Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0342850 | XP_003626150.1 | 99.034 | 207 | 2 | 0 | 1 | 207 | 1 | 207 | 2.28e-147 | 418 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0342850 | sp|P41129|RL132_BRANA | 85.922 | 206 | 29 | 0 | 2 | 207 | 1 | 206 | 3.23e-131 | 370 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0342850 | G7KWF6 | 99.034 | 207 | 2 | 0 | 1 | 207 | 1 | 207 | 1.09e-147 | 418 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000100 | Msa0342850 | 0.804000 | 2.665414e-49 | -8.615850e-47 |
Msa0002750 | Msa0342850 | 0.839346 | 1.673941e-57 | -8.615850e-47 |
Msa0002790 | Msa0342850 | 0.822218 | 2.665024e-53 | -8.615850e-47 |
Msa0015440 | Msa0342850 | 0.801463 | 8.900023e-49 | -8.615850e-47 |
Msa0032780 | Msa0342850 | 0.812547 | 4.012275e-51 | -8.615850e-47 |
Msa0044890 | Msa0342850 | 0.861961 | 7.100251e-64 | -8.615850e-47 |
Msa0068970 | Msa0342850 | 0.858992 | 5.626636e-63 | -8.615850e-47 |
Msa0087910 | Msa0342850 | 0.847596 | 1.046600e-59 | -8.615850e-47 |
Msa0114600 | Msa0342850 | 0.819123 | 1.369976e-52 | -8.615850e-47 |
Msa0129130 | Msa0342850 | 0.801550 | 8.540880e-49 | -8.615850e-47 |
Msa0129660 | Msa0342850 | 0.813471 | 2.517295e-51 | -8.615850e-47 |
Msa0183090 | Msa0342850 | 0.824152 | 9.424173e-54 | -8.615850e-47 |
Msa0184650 | Msa0342850 | 0.874998 | 4.356830e-68 | -8.615850e-47 |
Msa0186740 | Msa0342850 | 0.855137 | 7.717301e-62 | -8.615850e-47 |
Msa0194940 | Msa0342850 | 0.841346 | 5.023629e-58 | -8.615850e-47 |
Msa0210330 | Msa0342850 | 0.855931 | 4.529308e-62 | -8.615850e-47 |
Msa0210360 | Msa0342850 | 0.849091 | 4.040064e-60 | -8.615850e-47 |
Msa0222730 | Msa0342850 | 0.869948 | 2.110562e-66 | -8.615850e-47 |
Msa0223950 | Msa0342850 | 0.853526 | 2.253904e-61 | -8.615850e-47 |
Msa0250820 | Msa0342850 | 0.894267 | 2.895847e-75 | -8.615850e-47 |
Msa0250870 | Msa0342850 | 0.869435 | 3.104144e-66 | -8.615850e-47 |
Msa0264010 | Msa0342850 | 0.895765 | 7.022416e-76 | -8.615850e-47 |
Msa0265200 | Msa0342850 | 0.833986 | 3.890103e-56 | -8.615850e-47 |
Msa0289580 | Msa0342850 | 0.830983 | 2.159008e-55 | -8.615850e-47 |
Msa0289610 | Msa0342850 | 0.827642 | 1.397624e-54 | -8.615850e-47 |
Msa0312210 | Msa0342850 | 0.828340 | 9.494214e-55 | -8.615850e-47 |
Msa0327300 | Msa0342850 | 0.831334 | 1.771045e-55 | -8.615850e-47 |
Msa0327330 | Msa0342850 | 0.815634 | 8.359207e-52 | -8.615850e-47 |
Msa0342850 | Msa0426250 | 0.843606 | 1.263851e-58 | -8.615850e-47 |
Msa0342850 | Msa0482200 | 0.813104 | 3.030243e-51 | -8.615850e-47 |
Msa0342850 | Msa0483110 | 0.819676 | 1.024887e-52 | -8.615850e-47 |
Msa0342850 | Msa0486070 | 0.869043 | 4.161303e-66 | -8.615850e-47 |
Msa0342850 | Msa0529900 | 0.809667 | 1.689500e-50 | -8.615850e-47 |
Msa0342850 | Msa0544720 | 0.846871 | 1.653640e-59 | -8.615850e-47 |
Msa0342850 | Msa0554210 | 0.818278 | 2.131135e-52 | -8.615850e-47 |
Msa0342850 | Msa0557720 | 0.851678 | 7.592014e-61 | -8.615850e-47 |
Msa0342850 | Msa0608260 | 0.844745 | 6.248025e-59 | -8.615850e-47 |
Msa0342850 | Msa0653060 | 0.828942 | 6.791328e-55 | -8.615850e-47 |
Msa0342850 | Msa0691330 | 0.852486 | 4.472883e-61 | -8.615850e-47 |
Msa0342850 | Msa0848240 | 0.823453 | 1.373882e-53 | -8.615850e-47 |
Msa0342850 | Msa0930490 | 0.829779 | 4.251861e-55 | -8.615850e-47 |
Msa0342850 | Msa1012740 | 0.805488 | 1.302909e-49 | -8.615850e-47 |
Msa0342850 | Msa1012770 | 0.833856 | 4.192890e-56 | -8.615850e-47 |
Msa0342850 | Msa1040160 | 0.861263 | 1.159825e-63 | -8.615850e-47 |
Msa0342850 | Msa1050100 | 0.801513 | 8.691674e-49 | -8.615850e-47 |
Msa0342850 | Msa1078870 | 0.842467 | 2.540247e-58 | -8.615850e-47 |
Msa0342850 | Msa1078980 | 0.849850 | 2.481212e-60 | -8.615850e-47 |
Msa0342850 | Msa1079910 | 0.815010 | 1.150934e-51 | -8.615850e-47 |
Msa0342850 | Msa1079920 | 0.895662 | 7.748373e-76 | -8.615850e-47 |
Msa0342850 | Msa1083370 | 0.862940 | 3.550298e-64 | -8.615850e-47 |
Msa0342850 | Msa1088490 | 0.805787 | 1.127879e-49 | -8.615850e-47 |
Msa0342850 | Msa1124850 | 0.882066 | 1.422630e-70 | -8.615850e-47 |
Msa0342850 | Msa1128120 | 0.992184 | 8.664865e-192 | -8.615850e-47 |
Msa0342850 | Msa1167540 | 0.850189 | 1.994505e-60 | -8.615850e-47 |
Msa0342850 | Msa1167550 | 0.855772 | 5.040719e-62 | -8.615850e-47 |
Msa0342850 | Msa1169180 | 0.851630 | 7.832748e-61 | -8.615850e-47 |
Msa0342850 | Msa1215820 | 0.846697 | 1.845293e-59 | -8.615850e-47 |
Msa0342850 | Msa1225720 | 0.814696 | 1.350750e-51 | -8.615850e-47 |
Msa0342850 | Msa1258390 | 0.829084 | 6.272984e-55 | -8.615850e-47 |
Msa0342850 | Msa1295150 | 0.814109 | 1.821105e-51 | -8.615850e-47 |
Msa0342850 | Msa1295170 | 0.842951 | 1.889673e-58 | -8.615850e-47 |
Msa0342850 | Msa1311400 | 0.822239 | 2.634715e-53 | -8.615850e-47 |
Msa0342850 | Msa1332250 | 0.831499 | 1.612962e-55 | -8.615850e-47 |
Msa0342850 | Msa1341130 | 0.820206 | 7.750709e-53 | -8.615850e-47 |
Msa0342850 | Msa1366180 | 0.819507 | 1.119936e-52 | -8.615850e-47 |
Msa0342850 | Msa1418690 | 0.835743 | 1.405201e-56 | -8.615850e-47 |
Msa0342850 | Msa1418760 | 0.805352 | 1.391324e-49 | -8.615850e-47 |
Msa0342850 | Msa1426120 | 0.848543 | 5.733270e-60 | -8.615850e-47 |
Msa0342850 | Msa1444240 | 0.826995 | 1.997666e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0342850 | MtrunA17_Chr7g0271401 | 99.034 | 207 | 2 | 0 | 1 | 207 | 1 | 207 | 2.09e-151 | 418 |
Msa0342850 | MtrunA17_Chr5g0409231 | 98.551 | 207 | 3 | 0 | 1 | 207 | 1 | 207 | 1.03e-150 | 416 |
Msa0342850 | MtrunA17_Chr1g0155011 | 97.585 | 207 | 5 | 0 | 1 | 207 | 1 | 207 | 2.47e-149 | 413 |
Msa0342850 | MtrunA17_Chr8g0369561 | 86.538 | 52 | 7 | 0 | 133 | 184 | 6 | 57 | 5.28e-27 | 97.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0342850 | AT3G49010.3 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.48e-126 | 355 |
Msa0342850 | AT3G49010.6 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.48e-126 | 355 |
Msa0342850 | AT3G49010.1 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.48e-126 | 355 |
Msa0342850 | AT3G49010.2 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.48e-126 | 355 |
Msa0342850 | AT3G49010.7 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.48e-126 | 355 |
Msa0342850 | AT3G49010.4 | 86.387 | 191 | 24 | 1 | 2 | 192 | 1 | 189 | 4.17e-123 | 347 |
Msa0342850 | AT5G23900.1 | 85.484 | 186 | 27 | 0 | 2 | 187 | 1 | 186 | 1.72e-119 | 338 |
Msa0342850 | AT3G48960.1 | 77.083 | 192 | 44 | 0 | 2 | 193 | 1 | 192 | 4.73e-109 | 311 |
Msa0342850 | AT3G49010.5 | 61.257 | 191 | 21 | 1 | 2 | 192 | 1 | 138 | 3.91e-78 | 231 |
Find 70 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATGAAATGAAGGCATTTA+AGG | 0.167170 | 3_1:-870575 | Msa0342850:CDS |
CGTCTTCTCGTCTTCCTTGC+AGG | 0.238053 | 3_1:+872259 | None:intergenic |
TGTTGGTTTAACTAGCATTC+TGG | 0.306744 | 3_1:-870309 | Msa0342850:three_prime_UTR |
AAGAGTAATGTGGCAGAAAA+TGG | 0.317572 | 3_1:+872906 | None:intergenic |
TTGACCTTGCGTGCACGTCT+TGG | 0.342253 | 3_1:+870839 | None:intergenic |
GCGAACAAACAAACGCCATT+TGG | 0.357834 | 3_1:-870530 | Msa0342850:CDS |
CGAACAAACAAACGCCATTT+GGG | 0.361720 | 3_1:-870529 | Msa0342850:CDS |
AGTGGTCCAGCTGTAGGCCT+TGG | 0.374314 | 3_1:+872089 | None:intergenic |
TGCTTGCGGAAGTGTTCATT+AGG | 0.386045 | 3_1:+872316 | None:intergenic |
TGACCTTGCGTGCACGTCTT+GGG | 0.387927 | 3_1:+870840 | None:intergenic |
TGAGTCTGTCCATGAACAAT+AGG | 0.403921 | 3_1:+872062 | None:intergenic |
AGAAATACAACATGAAACTA+AGG | 0.404501 | 3_1:-872040 | Msa0342850:CDS |
CTCGGCAGCCCTCTTCAGTC+TGG | 0.408929 | 3_1:+870504 | None:intergenic |
AGAAAATGGAGAGTAGGGTT+AGG | 0.414856 | 3_1:+872920 | None:intergenic |
CCACTCAGGCCTATTGTTCA+TGG | 0.419917 | 3_1:-872071 | Msa0342850:CDS |
AGACAAGAAGTGAAAACTTA+AGG | 0.420622 | 3_1:-870470 | Msa0342850:exon |
CTTCTCCCTTGAGGAGTTGA+AGG | 0.436371 | 3_1:-872006 | Msa0342850:intron |
GTCTTGCAATAACTATCATA+AGG | 0.439762 | 3_1:+870426 | None:intergenic |
GTAGCATTTGCTAGTTCCTC+AGG | 0.441712 | 3_1:+870664 | None:intergenic |
GAAAATGGAGAGTAGGGTTA+GGG | 0.457489 | 3_1:+872921 | None:intergenic |
TCTTCAGTCTGGCACCCAAA+TGG | 0.461938 | 3_1:+870515 | None:intergenic |
GCTTGCGGAAGTGTTCATTA+GGG | 0.463786 | 3_1:+872317 | None:intergenic |
TAAGATTACAAATGAAATGA+AGG | 0.465235 | 3_1:-870584 | Msa0342850:CDS |
GTATGGCTATTCAAGTTTGT+TGG | 0.466014 | 3_1:-870326 | Msa0342850:three_prime_UTR |
GATGGCTTCTCCCTCACAAT+TGG | 0.470493 | 3_1:+870619 | None:intergenic |
GAGGGCTGCCGAGGCAGAGA+AGG | 0.474906 | 3_1:-870494 | Msa0342850:CDS |
CTTGTCTTCCTTCTCTGCCT+CGG | 0.482926 | 3_1:+870486 | None:intergenic |
GTGGTCCAGCTGTAGGCCTT+GGG | 0.485461 | 3_1:+872090 | None:intergenic |
GTGGCAGAAAATGGAGAGTA+GGG | 0.486654 | 3_1:+872915 | None:intergenic |
TCTTGCAATAACTATCATAA+GGG | 0.491378 | 3_1:+870427 | None:intergenic |
TGTGGCAGAAAATGGAGAGT+AGG | 0.497248 | 3_1:+872914 | None:intergenic |
CTTGCAGACCTTCCAAGGAT+CGG | 0.513686 | 3_1:+870909 | None:intergenic |
GCAAATGCTACACAGGTTCA+AGG | 0.515568 | 3_1:-870652 | Msa0342850:CDS |
TTCTCGTCTTCCTTGCAGGT+TGG | 0.518598 | 3_1:+872263 | None:intergenic |
TCGACAGAAATACCAATAGT+TGG | 0.524260 | 3_1:+870947 | None:intergenic |
TGTTTACCTTCAACTCCTCA+AGG | 0.536157 | 3_1:+872000 | None:intergenic |
GTTGGCTTGCAGACCTTCCA+AGG | 0.544997 | 3_1:+870904 | None:intergenic |
CTTCCCAAGACGTGCACGCA+AGG | 0.546682 | 3_1:-870843 | Msa0342850:CDS |
ATGAACACTTCCGCAAGCAT+TGG | 0.548841 | 3_1:-872312 | Msa0342850:CDS |
ATGAAACTAAGGGCTGGTAA+AGG | 0.560135 | 3_1:-872029 | Msa0342850:CDS |
GAAATACAACATGAAACTAA+GGG | 0.563936 | 3_1:-872039 | Msa0342850:CDS |
AGGAAGACGAGAAGACGCTT+AGG | 0.564086 | 3_1:-872253 | Msa0342850:intron |
TCTTGGGAAGACGACCAACT+TGG | 0.564678 | 3_1:+870856 | None:intergenic |
AAGACGTGCACGCAAGGTCA+AGG | 0.565249 | 3_1:-870837 | Msa0342850:intron |
TACAACATGAAACTAAGGGC+TGG | 0.568361 | 3_1:-872035 | Msa0342850:CDS |
TTCATACTTACCAATTGTGA+GGG | 0.574179 | 3_1:-870629 | Msa0342850:CDS |
CAGACTGAAGAGGGCTGCCG+AGG | 0.574750 | 3_1:-870503 | Msa0342850:CDS |
GTCTGCAAGCCAACGTGCAG+AGG | 0.583501 | 3_1:-870895 | Msa0342850:CDS |
TGGTAAAGGCTTCTCCCTTG+AGG | 0.585769 | 3_1:-872015 | Msa0342850:CDS |
AGGCCTTGGGAAAATCTTCA+CGG | 0.587332 | 3_1:+872103 | None:intergenic |
GTTCATACTTACCAATTGTG+AGG | 0.591073 | 3_1:-870630 | Msa0342850:CDS |
ATTTGGGTGCCAGACTGAAG+AGG | 0.592370 | 3_1:-870513 | Msa0342850:CDS |
AAATTGCTTAGTTTGAGACA+TGG | 0.594953 | 3_1:-870374 | Msa0342850:three_prime_UTR |
GGCTGGTGATTCCACTCCTG+AGG | 0.595885 | 3_1:-870680 | Msa0342850:CDS |
GAAGACATACAAGGCCAAGT+TGG | 0.599063 | 3_1:-870870 | Msa0342850:CDS |
GGCCTACAGCTGGACCACTC+AGG | 0.602263 | 3_1:-872085 | Msa0342850:CDS |
ATCTTAACAAGCTCTACAGA+TGG | 0.608105 | 3_1:+870601 | None:intergenic |
TTTGGGTGCCAGACTGAAGA+GGG | 0.608247 | 3_1:-870512 | Msa0342850:CDS |
GGCAAAACTATGTCAAGACA+TGG | 0.612396 | 3_1:-872291 | Msa0342850:CDS |
ATTTGCTAGTTCCTCAGGAG+TGG | 0.614969 | 3_1:+870669 | None:intergenic |
CCTACTCGTGAAATCGCCGC+AGG | 0.621744 | 3_1:-872875 | Msa0342850:intron |
TGTCTTCAGCCTCTGCACGT+TGG | 0.625495 | 3_1:+870886 | None:intergenic |
GTTTACCTTCAACTCCTCAA+GGG | 0.627618 | 3_1:+872001 | None:intergenic |
GGCCTGAGTGGTCCAGCTGT+AGG | 0.635974 | 3_1:+872083 | None:intergenic |
GGAACTAGCAAATGCTACAC+AGG | 0.641783 | 3_1:-870659 | Msa0342850:CDS |
CATGGTTTAACCAACCTGCA+AGG | 0.654567 | 3_1:-872273 | Msa0342850:CDS |
CCATGAACAATAGGCCTGAG+TGG | 0.655173 | 3_1:+872071 | None:intergenic |
GGAGCAGCTGAAGAGTAATG+TGG | 0.668061 | 3_1:+872896 | None:intergenic |
CCTGCGGCGATTTCACGAGT+AGG | 0.671313 | 3_1:+872875 | None:intergenic |
GCAGAGGCTGAAGACATACA+AGG | 0.685449 | 3_1:-870879 | Msa0342850:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAAGAATATGTAATAAA+TGG | - | chr3_1:871349-871368 | Msa0342850:intron | 10.0% |
!! | TAAATTATAATAATATCATC+AGG | + | chr3_1:871437-871456 | None:intergenic | 10.0% |
!!! | CAGATTTTTTATTTGTTTTT+GGG | - | chr3_1:870512-870531 | Msa0342850:CDS | 15.0% |
!!! | AGATTTTTTATTTGTTTTTG+GGG | - | chr3_1:870513-870532 | Msa0342850:CDS | 15.0% |
!!! | AAATTCTAGATATTTACTTT+TGG | - | chr3_1:871185-871204 | Msa0342850:intron | 15.0% |
!! | AAAAACAAACTCAATTAAAT+TGG | + | chr3_1:871622-871641 | None:intergenic | 15.0% |
!!! | TTAATTGAGTTTGTTTTTTA+AGG | - | chr3_1:871624-871643 | Msa0342850:intron | 15.0% |
!!! | TTTCTTCTATTTTATAATGT+AGG | - | chr3_1:872085-872104 | Msa0342850:CDS | 15.0% |
!!! | AATTGATTATGCTTTTGAAT+TGG | - | chr3_1:870373-870392 | Msa0342850:three_prime_UTR | 20.0% |
!!! | GCAGATTTTTTATTTGTTTT+TGG | - | chr3_1:870511-870530 | Msa0342850:CDS | 20.0% |
!! | CAAAAAACAATATATCAGAA+AGG | + | chr3_1:870695-870714 | None:intergenic | 20.0% |
!!! | CTTTCTGATATATTGTTTTT+TGG | - | chr3_1:870693-870712 | Msa0342850:intron | 20.0% |
!!! | TTTGATTTATTTGTCTTGAT+GGG | - | chr3_1:870925-870944 | Msa0342850:CDS | 20.0% |
!!! | TTTTAGCATTATCAAAAAAG+TGG | - | chr3_1:871149-871168 | Msa0342850:intron | 20.0% |
!! | AAACTAAAAACTCTTAAAAC+CGG | + | chr3_1:871719-871738 | None:intergenic | 20.0% |
!!! | TTTTTACTTTACCTTTTCAA+TGG | - | chr3_1:872051-872070 | Msa0342850:CDS | 20.0% |
!! | TAAGAAATAAACCATTGAAA+AGG | + | chr3_1:872065-872084 | None:intergenic | 20.0% |
!!! | TATGACCTTTTTCTTAATTT+TGG | - | chr3_1:872298-872317 | Msa0342850:CDS | 20.0% |
!! | TAAGATTACAAATGAAATGA+AGG | - | chr3_1:872497-872516 | Msa0342850:intron | 20.0% |
!!! | TTAGCATGTTTTATTTTTCA+TGG | - | chr3_1:872800-872819 | Msa0342850:intron | 20.0% |
!!! | TAGCATGTTTTATTTTTCAT+GGG | - | chr3_1:872801-872820 | Msa0342850:intron | 20.0% |
!! | TCAAAAGCATAATCAATTGT+GGG | + | chr3_1:870371-870390 | None:intergenic | 25.0% |
!! | TTCAAAAGCATAATCAATTG+TGG | + | chr3_1:870372-870391 | None:intergenic | 25.0% |
! | TGAGAAAGAATGTATATATG+CGG | - | chr3_1:870427-870446 | Msa0342850:three_prime_UTR | 25.0% |
! | ATAAAAAATCTGCACTATTG+AGG | + | chr3_1:870504-870523 | None:intergenic | 25.0% |
!!! | GTTTTTTGGTTGATATTTGA+AGG | - | chr3_1:870707-870726 | Msa0342850:intron | 25.0% |
!! | CTTTGATTTATTTGTCTTGA+TGG | - | chr3_1:870924-870943 | Msa0342850:CDS | 25.0% |
! | AGAAATACAACATGAAACTA+AGG | - | chr3_1:871041-871060 | Msa0342850:intron | 25.0% |
! | GAAATACAACATGAAACTAA+GGG | - | chr3_1:871042-871061 | Msa0342850:intron | 25.0% |
! | AAATTGCAAGTCACTAAAAA+CGG | - | chr3_1:871248-871267 | Msa0342850:intron | 25.0% |
! | ATAGGTAAAAATACTCCATA+TGG | + | chr3_1:871587-871606 | None:intergenic | 25.0% |
!!! | TATGGAGTATTTTTACCTAT+AGG | - | chr3_1:871587-871606 | Msa0342850:intron | 25.0% |
!!! | AGTATTTTTACCTATAGGAT+TGG | - | chr3_1:871592-871611 | Msa0342850:intron | 25.0% |
! | AACTAAAAACTCTTAAAACC+GGG | + | chr3_1:871718-871737 | None:intergenic | 25.0% |
!! | ACAACTAAAGTAGATTTTGA+TGG | + | chr3_1:871755-871774 | None:intergenic | 25.0% |
! | AAATCTACTTTAGTTGTTAC+AGG | - | chr3_1:871758-871777 | Msa0342850:intron | 25.0% |
!! | AAGAAATCATGGATTATACA+AGG | + | chr3_1:871835-871854 | None:intergenic | 25.0% |
!! | AATATGATTAGTGTTTTCAG+TGG | + | chr3_1:871868-871887 | None:intergenic | 25.0% |
! | TTCAAATTTATCAGCAATGA+CGG | + | chr3_1:872326-872345 | None:intergenic | 25.0% |
! | GCATTATTCTTAATTTCTTC+TGG | - | chr3_1:872360-872379 | Msa0342850:intron | 25.0% |
!!! | AAATGAAATGAAGGCATTTA+AGG | - | chr3_1:872506-872525 | Msa0342850:intron | 25.0% |
! | TCTTGCAATAACTATCATAA+GGG | + | chr3_1:872657-872676 | None:intergenic | 25.0% |
GCATATATACATTCTTTCTC+AGG | + | chr3_1:870428-870447 | None:intergenic | 30.0% | |
! | ACTATTGAGGTTTTACGAAT+TGG | + | chr3_1:870491-870510 | None:intergenic | 30.0% |
!!! | TTGTTTTTGGGGAAATGATA+TGG | - | chr3_1:870524-870543 | Msa0342850:CDS | 30.0% |
! | TTGGTTGATATTTGAAGGTA+AGG | - | chr3_1:870712-870731 | Msa0342850:intron | 30.0% |
TTTGAAGGTAAGGTGAAAAA+TGG | - | chr3_1:870722-870741 | Msa0342850:intron | 30.0% | |
TAAAAATACTCCATATGGAC+AGG | + | chr3_1:871582-871601 | None:intergenic | 30.0% | |
!!! | AGTTTGTTTTTTAAGGCCTA+TGG | - | chr3_1:871631-871650 | Msa0342850:intron | 30.0% |
! | AAATCATGGATTATACAAGG+AGG | + | chr3_1:871832-871851 | None:intergenic | 30.0% |
GTGTATAAGCAAAGAAATCA+TGG | + | chr3_1:871846-871865 | None:intergenic | 30.0% | |
TCACAACTGAAGAGAATATT+CGG | + | chr3_1:871913-871932 | None:intergenic | 30.0% | |
GACAGAATTGAATATGAAAC+AGG | + | chr3_1:871936-871955 | None:intergenic | 30.0% | |
! | TATTTTATAATGTAGGCTGC+TGG | - | chr3_1:872092-872111 | Msa0342850:CDS | 30.0% |
CGGTACCAAAATTAAGAAAA+AGG | + | chr3_1:872306-872325 | None:intergenic | 30.0% | |
TTCATACTTACCAATTGTGA+GGG | - | chr3_1:872452-872471 | Msa0342850:intron | 30.0% | |
AGACAAGAAGTGAAAACTTA+AGG | - | chr3_1:872611-872630 | Msa0342850:intron | 30.0% | |
GTCTTGCAATAACTATCATA+AGG | + | chr3_1:872658-872677 | None:intergenic | 30.0% | |
! | AAATTGCTTAGTTTGAGACA+TGG | - | chr3_1:872707-872726 | Msa0342850:intron | 30.0% |
!!! | TGCTGTTATTTTGTGAAGTA+TGG | - | chr3_1:872738-872757 | Msa0342850:intron | 30.0% |
TGCAGACAAAATTCTTTGAA+GGG | - | chr3_1:872843-872862 | Msa0342850:intron | 30.0% | |
AAGAGTAATGTGGCAGAAAA+TGG | + | chr3_1:870178-870197 | None:intergenic | 35.0% | |
AGTTGTGATTGGAATGTGAA+AGG | + | chr3_1:870253-870272 | None:intergenic | 35.0% | |
ACAGTTCTGTGTAGCAAAAA+GGG | + | chr3_1:870402-870421 | None:intergenic | 35.0% | |
AACAGTTCTGTGTAGCAAAA+AGG | + | chr3_1:870403-870422 | None:intergenic | 35.0% | |
ACACATGGATGGATGATTTA+TGG | + | chr3_1:870462-870481 | None:intergenic | 35.0% | |
AAATCATCCATCCATGTGTT+TGG | - | chr3_1:870463-870482 | Msa0342850:exon | 35.0% | |
! | TAAGATGAGAAAAGCGGATT+CGG | + | chr3_1:870601-870620 | None:intergenic | 35.0% |
! | GAGATCTAAGATGAGAAAAG+CGG | + | chr3_1:870607-870626 | None:intergenic | 35.0% |
CAAGCTCTATGTGAAATTAC+AGG | - | chr3_1:871404-871423 | Msa0342850:intron | 35.0% | |
AACCCTGACAATCAAGTTAT+AGG | - | chr3_1:871681-871700 | Msa0342850:intron | 35.0% | |
GACCTATAACTTGATTGTCA+GGG | + | chr3_1:871686-871705 | None:intergenic | 35.0% | |
AGACCTATAACTTGATTGTC+AGG | + | chr3_1:871687-871706 | None:intergenic | 35.0% | |
TACTAGATGCACTCAAACTA+AGG | + | chr3_1:871994-872013 | None:intergenic | 35.0% | |
! | ATAGTTGGAGCAAGCTTTTT+GGG | + | chr3_1:872122-872141 | None:intergenic | 35.0% |
! | AATAGTTGGAGCAAGCTTTT+TGG | + | chr3_1:872123-872142 | None:intergenic | 35.0% |
! | AAAAAGCTTGCTCCAACTAT+TGG | - | chr3_1:872122-872141 | Msa0342850:intron | 35.0% |
TCGACAGAAATACCAATAGT+TGG | + | chr3_1:872137-872156 | None:intergenic | 35.0% | |
CAGCCTGGAAATAAAAAACA+GGG | + | chr3_1:872386-872405 | None:intergenic | 35.0% | |
GTTCATACTTACCAATTGTG+AGG | - | chr3_1:872451-872470 | Msa0342850:intron | 35.0% | |
ATCTTAACAAGCTCTACAGA+TGG | + | chr3_1:872483-872502 | None:intergenic | 35.0% | |
! | GTATGGCTATTCAAGTTTGT+TGG | - | chr3_1:872755-872774 | Msa0342850:intron | 35.0% |
!! | TGTTGGTTTAACTAGCATTC+TGG | - | chr3_1:872772-872791 | Msa0342850:intron | 35.0% |
CTGCAGACAAAATTCTTTGA+AGG | - | chr3_1:872842-872861 | Msa0342850:intron | 35.0% | |
! | GACAAAATTCTTTGAAGGGT+TGG | - | chr3_1:872847-872866 | Msa0342850:intron | 35.0% |
GATTGGAATGTGAAAGGAGA+AGG | + | chr3_1:870247-870266 | None:intergenic | 40.0% | |
CACATTCCAATCACAACTCT+TGG | - | chr3_1:870255-870274 | Msa0342850:three_prime_UTR | 40.0% | |
! | AAAGCACCAAGAGTTGTGAT+TGG | + | chr3_1:870264-870283 | None:intergenic | 40.0% |
!!! | ACAACTCTTGGTGCTTTTCT+CGG | - | chr3_1:870267-870286 | Msa0342850:three_prime_UTR | 40.0% |
AATCGCAAAATGCTAGCTGA+TGG | - | chr3_1:870317-870336 | Msa0342850:three_prime_UTR | 40.0% | |
!! | CATAGTTTTGCCAATGCTTG+CGG | + | chr3_1:870782-870801 | None:intergenic | 40.0% |
GGCAAAACTATGTCAAGACA+TGG | - | chr3_1:870790-870809 | Msa0342850:intron | 40.0% | |
! | ATTTTCAGCTCGTCAGAAGA+AGG | - | chr3_1:870955-870974 | Msa0342850:CDS | 40.0% |
TGAGTCTGTCCATGAACAAT+AGG | + | chr3_1:871022-871041 | None:intergenic | 40.0% | |
TACAACATGAAACTAAGGGC+TGG | - | chr3_1:871046-871065 | Msa0342850:intron | 40.0% | |
! | ATGAAACTAAGGGCTGGTAA+AGG | - | chr3_1:871052-871071 | Msa0342850:intron | 40.0% |
GTTTACCTTCAACTCCTCAA+GGG | + | chr3_1:871083-871102 | None:intergenic | 40.0% | |
TGTTTACCTTCAACTCCTCA+AGG | + | chr3_1:871084-871103 | None:intergenic | 40.0% | |
! | TGTATTGGTGTGGATTGCAA+AGG | + | chr3_1:871497-871516 | None:intergenic | 40.0% |
TTGCAATCCACACCAATACA+TGG | - | chr3_1:871497-871516 | Msa0342850:intron | 40.0% | |
GCAAACGCAATTCCATGTAT+TGG | + | chr3_1:871512-871531 | None:intergenic | 40.0% | |
ACTTGACAACAGGTTTGTAC+TGG | + | chr3_1:871552-871571 | None:intergenic | 40.0% | |
AGTACAAACCTGTTGTCAAG+TGG | - | chr3_1:871551-871570 | Msa0342850:intron | 40.0% | |
AATACTCCATATGGACAGGT+TGG | + | chr3_1:871578-871597 | None:intergenic | 40.0% | |
! | AATTGGCTAGCCAATCCTAT+AGG | + | chr3_1:871605-871624 | None:intergenic | 40.0% |
!!! | TGTTTTTTAAGGCCTATGGC+TGG | - | chr3_1:871635-871654 | Msa0342850:intron | 40.0% |
TGATTGTCAGGGTTCCTAAA+CGG | + | chr3_1:871675-871694 | None:intergenic | 40.0% | |
AAAACTCTTAAAACCGGGCA+GGG | + | chr3_1:871713-871732 | None:intergenic | 40.0% | |
AAAAACTCTTAAAACCGGGC+AGG | + | chr3_1:871714-871733 | None:intergenic | 40.0% | |
!! | GTAGATTTTGATGGTCATGC+TGG | + | chr3_1:871746-871765 | None:intergenic | 40.0% |
GGTCAAGGTAATGCAAATTG+CGG | - | chr3_1:872259-872278 | Msa0342850:CDS | 40.0% | |
!!! | TGGCCCTGTTTTTTATTTCC+AGG | - | chr3_1:872380-872399 | Msa0342850:intron | 40.0% |
CCAGCCTGGAAATAAAAAAC+AGG | + | chr3_1:872387-872406 | None:intergenic | 40.0% | |
!!! | CCTGTTTTTTATTTCCAGGC+TGG | - | chr3_1:872384-872403 | Msa0342850:intron | 40.0% |
CGAACAAACAAACGCCATTT+GGG | - | chr3_1:872552-872571 | Msa0342850:intron | 40.0% | |
GTGGCAGAAAATGGAGAGTA+GGG | + | chr3_1:870169-870188 | None:intergenic | 45.0% | |
TGTGGCAGAAAATGGAGAGT+AGG | + | chr3_1:870170-870189 | None:intergenic | 45.0% | |
AAGGAGAAGGTGAGAGAATG+AGG | + | chr3_1:870234-870253 | None:intergenic | 45.0% | |
!!! | CTTGGTGCTTTTCTCGGATT+CGG | - | chr3_1:870273-870292 | Msa0342850:three_prime_UTR | 45.0% |
! | GCTTTTCTCGGATTCGGATT+CGG | - | chr3_1:870279-870298 | Msa0342850:three_prime_UTR | 45.0% |
TGGCAAAGCTCAACCATTGA+TGG | - | chr3_1:870337-870356 | Msa0342850:three_prime_UTR | 45.0% | |
!! | ATTGGTGCCAAACACATGGA+TGG | + | chr3_1:870473-870492 | None:intergenic | 45.0% |
!! | ACGAATTGGTGCCAAACACA+TGG | + | chr3_1:870477-870496 | None:intergenic | 45.0% |
ATTCATCATAGGGTGACTGC+AGG | - | chr3_1:870555-870574 | Msa0342850:CDS | 45.0% | |
! | GAAAAGCGGATTCGGATTCA+CGG | + | chr3_1:870593-870612 | None:intergenic | 45.0% |
!! | GCTTGCGGAAGTGTTCATTA+GGG | + | chr3_1:870767-870786 | None:intergenic | 45.0% |
!! | TGCTTGCGGAAGTGTTCATT+AGG | + | chr3_1:870768-870787 | None:intergenic | 45.0% |
ATGAACACTTCCGCAAGCAT+TGG | - | chr3_1:870769-870788 | Msa0342850:intron | 45.0% | |
CATGGTTTAACCAACCTGCA+AGG | - | chr3_1:870808-870827 | Msa0342850:intron | 45.0% | |
AGGCCTTGGGAAAATCTTCA+CGG | + | chr3_1:870981-871000 | None:intergenic | 45.0% | |
! | CGCAATTCCATGTATTGGTG+TGG | + | chr3_1:871507-871526 | None:intergenic | 45.0% |
CCTAAACGGCATACGAGTTA+AGG | + | chr3_1:871661-871680 | None:intergenic | 45.0% | |
! | CCTTAACTCGTATGCCGTTT+AGG | - | chr3_1:871658-871677 | Msa0342850:intron | 45.0% |
CACCAATCTCCAATGTACGT+AGG | - | chr3_1:871802-871821 | Msa0342850:intron | 45.0% | |
CACCTACGTACATTGGAGAT+TGG | + | chr3_1:871807-871826 | None:intergenic | 45.0% | |
!! | CTTCCAAGGATCGGTTTTTG+CGG | + | chr3_1:872166-872185 | None:intergenic | 45.0% |
GAAGACATACAAGGCCAAGT+TGG | - | chr3_1:872211-872230 | Msa0342850:intron | 45.0% | |
! | ATTTGCTAGTTCCTCAGGAG+TGG | + | chr3_1:872415-872434 | None:intergenic | 45.0% |
! | GTAGCATTTGCTAGTTCCTC+AGG | + | chr3_1:872420-872439 | None:intergenic | 45.0% |
GGAACTAGCAAATGCTACAC+AGG | - | chr3_1:872422-872441 | Msa0342850:intron | 45.0% | |
GCAAATGCTACACAGGTTCA+AGG | - | chr3_1:872429-872448 | Msa0342850:intron | 45.0% | |
GCGAACAAACAAACGCCATT+TGG | - | chr3_1:872551-872570 | Msa0342850:intron | 45.0% | |
GGAGCAGCTGAAGAGTAATG+TGG | + | chr3_1:870188-870207 | None:intergenic | 50.0% | |
! | GTGAGAGAATGAGGTACCTG+CGG | + | chr3_1:870225-870244 | None:intergenic | 50.0% |
CGGATTCGGATTCGGATTCA+CGG | - | chr3_1:870287-870306 | Msa0342850:three_prime_UTR | 50.0% | |
!! | TGGAGCGCTGGATTCATCAT+AGG | - | chr3_1:870544-870563 | Msa0342850:CDS | 50.0% |
!! | GGAGCGCTGGATTCATCATA+GGG | - | chr3_1:870545-870564 | Msa0342850:CDS | 50.0% |
TTCTCGTCTTCCTTGCAGGT+TGG | + | chr3_1:870821-870840 | None:intergenic | 50.0% | |
AGGAAGACGAGAAGACGCTT+AGG | - | chr3_1:870828-870847 | Msa0342850:intron | 50.0% | |
! | AGGCCGTGAAGATTTTCCCA+AGG | - | chr3_1:870975-870994 | Msa0342850:CDS | 50.0% |
! | ATTTTCCCAAGGCCTACAGC+TGG | - | chr3_1:870986-871005 | Msa0342850:intron | 50.0% |
CCATGAACAATAGGCCTGAG+TGG | + | chr3_1:871013-871032 | None:intergenic | 50.0% | |
CCACTCAGGCCTATTGTTCA+TGG | - | chr3_1:871010-871029 | Msa0342850:intron | 50.0% | |
TGGTAAAGGCTTCTCCCTTG+AGG | - | chr3_1:871066-871085 | Msa0342850:intron | 50.0% | |
CTTCTCCCTTGAGGAGTTGA+AGG | - | chr3_1:871075-871094 | Msa0342850:intron | 50.0% | |
! | AGGTTGGTCCACTTGACAAC+AGG | + | chr3_1:871562-871581 | None:intergenic | 50.0% |
AGTGGACCAACCTGTCCATA+TGG | - | chr3_1:871569-871588 | Msa0342850:intron | 50.0% | |
TACGAGTTAAGGCCAGCCAT+AGG | + | chr3_1:871650-871669 | None:intergenic | 50.0% | |
TTATAGGTCTATGCCCTGCC+CGG | - | chr3_1:871697-871716 | Msa0342850:intron | 50.0% | |
GGAGGTTCACCTACGTACAT+TGG | + | chr3_1:871814-871833 | None:intergenic | 50.0% | |
CGCAAAAACCGATCCTTGGA+AGG | - | chr3_1:872164-872183 | Msa0342850:intron | 50.0% | |
CTTGCAGACCTTCCAAGGAT+CGG | + | chr3_1:872175-872194 | None:intergenic | 50.0% | |
GCAGAGGCTGAAGACATACA+AGG | - | chr3_1:872202-872221 | Msa0342850:intron | 50.0% | |
TCTTGGGAAGACGACCAACT+TGG | + | chr3_1:872228-872247 | None:intergenic | 50.0% | |
GATGGCTTCTCCCTCACAAT+TGG | + | chr3_1:872465-872484 | None:intergenic | 50.0% | |
TCTTCAGTCTGGCACCCAAA+TGG | + | chr3_1:872569-872588 | None:intergenic | 50.0% | |
ATTTGGGTGCCAGACTGAAG+AGG | - | chr3_1:872568-872587 | Msa0342850:intron | 50.0% | |
TTTGGGTGCCAGACTGAAGA+GGG | - | chr3_1:872569-872588 | Msa0342850:intron | 50.0% | |
CTTGTCTTCCTTCTCTGCCT+CGG | + | chr3_1:872598-872617 | None:intergenic | 50.0% | |
GGGGAAATGATATGGAGCGC+TGG | - | chr3_1:870532-870551 | Msa0342850:CDS | 55.0% | |
CGTCTTCTCGTCTTCCTTGC+AGG | + | chr3_1:870825-870844 | None:intergenic | 55.0% | |
TCGCCGCAAAAACCGATCCT+TGG | - | chr3_1:872160-872179 | Msa0342850:intron | 55.0% | |
!! | GTTGGCTTGCAGACCTTCCA+AGG | + | chr3_1:872180-872199 | None:intergenic | 55.0% |
TGTCTTCAGCCTCTGCACGT+TGG | + | chr3_1:872198-872217 | None:intergenic | 55.0% | |
TGACCTTGCGTGCACGTCTT+GGG | + | chr3_1:872244-872263 | None:intergenic | 55.0% | |
TTGACCTTGCGTGCACGTCT+TGG | + | chr3_1:872245-872264 | None:intergenic | 55.0% | |
AAGACGTGCACGCAAGGTCA+AGG | - | chr3_1:872244-872263 | Msa0342850:intron | 55.0% | |
CCTGCGGCGATTTCACGAGT+AGG | + | chr3_1:870209-870228 | None:intergenic | 60.0% | |
CCTACTCGTGAAATCGCCGC+AGG | - | chr3_1:870206-870225 | Msa0342850:intron | 60.0% | |
! | GTGGGCACTGCTGCCATCAA+TGG | + | chr3_1:870353-870372 | None:intergenic | 60.0% |
GTGGTCCAGCTGTAGGCCTT+GGG | + | chr3_1:870994-871013 | None:intergenic | 60.0% | |
AGTGGTCCAGCTGTAGGCCT+TGG | + | chr3_1:870995-871014 | None:intergenic | 60.0% | |
GTCTGCAAGCCAACGTGCAG+AGG | - | chr3_1:872186-872205 | Msa0342850:intron | 60.0% | |
CTTCCCAAGACGTGCACGCA+AGG | - | chr3_1:872238-872257 | Msa0342850:intron | 60.0% | |
CAGGAGTGGAATCACCAGCC+TGG | + | chr3_1:872401-872420 | None:intergenic | 60.0% | |
GGCTGGTGATTCCACTCCTG+AGG | - | chr3_1:872401-872420 | Msa0342850:intron | 60.0% | |
GGCCTACAGCTGGACCACTC+AGG | - | chr3_1:870996-871015 | Msa0342850:intron | 65.0% | |
GGCCTGAGTGGTCCAGCTGT+AGG | + | chr3_1:871001-871020 | None:intergenic | 65.0% | |
CTCGGCAGCCCTCTTCAGTC+TGG | + | chr3_1:872580-872599 | None:intergenic | 65.0% | |
CAGACTGAAGAGGGCTGCCG+AGG | - | chr3_1:872578-872597 | Msa0342850:intron | 65.0% | |
GAGGGCTGCCGAGGCAGAGA+AGG | - | chr3_1:872587-872606 | Msa0342850:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 870163 | 872940 | 870163 | ID=Msa0342850;Name=Msa0342850 |
chr3_1 | mRNA | 870163 | 872940 | 870163 | ID=Msa0342850-mRNA-1;Parent=Msa0342850;Name=Msa0342850-mRNA-1;_AED=0.07;_eAED=0.07;_QI=77|1|1|1|0.6|0.33|6|295|207 |
chr3_1 | exon | 870163 | 870221 | 870163 | ID=Msa0342850-mRNA-1:exon:194;Parent=Msa0342850-mRNA-1 |
chr3_1 | exon | 870244 | 870701 | 870244 | ID=Msa0342850-mRNA-1:exon:193;Parent=Msa0342850-mRNA-1 |
chr3_1 | exon | 870838 | 870996 | 870838 | ID=Msa0342850-mRNA-1:exon:192;Parent=Msa0342850-mRNA-1 |
chr3_1 | exon | 872007 | 872140 | 872007 | ID=Msa0342850-mRNA-1:exon:191;Parent=Msa0342850-mRNA-1 |
chr3_1 | exon | 872254 | 872374 | 872254 | ID=Msa0342850-mRNA-1:exon:190;Parent=Msa0342850-mRNA-1 |
chr3_1 | exon | 872876 | 872940 | 872876 | ID=Msa0342850-mRNA-1:exon:189;Parent=Msa0342850-mRNA-1 |
chr3_1 | five_prime_UTR | 872876 | 872940 | 872876 | ID=Msa0342850-mRNA-1:five_prime_utr;Parent=Msa0342850-mRNA-1 |
chr3_1 | five_prime_UTR | 872363 | 872374 | 872363 | ID=Msa0342850-mRNA-1:five_prime_utr;Parent=Msa0342850-mRNA-1 |
chr3_1 | CDS | 872254 | 872362 | 872254 | ID=Msa0342850-mRNA-1:cds;Parent=Msa0342850-mRNA-1 |
chr3_1 | CDS | 872007 | 872140 | 872007 | ID=Msa0342850-mRNA-1:cds;Parent=Msa0342850-mRNA-1 |
chr3_1 | CDS | 870838 | 870996 | 870838 | ID=Msa0342850-mRNA-1:cds;Parent=Msa0342850-mRNA-1 |
chr3_1 | CDS | 870480 | 870701 | 870480 | ID=Msa0342850-mRNA-1:cds;Parent=Msa0342850-mRNA-1 |
chr3_1 | three_prime_UTR | 870244 | 870479 | 870244 | ID=Msa0342850-mRNA-1:three_prime_utr;Parent=Msa0342850-mRNA-1 |
chr3_1 | three_prime_UTR | 870163 | 870221 | 870163 | ID=Msa0342850-mRNA-1:three_prime_utr;Parent=Msa0342850-mRNA-1 |
Gene Sequence |
Protein sequence |