AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1364430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1364430 MtrunA17_Chr7g0249641 96.290 593 19 2 1 591 1 592 0.0 1151
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1364430 AT1G65470.2 46.853 572 270 9 28 591 21 566 6.09e-139 424
Msa1364430 AT1G65470.1 47.569 576 268 11 28 591 21 574 4.96e-138 421

Find 134 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGCTGATGCTGATATTT+TGG 0.163103 tig0018135:+13657 Msa1364430:CDS
CGCTTTCGAGGGTTGGATTT+GGG 0.181625 tig0018135:-13301 None:intergenic
GCAGGTCACACTTTCATTTA+TGG 0.201384 tig0018135:+16661 Msa1364430:intron
ACGCTTGGATCCTTCCTTAA+TGG 0.205884 tig0018135:-17282 None:intergenic
TGCTTATTACAGAGGGGTTT+TGG 0.220658 tig0018135:+13405 Msa1364430:CDS
GAAGTTGAACATTTGGAATT+TGG 0.231141 tig0018135:+13039 None:intergenic
TGGAATAAGGGAAATGAAAA+TGG 0.239034 tig0018135:-13150 None:intergenic
CCCTAATCGGAGGTGGAATA+AGG 0.239437 tig0018135:-13163 None:intergenic
ACAAAAGCAAGTCTCAATTA+TGG 0.251427 tig0018135:+15926 Msa1364430:CDS
ATCATTCTGATTCATGTCTT+TGG 0.254230 tig0018135:+13683 Msa1364430:CDS
CCTTATTCCACCTCCGATTA+GGG 0.264057 tig0018135:+13163 Msa1364430:five_prime_UTR
TAAAGTGAACTGAAAATATT+TGG 0.266077 tig0018135:-13097 None:intergenic
CCTTCCTCGATAGTACTTCT+TGG 0.289125 tig0018135:-16901 None:intergenic
CCCTTATTCCACCTCCGATT+AGG 0.294428 tig0018135:+13162 Msa1364430:five_prime_UTR
TCGCTTTCGAGGGTTGGATT+TGG 0.308475 tig0018135:-13302 None:intergenic
TTGTTTGCAGTTCACATTGT+AGG 0.313048 tig0018135:-15116 None:intergenic
TTGGAGGACGTCATCCATTA+AGG 0.314346 tig0018135:+17268 Msa1364430:CDS
AGCTCTCCTCGAACAGATTT+CGG 0.317637 tig0018135:-13956 None:intergenic
TTTCATTTATGGCGCTCTTT+AGG 0.324079 tig0018135:+16672 Msa1364430:CDS
AAGAGTAGTGTGTTGTTTGC+TGG 0.327622 tig0018135:+13610 Msa1364430:CDS
CGTGGTGGTTGCGGCGTTGA+TGG 0.333252 tig0018135:+13474 Msa1364430:CDS
AATGTAAGAAGTTGAACATT+TGG 0.342203 tig0018135:+13032 None:intergenic
TTGTTATTCGACGCACTTGT+CGG 0.356057 tig0018135:+13978 Msa1364430:CDS
GGGGATTGTGTTGGCGGAAG+GGG 0.357109 tig0018135:+13570 Msa1364430:CDS
CTGATTCATGTCTTTGGTGT+TGG 0.362682 tig0018135:+13689 Msa1364430:CDS
TCGCTCTGAACAGAGGGATT+AGG 0.366654 tig0018135:-15972 None:intergenic
TCGAACCTCCGCATTGCTTA+AGG 0.367255 tig0018135:-13447 None:intergenic
GGTGGCGGTGGTTGTGGTGG+AGG 0.370622 tig0018135:-13253 None:intergenic
ATTTGCGCTTGTTTCTCTTC+GGG 0.373163 tig0018135:-13349 None:intergenic
TGAGGTGGTGGCGGTGGTTG+TGG 0.381810 tig0018135:-13259 None:intergenic
TGATTCATGTCTTTGGTGTT+GGG 0.389779 tig0018135:+13690 Msa1364430:CDS
TTGTTAAAAGCTTCAGTCTT+GGG 0.390193 tig0018135:-16744 None:intergenic
GTTGTGGTGGAGGAGTGGTT+TGG 0.391596 tig0018135:-13243 None:intergenic
GACAGGATCATGGCTGTATC+TGG 0.395958 tig0018135:+14013 Msa1364430:CDS
GATTTGCGCTTGTTTCTCTT+CGG 0.401076 tig0018135:-13350 None:intergenic
AACTGAAAATATTTGGTGTT+TGG 0.401856 tig0018135:-13090 None:intergenic
GGGTTGGATTTGGGACGATT+TGG 0.425622 tig0018135:-13292 None:intergenic
GGAATAAGGGAAATGAAAAT+GGG 0.428488 tig0018135:-13149 None:intergenic
TGTATTTATAGTCATGTTGT+TGG 0.432134 tig0018135:+17249 Msa1364430:intron
CGATTTGGTGTTGGATCTTG+AGG 0.433773 tig0018135:-13277 None:intergenic
GAAAAGGATGCAGACCGATT+AGG 0.439137 tig0018135:+16819 Msa1364430:CDS
GGAAGGGGTTAATTCAGCTT+TGG 0.440309 tig0018135:+13585 Msa1364430:CDS
CCTAATCGGAGGTGGAATAA+GGG 0.443618 tig0018135:-13162 None:intergenic
TTCGAGAAACGTGGTGGTTG+CGG 0.445489 tig0018135:+13465 Msa1364430:CDS
CTGGACTACTTTCTCCTAAT+CGG 0.457878 tig0018135:-16833 None:intergenic
AAAATTGCTAATTAAACAGT+TGG 0.458316 tig0018135:+15038 Msa1364430:CDS
GACATTCGCATGATAGTTGA+AGG 0.459315 tig0018135:+14870 Msa1364430:CDS
AAACCATAAAAGGCTGGTCT+AGG 0.464102 tig0018135:-16948 None:intergenic
TATGTCAGCTACTCTTTCAA+TGG 0.465368 tig0018135:+16055 Msa1364430:CDS
GGTGGTGGCGGTGGTTGTGG+TGG 0.466786 tig0018135:-13256 None:intergenic
GCAATTCATGAGGATGAGTT+AGG 0.467673 tig0018135:+16792 Msa1364430:CDS
TTTGTTAAAAGCTTCAGTCT+TGG 0.468049 tig0018135:-16745 None:intergenic
ACTTACTTGCGAAGATCCTC+AGG 0.468632 tig0018135:-16110 None:intergenic
CAAAATATCAGCATCAGCAT+TGG 0.468700 tig0018135:-13656 None:intergenic
TGGTGGAGGAGTGGTTTGGA+CGG 0.475446 tig0018135:-13239 None:intergenic
CGGTGGTTGTGGTGGAGGAG+TGG 0.476087 tig0018135:-13248 None:intergenic
AGAGTAGTGTGTTGTTTGCT+GGG 0.478774 tig0018135:+13611 Msa1364430:CDS
GATGGATTCTTTGTACCAGA+TGG 0.480905 tig0018135:+17526 Msa1364430:CDS
AAAATATCAGCATCAGCATT+GGG 0.483686 tig0018135:-13655 None:intergenic
GAACATTTGGAATTTGGAAG+TGG 0.485632 tig0018135:+13045 Msa1364430:five_prime_UTR
TGAATTGTGAAGTGGCGAAT+GGG 0.486970 tig0018135:+13548 Msa1364430:CDS
TCTGATGGAGAAAGTGAAGA+TGG 0.487964 tig0018135:+17508 Msa1364430:CDS
GGATCTTGAGGTGGTGGCGG+TGG 0.490632 tig0018135:-13265 None:intergenic
CTCAAACAGAAAACAGAGAT+GGG 0.493093 tig0018135:+16707 Msa1364430:CDS
ATTGAGCATGAATTACCATC+TGG 0.498051 tig0018135:-16852 None:intergenic
GGTGTTGGATCTTGAGGTGG+TGG 0.500595 tig0018135:-13271 None:intergenic
TGTCAGCAGCGATGAGGAAT+GGG 0.505324 tig0018135:+17314 Msa1364430:CDS
CATTTGGAATTTGGAAGTGG+AGG 0.505539 tig0018135:+13048 Msa1364430:five_prime_UTR
GTTGGATCTTGAGGTGGTGG+CGG 0.506170 tig0018135:-13268 None:intergenic
GTGTGTTGTTTGCTGGGCAG+AGG 0.507517 tig0018135:+13617 Msa1364430:CDS
TTGTCAGCAGCGATGAGGAA+TGG 0.512945 tig0018135:+17313 Msa1364430:CDS
AGATTGTGAGAAAGATGAAG+AGG 0.516959 tig0018135:+17462 Msa1364430:CDS
TGGAGGAGTGGTTTGGACGG+TGG 0.517012 tig0018135:-13236 None:intergenic
ATTTATAGTCATGTTGTTGG+AGG 0.522578 tig0018135:+17252 Msa1364430:intron
TTATAGTCAAAACTTAATCA+AGG 0.530499 tig0018135:+14812 Msa1364430:CDS
GACGGTGGTGTCAATTTGCA+TGG 0.534096 tig0018135:-13221 None:intergenic
AGTACTTCTTGGCATCAAGA+TGG 0.534096 tig0018135:-16890 None:intergenic
GATTTGGGACGATTTGGTGT+TGG 0.536331 tig0018135:-13286 None:intergenic
CAGCGATGAGGAATGGGAAG+AGG 0.546041 tig0018135:+17320 Msa1364430:CDS
TCTCTCAGATGATGAGGTAG+AGG 0.550593 tig0018135:+17552 Msa1364430:CDS
GGTGTCAATTTGCATGGTGG+TGG 0.553543 tig0018135:-13215 None:intergenic
GTACTTCTTGGCATCAAGAT+GGG 0.553860 tig0018135:-16889 None:intergenic
AAAGATCCACGACAGGATCA+TGG 0.554368 tig0018135:+14003 Msa1364430:CDS
CTGACAACATAATCAACGCT+TGG 0.554493 tig0018135:-17297 None:intergenic
GGTTGTTTGCTTATTACAGA+GGG 0.555082 tig0018135:+13398 Msa1364430:CDS
TCATCTGAGAGATACCCATC+TGG 0.559172 tig0018135:-17541 None:intergenic
GTGGAGGCAACAAAAGCACT+TGG 0.561782 tig0018135:+13064 Msa1364430:five_prime_UTR
ATGGATTCTTTGTACCAGAT+GGG 0.562593 tig0018135:+17527 Msa1364430:CDS
ACTTTGTCGCTCTGAACAGA+GGG 0.566161 tig0018135:-15978 None:intergenic
GAGGAAGGTTCAAAATCTGA+TGG 0.568843 tig0018135:+17493 Msa1364430:CDS
TTGTTGCCGAAATCTGTTCG+AGG 0.572625 tig0018135:+13950 Msa1364430:CDS
GAAGAGGAATGTCAAGAGGA+AGG 0.573812 tig0018135:+17478 Msa1364430:CDS
CTGAATTGTGAAGTGGCGAA+TGG 0.576328 tig0018135:+13547 Msa1364430:CDS
AGATGAAGAGGAATGTCAAG+AGG 0.577660 tig0018135:+17474 Msa1364430:CDS
GGATGAGTTAGGCACCGAAA+AGG 0.579468 tig0018135:+16803 Msa1364430:CDS
GCTCAAACAGAAAACAGAGA+TGG 0.580529 tig0018135:+16706 Msa1364430:CDS
GAATTGTGAAGTGGCGAATG+GGG 0.580861 tig0018135:+13549 Msa1364430:CDS
TTCAAAGTTGTCCCAAGGTG+AGG 0.585887 tig0018135:+15782 Msa1364430:CDS
TTCATGTCTTTGGTGTTGGG+AGG 0.591006 tig0018135:+13693 Msa1364430:CDS
CTTAACAAATCATCTGCAGT+GGG 0.591857 tig0018135:-16011 None:intergenic
GTTGTTATTGTAGACTAGGG+AGG 0.592831 tig0018135:+13922 Msa1364430:intron
CCAAGAAGTACTATCGAGGA+AGG 0.593952 tig0018135:+16901 Msa1364430:CDS
GCTGAGTAAAACTTCTACTG+AGG 0.600514 tig0018135:+14845 Msa1364430:CDS
ATGAGAAATGTTGCGAACAG+AGG 0.602168 tig0018135:+15814 Msa1364430:CDS
AACTTTGTCGCTCTGAACAG+AGG 0.606807 tig0018135:-15979 None:intergenic
CAATCTGAAAGACTTTCACC+AGG 0.607556 tig0018135:-17433 None:intergenic
GCTTAACAAATCATCTGCAG+TGG 0.609619 tig0018135:-16012 None:intergenic
TGGGTATCTCTCAGATGATG+AGG 0.610119 tig0018135:+17546 Msa1364430:CDS
GGTGGTTGCGGCGTTGATGG+AGG 0.612733 tig0018135:+13477 Msa1364430:CDS
TCATCAACAAGCTTCGACAA+CGG 0.616224 tig0018135:-13511 None:intergenic
AATTGTGAAGTGGCGAATGG+GGG 0.623209 tig0018135:+13550 Msa1364430:CDS
GGGTTGTTTGCTTATTACAG+AGG 0.629300 tig0018135:+13397 Msa1364430:CDS
TTTGGTGTTGGATCTTGAGG+TGG 0.629389 tig0018135:-13274 None:intergenic
TACTAAATCTGCAATTCATG+AGG 0.629885 tig0018135:+16782 Msa1364430:CDS
TGAGAAGCTGAATTGTGAAG+TGG 0.631929 tig0018135:+13540 Msa1364430:CDS
TTAGGAGAAAGTAGTCCAGA+TGG 0.632131 tig0018135:+16837 Msa1364430:CDS
GAATAAGGGAAATGAAAATG+GGG 0.636896 tig0018135:-13148 None:intergenic
ACAAGTTCAAAGTTGTCCCA+AGG 0.638713 tig0018135:+15777 Msa1364430:CDS
AGGACGTCATCCATTAAGGA+AGG 0.639077 tig0018135:+17272 Msa1364430:CDS
ACAACAAAAGAAGCAAGCAG+AGG 0.639627 tig0018135:+15839 Msa1364430:CDS
GCTGGGCAGAGGATGATGTA+CGG 0.640684 tig0018135:+13628 Msa1364430:CDS
ATTGACCTTAAGCAATGCGG+AGG 0.643580 tig0018135:+13442 Msa1364430:CDS
AAGTAGTGATATTAAGCCTG+AGG 0.651722 tig0018135:+16094 Msa1364430:CDS
ATTGTGAAGTGGCGAATGGG+GGG 0.662126 tig0018135:+13551 Msa1364430:CDS
TTATGTTGTCAGCAGCGATG+AGG 0.668119 tig0018135:+17308 Msa1364430:CDS
ATGCGGAGGTTCGAGAAACG+TGG 0.674122 tig0018135:+13456 Msa1364430:CDS
TGGAGGCAACAAAAGCACTT+GGG 0.674285 tig0018135:+13065 Msa1364430:five_prime_UTR
GGTGGTGTCAATTTGCATGG+TGG 0.675819 tig0018135:-13218 None:intergenic
ATACAGCCATGATCCTGTCG+TGG 0.676276 tig0018135:-14009 None:intergenic
CGGAGGTTCGAGAAACGTGG+TGG 0.685380 tig0018135:+13459 Msa1364430:CDS
TCAAACAGAAAACAGAGATG+GGG 0.687278 tig0018135:+16708 Msa1364430:CDS
GATGCCAAGAAGTACTATCG+AGG 0.690027 tig0018135:+16897 Msa1364430:CDS
GTTGTTTGCTTATTACAGAG+GGG 0.700903 tig0018135:+13399 Msa1364430:CDS
GTGATTGACCTTAAGCAATG+CGG 0.712346 tig0018135:+13439 Msa1364430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTAAAAATTATTTT+TGG - tig0018135:16200-16219 None:intergenic 0.0%
!!! ATAATTTTTAAAATAAAAAT+TGG + tig0018135:16203-16222 Msa1364430:intron 0.0%
!! ATAAAAATTGTAAAATAACA+GGG - tig0018135:15414-15433 None:intergenic 10.0%
!! AATAAAAATTGTAAAATAAC+AGG - tig0018135:15415-15434 None:intergenic 10.0%
!!! TTTAAAATAAAAATTGGATA+TGG + tig0018135:16209-16228 Msa1364430:intron 10.0%
!! TTAAAATAAAAATTGGATAT+GGG + tig0018135:16210-16229 Msa1364430:intron 10.0%
!!! AATTTTTTTTTTTTTTTGTG+AGG + tig0018135:16295-16314 Msa1364430:intron 10.0%
!!! TGATTTTTTTTCTTGATTTT+TGG + tig0018135:13716-13735 Msa1364430:intron 15.0%
!!! ATTAAGTTTTGACTATAATT+AGG - tig0018135:14810-14829 None:intergenic 15.0%
!!! TTTTTCTAAATTATAATTGC+AGG + tig0018135:14989-15008 Msa1364430:intron 15.0%
!!! TTTTCTAAATTATAATTGCA+GGG + tig0018135:14990-15009 Msa1364430:intron 15.0%
!! TTGTAAAATGACTTAAATTT+GGG - tig0018135:15336-15355 None:intergenic 15.0%
!! ATTGTAAAATGACTTAAATT+TGG - tig0018135:15337-15356 None:intergenic 15.0%
!! AGAATCAAGAAAATTATAAT+AGG - tig0018135:16429-16448 None:intergenic 15.0%
!! CTATGTCTATATTTAAAAAA+TGG + tig0018135:17032-17051 Msa1364430:intron 15.0%
!! ATCATCATTAATTTATTGTA+TGG + tig0018135:17173-17192 Msa1364430:intron 15.0%
!!! AATGATGTTCTTTATTTTTA+AGG + tig0018135:17405-17424 Msa1364430:intron 15.0%
!! TAAAGTGAACTGAAAATATT+TGG - tig0018135:13100-13119 None:intergenic 20.0%
!!! ATGAATGTTTTTTAAGATGT+TGG + tig0018135:13817-13836 Msa1364430:intron 20.0%
!!! CAATTACATGCTTTAAAAAA+GGG - tig0018135:14679-14698 None:intergenic 20.0%
!!! ACAATTACATGCTTTAAAAA+AGG - tig0018135:14680-14699 None:intergenic 20.0%
!!! TGTAATTGTTGTGAAAATTT+TGG + tig0018135:14691-14710 Msa1364430:intron 20.0%
!! TTATAGTCAAAACTTAATCA+AGG + tig0018135:14812-14831 Msa1364430:CDS 20.0%
!!! TAATTAGCAATTTTTCTTCT+TGG - tig0018135:15032-15051 None:intergenic 20.0%
!! AAAATTGCTAATTAAACAGT+TGG + tig0018135:15038-15057 Msa1364430:CDS 20.0%
!!! TAACAAATGTAATGGAAATT+TGG - tig0018135:15262-15281 None:intergenic 20.0%
!! ACAGGGTAATAAATATTAAA+GGG - tig0018135:15397-15416 None:intergenic 20.0%
!! AACAGGGTAATAAATATTAA+AGG - tig0018135:15398-15417 None:intergenic 20.0%
!! TTATTTATGTAGTACAAAAG+GGG - tig0018135:16378-16397 None:intergenic 20.0%
!! GTTATTTATGTAGTACAAAA+GGG - tig0018135:16379-16398 None:intergenic 20.0%
!!! TGTTATTTATGTAGTACAAA+AGG - tig0018135:16380-16399 None:intergenic 20.0%
!! ATAGGAAGATAATATTTACA+AGG - tig0018135:16411-16430 None:intergenic 20.0%
!! GAATGTTATACTTGTAAAAA+AGG + tig0018135:16512-16531 Msa1364430:intron 20.0%
!!! ATTTCATATTGACTTATACT+AGG + tig0018135:17009-17028 Msa1364430:intron 20.0%
!! TAAATGCATATAATTGTTTC+AGG + tig0018135:17143-17162 Msa1364430:intron 20.0%
!!! AACTGAAAATATTTGGTGTT+TGG - tig0018135:13093-13112 None:intergenic 25.0%
! TGAAAAAGAAAAACCCTAAT+CGG - tig0018135:13179-13198 None:intergenic 25.0%
! GAAAAAAAGATGTTAATTCG+CGG + tig0018135:13323-13342 Msa1364430:CDS 25.0%
!!! TATTTGTTGTGTGATTTAAC+TGG + tig0018135:13774-13793 Msa1364430:intron 25.0%
!!! ATTTGTTGTGTGATTTAACT+GGG + tig0018135:13775-13794 Msa1364430:intron 25.0%
!!! TTGGTTATGTTGATAGTAAT+TGG + tig0018135:13836-13855 Msa1364430:intron 25.0%
!!! TGGTTATGTTGATAGTAATT+GGG + tig0018135:13837-13856 Msa1364430:intron 25.0%
!! TATGTTGTTATTGTAGACTA+GGG + tig0018135:13919-13938 Msa1364430:intron 25.0%
! TTGTCAAATACAAACTCAAA+CGG + tig0018135:14111-14130 Msa1364430:intron 25.0%
! AACTTGGAATTCTAAACAAA+CGG - tig0018135:14199-14218 None:intergenic 25.0%
!!! AACAAAGTTTTGTCAAATAG+TGG + tig0018135:14495-14514 Msa1364430:intron 25.0%
! TAGTGGAATATGCAAATAAT+TGG + tig0018135:14616-14635 Msa1364430:intron 25.0%
! GAACAATTCATATATTTGCA+AGG - tig0018135:14962-14981 None:intergenic 25.0%
! AATCAAAACAACACTTACAA+TGG - tig0018135:15145-15164 None:intergenic 25.0%
! GTATCTTCTAACAAATGTAA+TGG - tig0018135:15270-15289 None:intergenic 25.0%
! TCCAAATTATTAGTCAGTTT+GGG + tig0018135:15298-15317 Msa1364430:intron 25.0%
! ACAAAATTACCCTTCATTTA+TGG - tig0018135:15451-15470 None:intergenic 25.0%
!!! ATTTCTTAATTTGTGCGAAA+TGG + tig0018135:15494-15513 Msa1364430:intron 25.0%
! TGGCAAAATGACTTATAATT+TGG + tig0018135:15514-15533 Msa1364430:intron 25.0%
! GGCAAAATGACTTATAATTT+GGG + tig0018135:15515-15534 Msa1364430:intron 25.0%
! AAATGACTTATAATTTGGGA+TGG + tig0018135:15519-15538 Msa1364430:intron 25.0%
! AACATACAGTATAAAAGGAA+AGG - tig0018135:16327-16346 None:intergenic 25.0%
! GGAAAAACATACAGTATAAA+AGG - tig0018135:16332-16351 None:intergenic 25.0%
! AAAGAATAATACCCGTAAAA+CGG - tig0018135:16355-16374 None:intergenic 25.0%
! AGATAATATTTACAAGGAGT+CGG - tig0018135:16405-16424 None:intergenic 25.0%
! TGTGGATATGATGAAAAATA+AGG - tig0018135:16541-16560 None:intergenic 25.0%
!! GCATTTAATTTAACTAACCA+GGG - tig0018135:17130-17149 None:intergenic 25.0%
!! TGCATTTAATTTAACTAACC+AGG - tig0018135:17131-17150 None:intergenic 25.0%
! TGTATTTATAGTCATGTTGT+TGG + tig0018135:17249-17268 Msa1364430:intron 25.0%
! ATGAATAAGATAAGATGCAA+AGG - tig0018135:17355-17374 None:intergenic 25.0%
!!! GATGTTCTTTATTTTTAAGG+AGG + tig0018135:17408-17427 Msa1364430:intron 25.0%
GAATAAGGGAAATGAAAATG+GGG - tig0018135:13151-13170 None:intergenic 30.0%
GGAATAAGGGAAATGAAAAT+GGG - tig0018135:13152-13171 None:intergenic 30.0%
TGGAATAAGGGAAATGAAAA+TGG - tig0018135:13153-13172 None:intergenic 30.0%
AAAATATCAGCATCAGCATT+GGG - tig0018135:13658-13677 None:intergenic 30.0%
ATCATTCTGATTCATGTCTT+TGG + tig0018135:13683-13702 Msa1364430:CDS 30.0%
TGTTGAAGCTGAATGTATAT+TGG + tig0018135:13864-13883 Msa1364430:intron 30.0%
! CTATGTTGTTATTGTAGACT+AGG + tig0018135:13918-13937 Msa1364430:intron 30.0%
TGACAACACAGATAAATCAA+AGG - tig0018135:14097-14116 None:intergenic 30.0%
!! TCGTTTGAGTTTGTTAAACT+TGG - tig0018135:14215-14234 None:intergenic 30.0%
CATAGTGAAATCTGAACAAA+TGG - tig0018135:14307-14326 None:intergenic 30.0%
AGTAAAAACAGTGTTGTCAA+GGG - tig0018135:14575-14594 None:intergenic 30.0%
!!! AACACTGTTTTTACTGGAAA+AGG + tig0018135:14580-14599 Msa1364430:intron 30.0%
! AGTTTTACTCAGCTTTTTAG+AGG - tig0018135:14838-14857 None:intergenic 30.0%
GTCCAAATTATTAGTCAGTT+TGG + tig0018135:15297-15316 Msa1364430:intron 30.0%
TCCCAAACTGACTAATAATT+TGG - tig0018135:15302-15321 None:intergenic 30.0%
TTTCCCATACCATAAATGAA+GGG + tig0018135:15439-15458 Msa1364430:intron 30.0%
TTACCCTTCATTTATGGTAT+GGG - tig0018135:15445-15464 None:intergenic 30.0%
ATTACCCTTCATTTATGGTA+TGG - tig0018135:15446-15465 None:intergenic 30.0%
!!! TGCAAATACTTTTGGCTTTT+TGG - tig0018135:15566-15585 None:intergenic 30.0%
! TTGGATTGGAAATTAACTTG+CGG + tig0018135:15597-15616 Msa1364430:intron 30.0%
TAAGAATGACTATCTCAACT+AGG - tig0018135:15667-15686 None:intergenic 30.0%
ACTTGTTTCCTAGAACAATT+AGG - tig0018135:15763-15782 None:intergenic 30.0%
ACAAAAGCAAGTCTCAATTA+TGG + tig0018135:15926-15945 Msa1364430:CDS 30.0%
AAGAATAATACCCGTAAAAC+GGG - tig0018135:16354-16373 None:intergenic 30.0%
!! TTTTTAGAAAACCTAAGGTG+TGG - tig0018135:16559-16578 None:intergenic 30.0%
!!! GTGGTTTTTTAGAAAACCTA+AGG - tig0018135:16564-16583 None:intergenic 30.0%
TTGTTAAAAGCTTCAGTCTT+GGG - tig0018135:16747-16766 None:intergenic 30.0%
TTTGTTAAAAGCTTCAGTCT+TGG - tig0018135:16748-16767 None:intergenic 30.0%
TACTAAATCTGCAATTCATG+AGG + tig0018135:16782-16801 Msa1364430:CDS 30.0%
! AGCATGATCTAACCTTTTAA+CGG - tig0018135:16979-16998 None:intergenic 30.0%
CTAAACATTTGCATAACTAG+AGG - tig0018135:17089-17108 None:intergenic 30.0%
TGTTTAGTCACTACTTCTAA+AGG + tig0018135:17102-17121 Msa1364430:intron 30.0%
TTATTGTATGGTGTGATATC+TGG + tig0018135:17185-17204 Msa1364430:intron 30.0%
CATCTCAACTAGATATATAC+TGG - tig0018135:17213-17232 None:intergenic 30.0%
ATTTATAGTCATGTTGTTGG+AGG + tig0018135:17252-17271 Msa1364430:intron 30.0%
! GAACATTTGGAATTTGGAAG+TGG + tig0018135:13045-13064 Msa1364430:five_prime_UTR 35.0%
AAAAGAAAAACCCTAATCGG+AGG - tig0018135:13176-13195 None:intergenic 35.0%
!!! CATCTTTTTTTCGCTTTCGA+GGG - tig0018135:13315-13334 None:intergenic 35.0%
!!! ACATCTTTTTTTCGCTTTCG+AGG - tig0018135:13316-13335 None:intergenic 35.0%
GGTTGTTTGCTTATTACAGA+GGG + tig0018135:13398-13417 Msa1364430:CDS 35.0%
GTTGTTTGCTTATTACAGAG+GGG + tig0018135:13399-13418 Msa1364430:CDS 35.0%
CAAAATATCAGCATCAGCAT+TGG - tig0018135:13659-13678 None:intergenic 35.0%
! CAATGCTGATGCTGATATTT+TGG + tig0018135:13657-13676 Msa1364430:CDS 35.0%
!! TGATTCATGTCTTTGGTGTT+GGG + tig0018135:13690-13709 Msa1364430:CDS 35.0%
! TGGTATGGATTACATTGCTT+TGG + tig0018135:14033-14052 Msa1364430:intron 35.0%
! TTTGAATGCTGTTAGTGGAT+TGG + tig0018135:14069-14088 Msa1364430:intron 35.0%
ATCACTATTCACTTGCATAG+TGG + tig0018135:14241-14260 Msa1364430:intron 35.0%
TCACTATTCACTTGCATAGT+GGG + tig0018135:14242-14261 Msa1364430:intron 35.0%
TAAACAAAACCGCTACTGTT+TGG - tig0018135:14393-14412 None:intergenic 35.0%
TAAATGCAGCTATAGAGCTA+TGG - tig0018135:14428-14447 None:intergenic 35.0%
AAAGCATAACGCAGAACAAT+GGG - tig0018135:14473-14492 None:intergenic 35.0%
! AAAAGCATAACGCAGAACAA+TGG - tig0018135:14474-14493 None:intergenic 35.0%
CAGTAAAAACAGTGTTGTCA+AGG - tig0018135:14576-14595 None:intergenic 35.0%
!!! CTTGACAACACTGTTTTTAC+TGG + tig0018135:14574-14593 Msa1364430:intron 35.0%
AAGGAATATGTTGTCGATAG+TGG + tig0018135:14599-14618 Msa1364430:intron 35.0%
GTAATTGAACATGTCAGGAT+AGG - tig0018135:14940-14959 None:intergenic 35.0%
TTGTTTGCAGTTCACATTGT+AGG - tig0018135:15119-15138 None:intergenic 35.0%
AGCTCCAATTACTTCTTACT+CGG + tig0018135:15182-15201 Msa1364430:intron 35.0%
AACACCGAGTAAGAAGTAAT+TGG - tig0018135:15189-15208 None:intergenic 35.0%
CTGACTAATAATTTGGACAG+AGG - tig0018135:15295-15314 None:intergenic 35.0%
CTTTCCCATACCATAAATGA+AGG + tig0018135:15438-15457 Msa1364430:intron 35.0%
! TGACTTATAATTTGGGATGG+TGG + tig0018135:15522-15541 Msa1364430:intron 35.0%
! GACTTATAATTTGGGATGGT+GGG + tig0018135:15523-15542 Msa1364430:intron 35.0%
! CAACATCGTGCAAATACTTT+TGG - tig0018135:15574-15593 None:intergenic 35.0%
CTTAACAAATCATCTGCAGT+GGG - tig0018135:16014-16033 None:intergenic 35.0%
TATGTCAGCTACTCTTTCAA+TGG + tig0018135:16055-16074 Msa1364430:CDS 35.0%
AAGTAGTGATATTAAGCCTG+AGG + tig0018135:16094-16113 Msa1364430:CDS 35.0%
ATATGTACAGTGCACAAGAT+TGG - tig0018135:16169-16188 None:intergenic 35.0%
TTGTGCACTGTACATATACA+TGG + tig0018135:16172-16191 Msa1364430:intron 35.0%
! GTATGTTTTTCCCCGTTTTA+CGG + tig0018135:16340-16359 Msa1364430:intron 35.0%
! TATGTTTTTCCCCGTTTTAC+GGG + tig0018135:16341-16360 Msa1364430:intron 35.0%
AGAATAATACCCGTAAAACG+GGG - tig0018135:16353-16372 None:intergenic 35.0%
TTTCATCATATCCACACCTT+AGG + tig0018135:16545-16564 Msa1364430:intron 35.0%
TGAAAAATGCTTGACTTTGC+AGG + tig0018135:16643-16662 Msa1364430:intron 35.0%
TTTCATTTATGGCGCTCTTT+AGG + tig0018135:16672-16691 Msa1364430:CDS 35.0%
CTCAAACAGAAAACAGAGAT+GGG + tig0018135:16707-16726 Msa1364430:CDS 35.0%
TCAAACAGAAAACAGAGATG+GGG + tig0018135:16708-16727 Msa1364430:CDS 35.0%
ATTGAGCATGAATTACCATC+TGG - tig0018135:16855-16874 None:intergenic 35.0%
! GCATGATCTAACCTTTTAAC+GGG - tig0018135:16978-16997 None:intergenic 35.0%
!!! TTTATTTTTAAGGAGGAGCC+TGG + tig0018135:17415-17434 Msa1364430:intron 35.0%
AGATTGTGAGAAAGATGAAG+AGG + tig0018135:17462-17481 Msa1364430:CDS 35.0%
ATGGATTCTTTGTACCAGAT+GGG + tig0018135:17527-17546 Msa1364430:CDS 35.0%
! CATTTGGAATTTGGAAGTGG+AGG + tig0018135:13048-13067 Msa1364430:five_prime_UTR 40.0%
!!! TTTTTTTCGCTTTCGAGGGT+TGG - tig0018135:13311-13330 None:intergenic 40.0%
! ATTTGCGCTTGTTTCTCTTC+GGG - tig0018135:13352-13371 None:intergenic 40.0%
! GATTTGCGCTTGTTTCTCTT+CGG - tig0018135:13353-13372 None:intergenic 40.0%
GGGTTGTTTGCTTATTACAG+AGG + tig0018135:13397-13416 Msa1364430:CDS 40.0%
! TGCTTATTACAGAGGGGTTT+TGG + tig0018135:13405-13424 Msa1364430:CDS 40.0%
GTGATTGACCTTAAGCAATG+CGG + tig0018135:13439-13458 Msa1364430:CDS 40.0%
TCATCAACAAGCTTCGACAA+CGG - tig0018135:13514-13533 None:intergenic 40.0%
TGAGAAGCTGAATTGTGAAG+TGG + tig0018135:13540-13559 Msa1364430:CDS 40.0%
TGAATTGTGAAGTGGCGAAT+GGG + tig0018135:13548-13567 Msa1364430:CDS 40.0%
!! AAGAGTAGTGTGTTGTTTGC+TGG + tig0018135:13610-13629 Msa1364430:CDS 40.0%
!! AGAGTAGTGTGTTGTTTGCT+GGG + tig0018135:13611-13630 Msa1364430:CDS 40.0%
! CTGATTCATGTCTTTGGTGT+TGG + tig0018135:13689-13708 Msa1364430:CDS 40.0%
! GTTGTTATTGTAGACTAGGG+AGG + tig0018135:13922-13941 Msa1364430:intron 40.0%
! TTGTTATTCGACGCACTTGT+CGG + tig0018135:13978-13997 Msa1364430:CDS 40.0%
TACATTGCTTTGGCTGACTA+TGG + tig0018135:14043-14062 Msa1364430:intron 40.0%
GTGCTATATCACTTGCATAG+CGG + tig0018135:14133-14152 Msa1364430:intron 40.0%
TGCTATATCACTTGCATAGC+GGG + tig0018135:14134-14153 Msa1364430:intron 40.0%
AAGCATAACGCAGAACAATG+GGG - tig0018135:14472-14491 None:intergenic 40.0%
GCTGAGTAAAACTTCTACTG+AGG + tig0018135:14845-14864 Msa1364430:CDS 40.0%
GACATTCGCATGATAGTTGA+AGG + tig0018135:14870-14889 Msa1364430:CDS 40.0%
GCAAGGTAATTGAACATGTC+AGG - tig0018135:14945-14964 None:intergenic 40.0%
!! TTACTCGGTGTTGCTATCAA+TGG + tig0018135:15197-15216 Msa1364430:intron 40.0%
TATTTGCACGATGTTGACGT+TGG + tig0018135:15578-15597 Msa1364430:intron 40.0%
TCCTAGAACAATTAGGCAGT+CGG - tig0018135:15756-15775 None:intergenic 40.0%
ACAAGTTCAAAGTTGTCCCA+AGG + tig0018135:15777-15796 Msa1364430:CDS 40.0%
! ATCAGTTTTTGCCTCACCTT+GGG - tig0018135:15796-15815 None:intergenic 40.0%
ATGAGAAATGTTGCGAACAG+AGG + tig0018135:15814-15833 Msa1364430:CDS 40.0%
ACAACAAAAGAAGCAAGCAG+AGG + tig0018135:15839-15858 Msa1364430:CDS 40.0%
AGGAAGCAGAAAAAGATCAG+CGG + tig0018135:15859-15878 Msa1364430:CDS 40.0%
GCTTAACAAATCATCTGCAG+TGG - tig0018135:16015-16034 None:intergenic 40.0%
!!! ACAGTGCACAAGATTGGTTT+TGG - tig0018135:16163-16182 None:intergenic 40.0%
! CCTACTCAGGAGTTTTTATG+TGG - tig0018135:16583-16602 None:intergenic 40.0%
CCACATAAAAACTCCTGAGT+AGG + tig0018135:16580-16599 Msa1364430:intron 40.0%
GAGAAAGGTAAAACCTACTC+AGG - tig0018135:16596-16615 None:intergenic 40.0%
CAACACGAGATGAAAGAGAA+AGG - tig0018135:16611-16630 None:intergenic 40.0%
GCAGGTCACACTTTCATTTA+TGG + tig0018135:16661-16680 Msa1364430:intron 40.0%
GCTCAAACAGAAAACAGAGA+TGG + tig0018135:16706-16725 Msa1364430:CDS 40.0%
GCAATTCATGAGGATGAGTT+AGG + tig0018135:16792-16811 Msa1364430:CDS 40.0%
! TAATCGGTCTGCATCCTTTT+CGG - tig0018135:16820-16839 None:intergenic 40.0%
CTGGACTACTTTCTCCTAAT+CGG - tig0018135:16836-16855 None:intergenic 40.0%
TTAGGAGAAAGTAGTCCAGA+TGG + tig0018135:16837-16856 Msa1364430:CDS 40.0%
GTACTTCTTGGCATCAAGAT+GGG - tig0018135:16892-16911 None:intergenic 40.0%
AGTACTTCTTGGCATCAAGA+TGG - tig0018135:16893-16912 None:intergenic 40.0%
!! AAACCATAAAAGGCTGGTCT+AGG - tig0018135:16951-16970 None:intergenic 40.0%
! GACCAGCCTTTTATGGTTTT+TGG + tig0018135:16952-16971 Msa1364430:CDS 40.0%
AACGGGCCAAAAACCATAAA+AGG - tig0018135:16961-16980 None:intergenic 40.0%
!!! ATGGTTTTTGGCCCGTTAAA+AGG + tig0018135:16964-16983 Msa1364430:CDS 40.0%
CTGACAACATAATCAACGCT+TGG - tig0018135:17300-17319 None:intergenic 40.0%
CAATCTGAAAGACTTTCACC+AGG - tig0018135:17436-17455 None:intergenic 40.0%
AGATGAAGAGGAATGTCAAG+AGG + tig0018135:17474-17493 Msa1364430:CDS 40.0%
GAGGAAGGTTCAAAATCTGA+TGG + tig0018135:17493-17512 Msa1364430:CDS 40.0%
TCTGATGGAGAAAGTGAAGA+TGG + tig0018135:17508-17527 Msa1364430:CDS 40.0%
! GATGGATTCTTTGTACCAGA+TGG + tig0018135:17526-17545 Msa1364430:CDS 40.0%
!! TGGAGGCAACAAAAGCACTT+GGG + tig0018135:13065-13084 Msa1364430:five_prime_UTR 45.0%
CCTAATCGGAGGTGGAATAA+GGG - tig0018135:13165-13184 None:intergenic 45.0%
CCTTATTCCACCTCCGATTA+GGG + tig0018135:13163-13182 Msa1364430:five_prime_UTR 45.0%
AGAAAAACCCTAATCGGAGG+TGG - tig0018135:13173-13192 None:intergenic 45.0%
!! TTTGGTGTTGGATCTTGAGG+TGG - tig0018135:13277-13296 None:intergenic 45.0%
!! CGATTTGGTGTTGGATCTTG+AGG - tig0018135:13280-13299 None:intergenic 45.0%
!! GATTTGGGACGATTTGGTGT+TGG - tig0018135:13289-13308 None:intergenic 45.0%
ACCCTAGAAAAAGAGCTCGA+AGG + tig0018135:13376-13395 Msa1364430:CDS 45.0%
! CCCTTCGAGCTCTTTTTCTA+GGG - tig0018135:13380-13399 None:intergenic 45.0%
CCCTAGAAAAAGAGCTCGAA+GGG + tig0018135:13377-13396 Msa1364430:CDS 45.0%
! ACCCTTCGAGCTCTTTTTCT+AGG - tig0018135:13381-13400 None:intergenic 45.0%
ATTGACCTTAAGCAATGCGG+AGG + tig0018135:13442-13461 Msa1364430:CDS 45.0%
CTGAATTGTGAAGTGGCGAA+TGG + tig0018135:13547-13566 Msa1364430:CDS 45.0%
GAATTGTGAAGTGGCGAATG+GGG + tig0018135:13549-13568 Msa1364430:CDS 45.0%
AATTGTGAAGTGGCGAATGG+GGG + tig0018135:13550-13569 Msa1364430:CDS 45.0%
GGAAGGGGTTAATTCAGCTT+TGG + tig0018135:13585-13604 Msa1364430:CDS 45.0%
!! TTCATGTCTTTGGTGTTGGG+AGG + tig0018135:13693-13712 Msa1364430:CDS 45.0%
TTGTTGCCGAAATCTGTTCG+AGG + tig0018135:13950-13969 Msa1364430:CDS 45.0%
AGCTCTCCTCGAACAGATTT+CGG - tig0018135:13959-13978 None:intergenic 45.0%
AAAGATCCACGACAGGATCA+TGG + tig0018135:14003-14022 Msa1364430:CDS 45.0%
GATCATGGCTGTATCTGGTA+TGG + tig0018135:14018-14037 Msa1364430:intron 45.0%
! GGTGCTTTGAATGCTGTTAG+TGG + tig0018135:14064-14083 Msa1364430:intron 45.0%
TTGCGACATTGCAACTCTGT+AGG + tig0018135:14521-14540 Msa1364430:intron 45.0%
GTGACGCAATCATTTCTGCA+AGG - tig0018135:14767-14786 None:intergenic 45.0%
CTAGAACAATTAGGCAGTCG+GGG - tig0018135:15754-15773 None:intergenic 45.0%
CCTAGAACAATTAGGCAGTC+GGG - tig0018135:15755-15774 None:intergenic 45.0%
TTCAAAGTTGTCCCAAGGTG+AGG + tig0018135:15782-15801 Msa1364430:CDS 45.0%
! CATCAGTTTTTGCCTCACCT+TGG - tig0018135:15797-15816 None:intergenic 45.0%
! ACTTTGTCGCTCTGAACAGA+GGG - tig0018135:15981-16000 None:intergenic 45.0%
! AACTTTGTCGCTCTGAACAG+AGG - tig0018135:15982-16001 None:intergenic 45.0%
ACTTACTTGCGAAGATCCTC+AGG - tig0018135:16113-16132 None:intergenic 45.0%
TGCCTTTACCCTCTTAAGCA+TGG + tig0018135:16132-16151 Msa1364430:intron 45.0%
GCCTTTACCCTCTTAAGCAT+GGG + tig0018135:16133-16152 Msa1364430:intron 45.0%
ACCCATGCTTAAGAGGGTAA+AGG - tig0018135:16137-16156 None:intergenic 45.0%
GAAAAGGATGCAGACCGATT+AGG + tig0018135:16819-16838 Msa1364430:CDS 45.0%
!! GATGCCAAGAAGTACTATCG+AGG + tig0018135:16897-16916 Msa1364430:CDS 45.0%
CCTTCCTCGATAGTACTTCT+TGG - tig0018135:16904-16923 None:intergenic 45.0%
!! CCAAGAAGTACTATCGAGGA+AGG + tig0018135:16901-16920 Msa1364430:CDS 45.0%
! ACTCCTAGACCAGCCTTTTA+TGG + tig0018135:16945-16964 Msa1364430:CDS 45.0%
GGCCAAAAACCATAAAAGGC+TGG - tig0018135:16957-16976 None:intergenic 45.0%
! CACTACTTCTAAAGGTTCCC+TGG + tig0018135:17110-17129 Msa1364430:intron 45.0%
TTGGAGGACGTCATCCATTA+AGG + tig0018135:17268-17287 Msa1364430:CDS 45.0%
AGGACGTCATCCATTAAGGA+AGG + tig0018135:17272-17291 Msa1364430:CDS 45.0%
ACGCTTGGATCCTTCCTTAA+TGG - tig0018135:17285-17304 None:intergenic 45.0%
TTATGTTGTCAGCAGCGATG+AGG + tig0018135:17308-17327 Msa1364430:CDS 45.0%
GAAGAGGAATGTCAAGAGGA+AGG + tig0018135:17478-17497 Msa1364430:CDS 45.0%
TCATCTGAGAGATACCCATC+TGG - tig0018135:17544-17563 None:intergenic 45.0%
TGGGTATCTCTCAGATGATG+AGG + tig0018135:17546-17565 Msa1364430:CDS 45.0%
TCTCTCAGATGATGAGGTAG+AGG + tig0018135:17552-17571 Msa1364430:CDS 45.0%
!! GTGGAGGCAACAAAAGCACT+TGG + tig0018135:13064-13083 Msa1364430:five_prime_UTR 50.0%
CCCTTATTCCACCTCCGATT+AGG + tig0018135:13162-13181 Msa1364430:five_prime_UTR 50.0%
CCCTAATCGGAGGTGGAATA+AGG - tig0018135:13166-13185 None:intergenic 50.0%
GGTGTCAATTTGCATGGTGG+TGG - tig0018135:13218-13237 None:intergenic 50.0%
! GGTGGTGTCAATTTGCATGG+TGG - tig0018135:13221-13240 None:intergenic 50.0%
! GACGGTGGTGTCAATTTGCA+TGG - tig0018135:13224-13243 None:intergenic 50.0%
! GGGTTGGATTTGGGACGATT+TGG - tig0018135:13295-13314 None:intergenic 50.0%
CGCTTTCGAGGGTTGGATTT+GGG - tig0018135:13304-13323 None:intergenic 50.0%
TCGCTTTCGAGGGTTGGATT+TGG - tig0018135:13305-13324 None:intergenic 50.0%
TCGAACCTCCGCATTGCTTA+AGG - tig0018135:13450-13469 None:intergenic 50.0%
TTCGAGAAACGTGGTGGTTG+CGG + tig0018135:13465-13484 Msa1364430:CDS 50.0%
ATTGTGAAGTGGCGAATGGG+GGG + tig0018135:13551-13570 Msa1364430:CDS 50.0%
GTCGGAAAAAGATCCACGAC+AGG + tig0018135:13996-14015 Msa1364430:CDS 50.0%
ATACAGCCATGATCCTGTCG+TGG - tig0018135:14012-14031 None:intergenic 50.0%
GACAGGATCATGGCTGTATC+TGG + tig0018135:14013-14032 Msa1364430:CDS 50.0%
AGCGTATCGCCAAACAGTAG+CGG + tig0018135:14381-14400 Msa1364430:intron 50.0%
GCACGATGTTGACGTTGGAT+TGG + tig0018135:15583-15602 Msa1364430:intron 50.0%
CAATTAGGCAGTCGGGGAAA+AGG - tig0018135:15748-15767 None:intergenic 50.0%
CCCGACTGCCTAATTGTTCT+AGG + tig0018135:15752-15771 Msa1364430:intron 50.0%
! TCGCTCTGAACAGAGGGATT+AGG - tig0018135:15975-15994 None:intergenic 50.0%
! TGGAGCACCCATGCTTAAGA+GGG - tig0018135:16143-16162 None:intergenic 50.0%
! TTGGAGCACCCATGCTTAAG+AGG - tig0018135:16144-16163 None:intergenic 50.0%
!! GGATGAGTTAGGCACCGAAA+AGG + tig0018135:16803-16822 Msa1364430:CDS 50.0%
TTGTCAGCAGCGATGAGGAA+TGG + tig0018135:17313-17332 Msa1364430:CDS 50.0%
TGTCAGCAGCGATGAGGAAT+GGG + tig0018135:17314-17333 Msa1364430:CDS 50.0%
! TGGTGGAGGAGTGGTTTGGA+CGG - tig0018135:13242-13261 None:intergenic 55.0%
! GTTGTGGTGGAGGAGTGGTT+TGG - tig0018135:13246-13265 None:intergenic 55.0%
! GTTGGATCTTGAGGTGGTGG+CGG - tig0018135:13271-13290 None:intergenic 55.0%
! GGTGTTGGATCTTGAGGTGG+TGG - tig0018135:13274-13293 None:intergenic 55.0%
ATGCGGAGGTTCGAGAAACG+TGG + tig0018135:13456-13475 Msa1364430:CDS 55.0%
GAATGGGGGGATTGTGTTGG+CGG + tig0018135:13564-13583 Msa1364430:CDS 55.0%
!! GTGTGTTGTTTGCTGGGCAG+AGG + tig0018135:13617-13636 Msa1364430:CDS 55.0%
GCTGGGCAGAGGATGATGTA+CGG + tig0018135:13628-13647 Msa1364430:CDS 55.0%
CAGCGATGAGGAATGGGAAG+AGG + tig0018135:17320-17339 Msa1364430:CDS 55.0%
! TGGAGGAGTGGTTTGGACGG+TGG - tig0018135:13239-13258 None:intergenic 60.0%
CGGAGGTTCGAGAAACGTGG+TGG + tig0018135:13459-13478 Msa1364430:CDS 60.0%
GGCGAATGGGGGGATTGTGT+TGG + tig0018135:13561-13580 Msa1364430:CDS 60.0%
! GGGGGATTGTGTTGGCGGAA+GGG + tig0018135:13569-13588 Msa1364430:CDS 60.0%
! GGGGATTGTGTTGGCGGAAG+GGG + tig0018135:13570-13589 Msa1364430:CDS 60.0%
! CGGTGGTTGTGGTGGAGGAG+TGG - tig0018135:13251-13270 None:intergenic 65.0%
!! TGAGGTGGTGGCGGTGGTTG+TGG - tig0018135:13262-13281 None:intergenic 65.0%
!! GGATCTTGAGGTGGTGGCGG+TGG - tig0018135:13268-13287 None:intergenic 65.0%
! CGTGGTGGTTGCGGCGTTGA+TGG + tig0018135:13474-13493 Msa1364430:CDS 65.0%
!! GGTGGTTGCGGCGTTGATGG+AGG + tig0018135:13477-13496 Msa1364430:CDS 65.0%
! GGGGGGATTGTGTTGGCGGA+AGG + tig0018135:13568-13587 Msa1364430:CDS 65.0%
! GGTGGCGGTGGTTGTGGTGG+AGG - tig0018135:13256-13275 None:intergenic 70.0%
!! GGTGGTGGCGGTGGTTGTGG+TGG - tig0018135:13259-13278 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0018135 gene 13045 17579 13045 ID=Msa1364430;Name=Msa1364430
tig0018135 mRNA 13045 17579 13045 ID=Msa1364430-mRNA-1;Parent=Msa1364430;Name=Msa1364430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=178|0.71|0.62|1|1|1|8|0|594
tig0018135 exon 13045 13714 13045 ID=Msa1364430-mRNA-1:exon:13995;Parent=Msa1364430-mRNA-1
tig0018135 exon 13935 14034 13935 ID=Msa1364430-mRNA-1:exon:13996;Parent=Msa1364430-mRNA-1
tig0018135 exon 14772 14919 14772 ID=Msa1364430-mRNA-1:exon:13997;Parent=Msa1364430-mRNA-1
tig0018135 exon 15011 15146 15011 ID=Msa1364430-mRNA-1:exon:13998;Parent=Msa1364430-mRNA-1
tig0018135 exon 15774 16126 15774 ID=Msa1364430-mRNA-1:exon:13999;Parent=Msa1364430-mRNA-1
tig0018135 exon 16665 16985 16665 ID=Msa1364430-mRNA-1:exon:14000;Parent=Msa1364430-mRNA-1
tig0018135 exon 17260 17341 17260 ID=Msa1364430-mRNA-1:exon:14001;Parent=Msa1364430-mRNA-1
tig0018135 exon 17427 17579 17427 ID=Msa1364430-mRNA-1:exon:14002;Parent=Msa1364430-mRNA-1
tig0018135 five_prime_UTR 13045 13222 13045 ID=Msa1364430-mRNA-1:five_prime_utr;Parent=Msa1364430-mRNA-1
tig0018135 CDS 13223 13714 13223 ID=Msa1364430-mRNA-1:cds;Parent=Msa1364430-mRNA-1
tig0018135 CDS 13935 14034 13935 ID=Msa1364430-mRNA-1:cds;Parent=Msa1364430-mRNA-1
tig0018135 CDS 14772 14919 14772 ID=Msa1364430-mRNA-1:cds;Parent=Msa1364430-mRNA-1
tig0018135 CDS 15011 15146 15011 ID=Msa1364430-mRNA-1:cds;Parent=Msa1364430-mRNA-1
tig0018135 CDS 15774 16126 15774 ID=Msa1364430-mRNA-1:cds;Parent=Msa1364430-mRNA-1
tig0018135 CDS 16665 16985 16665 ID=Msa1364430-mRNA-1:cds;Parent=Msa1364430-mRNA-1
tig0018135 CDS 17260 17341 17260 ID=Msa1364430-mRNA-1:cds;Parent=Msa1364430-mRNA-1
tig0018135 CDS 17427 17579 17427 ID=Msa1364430-mRNA-1:cds;Parent=Msa1364430-mRNA-1
Gene Sequence

>Msa1364430

ATGCAAATTGACACCACCGTCCAAACCACTCCTCCACCACAACCACCGCCACCACCTCAAGATCCAACACCAAATCGTCCCAAATCCAACCCTCGAAAGCGAAAAAAAGATGTTAATTCGCGGACTCCCGAAGAGAAACAAGCGCAAATCGAAACCCTAGAAAAAGAGCTCGAAGGGTTGTTTGCTTATTACAGAGGGGTTTTGGCTCAGAAAGTTGTGATTGACCTTAAGCAATGCGGAGGTTCGAGAAACGTGGTGGTTGCGGCGTTGATGGAGGAGAGTGAGCTTCCGTTGTCGAAGCTTGTTGATGAGATTTATGAGAAGCTGAATTGTGAAGTGGCGAATGGGGGGATTGTGTTGGCGGAAGGGGTTAATTCAGCTTTGGTGAAGAGTAGTGTGTTGTTTGCTGGGCAGAGGATGATGTACGGAATTCCCAATGCTGATGCTGATATTTTGGAAGATCATTCTGATTCATGTCTTTGGTGTTGGGAGACTAGGGAGGTTAAATTGTTGCCGAAATCTGTTCGAGGAGAGCTTGTTATTCGACGCACTTGTCGGAAAAAGATCCACGACAGGATCATGGCTGTATCTGAAATGATTGCGTCACTGAAGAAACAAGAAAGCGAGCCTAATTATAGTCAAAACTTAATCAAGGCCTCTAAAAAGCTGAGTAAAACTTCTACTGAGGTTGACATTCGCATGATAGTTGAAGGCTTGTTGCAGAAAAACAATGAAGACATGGATAAGAAAAAAGCTAACCAAGAAGAAAAATTGCTAATTAAACAGTTGGATAGAAATAGAAGAGAAGCTGAGAAAGAAAGAGAGAAAGAGAAAGAAAAAGAAAGCCTACAATGTGAACTGCAAACAATTGCCATTGAAACAAGTTCAAAGTTGTCCCAAGGTGAGGCAAAAACTGATGAGAAATGTTGCGAACAGAGGAAACAACAAAAGAAGCAAGCAGAGGAAGCAGAAAAAGATCAGCGGCGTCGAGAAAAAGAAGAAGCTGAATTAAAAAAGAAACGTAGTTTACAAAAGCAAGTCTCAATTATGGAGCGTTTTCTCAAAAGAAGTAAACCTAATCCCTCTGTTCAGAGCGACAAAGTTTCAACTGAGCCCACTGCAGATGATTTGTTAAGCAGCAAGAATGAGAGTGTGTCTATGTCAGCTACTCTTTCAATGGATAGTGTTCTTGCATCAAGTAGTGATATTAAGCCTGAGGATCTTCGCAAGTCACACTTTCATTTATGGCGCTCTTTAGGACAATCAATTCGCTCAAACAGAAAACAGAGATGGGGTTTACGACAGAATCCCAAGACTGAAGCTTTTAACAAACTTAAGCTCACAGATACTAAATCTGCAATTCATGAGGATGAGTTAGGCACCGAAAAGGATGCAGACCGATTAGGAGAAAGTAGTCCAGATGGTAATTCATGCTCAATGAATGCAGACAGTACCCATCTTGATGCCAAGAAGTACTATCGAGGAAGGCAATTATTGCAGTTTGATAATACTCCTAGACCAGCCTTTTATGGTTTTTGGCCCGTTAAAAGTCATGTTGTTGGAGGACGTCATCCATTAAGGAAGGATCCAAGCGTTGATTATGTTGTCAGCAGCGATGAGGAATGGGAAGAGGAGGAGCCTGGTGAAAGTCTTTCAGATTGTGAGAAAGATTGTGAGAAAGATGAAGAGGAATGTCAAGAGGAAGGTTCAAAATCTGATGGAGAAAGTGAAGATGGATTCTTTGTACCAGATGGGTATCTCTCAGATGATGAGGTAGAGGTTTGA

Protein sequence

>Msa1364430

MQIDTTVQTTPPPQPPPPPQDPTPNRPKSNPRKRKKDVNSRTPEEKQAQIETLEKELEGLFAYYRGVLAQKVVIDLKQCGGSRNVVVAALMEESELPLSKLVDEIYEKLNCEVANGGIVLAEGVNSALVKSSVLFAGQRMMYGIPNADADILEDHSDSCLWCWETREVKLLPKSVRGELVIRRTCRKKIHDRIMAVSEMIASLKKQESEPNYSQNLIKASKKLSKTSTEVDIRMIVEGLLQKNNEDMDKKKANQEEKLLIKQLDRNRREAEKEREKEKEKESLQCELQTIAIETSSKLSQGEAKTDEKCCEQRKQQKKQAEEAEKDQRRREKEEAELKKKRSLQKQVSIMERFLKRSKPNPSVQSDKVSTEPTADDLLSSKNESVSMSATLSMDSVLASSSDIKPEDLRKSHFHLWRSLGQSIRSNRKQRWGLRQNPKTEAFNKLKLTDTKSAIHEDELGTEKDADRLGESSPDGNSCSMNADSTHLDAKKYYRGRQLLQFDNTPRPAFYGFWPVKSHVVGGRHPLRKDPSVDYVVSSDEEWEEEEPGESLSDCEKDCEKDEEECQEEGSKSDGESEDGFFVPDGYLSDDEVEV*