AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0342850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0342850 MtrunA17_Chr7g0271401 99.034 207 2 0 1 207 1 207 2.09e-151 418
Msa0342850 MtrunA17_Chr5g0409231 98.551 207 3 0 1 207 1 207 1.03e-150 416
Msa0342850 MtrunA17_Chr1g0155011 97.585 207 5 0 1 207 1 207 2.47e-149 413
Msa0342850 MtrunA17_Chr8g0369561 86.538 52 7 0 133 184 6 57 5.28e-27 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0342850 AT3G49010.3 87.435 191 24 0 2 192 1 191 2.48e-126 355
Msa0342850 AT3G49010.6 87.435 191 24 0 2 192 1 191 2.48e-126 355
Msa0342850 AT3G49010.1 87.435 191 24 0 2 192 1 191 2.48e-126 355
Msa0342850 AT3G49010.2 87.435 191 24 0 2 192 1 191 2.48e-126 355
Msa0342850 AT3G49010.7 87.435 191 24 0 2 192 1 191 2.48e-126 355
Msa0342850 AT3G49010.4 86.387 191 24 1 2 192 1 189 4.17e-123 347
Msa0342850 AT5G23900.1 85.484 186 27 0 2 187 1 186 1.72e-119 338
Msa0342850 AT3G48960.1 77.083 192 44 0 2 193 1 192 4.73e-109 311
Msa0342850 AT3G49010.5 61.257 191 21 1 2 192 1 138 3.91e-78 231

Find 70 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGAAATGAAGGCATTTA+AGG 0.167170 3_1:-870575 Msa0342850:CDS
CGTCTTCTCGTCTTCCTTGC+AGG 0.238053 3_1:+872259 None:intergenic
TGTTGGTTTAACTAGCATTC+TGG 0.306744 3_1:-870309 Msa0342850:three_prime_UTR
AAGAGTAATGTGGCAGAAAA+TGG 0.317572 3_1:+872906 None:intergenic
TTGACCTTGCGTGCACGTCT+TGG 0.342253 3_1:+870839 None:intergenic
GCGAACAAACAAACGCCATT+TGG 0.357834 3_1:-870530 Msa0342850:CDS
CGAACAAACAAACGCCATTT+GGG 0.361720 3_1:-870529 Msa0342850:CDS
AGTGGTCCAGCTGTAGGCCT+TGG 0.374314 3_1:+872089 None:intergenic
TGCTTGCGGAAGTGTTCATT+AGG 0.386045 3_1:+872316 None:intergenic
TGACCTTGCGTGCACGTCTT+GGG 0.387927 3_1:+870840 None:intergenic
TGAGTCTGTCCATGAACAAT+AGG 0.403921 3_1:+872062 None:intergenic
AGAAATACAACATGAAACTA+AGG 0.404501 3_1:-872040 Msa0342850:CDS
CTCGGCAGCCCTCTTCAGTC+TGG 0.408929 3_1:+870504 None:intergenic
AGAAAATGGAGAGTAGGGTT+AGG 0.414856 3_1:+872920 None:intergenic
CCACTCAGGCCTATTGTTCA+TGG 0.419917 3_1:-872071 Msa0342850:CDS
AGACAAGAAGTGAAAACTTA+AGG 0.420622 3_1:-870470 Msa0342850:exon
CTTCTCCCTTGAGGAGTTGA+AGG 0.436371 3_1:-872006 Msa0342850:intron
GTCTTGCAATAACTATCATA+AGG 0.439762 3_1:+870426 None:intergenic
GTAGCATTTGCTAGTTCCTC+AGG 0.441712 3_1:+870664 None:intergenic
GAAAATGGAGAGTAGGGTTA+GGG 0.457489 3_1:+872921 None:intergenic
TCTTCAGTCTGGCACCCAAA+TGG 0.461938 3_1:+870515 None:intergenic
GCTTGCGGAAGTGTTCATTA+GGG 0.463786 3_1:+872317 None:intergenic
TAAGATTACAAATGAAATGA+AGG 0.465235 3_1:-870584 Msa0342850:CDS
GTATGGCTATTCAAGTTTGT+TGG 0.466014 3_1:-870326 Msa0342850:three_prime_UTR
GATGGCTTCTCCCTCACAAT+TGG 0.470493 3_1:+870619 None:intergenic
GAGGGCTGCCGAGGCAGAGA+AGG 0.474906 3_1:-870494 Msa0342850:CDS
CTTGTCTTCCTTCTCTGCCT+CGG 0.482926 3_1:+870486 None:intergenic
GTGGTCCAGCTGTAGGCCTT+GGG 0.485461 3_1:+872090 None:intergenic
GTGGCAGAAAATGGAGAGTA+GGG 0.486654 3_1:+872915 None:intergenic
TCTTGCAATAACTATCATAA+GGG 0.491378 3_1:+870427 None:intergenic
TGTGGCAGAAAATGGAGAGT+AGG 0.497248 3_1:+872914 None:intergenic
CTTGCAGACCTTCCAAGGAT+CGG 0.513686 3_1:+870909 None:intergenic
GCAAATGCTACACAGGTTCA+AGG 0.515568 3_1:-870652 Msa0342850:CDS
TTCTCGTCTTCCTTGCAGGT+TGG 0.518598 3_1:+872263 None:intergenic
TCGACAGAAATACCAATAGT+TGG 0.524260 3_1:+870947 None:intergenic
TGTTTACCTTCAACTCCTCA+AGG 0.536157 3_1:+872000 None:intergenic
GTTGGCTTGCAGACCTTCCA+AGG 0.544997 3_1:+870904 None:intergenic
CTTCCCAAGACGTGCACGCA+AGG 0.546682 3_1:-870843 Msa0342850:CDS
ATGAACACTTCCGCAAGCAT+TGG 0.548841 3_1:-872312 Msa0342850:CDS
ATGAAACTAAGGGCTGGTAA+AGG 0.560135 3_1:-872029 Msa0342850:CDS
GAAATACAACATGAAACTAA+GGG 0.563936 3_1:-872039 Msa0342850:CDS
AGGAAGACGAGAAGACGCTT+AGG 0.564086 3_1:-872253 Msa0342850:intron
TCTTGGGAAGACGACCAACT+TGG 0.564678 3_1:+870856 None:intergenic
AAGACGTGCACGCAAGGTCA+AGG 0.565249 3_1:-870837 Msa0342850:intron
TACAACATGAAACTAAGGGC+TGG 0.568361 3_1:-872035 Msa0342850:CDS
TTCATACTTACCAATTGTGA+GGG 0.574179 3_1:-870629 Msa0342850:CDS
CAGACTGAAGAGGGCTGCCG+AGG 0.574750 3_1:-870503 Msa0342850:CDS
GTCTGCAAGCCAACGTGCAG+AGG 0.583501 3_1:-870895 Msa0342850:CDS
TGGTAAAGGCTTCTCCCTTG+AGG 0.585769 3_1:-872015 Msa0342850:CDS
AGGCCTTGGGAAAATCTTCA+CGG 0.587332 3_1:+872103 None:intergenic
GTTCATACTTACCAATTGTG+AGG 0.591073 3_1:-870630 Msa0342850:CDS
ATTTGGGTGCCAGACTGAAG+AGG 0.592370 3_1:-870513 Msa0342850:CDS
AAATTGCTTAGTTTGAGACA+TGG 0.594953 3_1:-870374 Msa0342850:three_prime_UTR
GGCTGGTGATTCCACTCCTG+AGG 0.595885 3_1:-870680 Msa0342850:CDS
GAAGACATACAAGGCCAAGT+TGG 0.599063 3_1:-870870 Msa0342850:CDS
GGCCTACAGCTGGACCACTC+AGG 0.602263 3_1:-872085 Msa0342850:CDS
ATCTTAACAAGCTCTACAGA+TGG 0.608105 3_1:+870601 None:intergenic
TTTGGGTGCCAGACTGAAGA+GGG 0.608247 3_1:-870512 Msa0342850:CDS
GGCAAAACTATGTCAAGACA+TGG 0.612396 3_1:-872291 Msa0342850:CDS
ATTTGCTAGTTCCTCAGGAG+TGG 0.614969 3_1:+870669 None:intergenic
CCTACTCGTGAAATCGCCGC+AGG 0.621744 3_1:-872875 Msa0342850:intron
TGTCTTCAGCCTCTGCACGT+TGG 0.625495 3_1:+870886 None:intergenic
GTTTACCTTCAACTCCTCAA+GGG 0.627618 3_1:+872001 None:intergenic
GGCCTGAGTGGTCCAGCTGT+AGG 0.635974 3_1:+872083 None:intergenic
GGAACTAGCAAATGCTACAC+AGG 0.641783 3_1:-870659 Msa0342850:CDS
CATGGTTTAACCAACCTGCA+AGG 0.654567 3_1:-872273 Msa0342850:CDS
CCATGAACAATAGGCCTGAG+TGG 0.655173 3_1:+872071 None:intergenic
GGAGCAGCTGAAGAGTAATG+TGG 0.668061 3_1:+872896 None:intergenic
CCTGCGGCGATTTCACGAGT+AGG 0.671313 3_1:+872875 None:intergenic
GCAGAGGCTGAAGACATACA+AGG 0.685449 3_1:-870879 Msa0342850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAGAATATGTAATAAA+TGG - chr3_1:871349-871368 Msa0342850:intron 10.0%
!! TAAATTATAATAATATCATC+AGG + chr3_1:871437-871456 None:intergenic 10.0%
!!! CAGATTTTTTATTTGTTTTT+GGG - chr3_1:870512-870531 Msa0342850:CDS 15.0%
!!! AGATTTTTTATTTGTTTTTG+GGG - chr3_1:870513-870532 Msa0342850:CDS 15.0%
!!! AAATTCTAGATATTTACTTT+TGG - chr3_1:871185-871204 Msa0342850:intron 15.0%
!! AAAAACAAACTCAATTAAAT+TGG + chr3_1:871622-871641 None:intergenic 15.0%
!!! TTAATTGAGTTTGTTTTTTA+AGG - chr3_1:871624-871643 Msa0342850:intron 15.0%
!!! TTTCTTCTATTTTATAATGT+AGG - chr3_1:872085-872104 Msa0342850:CDS 15.0%
!!! AATTGATTATGCTTTTGAAT+TGG - chr3_1:870373-870392 Msa0342850:three_prime_UTR 20.0%
!!! GCAGATTTTTTATTTGTTTT+TGG - chr3_1:870511-870530 Msa0342850:CDS 20.0%
!! CAAAAAACAATATATCAGAA+AGG + chr3_1:870695-870714 None:intergenic 20.0%
!!! CTTTCTGATATATTGTTTTT+TGG - chr3_1:870693-870712 Msa0342850:intron 20.0%
!!! TTTGATTTATTTGTCTTGAT+GGG - chr3_1:870925-870944 Msa0342850:CDS 20.0%
!!! TTTTAGCATTATCAAAAAAG+TGG - chr3_1:871149-871168 Msa0342850:intron 20.0%
!! AAACTAAAAACTCTTAAAAC+CGG + chr3_1:871719-871738 None:intergenic 20.0%
!!! TTTTTACTTTACCTTTTCAA+TGG - chr3_1:872051-872070 Msa0342850:CDS 20.0%
!! TAAGAAATAAACCATTGAAA+AGG + chr3_1:872065-872084 None:intergenic 20.0%
!!! TATGACCTTTTTCTTAATTT+TGG - chr3_1:872298-872317 Msa0342850:CDS 20.0%
!! TAAGATTACAAATGAAATGA+AGG - chr3_1:872497-872516 Msa0342850:intron 20.0%
!!! TTAGCATGTTTTATTTTTCA+TGG - chr3_1:872800-872819 Msa0342850:intron 20.0%
!!! TAGCATGTTTTATTTTTCAT+GGG - chr3_1:872801-872820 Msa0342850:intron 20.0%
!! TCAAAAGCATAATCAATTGT+GGG + chr3_1:870371-870390 None:intergenic 25.0%
!! TTCAAAAGCATAATCAATTG+TGG + chr3_1:870372-870391 None:intergenic 25.0%
! TGAGAAAGAATGTATATATG+CGG - chr3_1:870427-870446 Msa0342850:three_prime_UTR 25.0%
! ATAAAAAATCTGCACTATTG+AGG + chr3_1:870504-870523 None:intergenic 25.0%
!!! GTTTTTTGGTTGATATTTGA+AGG - chr3_1:870707-870726 Msa0342850:intron 25.0%
!! CTTTGATTTATTTGTCTTGA+TGG - chr3_1:870924-870943 Msa0342850:CDS 25.0%
! AGAAATACAACATGAAACTA+AGG - chr3_1:871041-871060 Msa0342850:intron 25.0%
! GAAATACAACATGAAACTAA+GGG - chr3_1:871042-871061 Msa0342850:intron 25.0%
! AAATTGCAAGTCACTAAAAA+CGG - chr3_1:871248-871267 Msa0342850:intron 25.0%
! ATAGGTAAAAATACTCCATA+TGG + chr3_1:871587-871606 None:intergenic 25.0%
!!! TATGGAGTATTTTTACCTAT+AGG - chr3_1:871587-871606 Msa0342850:intron 25.0%
!!! AGTATTTTTACCTATAGGAT+TGG - chr3_1:871592-871611 Msa0342850:intron 25.0%
! AACTAAAAACTCTTAAAACC+GGG + chr3_1:871718-871737 None:intergenic 25.0%
!! ACAACTAAAGTAGATTTTGA+TGG + chr3_1:871755-871774 None:intergenic 25.0%
! AAATCTACTTTAGTTGTTAC+AGG - chr3_1:871758-871777 Msa0342850:intron 25.0%
!! AAGAAATCATGGATTATACA+AGG + chr3_1:871835-871854 None:intergenic 25.0%
!! AATATGATTAGTGTTTTCAG+TGG + chr3_1:871868-871887 None:intergenic 25.0%
! TTCAAATTTATCAGCAATGA+CGG + chr3_1:872326-872345 None:intergenic 25.0%
! GCATTATTCTTAATTTCTTC+TGG - chr3_1:872360-872379 Msa0342850:intron 25.0%
!!! AAATGAAATGAAGGCATTTA+AGG - chr3_1:872506-872525 Msa0342850:intron 25.0%
! TCTTGCAATAACTATCATAA+GGG + chr3_1:872657-872676 None:intergenic 25.0%
GCATATATACATTCTTTCTC+AGG + chr3_1:870428-870447 None:intergenic 30.0%
! ACTATTGAGGTTTTACGAAT+TGG + chr3_1:870491-870510 None:intergenic 30.0%
!!! TTGTTTTTGGGGAAATGATA+TGG - chr3_1:870524-870543 Msa0342850:CDS 30.0%
! TTGGTTGATATTTGAAGGTA+AGG - chr3_1:870712-870731 Msa0342850:intron 30.0%
TTTGAAGGTAAGGTGAAAAA+TGG - chr3_1:870722-870741 Msa0342850:intron 30.0%
TAAAAATACTCCATATGGAC+AGG + chr3_1:871582-871601 None:intergenic 30.0%
!!! AGTTTGTTTTTTAAGGCCTA+TGG - chr3_1:871631-871650 Msa0342850:intron 30.0%
! AAATCATGGATTATACAAGG+AGG + chr3_1:871832-871851 None:intergenic 30.0%
GTGTATAAGCAAAGAAATCA+TGG + chr3_1:871846-871865 None:intergenic 30.0%
TCACAACTGAAGAGAATATT+CGG + chr3_1:871913-871932 None:intergenic 30.0%
GACAGAATTGAATATGAAAC+AGG + chr3_1:871936-871955 None:intergenic 30.0%
! TATTTTATAATGTAGGCTGC+TGG - chr3_1:872092-872111 Msa0342850:CDS 30.0%
CGGTACCAAAATTAAGAAAA+AGG + chr3_1:872306-872325 None:intergenic 30.0%
TTCATACTTACCAATTGTGA+GGG - chr3_1:872452-872471 Msa0342850:intron 30.0%
AGACAAGAAGTGAAAACTTA+AGG - chr3_1:872611-872630 Msa0342850:intron 30.0%
GTCTTGCAATAACTATCATA+AGG + chr3_1:872658-872677 None:intergenic 30.0%
! AAATTGCTTAGTTTGAGACA+TGG - chr3_1:872707-872726 Msa0342850:intron 30.0%
!!! TGCTGTTATTTTGTGAAGTA+TGG - chr3_1:872738-872757 Msa0342850:intron 30.0%
TGCAGACAAAATTCTTTGAA+GGG - chr3_1:872843-872862 Msa0342850:intron 30.0%
AAGAGTAATGTGGCAGAAAA+TGG + chr3_1:870178-870197 None:intergenic 35.0%
AGTTGTGATTGGAATGTGAA+AGG + chr3_1:870253-870272 None:intergenic 35.0%
ACAGTTCTGTGTAGCAAAAA+GGG + chr3_1:870402-870421 None:intergenic 35.0%
AACAGTTCTGTGTAGCAAAA+AGG + chr3_1:870403-870422 None:intergenic 35.0%
ACACATGGATGGATGATTTA+TGG + chr3_1:870462-870481 None:intergenic 35.0%
AAATCATCCATCCATGTGTT+TGG - chr3_1:870463-870482 Msa0342850:exon 35.0%
! TAAGATGAGAAAAGCGGATT+CGG + chr3_1:870601-870620 None:intergenic 35.0%
! GAGATCTAAGATGAGAAAAG+CGG + chr3_1:870607-870626 None:intergenic 35.0%
CAAGCTCTATGTGAAATTAC+AGG - chr3_1:871404-871423 Msa0342850:intron 35.0%
AACCCTGACAATCAAGTTAT+AGG - chr3_1:871681-871700 Msa0342850:intron 35.0%
GACCTATAACTTGATTGTCA+GGG + chr3_1:871686-871705 None:intergenic 35.0%
AGACCTATAACTTGATTGTC+AGG + chr3_1:871687-871706 None:intergenic 35.0%
TACTAGATGCACTCAAACTA+AGG + chr3_1:871994-872013 None:intergenic 35.0%
! ATAGTTGGAGCAAGCTTTTT+GGG + chr3_1:872122-872141 None:intergenic 35.0%
! AATAGTTGGAGCAAGCTTTT+TGG + chr3_1:872123-872142 None:intergenic 35.0%
! AAAAAGCTTGCTCCAACTAT+TGG - chr3_1:872122-872141 Msa0342850:intron 35.0%
TCGACAGAAATACCAATAGT+TGG + chr3_1:872137-872156 None:intergenic 35.0%
CAGCCTGGAAATAAAAAACA+GGG + chr3_1:872386-872405 None:intergenic 35.0%
GTTCATACTTACCAATTGTG+AGG - chr3_1:872451-872470 Msa0342850:intron 35.0%
ATCTTAACAAGCTCTACAGA+TGG + chr3_1:872483-872502 None:intergenic 35.0%
! GTATGGCTATTCAAGTTTGT+TGG - chr3_1:872755-872774 Msa0342850:intron 35.0%
!! TGTTGGTTTAACTAGCATTC+TGG - chr3_1:872772-872791 Msa0342850:intron 35.0%
CTGCAGACAAAATTCTTTGA+AGG - chr3_1:872842-872861 Msa0342850:intron 35.0%
! GACAAAATTCTTTGAAGGGT+TGG - chr3_1:872847-872866 Msa0342850:intron 35.0%
GATTGGAATGTGAAAGGAGA+AGG + chr3_1:870247-870266 None:intergenic 40.0%
CACATTCCAATCACAACTCT+TGG - chr3_1:870255-870274 Msa0342850:three_prime_UTR 40.0%
! AAAGCACCAAGAGTTGTGAT+TGG + chr3_1:870264-870283 None:intergenic 40.0%
!!! ACAACTCTTGGTGCTTTTCT+CGG - chr3_1:870267-870286 Msa0342850:three_prime_UTR 40.0%
AATCGCAAAATGCTAGCTGA+TGG - chr3_1:870317-870336 Msa0342850:three_prime_UTR 40.0%
!! CATAGTTTTGCCAATGCTTG+CGG + chr3_1:870782-870801 None:intergenic 40.0%
GGCAAAACTATGTCAAGACA+TGG - chr3_1:870790-870809 Msa0342850:intron 40.0%
! ATTTTCAGCTCGTCAGAAGA+AGG - chr3_1:870955-870974 Msa0342850:CDS 40.0%
TGAGTCTGTCCATGAACAAT+AGG + chr3_1:871022-871041 None:intergenic 40.0%
TACAACATGAAACTAAGGGC+TGG - chr3_1:871046-871065 Msa0342850:intron 40.0%
! ATGAAACTAAGGGCTGGTAA+AGG - chr3_1:871052-871071 Msa0342850:intron 40.0%
GTTTACCTTCAACTCCTCAA+GGG + chr3_1:871083-871102 None:intergenic 40.0%
TGTTTACCTTCAACTCCTCA+AGG + chr3_1:871084-871103 None:intergenic 40.0%
! TGTATTGGTGTGGATTGCAA+AGG + chr3_1:871497-871516 None:intergenic 40.0%
TTGCAATCCACACCAATACA+TGG - chr3_1:871497-871516 Msa0342850:intron 40.0%
GCAAACGCAATTCCATGTAT+TGG + chr3_1:871512-871531 None:intergenic 40.0%
ACTTGACAACAGGTTTGTAC+TGG + chr3_1:871552-871571 None:intergenic 40.0%
AGTACAAACCTGTTGTCAAG+TGG - chr3_1:871551-871570 Msa0342850:intron 40.0%
AATACTCCATATGGACAGGT+TGG + chr3_1:871578-871597 None:intergenic 40.0%
! AATTGGCTAGCCAATCCTAT+AGG + chr3_1:871605-871624 None:intergenic 40.0%
!!! TGTTTTTTAAGGCCTATGGC+TGG - chr3_1:871635-871654 Msa0342850:intron 40.0%
TGATTGTCAGGGTTCCTAAA+CGG + chr3_1:871675-871694 None:intergenic 40.0%
AAAACTCTTAAAACCGGGCA+GGG + chr3_1:871713-871732 None:intergenic 40.0%
AAAAACTCTTAAAACCGGGC+AGG + chr3_1:871714-871733 None:intergenic 40.0%
!! GTAGATTTTGATGGTCATGC+TGG + chr3_1:871746-871765 None:intergenic 40.0%
GGTCAAGGTAATGCAAATTG+CGG - chr3_1:872259-872278 Msa0342850:CDS 40.0%
!!! TGGCCCTGTTTTTTATTTCC+AGG - chr3_1:872380-872399 Msa0342850:intron 40.0%
CCAGCCTGGAAATAAAAAAC+AGG + chr3_1:872387-872406 None:intergenic 40.0%
!!! CCTGTTTTTTATTTCCAGGC+TGG - chr3_1:872384-872403 Msa0342850:intron 40.0%
CGAACAAACAAACGCCATTT+GGG - chr3_1:872552-872571 Msa0342850:intron 40.0%
GTGGCAGAAAATGGAGAGTA+GGG + chr3_1:870169-870188 None:intergenic 45.0%
TGTGGCAGAAAATGGAGAGT+AGG + chr3_1:870170-870189 None:intergenic 45.0%
AAGGAGAAGGTGAGAGAATG+AGG + chr3_1:870234-870253 None:intergenic 45.0%
!!! CTTGGTGCTTTTCTCGGATT+CGG - chr3_1:870273-870292 Msa0342850:three_prime_UTR 45.0%
! GCTTTTCTCGGATTCGGATT+CGG - chr3_1:870279-870298 Msa0342850:three_prime_UTR 45.0%
TGGCAAAGCTCAACCATTGA+TGG - chr3_1:870337-870356 Msa0342850:three_prime_UTR 45.0%
!! ATTGGTGCCAAACACATGGA+TGG + chr3_1:870473-870492 None:intergenic 45.0%
!! ACGAATTGGTGCCAAACACA+TGG + chr3_1:870477-870496 None:intergenic 45.0%
ATTCATCATAGGGTGACTGC+AGG - chr3_1:870555-870574 Msa0342850:CDS 45.0%
! GAAAAGCGGATTCGGATTCA+CGG + chr3_1:870593-870612 None:intergenic 45.0%
!! GCTTGCGGAAGTGTTCATTA+GGG + chr3_1:870767-870786 None:intergenic 45.0%
!! TGCTTGCGGAAGTGTTCATT+AGG + chr3_1:870768-870787 None:intergenic 45.0%
ATGAACACTTCCGCAAGCAT+TGG - chr3_1:870769-870788 Msa0342850:intron 45.0%
CATGGTTTAACCAACCTGCA+AGG - chr3_1:870808-870827 Msa0342850:intron 45.0%
AGGCCTTGGGAAAATCTTCA+CGG + chr3_1:870981-871000 None:intergenic 45.0%
! CGCAATTCCATGTATTGGTG+TGG + chr3_1:871507-871526 None:intergenic 45.0%
CCTAAACGGCATACGAGTTA+AGG + chr3_1:871661-871680 None:intergenic 45.0%
! CCTTAACTCGTATGCCGTTT+AGG - chr3_1:871658-871677 Msa0342850:intron 45.0%
CACCAATCTCCAATGTACGT+AGG - chr3_1:871802-871821 Msa0342850:intron 45.0%
CACCTACGTACATTGGAGAT+TGG + chr3_1:871807-871826 None:intergenic 45.0%
!! CTTCCAAGGATCGGTTTTTG+CGG + chr3_1:872166-872185 None:intergenic 45.0%
GAAGACATACAAGGCCAAGT+TGG - chr3_1:872211-872230 Msa0342850:intron 45.0%
! ATTTGCTAGTTCCTCAGGAG+TGG + chr3_1:872415-872434 None:intergenic 45.0%
! GTAGCATTTGCTAGTTCCTC+AGG + chr3_1:872420-872439 None:intergenic 45.0%
GGAACTAGCAAATGCTACAC+AGG - chr3_1:872422-872441 Msa0342850:intron 45.0%
GCAAATGCTACACAGGTTCA+AGG - chr3_1:872429-872448 Msa0342850:intron 45.0%
GCGAACAAACAAACGCCATT+TGG - chr3_1:872551-872570 Msa0342850:intron 45.0%
GGAGCAGCTGAAGAGTAATG+TGG + chr3_1:870188-870207 None:intergenic 50.0%
! GTGAGAGAATGAGGTACCTG+CGG + chr3_1:870225-870244 None:intergenic 50.0%
CGGATTCGGATTCGGATTCA+CGG - chr3_1:870287-870306 Msa0342850:three_prime_UTR 50.0%
!! TGGAGCGCTGGATTCATCAT+AGG - chr3_1:870544-870563 Msa0342850:CDS 50.0%
!! GGAGCGCTGGATTCATCATA+GGG - chr3_1:870545-870564 Msa0342850:CDS 50.0%
TTCTCGTCTTCCTTGCAGGT+TGG + chr3_1:870821-870840 None:intergenic 50.0%
AGGAAGACGAGAAGACGCTT+AGG - chr3_1:870828-870847 Msa0342850:intron 50.0%
! AGGCCGTGAAGATTTTCCCA+AGG - chr3_1:870975-870994 Msa0342850:CDS 50.0%
! ATTTTCCCAAGGCCTACAGC+TGG - chr3_1:870986-871005 Msa0342850:intron 50.0%
CCATGAACAATAGGCCTGAG+TGG + chr3_1:871013-871032 None:intergenic 50.0%
CCACTCAGGCCTATTGTTCA+TGG - chr3_1:871010-871029 Msa0342850:intron 50.0%
TGGTAAAGGCTTCTCCCTTG+AGG - chr3_1:871066-871085 Msa0342850:intron 50.0%
CTTCTCCCTTGAGGAGTTGA+AGG - chr3_1:871075-871094 Msa0342850:intron 50.0%
! AGGTTGGTCCACTTGACAAC+AGG + chr3_1:871562-871581 None:intergenic 50.0%
AGTGGACCAACCTGTCCATA+TGG - chr3_1:871569-871588 Msa0342850:intron 50.0%
TACGAGTTAAGGCCAGCCAT+AGG + chr3_1:871650-871669 None:intergenic 50.0%
TTATAGGTCTATGCCCTGCC+CGG - chr3_1:871697-871716 Msa0342850:intron 50.0%
GGAGGTTCACCTACGTACAT+TGG + chr3_1:871814-871833 None:intergenic 50.0%
CGCAAAAACCGATCCTTGGA+AGG - chr3_1:872164-872183 Msa0342850:intron 50.0%
CTTGCAGACCTTCCAAGGAT+CGG + chr3_1:872175-872194 None:intergenic 50.0%
GCAGAGGCTGAAGACATACA+AGG - chr3_1:872202-872221 Msa0342850:intron 50.0%
TCTTGGGAAGACGACCAACT+TGG + chr3_1:872228-872247 None:intergenic 50.0%
GATGGCTTCTCCCTCACAAT+TGG + chr3_1:872465-872484 None:intergenic 50.0%
TCTTCAGTCTGGCACCCAAA+TGG + chr3_1:872569-872588 None:intergenic 50.0%
ATTTGGGTGCCAGACTGAAG+AGG - chr3_1:872568-872587 Msa0342850:intron 50.0%
TTTGGGTGCCAGACTGAAGA+GGG - chr3_1:872569-872588 Msa0342850:intron 50.0%
CTTGTCTTCCTTCTCTGCCT+CGG + chr3_1:872598-872617 None:intergenic 50.0%
GGGGAAATGATATGGAGCGC+TGG - chr3_1:870532-870551 Msa0342850:CDS 55.0%
CGTCTTCTCGTCTTCCTTGC+AGG + chr3_1:870825-870844 None:intergenic 55.0%
TCGCCGCAAAAACCGATCCT+TGG - chr3_1:872160-872179 Msa0342850:intron 55.0%
!! GTTGGCTTGCAGACCTTCCA+AGG + chr3_1:872180-872199 None:intergenic 55.0%
TGTCTTCAGCCTCTGCACGT+TGG + chr3_1:872198-872217 None:intergenic 55.0%
TGACCTTGCGTGCACGTCTT+GGG + chr3_1:872244-872263 None:intergenic 55.0%
TTGACCTTGCGTGCACGTCT+TGG + chr3_1:872245-872264 None:intergenic 55.0%
AAGACGTGCACGCAAGGTCA+AGG - chr3_1:872244-872263 Msa0342850:intron 55.0%
CCTGCGGCGATTTCACGAGT+AGG + chr3_1:870209-870228 None:intergenic 60.0%
CCTACTCGTGAAATCGCCGC+AGG - chr3_1:870206-870225 Msa0342850:intron 60.0%
! GTGGGCACTGCTGCCATCAA+TGG + chr3_1:870353-870372 None:intergenic 60.0%
GTGGTCCAGCTGTAGGCCTT+GGG + chr3_1:870994-871013 None:intergenic 60.0%
AGTGGTCCAGCTGTAGGCCT+TGG + chr3_1:870995-871014 None:intergenic 60.0%
GTCTGCAAGCCAACGTGCAG+AGG - chr3_1:872186-872205 Msa0342850:intron 60.0%
CTTCCCAAGACGTGCACGCA+AGG - chr3_1:872238-872257 Msa0342850:intron 60.0%
CAGGAGTGGAATCACCAGCC+TGG + chr3_1:872401-872420 None:intergenic 60.0%
GGCTGGTGATTCCACTCCTG+AGG - chr3_1:872401-872420 Msa0342850:intron 60.0%
GGCCTACAGCTGGACCACTC+AGG - chr3_1:870996-871015 Msa0342850:intron 65.0%
GGCCTGAGTGGTCCAGCTGT+AGG + chr3_1:871001-871020 None:intergenic 65.0%
CTCGGCAGCCCTCTTCAGTC+TGG + chr3_1:872580-872599 None:intergenic 65.0%
CAGACTGAAGAGGGCTGCCG+AGG - chr3_1:872578-872597 Msa0342850:intron 65.0%
GAGGGCTGCCGAGGCAGAGA+AGG - chr3_1:872587-872606 Msa0342850:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 870163 872940 870163 ID=Msa0342850;Name=Msa0342850
chr3_1 mRNA 870163 872940 870163 ID=Msa0342850-mRNA-1;Parent=Msa0342850;Name=Msa0342850-mRNA-1;_AED=0.07;_eAED=0.07;_QI=77|1|1|1|0.6|0.33|6|295|207
chr3_1 exon 870163 870221 870163 ID=Msa0342850-mRNA-1:exon:194;Parent=Msa0342850-mRNA-1
chr3_1 exon 870244 870701 870244 ID=Msa0342850-mRNA-1:exon:193;Parent=Msa0342850-mRNA-1
chr3_1 exon 870838 870996 870838 ID=Msa0342850-mRNA-1:exon:192;Parent=Msa0342850-mRNA-1
chr3_1 exon 872007 872140 872007 ID=Msa0342850-mRNA-1:exon:191;Parent=Msa0342850-mRNA-1
chr3_1 exon 872254 872374 872254 ID=Msa0342850-mRNA-1:exon:190;Parent=Msa0342850-mRNA-1
chr3_1 exon 872876 872940 872876 ID=Msa0342850-mRNA-1:exon:189;Parent=Msa0342850-mRNA-1
chr3_1 five_prime_UTR 872876 872940 872876 ID=Msa0342850-mRNA-1:five_prime_utr;Parent=Msa0342850-mRNA-1
chr3_1 five_prime_UTR 872363 872374 872363 ID=Msa0342850-mRNA-1:five_prime_utr;Parent=Msa0342850-mRNA-1
chr3_1 CDS 872254 872362 872254 ID=Msa0342850-mRNA-1:cds;Parent=Msa0342850-mRNA-1
chr3_1 CDS 872007 872140 872007 ID=Msa0342850-mRNA-1:cds;Parent=Msa0342850-mRNA-1
chr3_1 CDS 870838 870996 870838 ID=Msa0342850-mRNA-1:cds;Parent=Msa0342850-mRNA-1
chr3_1 CDS 870480 870701 870480 ID=Msa0342850-mRNA-1:cds;Parent=Msa0342850-mRNA-1
chr3_1 three_prime_UTR 870244 870479 870244 ID=Msa0342850-mRNA-1:three_prime_utr;Parent=Msa0342850-mRNA-1
chr3_1 three_prime_UTR 870163 870221 870163 ID=Msa0342850-mRNA-1:three_prime_utr;Parent=Msa0342850-mRNA-1
Gene Sequence

>Msa0342850

ATGGTGAAGCATAACAATGTTATCCCTAATGAACACTTCCGCAAGCATTGGCAAAACTATGTCAAGACATGGTTTAACCAACCTGCAAGGAAGACGAGAAGACGCTTAGCTCGTCAGAAGAAGGCCGTGAAGATTTTCCCAAGGCCTACAGCTGGACCACTCAGGCCTATTGTTCATGGACAGACTCAGAAATACAACATGAAACTAAGGGCTGGTAAAGGCTTCTCCCTTGAGGAGTTGAAGGCTGCTGGTATTCCCAAAAAGCTTGCTCCAACTATTGGTATTTCTGTCGATCATCGCCGCAAAAACCGATCCTTGGAAGGTCTGCAAGCCAACGTGCAGAGGCTGAAGACATACAAGGCCAAGTTGGTCGTCTTCCCAAGACGTGCACGCAAGGTCAAGGCTGGTGATTCCACTCCTGAGGAACTAGCAAATGCTACACAGGTTCAAGGTTCATACTTACCAATTGTGAGGGAGAAGCCATCTGTAGAGCTTGTTAAGATTACAAATGAAATGAAGGCATTTAAGGCTTATTACAAGCTTCGTCTTGAGCGAACAAACAAACGCCATTTGGGTGCCAGACTGAAGAGGGCTGCCGAGGCAGAGAAGGAAGACAAGAAGTGA

Protein sequence

>Msa0342850

MVKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTQKYNMKLRAGKGFSLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIVREKPSVELVKITNEMKAFKAYYKLRLERTNKRHLGARLKRAAEAEKEDKK*