34503358-34503377 Msa1286550:intron 20.0%
!! TGATGATAAATATGAAGATT+TGG - chr8_3:34503457-34503476 Msa1286550:intron 20.0%
!! GATGATAAATATGAAGATTT+GGG - chr8_3:34503458-34503477 Msa1286550:intron 20.0%
!! AAACTATACAAGGTTAAAAT+AGG - chr8_3:34504514-34504533 Msa1286550:intron 20.0%
!! CAATATACATTGAAATCAAT+GGG + chr8_3:34504909-34504928 None:intergenic 20.0%
!! TCAATATACATTGAAATCAA+TGG + chr8_3:34504910-34504929 None:intergenic 20.0%
! GATAAAATTATTAATGGTGG+TGG + chr8_3:34498419-34498438 None:intergenic 25.0%
! ATTTATAATCATAACGCTAG+TGG - chr8_3:34498693-34498712 Msa1286550:CDS 25.0%
!!! TTTTTTTGGGTAAGATTTAG+AGG - chr8_3:34498853-34498872 Msa1286550:CDS 25.0%
!!! GTTATAGGATTTTAGGTTTT+TGG - chr8_3:34498881-34498900 Msa1286550:CDS 25.0%
!! AAGTAATTTGTAGCATTTCT+TGG - chr8_3:34498924-34498943 Msa1286550:CDS 25.0%
!! AGTAATTTGTAGCATTTCTT+GGG - chr8_3:34498925-34498944 Msa1286550:CDS 25.0%
! TAATCATCTATAATTCGTTG+TGG - chr8_3:34499140-34499159 Msa1286550:CDS 25.0%
! GACTTGTAGATTATGTATTA+AGG - chr8_3:34499294-34499313 Msa1286550:CDS 25.0%
! ATAGGTTACTTGTGATTATA+AGG - chr8_3:34499575-34499594 Msa1286550:CDS 25.0%
! TAGGTTACTTGTGATTATAA+GGG - chr8_3:34499576-34499595 Msa1286550:CDS 25.0%
! TCTGTATTGAATAGTAGTAA+AGG + chr8_3:34499826-34499845 None:intergenic 25.0%
!!! GTGTTTTTGTAAAGTTTCAA+AGG - chr8_3:34500108-34500127 Msa1286550:CDS 25.0%
!! GTTTTTGTAAAGTTTCAAAG+GGG - chr8_3:34500110-34500129 Msa1286550:CDS 25.0%
!! TTTTTGTAAAGTTTCAAAGG+GGG - chr8_3:34500111-34500130 Msa1286550:CDS 25.0%
! GTCATACATAACTTCAAAAA+GGG + chr8_3:34500621-34500640 None:intergenic 25.0%
! TGTCATACATAACTTCAAAA+AGG + chr8_3:34500622-34500641 None:intergenic 25.0%
!!! AGAGTGTTTTTGTAATGTTA+AGG - chr8_3:34500745-34500764 Msa1286550:intron 25.0%
! GTTTATTGGAAATAGAACAT+AGG + chr8_3:34500936-34500955 None:intergenic 25.0%
! CTAATTTCAACTAAAACTCA+TGG + chr8_3:34500998-34501017 None:intergenic 25.0%
!!! CTTTTTTATTACAGAAGGAT+CGG + chr8_3:34501297-34501316 None:intergenic 25.0%
!!! TACTCCTTTTTTATTACAGA+AGG + chr8_3:34501302-34501321 None:intergenic 25.0%
! ACTATAGTAGTAGTCAATAT+TGG - chr8_3:34501406-34501425 Msa1286550:intron 25.0%
! CTTCATATGATTTCATTTAG+AGG - chr8_3:34501738-34501757 Msa1286550:intron 25.0%
! GGTAATTATAAAAATGACAC+AGG + chr8_3:34501860-34501879 None:intergenic 25.0%
!!! AGTTTTATATACCTTCATTC+CGG - chr8_3:34501952-34501971 Msa1286550:intron 25.0%
!!! GTTGCACTTTTTAATTTTAG+AGG - chr8_3:34502496-34502515 Msa1286550:intron 25.0%
! TTGTTAATTCAAGTAAAAGC+AGG + chr8_3:34502612-34502631 None:intergenic 25.0%
!! TTTAGTATGAAGTTTCCTTT+TGG - chr8_3:34502656-34502675 Msa1286550:intron 25.0%
! AATCCACATATAAACAGAAA+GGG + chr8_3:34502756-34502775 None:intergenic 25.0%
! ATTCAGAAATGCATACAATA+TGG - chr8_3:34502773-34502792 Msa1286550:intron 25.0%
!!! ACAAAAATGCTAATGGATTT+AGG - chr8_3:34503158-34503177 Msa1286550:intron 25.0%
!! ATTAATCTTCTTTTCAGTCT+CGG + chr8_3:34503354-34503373 None:intergenic 25.0%
! AAAGAAGATTAATAAAGTGG+TGG - chr8_3:34503361-34503380 Msa1286550:intron 25.0%
! ATAAATATGAAGATTTGGGT+AGG - chr8_3:34503462-34503481 Msa1286550:intron 25.0%
! GTTAATGAAATATTCAAACG+AGG + chr8_3:34503708-34503727 None:intergenic 25.0%
! TCAGTTTACATCAAAATTAG+AGG - chr8_3:34503982-34504001 Msa1286550:intron 25.0%
! CAGTTTACATCAAAATTAGA+GGG - chr8_3:34503983-34504002 Msa1286550:intron 25.0%
! ATAACGACAGAAAAATGTAT+CGG - chr8_3:34504782-34504801 Msa1286550:five_prime_UTR 25.0%
!! TTTTTGAGAAGATGATGATG+AGG + chr8_3:34498389-34498408 None:intergenic 30.0%
TCTGAAAATTCTTCTTCTTC+TGG + chr8_3:34498590-34498609 None:intergenic 30.0%
CATGTCTTATCTGCATATTT+CGG + chr8_3:34498645-34498664 None:intergenic 30.0%
!! TTAGCTTTGAAGAACTTTAC+AGG - chr8_3:34498718-34498737 Msa1286550:CDS 30.0%
TTTGAAGAACTTTACAGGTT+CGG - chr8_3:34498723-34498742 Msa1286550:CDS 30.0%
!!! AGGATTTTAGGTTTTTGGAT+TGG - chr8_3:34498886-34498905 Msa1286550:CDS 30.0%
!! TGTTTAGTTTGTGATTGAAG+TGG - chr8_3:34498966-34498985 Msa1286550:CDS 30.0%
!! AATTCCTCTTTTTCATCACA+CGG + chr8_3:34499031-34499050 None:intergenic 30.0%
ATGACAATATTAGAGAGTTG+AGG - chr8_3:34499208-34499227 Msa1286550:CDS 30.0%
ATTAAGGAAAGATCAGATGA+AGG - chr8_3:34499310-34499329 Msa1286550:CDS 30.0%
! TAATGAGTTGGATCGAAATT+CGG - chr8_3:34499409-34499428 Msa1286550:CDS 30.0%
TAGAATCTCTAGATACTGAT+AGG - chr8_3:34499557-34499576 Msa1286550:CDS 30.0%
!!! TTTTTTGACAAGCAACATCA+GGG + chr8_3:34499602-34499621 None:intergenic 30.0%
!!! TTTTTTTGACAAGCAACATC+AGG + chr8_3:34499603-34499622 None:intergenic 30.0%
! GATGTTGCTTGTCAAAAAAA+CGG - chr8_3:34499603-34499622 Msa1286550:CDS 30.0%
! ATGTTGCTTGTCAAAAAAAC+GGG - chr8_3:34499604-34499623 Msa1286550:CDS 30.0%
AGTGAGGAAAGTTCATAATT+TGG - chr8_3:34499650-34499669 Msa1286550:CDS 30.0%
AGGAAAGTTCATAATTTGGA+GGG - chr8_3:34499654-34499673 Msa1286550:CDS 30.0%
!!! ACTCTTTTTTTCACGGTTAA+TGG + chr8_3:34499687-34499706 None:intergenic 30.0%
ATTAACCGTGAAAAAAAGAG+TGG - chr8_3:34499686-34499705 Msa1286550:CDS 30.0%
TTAACCGTGAAAAAAAGAGT+GGG - chr8_3:34499687-34499706 Msa1286550:CDS 30.0%
CAGCATGTAACATACTTAAT+AGG - chr8_3:34499749-34499768 Msa1286550:CDS 30.0%
GGCTTAGAAAAATACAATCA+TGG + chr8_3:34499797-34499816 None:intergenic 30.0%
! GATTGTATTTTTCTAAGCCA+AGG - chr8_3:34499798-34499817 Msa1286550:CDS 30.0%
CTCTAATCTTCATATTGGTA+GGG + chr8_3:34500263-34500282 None:intergenic 30.0%
TCTCTAATCTTCATATTGGT+AGG + chr8_3:34500264-34500283 None:intergenic 30.0%
AGATTAGAGATTAAGAACAC+AGG - chr8_3:34500274-34500293 Msa1286550:CDS 30.0%
TAACATTGTTTGAACTCCTT+TGG - chr8_3:34500314-34500333 Msa1286550:CDS 30.0%
ACTTCTGTTTGTTTACGTAT+TGG + chr8_3:34500436-34500455 None:intergenic 30.0%
AATACGTAAACAAACAGAAG+TGG - chr8_3:34500435-34500454 Msa1286550:CDS 30.0%
AACAAACAGAAGTGGTTAAT+AGG - chr8_3:34500443-34500462 Msa1286550:CDS 30.0%
TTAATGCTCAAGTACATATG+AGG - chr8_3:34500688-34500707 Msa1286550:intron 30.0%
! ATTATTGATTGTTGCTTGTG+TGG + chr8_3:34500771-34500790 None:intergenic 30.0%
AGCAACAATCAATAATCCAA+AGG - chr8_3:34500775-34500794 Msa1286550:intron 30.0%
!! CCATCTTTTGATTAATCCTT+TGG + chr8_3:34500794-34500813 None:intergenic 30.0%
CCAAAGGATTAATCAAAAGA+TGG - chr8_3:34500791-34500810 Msa1286550:intron 30.0%
TTGGAAATAGAACATAGGAA+AGG + chr8_3:34500931-34500950 None:intergenic 30.0%
!! TTGGATATCTTCTAGCTTAT+GGG + chr8_3:34501138-34501157 None:intergenic 30.0%
!! TTTGGATATCTTCTAGCTTA+TGG + chr8_3:34501139-34501158 None:intergenic 30.0%
CGATCCTTCTGTAATAAAAA+AGG - chr8_3:34501295-34501314 Msa1286550:intron 30.0%
! AAACAGTGAAAAGTGACTTT+TGG + chr8_3:34501771-34501790 None:intergenic 30.0%
GTTCCTTTCTATATTATGCT+TGG - chr8_3:34501910-34501929 Msa1286550:intron 30.0%
CTACCAAGCATAATATAGAA+AGG + chr8_3:34501916-34501935 None:intergenic 30.0%
GAGAGATAATAAAGGAAACT+TGG + chr8_3:34502580-34502599 None:intergenic 30.0%
CAATCAAGGAGAGATAATAA+AGG + chr8_3:34502588-34502607 None:intergenic 30.0%
!! ACAAATTGTTTCTGGCATAT+TGG - chr8_3:34502628-34502647 Msa1286550:intron 30.0%
ATCCACATATAAACAGAAAG+GGG + chr8_3:34502755-34502774 None:intergenic 30.0%
GAATCCACATATAAACAGAA+AGG + chr8_3:34502757-34502776 None:intergenic 30.0%
AATATGGTGCTTCACAAATT+TGG - chr8_3:34502789-34502808 Msa1286550:intron 30.0%
TAGAGATATACTGATGTACA+TGG - chr8_3:34502956-34502975 Msa1286550:intron 30.0%
AATTCTTGAGCATAAACAGA+TGG + chr8_3:34503185-34503204 None:intergenic 30.0%
ACAACACTCAATGAATCTTT+GGG + chr8_3:34503255-34503274 None:intergenic 30.0%
ATTATCTTAAGAAAGCTGAG+AGG - chr8_3:34503285-34503304 Msa1286550:intron 30.0%
! TTAATCTTCTTTTCAGTCTC+GGG + chr8_3:34503353-34503372 None:intergenic 30.0%
TTAATCCATATGGAGAATTC+TGG - chr8_3:34503416-34503435 Msa1286550:intron 30.0%
ATACGACAAGATTATAAACC+TGG - chr8_3:34503643-34503662 Msa1286550:intron 30.0%
ACAAATAGTGAAATGAACTC+TGG + chr8_3:34503746-34503765 None:intergenic 30.0%
TGTAGATGATAAACTTCGTA+AGG - chr8_3:34503763-34503782 Msa1286550:intron 30.0%
GTAGATGATAAACTTCGTAA+GGG - chr8_3:34503764-34503783 Msa1286550:intron 30.0%
! CATCTTTTTCTTGCAAGTAT+CGG + chr8_3:34503850-34503869 None:intergenic 30.0%
! GAAGTATTATAAACAGCATC+TGG - chr8_3:34503877-34503896 Msa1286550:intron 30.0%
! CAGCATTATTGAAAAGCATA+AGG + chr8_3:34504321-34504340 None:intergenic 30.0%
TAAGAGATGTCTACAATCAT+TGG - chr8_3:34504396-34504415 Msa1286550:intron 30.0%
!! ACAATCATTGGCTTTAGTTA+AGG - chr8_3:34504408-34504427 Msa1286550:intron 30.0%
!! CAATCATTGGCTTTAGTTAA+GGG - chr8_3:34504409-34504428 Msa1286550:intron 30.0%
GTTCAGTAGTAAACTATACA+AGG - chr8_3:34504504-34504523 Msa1286550:intron 30.0%
! TTAAAAGGCAAATTTTCACC+TGG + chr8_3:34504881-34504900 None:intergenic 30.0%
AATCAATGGGTCTACTTAAA+AGG + chr8_3:34504896-34504915 None:intergenic 30.0%
AAAACATCGCAACAACAAAT+AGG + chr8_3:34504941-34504960 None:intergenic 30.0%
CAAAAAGACATCAGTAAGTT+TGG + chr8_3:34504983-34505002 None:intergenic 30.0%
!! TGTGTTGTTTGCTTCAGATT+TGG + chr8_3:34498345-34498364 None:intergenic 35.0%
! TAACTTGTAGCAACAAGGAT+AGG + chr8_3:34498528-34498547 None:intergenic 35.0%
! AGATTGAAGCGTTTAAGCAT+AGG - chr8_3:34498607-34498626 Msa1286550:CDS 35.0%
! GATTGAAGCGTTTAAGCATA+GGG - chr8_3:34498608-34498627 Msa1286550:CDS 35.0%
GTTTAAGCATAGGGTTGTTA+TGG - chr8_3:34498617-34498636 Msa1286550:CDS 35.0%
CGAAATATGCAGATAAGACA+TGG - chr8_3:34498643-34498662 Msa1286550:CDS 35.0%
! GATTTAGAGGTGATGGTTAT+AGG - chr8_3:34498866-34498885 Msa1286550:CDS 35.0%
!! GGTGATGGTTATAGGATTTT+AGG - chr8_3:34498874-34498893 Msa1286550:CDS 35.0%
AAGGATAGTCAACTCATTAG+AGG - chr8_3:34499329-34499348 Msa1286550:CDS 35.0%
! TGTTGCTTGTCAAAAAAACG+GGG - chr8_3:34499605-34499624 Msa1286550:CDS 35.0%
GAGGAAAGTTCATAATTTGG+AGG - chr8_3:34499653-34499672 Msa1286550:CDS 35.0%
TAACCGTGAAAAAAAGAGTG+GGG - chr8_3:34499688-34499707 Msa1286550:CDS 35.0%
!! GAGAAAATTAGGAAGTGCTA+AGG - chr8_3:34499712-34499731 Msa1286550:CDS 35.0%
! TTTTCCGGAGTTCTATCAAT+TGG - chr8_3:34499863-34499882 Msa1286550:CDS 35.0%
TGAACCAATTGATAGAACTC+CGG + chr8_3:34499870-34499889 None:intergenic 35.0%
TCAAACCTTCCAAATACTGT+TGG - chr8_3:34499887-34499906 Msa1286550:CDS 35.0%
CAAACCTTCCAAATACTGTT+GGG - chr8_3:34499888-34499907 Msa1286550:CDS 35.0%
TTTGAACACCCAACAGTATT+TGG + chr8_3:34499899-34499918 None:intergenic 35.0%
TCAACTCTGTTTGTCATCTT+TGG + chr8_3:34499928-34499947 None:intergenic 35.0%
! GACAAACAGAGTTGATTCAT+TGG - chr8_3:34499933-34499952 Msa1286550:CDS 35.0%
TGACAAAATCCTCCAAGAAA+GGG + chr8_3:34499969-34499988 None:intergenic 35.0%
TTGACAAAATCCTCCAAGAA+AGG + chr8_3:34499970-34499989 None:intergenic 35.0%
!! TAAGAAGCTTGCTATACTAC+AGG - chr8_3:34500056-34500075 Msa1286550:CDS 35.0%
TGGAACATTTAAGTGTGACT+TGG + chr8_3:34500202-34500221 None:intergenic 35.0%
TTAAATGTTCCATCTCGATG+TGG - chr8_3:34500210-34500229 Msa1286550:CDS 35.0%
CTTCATATTGGTAGGGATTT+GGG + chr8_3:34500256-34500275 None:intergenic 35.0%
TCTTCATATTGGTAGGGATT+TGG + chr8_3:34500257-34500276 None:intergenic 35.0%
TTAAGAACACAGGTTCCATA+TGG - chr8_3:34500284-34500303 Msa1286550:CDS 35.0%
GGAGTTCAAACAATGTTAGA+AGG + chr8_3:34500312-34500331 None:intergenic 35.0%
! TTTGAACTCCTTTGGAAGAA+AGG - chr8_3:34500322-34500341 Msa1286550:CDS 35.0%
AAACATGGGACTCATACAAT+TGG - chr8_3:34500350-34500369 Msa1286550:CDS 35.0%
! GCAGGAACTATTCAGATTTT+GGG - chr8_3:34500372-34500391 Msa1286550:CDS 35.0%
! CAGGAACTATTCAGATTTTG+GGG - chr8_3:34500373-34500392 Msa1286550:CDS 35.0%
AGAAGTGGTTAATAGGTGTT+TGG - chr8_3:34500450-34500469 Msa1286550:CDS 35.0%
! TCATCCACATCATTCTAGAA+GGG + chr8_3:34500494-34500513 None:intergenic 35.0%
CTTATGTTGTTCTGTGATGA+AGG + chr8_3:34500520-34500539 None:intergenic 35.0%
AACATAAGAGTTGACATGAG+TGG - chr8_3:34500532-34500551 Msa1286550:intron 35.0%
!! TTGACATGAGTGGTTGTTTT+GGG - chr8_3:34500542-34500561 Msa1286550:intron 35.0%
!! TTCAAAAAGGGTGTTTCTCA+TGG + chr8_3:34500609-34500628 None:intergenic 35.0%
ATGTACTTGAGCATTAACGT+TGG + chr8_3:34500685-34500704 None:intergenic 35.0%
!!! GGTCCATTTTGATTTTTGAG+TGG - chr8_3:34500828-34500847 Msa1286550:intron 35.0%
CCACCACTCAAAAATCAAAA+TGG + chr8_3:34500834-34500853 None:intergenic 35.0%
!!! CCATTTTGATTTTTGAGTGG+TGG - chr8_3:34500831-34500850 Msa1286550:intron 35.0%
!! TTTTGAGTGGTGGAGAAATA+TGG - chr8_3:34500841-34500860 Msa1286550:intron 35.0%
GTGCTTCTTGAGAAGTTTAT+TGG + chr8_3:34500950-34500969 None:intergenic 35.0%
!! AACTTCTCAAGAAGCACTTA+TGG - chr8_3:34500953-34500972 Msa1286550:intron 35.0%
AAGCTAGAAGATATCCAAAC+TGG - chr8_3:34501140-34501159 Msa1286550:intron 35.0%
TCAGCATTTGACAATGTTCA+TGG - chr8_3:34501245-34501264 Msa1286550:intron 35.0%
CAGCATTTGACAATGTTCAT+GGG - chr8_3:34501246-34501265 Msa1286550:intron 35.0%
AGCATTTGACAATGTTCATG+GGG - chr8_3:34501247-34501266 Msa1286550:intron 35.0%
GAGATAACAAGAATGGTGAT+GGG + chr8_3:34501713-34501732 None:intergenic 35.0%
AGAGATAACAAGAATGGTGA+TGG + chr8_3:34501714-34501733 None:intergenic 35.0%
AGACAGAGAGATAACAAGAA+TGG + chr8_3:34501720-34501739 None:intergenic 35.0%
ACAGGTGATCAGGAAAATAA+AGG + chr8_3:34501842-34501861 None:intergenic 35.0%
TAAAAATGACACAGGTGATC+AGG + chr8_3:34501852-34501871 None:intergenic 35.0%
AGTTAAAAATAAGGCGGTGA+TGG + chr8_3:34501881-34501900 None:intergenic 35.0%
GTAATAGAACAACTGCATAC+CGG + chr8_3:34501974-34501993 None:intergenic 35.0%
ATGGTGAATACAGAACAAAC+TGG + chr8_3:34502106-34502125 None:intergenic 35.0%
CTTTGCTCAAACATCTTAAG+TGG + chr8_3:34502217-34502236 None:intergenic 35.0%
! AGAGCTGATTCTATTTCCTT+TGG - chr8_3:34502326-34502345 Msa1286550:intron 35.0%
ACGTTGTTTAATGTTCCACT+TGG + chr8_3:34502358-34502377 None:intergenic 35.0%
TCAGTATGTGTGACAAAACT+TGG - chr8_3:34502465-34502484 Msa1286550:intron 35.0%
AAGTAAAAGCAGGTCAATCA+AGG + chr8_3:34502602-34502621 None:intergenic 35.0%
! TCCTTTTGGACATTTACACA+CGG - chr8_3:34502670-34502689 Msa1286550:intron 35.0%
TCCACATATAAACAGAAAGG+GGG + chr8_3:34502754-34502773 None:intergenic 35.0%
! TGCTTCACAAATTTGGTGAT+AGG - chr8_3:34502796-34502815 Msa1286550:intron 35.0%
AAATCTATTGAAGCAGCTCA+AGG - chr8_3:34502870-34502889 Msa1286550:intron 35.0%
! TTCATGAACAGGAGTCTTTT+TGG + chr8_3:34503003-34503022 None:intergenic 35.0%
TCATTTATTCCAACCAGATC+AGG - chr8_3:34503051-34503070 Msa1286550:intron 35.0%
ACTGGTGAAGTTATTGATAG+AGG - chr8_3:34503119-34503138 Msa1286550:intron 35.0%
CTGGTGAAGTTATTGATAGA+GGG - chr8_3:34503120-34503139 Msa1286550:intron 35.0%
!! AGTTTCAGCTGAGTTTTATC+AGG - chr8_3:34503223-34503242 Msa1286550:intron 35.0%
CACAACACTCAATGAATCTT+TGG + chr8_3:34503256-34503275 None:intergenic 35.0%
! TTCATTGAGTGTTGTGATTG+TGG - chr8_3:34503260-34503279 Msa1286550:intron 35.0%
CATGCTCAGATTAATCCATA+TGG - chr8_3:34503406-34503425 Msa1286550:intron 35.0%
CTAAACCAGAATTCTCCATA+TGG + chr8_3:34503424-34503443 None:intergenic 35.0%
! TCGTATTTTCAAAAGACCGT+CGG + chr8_3:34503513-34503532 None:intergenic 35.0%
TACTGATCCTGAAAGATTGA+AGG - chr8_3:34503577-34503596 Msa1286550:intron 35.0%
ACTTGTCATTATTGAATGCC+AGG + chr8_3:34503664-34503683 None:intergenic 35.0%
CTTAACAATGAGACTTCTCT+CGG + chr8_3:34503942-34503961 None:intergenic 35.0%
TGTAAACTGATAGCCACATT+CGG + chr8_3:34503972-34503991 None:intergenic 35.0%
!! AAGTTTCGGTCTTATTACCT+TGG - chr8_3:34504178-34504197 Msa1286550:intron 35.0%
CAGACTTAAAAGCAACCTTT+GGG - chr8_3:34504248-34504267 Msa1286550:intron 35.0%
! TTAAAAGCAACCTTTGGGAA+GGG - chr8_3:34504253-34504272 Msa1286550:intron 35.0%
AAAGCATAAGGACACACATT+TGG + chr8_3:34504309-34504328 None:intergenic 35.0%
TGCTGATAAACTTAGCTACA+AGG - chr8_3:34504336-34504355 Msa1286550:intron 35.0%
TGTAGACATCTCTTAAGATC+CGG + chr8_3:34504391-34504410 None:intergenic 35.0%
TCACCAACATCTTTACTCAT+CGG + chr8_3:34504457-34504476 None:intergenic 35.0%
TAGTGAGGATCATGAAATCT+AGG - chr8_3:34504629-34504648 Msa1286550:CDS 35.0%
TTCAGTAATCAAAGTGATGC+AGG - chr8_3:34504838-34504857 Msa1286550:five_prime_UTR 35.0%
GTGTTGTATCATAATGAACC+AGG - chr8_3:34504860-34504879 Msa1286550:five_prime_UTR 35.0%
! GGTTGTAACTTGTAGCAACA+AGG + chr8_3:34498533-34498552 None:intergenic 40.0%
! ACAACCTCATCGATCGATTT+AGG - chr8_3:34498547-34498566 Msa1286550:CDS 40.0%
! CAACCTCATCGATCGATTTA+GGG - chr8_3:34498548-34498567 Msa1286550:CDS 40.0%
AAACCCTAAATCGATCGATG+AGG + chr8_3:34498554-34498573 None:intergenic 40.0%
TGGGTAAGATTTAGAGGTGA+TGG - chr8_3:34498859-34498878 Msa1286550:CDS 40.0%
GATACCGTGTGATGAAAAAG+AGG - chr8_3:34499024-34499043 Msa1286550:CDS 40.0%
ATTCGTTGTGGATGTTGTGT+TGG - chr8_3:34499152-34499171 Msa1286550:CDS 40.0%
ACCTATAGTAGAAACTGTCG+TGG - chr8_3:34499235-34499254 Msa1286550:CDS 40.0%
TCCACGACAGTTTCTACTAT+AGG + chr8_3:34499239-34499258 None:intergenic 40.0%
TAGAAACTGTCGTGGACAAT+AGG - chr8_3:34499243-34499262 Msa1286550:CDS 40.0%
GGATCTCGAGATTAATGAGT+TGG - chr8_3:34499397-34499416 Msa1286550:CDS 40.0%
AAACCTTATCCCACTAAGTG+TGG + chr8_3:34499474-34499493 None:intergenic 40.0%
ACACTTAGTGGGATAAGGTT+TGG - chr8_3:34499473-34499492 Msa1286550:CDS 40.0%
GTTGCTTGTCAAAAAAACGG+GGG - chr8_3:34499606-34499625 Msa1286550:CDS 40.0%
TTGCTTGTCAAAAAAACGGG+GGG - chr8_3:34499607-34499626 Msa1286550:CDS 40.0%
ACTCTCTCAGATTCAACATC+AGG + chr8_3:34499633-34499652 None:intergenic 40.0%
ATGTTGAATCTGAGAGAGTG+AGG - chr8_3:34499634-34499653 Msa1286550:CDS 40.0%
!!! TCTCCCCACTCTTTTTTTCA+CGG + chr8_3:34499694-34499713 None:intergenic 40.0%
AAGAGTGGGGAGAGAAAATT+AGG - chr8_3:34499701-34499720 Msa1286550:CDS 40.0%
TACATGCTGCAAGTAACTAG+CGG + chr8_3:34499738-34499757 None:intergenic 40.0%
GAATAGTAGTAAAGGAGCCT+TGG + chr8_3:34499818-34499837 None:intergenic 40.0%
AACACCCAACAGTATTTGGA+AGG + chr8_3:34499895-34499914 None:intergenic 40.0%
! GGATTTTGTCAAACTCTCGT+TGG - chr8_3:34499978-34499997 Msa1286550:CDS 40.0%
AGATGTAGAGACAGAGATGT+TGG - chr8_3:34500028-34500047 Msa1286550:CDS 40.0%
GATGTAGAGACAGAGATGTT+GGG - chr8_3:34500029-34500048 Msa1286550:CDS 40.0%
ATGTAGAGACAGAGATGTTG+GGG - chr8_3:34500030-34500049 Msa1286550:CDS 40.0%
TACTACAGGTTCATGTTCTC+AGG - chr8_3:34500070-34500089 Msa1286550:CDS 40.0%
ACTACAGGTTCATGTTCTCA+GGG - chr8_3:34500071-34500090 Msa1286550:CDS 40.0%
GTAGGGATTTGGGTATTATG+GGG + chr8_3:34500246-34500265 None:intergenic 40.0%
GGTAGGGATTTGGGTATTAT+GGG + chr8_3:34500247-34500266 None:intergenic 40.0%
TGGTAGGGATTTGGGTATTA+TGG + chr8_3:34500248-34500267 None:intergenic 40.0%
CAATGTTAGAAGGAGCCATA+TGG + chr8_3:34500302-34500321 None:intergenic 40.0%
! AACTCCTTTGGAAGAAAGGA+GGG - chr8_3:34500326-34500345 Msa1286550:CDS 40.0%
! GGCAGGAACTATTCAGATTT+TGG - chr8_3:34500371-34500390 Msa1286550:CDS 40.0%
AGTGGTTAATAGGTGTTTGG+AGG - chr8_3:34500453-34500472 Msa1286550:CDS 40.0%
!! TTTCCCCTTCTAGAATGATG+TGG - chr8_3:34500487-34500506 Msa1286550:CDS 40.0%
! CATCCACATCATTCTAGAAG+GGG + chr8_3:34500493-34500512 None:intergenic 40.0%
CTCATCCACATCATTCTAGA+AGG + chr8_3:34500495-34500514 None:intergenic 40.0%
! GTTGACATGAGTGGTTGTTT+TGG - chr8_3:34500541-34500560 Msa1286550:intron 40.0%
ATGCTCAAGTACATATGAGG+AGG - chr8_3:34500691-34500710 Msa1286550:intron 40.0%
CAGATAAATGCTGGAGTTTG+AGG - chr8_3:34500718-34500737 Msa1286550:intron 40.0%
AAGATGGCTGAGAGTTACTA+TGG - chr8_3:34500807-34500826 Msa1286550:intron 40.0%
CGTTATATCAAGGTCCAGTT+TGG + chr8_3:34501157-34501176 None:intergenic 40.0%
AACTGGACCTTGATATAACG+AGG - chr8_3:34501157-34501176 Msa1286550:intron 40.0%
CTGTTTGCCTCGTTATATCA+AGG + chr8_3:34501167-34501186 None:intergenic 40.0%
AGTAGTAGTCAATATTGGCC+AGG - chr8_3:34501411-34501430 Msa1286550:intron 40.0%
TGGAGCATATAGCTCAGTAA+GGG + chr8_3:34501445-34501464 None:intergenic 40.0%
TTGGAGCATATAGCTCAGTA+AGG + chr8_3:34501446-34501465 None:intergenic 40.0%
ATATGCTCCAAGTGACTCTT+AGG - chr8_3:34501455-34501474 Msa1286550:intron 40.0%
GTCCTTACGTCCATGAATAA+TGG - chr8_3:34501519-34501538 Msa1286550:intron 40.0%
AGCCATTATTCATGGACGTA+AGG + chr8_3:34501524-34501543 None:intergenic 40.0%
GCTGCTATAGCCATTATTCA+TGG + chr8_3:34501532-34501551 None:intergenic 40.0%
GATCCTGAGCAAACTTATTC+TGG - chr8_3:34501553-34501572 Msa1286550:intron 40.0%
GGGTTTGACTGATGACAAAT+GGG + chr8_3:34501597-34501616 None:intergenic 40.0%
CTGTAAATATCAACAGCGAG+GGG + chr8_3:34501617-34501636 None:intergenic 40.0%
GCTGTAAATATCAACAGCGA+GGG + chr8_3:34501618-34501637 None:intergenic 40.0%
TGCTGTAAATATCAACAGCG+AGG + chr8_3:34501619-34501638 None:intergenic 40.0%
CAAGAAGATTGAAGGACGAA+AGG + chr8_3:34501688-34501707 None:intergenic 40.0%
! GAGGGGTTATAGATCGTTTT+GGG + chr8_3:34502075-34502094 None:intergenic 40.0%
! AGAGGGGTTATAGATCGTTT+TGG + chr8_3:34502076-34502095 None:intergenic 40.0%
AAACGATCTATAACCCCTCT+AGG - chr8_3:34502076-34502095 Msa1286550:intron 40.0%
AACAAACTGGTCAACCTAGA+GGG + chr8_3:34502093-34502112 None:intergenic 40.0%
! TTCCTTTGGTTTAAGCCAAG+TGG - chr8_3:34502340-34502359 Msa1286550:intron 40.0%
TTCCACTTGGCTTAAACCAA+AGG + chr8_3:34502345-34502364 None:intergenic 40.0%
TGTTTGAGCAGCATTGTAAC+TGG + chr8_3:34502405-34502424 None:intergenic 40.0%
GTTACAATGCTGCTCAAACA+TGG - chr8_3:34502405-34502424 Msa1286550:intron 40.0%
GTATGTGTGACAAAACTTGG+TGG - chr8_3:34502468-34502487 Msa1286550:intron 40.0%
TCCGTGTGTAAATGTCCAAA+AGG + chr8_3:34502674-34502693 None:intergenic 40.0%
! TTTTGGACATTTACACACGG+AGG - chr8_3:34502673-34502692 Msa1286550:intron 40.0%
TCCCCCTTTCTGTTTATATG+TGG - chr8_3:34502750-34502769 Msa1286550:intron 40.0%
! TTTGGTGATAGGTTGTACTC+AGG - chr8_3:34502807-34502826 Msa1286550:intron 40.0%
TGATAGGTTGTACTCAGGAT+TGG - chr8_3:34502812-34502831 Msa1286550:intron 40.0%
TGGAAGAACTGAACAGGAAA+TGG - chr8_3:34502904-34502923 Msa1286550:intron 40.0%
AAGACTCCTGTTCATGAACT+CGG - chr8_3:34503005-34503024 Msa1286550:intron 40.0%
TTAGTACATAGTGAACGCAC+TGG - chr8_3:34503101-34503120 Msa1286550:intron 40.0%
GGATAGAGTTAGCCATTACA+TGG - chr8_3:34503325-34503344 Msa1286550:intron 40.0%
!! CGGTCTTTTGAAAATACGAG+AGG - chr8_3:34503514-34503533 Msa1286550:intron 40.0%
AGGTGATGACTTCACACATA+AGG - chr8_3:34503534-34503553 Msa1286550:intron 40.0%
GGTGATGACTTCACACATAA+GGG - chr8_3:34503535-34503554 Msa1286550:intron 40.0%
ACTTCACACATAAGGGAATC+TGG - chr8_3:34503542-34503561 Msa1286550:intron 40.0%
ACTGGATCCTTCAATCTTTC+AGG + chr8_3:34503587-34503606 None:intergenic 40.0%
! ACGAGGAATTCAAAGCATTC+TGG + chr8_3:34503691-34503710 None:intergenic 40.0%
! TGAAATGAACTCTGGAGAAC+GGG + chr8_3:34503738-34503757 None:intergenic 40.0%
! GTGAAATGAACTCTGGAGAA+CGG + chr8_3:34503739-34503758 None:intergenic 40.0%
AAACTTCGTAAGGGTCTGAA+AGG - chr8_3:34503773-34503792 Msa1286550:intron 40.0%
AACTTCGTAAGGGTCTGAAA+GGG - chr8_3:34503774-34503793 Msa1286550:intron 40.0%
ATAAACAGCATCTGGCAAAG+AGG - chr8_3:34503885-34503904 Msa1286550:intron 40.0%
! GAGGCTTTTGTCTGGAAAAA+CGG - chr8_3:34503904-34503923 Msa1286550:intron 40.0%
TACAGACATGAAAACCTCTC+AGG - chr8_3:34504012-34504031 Msa1286550:intron 40.0%
CAAAGTGCAGATATTTCCAC+CGG + chr8_3:34504154-34504173 None:intergenic 40.0%
TATTACCTTGGCACACATAC+TGG - chr8_3:34504190-34504209 Msa1286550:intron 40.0%
ATTGTCGTGGCAAACTAACA+TGG - chr8_3:34504219-34504238 Msa1286550:intron 40.0%
TTGTCGTGGCAAACTAACAT+GGG - chr8_3:34504220-34504239 Msa1286550:intron 40.0%
GCAGACTTAAAAGCAACCTT+TGG - chr8_3:34504247-34504266 Msa1286550:intron 40.0%
! CTTAAAAGCAACCTTTGGGA+AGG - chr8_3:34504252-34504271 Msa1286550:intron 40.0%
CATAAGGACACACATTTGGT+AGG + chr8_3:34504305-34504324 None:intergenic 40.0%
GGGAAGAAATGTCCTTAGAA+AGG - chr8_3:34504429-34504448 Msa1286550:intron 40.0%
GATGAGTAAAGATGTTGGTG+AGG - chr8_3:34504456-34504475 Msa1286550:intron 40.0%
AGGAACTGTAGTTGCACAAA+AGG - chr8_3:34504534-34504553 Msa1286550:intron 40.0%
! AGTTTCCTGTTTCTCAGGTT+CGG + chr8_3:34504563-34504582 None:intergenic 40.0%
AACCTGAGAAACAGGAAACT+CGG - chr8_3:34504563-34504582 Msa1286550:intron 40.0%
TTTCCTTGCAAATCCAACAG+AGG - chr8_3:34504708-34504727 Msa1286550:CDS 40.0%
! TCTCATTGAGCGAGACTTTT+TGG - chr8_3:34504750-34504769 Msa1286550:five_prime_UTR 40.0%
TGGATGTTGTGTTGGATGTG+TGG - chr8_3:34499160-34499179 Msa1286550:CDS 45.0%
GGATGTGTGGTTAGACTAGA+TGG - chr8_3:34499173-34499192 Msa1286550:CDS 45.0%
ACAATAGGCTTAGGTGGTCT+GGG - chr8_3:34499258-34499277 Msa1286550:CDS 45.0%
ATTAGAGGCAGAGCAACTAG+TGG - chr8_3:34499344-34499363 Msa1286550:CDS 45.0%
TTAGAGGCAGAGCAACTAGT+GGG - chr8_3:34499345-34499364 Msa1286550:CDS 45.0%
CTTATCCCACTAAGTGTGGT+CGG + chr8_3:34499470-34499489 None:intergenic 45.0%
! GAACTCCTTTGGAAGAAAGG+AGG - chr8_3:34500325-34500344 Msa1286550:CDS 45.0%
! ACTCCTTTGGAAGAAAGGAG+GGG - chr8_3:34500327-34500346 Msa1286550:CDS 45.0%
TTTCCCCTCCTTTCTTCCAA+AGG + chr8_3:34500333-34500352 None:intergenic 45.0%
GAAGAAAGGAGGGGAAACAT+GGG - chr8_3:34500336-34500355 Msa1286550:CDS 45.0%
ATGGGACTCATACAATTGGC+AGG - chr8_3:34500354-34500373 Msa1286550:CDS 45.0%
!! GGAGGTGTTCAGATAAATGC+TGG - chr8_3:34500709-34500728 Msa1286550:intron 45.0%
! TAAATGCTGGAGTTTGAGGC+TGG - chr8_3:34500722-34500741 Msa1286550:intron 45.0%
ACAATGTTCATGGGGCTTGA+TGG - chr8_3:34501255-34501274 Msa1286550:intron 45.0%
CAATGTTCATGGGGCTTGAT+GGG - chr8_3:34501256-34501275 Msa1286550:intron 45.0%
AATGTTCATGGGGCTTGATG+GGG - chr8_3:34501257-34501276 Msa1286550:intron 45.0%
AGTAGTCAATATTGGCCAGG+AGG - chr8_3:34501414-34501433 Msa1286550:intron 45.0%
ATGCTCTCCTAAGAGTCACT+TGG + chr8_3:34501465-34501484 None:intergenic 45.0%
!! AGGAGAGCATTTCAGCATTG+CGG - chr8_3:34501475-34501494 Msa1286550:intron 45.0%
GCATGGAGAACCACAAATGT+GGG - chr8_3:34501497-34501516 Msa1286550:intron 45.0%
GGGGTTTGACTGATGACAAA+TGG + chr8_3:34501598-34501617 None:intergenic 45.0%
AACTTGTGTGCACAACGCAA+AGG + chr8_3:34501664-34501683 None:intergenic 45.0%
GATGGGCACAAGAAGATTGA+AGG + chr8_3:34501696-34501715 None:intergenic 45.0%
ACAACTGCATACCGGAATGA+AGG + chr8_3:34501966-34501985 None:intergenic 45.0%
ACAAACTGGTCAACCTAGAG+GGG + chr8_3:34502092-34502111 None:intergenic 45.0%
GAACAAACTGGTCAACCTAG+AGG + chr8_3:34502094-34502113 None:intergenic 45.0%
TCTATTGAAGCAGCTCAAGG+AGG - chr8_3:34502873-34502892 Msa1286550:intron 45.0%
CCTGTTCAGTTCTTCCAGAA+AGG + chr8_3:34502901-34502920 None:intergenic 45.0%
! CCTTTCTGGAAGAACTGAAC+AGG - chr8_3:34502898-34502917 Msa1286550:intron 45.0%
!! ACAGGAGTCTTTTTGGCACT+TGG + chr8_3:34502996-34503015 None:intergenic 45.0%
AGACTCCTGTTCATGAACTC+GGG - chr8_3:34503006-34503025 Msa1286550:intron 45.0%
ATTCCAACCAGATCAGGACT+CGG - chr8_3:34503057-34503076 Msa1286550:intron 45.0%
ATCCAGTTGAGTTTGTGCAG+AGG - chr8_3:34503600-34503619 Msa1286550:intron 45.0%
! AAATGAACTCTGGAGAACGG+GGG + chr8_3:34503736-34503755 None:intergenic 45.0%
! GAAATGAACTCTGGAGAACG+GGG + chr8_3:34503737-34503756 None:intergenic 45.0%
ACTTCGTAAGGGTCTGAAAG+GGG - chr8_3:34503775-34503794 Msa1286550:intron 45.0%
GGATGATGTAGAGGTTACTC+TGG - chr8_3:34503805-34503824 Msa1286550:intron 45.0%
TGTAGAGGTTACTCTGGACA+AGG - chr8_3:34503811-34503830 Msa1286550:intron 45.0%
GTTAAGCTCAAGACCGAATG+TGG - chr8_3:34503956-34503975 Msa1286550:intron 45.0%
AGAACCTGGACAGTAAGTGT+AGG + chr8_3:34504085-34504104 None:intergenic 45.0%
ACTGTCCAGGTTCTTACAAC+AGG - chr8_3:34504091-34504110 Msa1286550:intron 45.0%
CTGTCCAGGTTCTTACAACA+GGG - chr8_3:34504092-34504111 Msa1286550:intron 45.0%
AAGACCCTGTTGTAAGAACC+TGG + chr8_3:34504099-34504118 None:intergenic 45.0%
AGGTTCTTACAACAGGGTCT+TGG - chr8_3:34504098-34504117 Msa1286550:intron 45.0%
CACGTAATACTCGACTGAGT+TGG + chr8_3:34504124-34504143 None:intergenic 45.0%
CTGCACTTTGCGAGAAGTTT+CGG - chr8_3:34504164-34504183 Msa1286550:intron 45.0%
!! TACTCATCGGCTCCTTTCTA+AGG + chr8_3:34504444-34504463 None:intergenic 45.0%
GAGCCGATGAGTAAAGATGT+TGG - chr8_3:34504451-34504470 Msa1286550:intron 45.0%
TGACCTCTGTTGGATTTGCA+AGG + chr8_3:34504714-34504733 None:intergenic 45.0%
ATGCGTTTCTTGACCTCTGT+TGG + chr8_3:34504724-34504743 None:intergenic 45.0%
!! TTGAGCGAGACTTTTTGGAG+AGG - chr8_3:34504755-34504774 Msa1286550:five_prime_UTR 45.0%
!! TGAGCGAGACTTTTTGGAGA+GGG - chr8_3:34504756-34504775 Msa1286550:five_prime_UTR 45.0%
CTGTCGTGGACAATAGGCTT+AGG - chr8_3:34499249-34499268 Msa1286550:CDS 50.0%
TCGTGGACAATAGGCTTAGG+TGG - chr8_3:34499252-34499271 Msa1286550:CDS 50.0%
GACAATAGGCTTAGGTGGTC+TGG - chr8_3:34499257-34499276 Msa1286550:CDS 50.0%
ATGTAGCCGACCACACTTAG+TGG - chr8_3:34499461-34499480 Msa1286550:CDS 50.0%
TGTAGCCGACCACACTTAGT+GGG - chr8_3:34499462-34499481 Msa1286550:CDS 50.0%
CGACCACACTTAGTGGGATA+AGG - chr8_3:34499468-34499487 Msa1286550:CDS 50.0%
GGAAGCTAAGCTCCCTTTCT+TGG - chr8_3:34499954-34499973 Msa1286550:CDS 50.0%
AGCTAAGCTCCCTTTCTTGG+AGG - chr8_3:34499957-34499976 Msa1286550:CDS 50.0%
ACAGGTTCATGTTCTCAGGG+AGG - chr8_3:34500074-34500093 Msa1286550:CDS 50.0%
GCTCAAGTTCCACATCGAGA+TGG + chr8_3:34500222-34500241 None:intergenic 50.0%
GGAAGAAAGGAGGGGAAACA+TGG - chr8_3:34500335-34500354 Msa1286550:CDS 50.0%
AGCATTTCAGCATTGCGGCA+TGG - chr8_3:34501480-34501499 Msa1286550:intron 50.0%
GGCATGGAGAACCACAAATG+TGG - chr8_3:34501496-34501515 Msa1286550:intron 50.0%
GACGTAAGGACCCACATTTG+TGG + chr8_3:34501510-34501529 None:intergenic 50.0%
! GCGCCAGAATAAGTTTGCTC+AGG + chr8_3:34501559-34501578 None:intergenic 50.0%
AGCTCAAGGAGGATCCTTTC+TGG - chr8_3:34502884-34502903 Msa1286550:intron 50.0%
TTCAGCCCGAGTTCATGAAC+AGG + chr8_3:34503014-34503033 None:intergenic 50.0%
ATGAACTCGGGCTGAATCTG+TGG - chr8_3:34503018-34503037 Msa1286550:intron 50.0%
TCGGCTACTGAACACACTTC+TGG - chr8_3:34503076-34503095 Msa1286550:intron 50.0%
! GAGGCGTCTGAATGAGGAAA+TGG - chr8_3:34503304-34503323 Msa1286550:intron 50.0%
CAGTCTCGGGATCCATGTAA+TGG + chr8_3:34503340-34503359 None:intergenic 50.0%
TTGTTCCGTCGTGTAACCGA+CGG - chr8_3:34503494-34503513 Msa1286550:intron 50.0%
! AAAGACCGTCGGTTACACGA+CGG + chr8_3:34503502-34503521 None:intergenic 50.0%
AGCCTCTGCACAAACTCAAC+TGG + chr8_3:34503605-34503624 None:intergenic 50.0%
GGTCAACGAGGATGATGTAG+AGG - chr8_3:34503796-34503815 Msa1286550:intron 50.0%
! CTGGCAAAGAGGCTTTTGTC+TGG - chr8_3:34503896-34503915 Msa1286550:intron 50.0%
AACCTCTCAGGACACAATGC+AGG - chr8_3:34504024-34504043 Msa1286550:intron 50.0%
ACCTCTCAGGACACAATGCA+GGG - chr8_3:34504025-34504044 Msa1286550:intron 50.0%
GAGTATTACGTGCAACCTGC+CGG - chr8_3:34504132-34504151 Msa1286550:intron 50.0%
ATACTGGCAGGAGATTGTCG+TGG - chr8_3:34504206-34504225 Msa1286550:intron 50.0%
ATGCTTCTGACCCTTCCCAA+AGG + chr8_3:34504266-34504285 None:intergenic 50.0%
AGCAACTGAGATTCCTGCTC+CGG - chr8_3:34504369-34504388 Msa1286550:intron 50.0%
CATCTCTTAAGATCCGGAGC+AGG + chr8_3:34504385-34504404 None:intergenic 50.0%
GGAATCCGAACCTGAGAAAC+AGG - chr8_3:34504555-34504574 Msa1286550:intron 50.0%
! TGCCGAGTTTCCTGTTTCTC+AGG + chr8_3:34504568-34504587 None:intergenic 50.0%
GGTTCATGTTCTCAGGGAGG+AGG - chr8_3:34500077-34500096 Msa1286550:CDS 55.0%
TAGCCGAGTCCTGATCTGGT+TGG + chr8_3:34503063-34503082 None:intergenic 55.0%
TCAGTAGCCGAGTCCTGATC+TGG + chr8_3:34503067-34503086 None:intergenic 55.0%
!! AGCTGAGAGGCGTCTGAATG+AGG - chr8_3:34503298-34503317 Msa1286550:intron 55.0%
TATGCCAGCCACCCTGACTT+AGG - chr8_3:34504052-34504071 Msa1286550:intron 55.0%
TAGGACCGTCGCCTAAGTCA+GGG + chr8_3:34504066-34504085 None:intergenic 55.0%
CGGTCCTACACTTACTGTCC+AGG - chr8_3:34504078-34504097 Msa1286550:intron 55.0%
TATTACGTGCAACCTGCCGG+TGG - chr8_3:34504135-34504154 Msa1286550:intron 55.0%
GTGCAGATATTTCCACCGGC+AGG + chr8_3:34504150-34504169 None:intergenic 55.0%
ACCTTGGCACACATACTGGC+AGG - chr8_3:34504194-34504213 Msa1286550:intron 55.0%
TCCTGCCAGTATGTGTGCCA+AGG + chr8_3:34504198-34504217 None:intergenic 55.0%
GGACAGGAAGCCTCAGATTG+AGG - chr8_3:34504600-34504619 Msa1286550:CDS 55.0%
CAGGAAGCCTCAGATTGAGG+CGG - chr8_3:34504603-34504622 Msa1286550:CDS 55.0%
ACTATCGCCGCCTCAATCTG+AGG + chr8_3:34504613-34504632 None:intergenic 55.0%
AGATTGAGGCGGCGATAGTG+AGG - chr8_3:34504614-34504633 Msa1286550:CDS 55.0%
TCAGTAAGGGAGCAGCCTCC+TGG + chr8_3:34501432-34501451 None:intergenic 60.0%
GGGTCTGAAAGGGGTCAACG+AGG - chr8_3:34503784-34503803 Msa1286550:intron 60.0%
GCCCTGCATTGTGTCCTGAG+AGG + chr8_3:34504029-34504048 None:intergenic 60.0%
AGCCACCCTGACTTAGGCGA+CGG - chr8_3:34504058-34504077 Msa1286550:intron 60.0%
GTAGGACCGTCGCCTAAGTC+AGG + chr8_3:34504067-34504086 None:intergenic 60.0%
ACAGGAAACTCGGCAGCGAG+TGG - chr8_3:34504573-34504592 Msa1286550:intron 60.0%
GTCGCCTAAGTCAGGGTGGC+TGG + chr8_3:34504059-34504078 None:intergenic 65.0%
GACCGTCGCCTAAGTCAGGG+TGG + chr8_3:34504063-34504082 None:intergenic 65.0%
GGAAACTCGGCAGCGAGTGG+AGG - chr8_3:34504576-34504595 Msa1286550:CDS 65.0%
AACTCGGCAGCGAGTGGAGG+AGG - chr8_3:34504579-34504598 Msa1286550:CDS 65.0%
GGCAGCGAGTGGAGGAGGAC+AGG - chr8_3:34504584-34504603 Msa1286550:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 34498286 34505028 34498286 ID=Msa1286550;Name=Msa1286550
chr8_3 mRNA 34498286 34505028 34498286 ID=Msa1286550-mRNA-1;Parent=Msa1286550;Name=Msa1286550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=293|1|1|1|1|1|2|212|732
chr8_3 exon 34498286 34500535 34498286 ID=Msa1286550-mRNA-1:exon:10326;Parent=Msa1286550-mRNA-1
chr8_3 exon 34504575 34505028 34504575 ID=Msa1286550-mRNA-1:exon:10325;Parent=Msa1286550-mRNA-1
chr8_3 five_prime_UTR 34504736 34505028 34504736 ID=Msa1286550-mRNA-1:five_prime_utr;Parent=Msa1286550-mRNA-1
chr8_3 CDS 34504575 34504735 34504575 ID=Msa1286550-mRNA-1:cds;Parent=Msa1286550-mRNA-1
chr8_3 CDS 34498498 34500535 34498498 ID=Msa1286550-mRNA-1:cds;Parent=Msa1286550-mRNA-1
chr8_3 three_prime_UTR 34498286 34498497 34498286 ID=Msa1286550-mRNA-1:three_prime_utr;Parent=Msa1286550-mRNA-1
Gene Sequence

>Msa1286550

ATGAGTAACCAGAAGAAGAAGAATTTTCAGATTGAAGCGTTTAAGCATAGGGTTGTTATGGATCCGAAATATGCAGATAAGACATGGAAGATTCTTGAAGATGCTATTCATGAGATTTATAATCATAACGCTAGTGGTCTTAGCTTTGAAGAACTTTACAGAAATGCATACAATATGGTGCTTCACAAATTTGGTGATAGGTTGTACTCAGGATTGGTTGCGACTATGACTGCGCATCTCAAAGAAATAGCTAAATCTATTGAAGCAGCTCAAGGAGGATCCTTTCTGGAAGAACTGAACAGGAAATGGAATGATCATAACAAAGCATTGCAAATGATTAGAGATATACTGATGTACATGGACAGAACTTTCATTCCAAGTGCCAAAAAGACTCCTGTTCATGAACTCGGGCTGAATCTGTGGAAAGAAAATGTCATTTATTCCAACCAGATCAGGACTCGGCTACTGAACACACTTCTGGAATTAGTACATAGTGAACGCACTGGTGAAGTTATTGATAGAGGGATAATGAGAAATATAACAAAAATGCTAATGGATTTAGGTCCATCTGTTTATGCTCAAGAATTTGAGACTCATTTTCTTCAAGTTTCAGCTGAGTTTTATCAGGTAGAGTCCCAAAGATTCATTGAGTGTTGTGATTGTGGTGATTATCTTAAGAAAGCTGAGAGGCGTCTGAATGAGGAAATGGATAGAGTTAGCCATTACATGGATCCCGAGACTGAAAAGAAGATTAATAAAGTGGTGGAGACGCAGATGATTGAAAATCACATGCTCAGATTAATCCATATGGAGAATTCTGGTTTAGTCAACATGCTTTGTGATGATAAATATGAAGATTTGGGTAGGATGTATAACTTGTTCCGTCGTGTAACCGACGGTCTTTTGAAAATACGAGAGGTGATGACTTCACACATAAGGGAATCTGGTAAACAGCTTGTTACTGATCCTGAAAGATTGAAGGATCCAGTTGAGTTTGTGCAGAGGCTCTTAGATGAGAAAGACAAATACGACAAGATTATAAACCTGGCATTCAATAATGACAAGTCTTTCCAGAATGCTTTGAATTCCTCGTTTGAATATTTCATTAACTTGAACCCCCGTTCTCCAGAGTTCATTTCACTATTTGTAGATGATAAACTTCGTAAGGGTCTGAAAGGGGTCAACGAGGATGATGTAGAGGTTACTCTGGACAAGGTGATGATGCTGTTCCGATACTTGCAAGAAAAAGATGTTTTTGAGAAGTATTATAAACAGCATCTGGCAAAGAGGCTTTTGTCTGGAAAAACGGTTTCTGATGATGCCGAGAGAAGTCTCATTGTTAAGCTCAAGACCGAATGTGGCTATCAGTTTACATCAAAATTAGAGGGAATGTTTACAGACATGAAAACCTCTCAGGACACAATGCAGGGCTTTTATGCCAGCCACCCTGACTTAGGCGACGGTCCTACACTTACTGTCCAGGTTCTTACAACAGGGTCTTGGCCAACTCAGTCGAGTATTACGTGCAACCTGCCGGTGGAAATATCTGCACTTTGCGAGAAGTTTCGGTCTTATTACCTTGGCACACATACTGGCAGGAGATTGTCGTGGCAAACTAACATGGGCTTTGCAGACTTAAAAGCAACCTTTGGGAAGGGTCAGAAGCATGAGTTAAACGTCTCTACCTACCAAATGTGTGTCCTTATGCTTTTCAATAATGCTGATAAACTTAGCTACAAGGAGATTGAGCAAGCAACTGAGATTCCTGCTCCGGATCTTAAGAGATGTCTACAATCATTGGCTTTAGTTAAGGGAAGAAATGTCCTTAGAAAGGAGCCGATGAGTAAAGATGTTGGTGAGGATGACGCTTTCTCTGTTAATGACAAGTTCAGTAGTAAACTATACAAGGTTAAAATAGGAACTGTAGTTGCACAAAAGGAATCCGAACCTGAGAAACAGGAAACTCGGCAGCGAGTGGAGGAGGACAGGAAGCCTCAGATTGAGGCGGCGATAGTGAGGATCATGAAATCTAGGAAGCAACTTGATCATAACAATCTTATAGCTGAAGTCACAAAGCAGTTGCAGTCACGTTTCCTTGCAAATCCAACAGAGGTCAAGAAACGCATTGAGTCTCTCATTGAGCGAGACTTTTTGGAGAGGGATGATAACGACAGAAAAATGTATCGGTATCTTGCATAG

Protein sequence

>Msa1286550

MSNQKKKNFQIEAFKHRVVMDPKYADKTWKILEDAIHEIYNHNASGLSFEELYRNAYNMVLHKFGDRLYSGLVATMTAHLKEIAKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTFIPSAKKTPVHELGLNLWKENVIYSNQIRTRLLNTLLELVHSERTGEVIDRGIMRNITKMLMDLGPSVYAQEFETHFLQVSAEFYQVESQRFIECCDCGDYLKKAERRLNEEMDRVSHYMDPETEKKINKVVETQMIENHMLRLIHMENSGLVNMLCDDKYEDLGRMYNLFRRVTDGLLKIREVMTSHIRESGKQLVTDPERLKDPVEFVQRLLDEKDKYDKIINLAFNNDKSFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVNEDDVEVTLDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASHPDLGDGPTLTVQVLTTGSWPTQSSITCNLPVEISALCEKFRSYYLGTHTGRRLSWQTNMGFADLKATFGKGQKHELNVSTYQMCVLMLFNNADKLSYKEIEQATEIPAPDLKRCLQSLALVKGRNVLRKEPMSKDVGEDDAFSVNDKFSSKLYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRKQLDHNNLIAEVTKQLQSRFLANPTEVKKRIESLIERDFLERDDNDRKMYRYLA*