Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1128120 | XP_003626150.1 | 99.034 | 207 | 2 | 0 | 1 | 207 | 1 | 207 | 2.28e-147 | 418 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1128120 | sp|P41129|RL132_BRANA | 85.922 | 206 | 29 | 0 | 2 | 207 | 1 | 206 | 3.23e-131 | 370 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1128120 | G7KWF6 | 99.034 | 207 | 2 | 0 | 1 | 207 | 1 | 207 | 1.09e-147 | 418 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000100 | Msa1128120 | 0.812469 | 4.173103e-51 | -8.615850e-47 |
Msa0002750 | Msa1128120 | 0.825259 | 5.167233e-54 | -8.615850e-47 |
Msa0002790 | Msa1128120 | 0.803846 | 2.868779e-49 | -8.615850e-47 |
Msa0044890 | Msa1128120 | 0.839637 | 1.406699e-57 | -8.615850e-47 |
Msa0068970 | Msa1128120 | 0.839600 | 1.437802e-57 | -8.615850e-47 |
Msa0087910 | Msa1128120 | 0.851710 | 7.431531e-61 | -8.615850e-47 |
Msa0114600 | Msa1128120 | 0.814284 | 1.666011e-51 | -8.615850e-47 |
Msa0608260 | Msa1128120 | 0.835252 | 1.870054e-56 | -8.615850e-47 |
Msa0653060 | Msa1128120 | 0.822223 | 2.657861e-53 | -8.615850e-47 |
Msa0691330 | Msa1128120 | 0.845866 | 3.107761e-59 | -8.615850e-47 |
Msa0789930 | Msa1128120 | 0.817313 | 3.517879e-52 | -8.615850e-47 |
Msa0129130 | Msa1128120 | 0.825671 | 4.127906e-54 | -8.615850e-47 |
Msa0129660 | Msa1128120 | 0.800282 | 1.550666e-48 | -8.615850e-47 |
Msa0183090 | Msa1128120 | 0.810082 | 1.375424e-50 | -8.615850e-47 |
Msa0184650 | Msa1128120 | 0.895136 | 1.275810e-75 | -8.615850e-47 |
Msa0186740 | Msa1128120 | 0.833286 | 5.820252e-56 | -8.615850e-47 |
Msa0194940 | Msa1128120 | 0.832082 | 1.158129e-55 | -8.615850e-47 |
Msa0210330 | Msa1128120 | 0.843045 | 1.783075e-58 | -8.615850e-47 |
Msa0210360 | Msa1128120 | 0.834099 | 3.644749e-56 | -8.615850e-47 |
Msa0222730 | Msa1128120 | 0.864709 | 1.000253e-64 | -8.615850e-47 |
Msa0223950 | Msa1128120 | 0.862637 | 4.400196e-64 | -8.615850e-47 |
Msa0426250 | Msa1128120 | 0.834817 | 2.406526e-56 | -8.615850e-47 |
Msa1012770 | Msa1128120 | 0.818503 | 1.894327e-52 | -8.615850e-47 |
Msa1040160 | Msa1128120 | 0.846170 | 2.569822e-59 | -8.615850e-47 |
Msa1078870 | Msa1128120 | 0.837613 | 4.687219e-57 | -8.615850e-47 |
Msa1078980 | Msa1128120 | 0.841570 | 4.385041e-58 | -8.615850e-47 |
Msa1079910 | Msa1128120 | 0.818250 | 2.161717e-52 | -8.615850e-47 |
Msa1079920 | Msa1128120 | 0.903221 | 4.340406e-79 | -8.615850e-47 |
Msa1081340 | Msa1128120 | 0.804615 | 1.983759e-49 | -8.615850e-47 |
Msa1083370 | Msa1128120 | 0.854356 | 1.299584e-61 | -8.615850e-47 |
Msa0250820 | Msa1128120 | 0.895042 | 1.395594e-75 | -8.615850e-47 |
Msa0250870 | Msa1128120 | 0.877994 | 4.019487e-69 | -8.615850e-47 |
Msa0264010 | Msa1128120 | 0.895630 | 7.984122e-76 | -8.615850e-47 |
Msa0265200 | Msa1128120 | 0.840347 | 9.187080e-58 | -8.615850e-47 |
Msa0289580 | Msa1128120 | 0.819381 | 1.196496e-52 | -8.615850e-47 |
Msa0289610 | Msa1128120 | 0.816832 | 4.512248e-52 | -8.615850e-47 |
Msa0312210 | Msa1128120 | 0.810618 | 1.053951e-50 | -8.615850e-47 |
Msa0327300 | Msa1128120 | 0.821618 | 3.668775e-53 | -8.615850e-47 |
Msa0327330 | Msa1128120 | 0.809109 | 2.225718e-50 | -8.615850e-47 |
Msa0342850 | Msa1128120 | 0.992184 | 8.664865e-192 | -8.615850e-47 |
Msa1124850 | Msa1128120 | 0.880047 | 7.571204e-70 | -8.615850e-47 |
Msa1128120 | Msa1167540 | 0.838147 | 3.417322e-57 | -8.615850e-47 |
Msa1128120 | Msa1167550 | 0.832055 | 1.175693e-55 | -8.615850e-47 |
Msa1128120 | Msa1169180 | 0.847195 | 1.348267e-59 | -8.615850e-47 |
Msa1128120 | Msa1208330 | 0.802668 | 5.029070e-49 | -8.615850e-47 |
Msa1128120 | Msa1215820 | 0.831894 | 1.288862e-55 | -8.615850e-47 |
Msa1128120 | Msa1258390 | 0.810758 | 9.830886e-51 | -8.615850e-47 |
Msa1128120 | Msa1295150 | 0.827953 | 1.176554e-54 | -8.615850e-47 |
Msa1128120 | Msa1295170 | 0.858574 | 7.501876e-63 | -8.615850e-47 |
Msa1128120 | Msa1311400 | 0.811202 | 7.875827e-51 | -8.615850e-47 |
Msa1128120 | Msa1332250 | 0.814530 | 1.470205e-51 | -8.615850e-47 |
Msa1128120 | Msa1341130 | 0.811924 | 5.487627e-51 | -8.615850e-47 |
Msa1128120 | Msa1366180 | 0.809982 | 1.445526e-50 | -8.615850e-47 |
Msa1128120 | Msa1418690 | 0.816922 | 4.306494e-52 | -8.615850e-47 |
Msa1128120 | Msa1418760 | 0.808735 | 2.676135e-50 | -8.615850e-47 |
Msa1128120 | Msa1426120 | 0.840524 | 8.257319e-58 | -8.615850e-47 |
Msa1128120 | Msa1444240 | 0.813066 | 3.088624e-51 | -8.615850e-47 |
Msa0483110 | Msa1128120 | 0.807857 | 4.117655e-50 | -8.615850e-47 |
Msa0486070 | Msa1128120 | 0.849873 | 2.445562e-60 | -8.615850e-47 |
Msa0529900 | Msa1128120 | 0.810443 | 1.149840e-50 | -8.615850e-47 |
Msa0544720 | Msa1128120 | 0.838290 | 3.140716e-57 | -8.615850e-47 |
Msa0554210 | Msa1128120 | 0.814132 | 1.800010e-51 | -8.615850e-47 |
Msa0557720 | Msa1128120 | 0.859780 | 3.264615e-63 | -8.615850e-47 |
Msa0848240 | Msa1128120 | 0.823483 | 1.351703e-53 | -8.615850e-47 |
Msa0930490 | Msa1128120 | 0.822322 | 2.520238e-53 | -8.615850e-47 |
Msa0979060 | Msa1128120 | 0.809463 | 1.868879e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1128120 | MtrunA17_Chr7g0271401 | 99.034 | 207 | 2 | 0 | 1 | 207 | 1 | 207 | 2.09e-151 | 418 |
Msa1128120 | MtrunA17_Chr5g0409231 | 98.551 | 207 | 3 | 0 | 1 | 207 | 1 | 207 | 1.03e-150 | 416 |
Msa1128120 | MtrunA17_Chr1g0155011 | 97.585 | 207 | 5 | 0 | 1 | 207 | 1 | 207 | 2.47e-149 | 413 |
Msa1128120 | MtrunA17_Chr8g0369561 | 86.538 | 52 | 7 | 0 | 133 | 184 | 6 | 57 | 5.28e-27 | 97.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1128120 | AT3G49010.3 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.48e-126 | 355 |
Msa1128120 | AT3G49010.6 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.48e-126 | 355 |
Msa1128120 | AT3G49010.1 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.48e-126 | 355 |
Msa1128120 | AT3G49010.2 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.48e-126 | 355 |
Msa1128120 | AT3G49010.7 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.48e-126 | 355 |
Msa1128120 | AT3G49010.4 | 86.387 | 191 | 24 | 1 | 2 | 192 | 1 | 189 | 4.17e-123 | 347 |
Msa1128120 | AT5G23900.1 | 85.484 | 186 | 27 | 0 | 2 | 187 | 1 | 186 | 1.72e-119 | 338 |
Msa1128120 | AT3G48960.1 | 77.083 | 192 | 44 | 0 | 2 | 193 | 1 | 192 | 4.73e-109 | 311 |
Msa1128120 | AT3G49010.5 | 61.257 | 191 | 21 | 1 | 2 | 192 | 1 | 138 | 3.91e-78 | 231 |
Find 70 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATGAAATGAAGGCATTTA+AGG | 0.167170 | 7_3:+79917537 | Msa1128120:CDS |
CGTCTTCTCGTCTTCCTTGC+AGG | 0.238053 | 7_3:-79915853 | None:intergenic |
TGTTGGTTTAACTAGCATTC+TGG | 0.306744 | 7_3:+79917803 | Msa1128120:three_prime_UTR |
AAGAGTAATGTGGCAGAAAA+TGG | 0.317572 | 7_3:-79915206 | None:intergenic |
TTGACCTTGCGTGCACGTCT+TGG | 0.342253 | 7_3:-79917273 | None:intergenic |
GCGAACAAACAAACGCCATT+TGG | 0.357834 | 7_3:+79917582 | Msa1128120:CDS |
CGAACAAACAAACGCCATTT+GGG | 0.361720 | 7_3:+79917583 | Msa1128120:CDS |
AGTGGTCCAGCTGTAGGCCT+TGG | 0.374314 | 7_3:-79916023 | None:intergenic |
TGCTTGCGGAAGTGTTCATT+AGG | 0.386045 | 7_3:-79915796 | None:intergenic |
TGACCTTGCGTGCACGTCTT+GGG | 0.387927 | 7_3:-79917272 | None:intergenic |
TGAGTCTGTCCATGAACAAT+AGG | 0.403921 | 7_3:-79916050 | None:intergenic |
AGAAATACAACATGAAACTA+AGG | 0.404501 | 7_3:+79916072 | Msa1128120:CDS |
CTCGGCAGCCCTCTTCAGTC+TGG | 0.408929 | 7_3:-79917608 | None:intergenic |
AGAAAATGGAGAGTAGGGTT+AGG | 0.414856 | 7_3:-79915192 | None:intergenic |
CCACTCAGGCCTATTGTTCA+TGG | 0.419917 | 7_3:+79916041 | Msa1128120:CDS |
AGACAAGAAGTGAAAACTTA+AGG | 0.420622 | 7_3:+79917642 | Msa1128120:exon |
CTTCTCCCTTGAGGAGTTGA+AGG | 0.436371 | 7_3:+79916106 | Msa1128120:CDS |
GTCTTGCAATAACTATCATA+AGG | 0.439762 | 7_3:-79917686 | None:intergenic |
GTAGCATTTGCTAGTTCCTC+AGG | 0.441712 | 7_3:-79917448 | None:intergenic |
GAAAATGGAGAGTAGGGTTA+GGG | 0.457489 | 7_3:-79915191 | None:intergenic |
TCTTCAGTCTGGCACCCAAA+TGG | 0.461938 | 7_3:-79917597 | None:intergenic |
GCTTGCGGAAGTGTTCATTA+GGG | 0.463786 | 7_3:-79915795 | None:intergenic |
TAAGATTACAAATGAAATGA+AGG | 0.465235 | 7_3:+79917528 | Msa1128120:CDS |
GTATGGCTATTCAAGTTTGT+TGG | 0.466014 | 7_3:+79917786 | Msa1128120:three_prime_UTR |
GATGGCTTCTCCCTCACAAT+TGG | 0.470493 | 7_3:-79917493 | None:intergenic |
GAGGGCTGCCGAGGCAGAGA+AGG | 0.474906 | 7_3:+79917618 | Msa1128120:CDS |
CTTGTCTTCCTTCTCTGCCT+CGG | 0.482926 | 7_3:-79917626 | None:intergenic |
GTGGTCCAGCTGTAGGCCTT+GGG | 0.485461 | 7_3:-79916022 | None:intergenic |
GTGGCAGAAAATGGAGAGTA+GGG | 0.486654 | 7_3:-79915197 | None:intergenic |
TCTTGCAATAACTATCATAA+GGG | 0.491378 | 7_3:-79917685 | None:intergenic |
TGTGGCAGAAAATGGAGAGT+AGG | 0.497248 | 7_3:-79915198 | None:intergenic |
CTTGCAGACCTTCCAAGGAT+CGG | 0.513686 | 7_3:-79917203 | None:intergenic |
GCAAATGCTACACAGGTTCA+AGG | 0.515568 | 7_3:+79917460 | Msa1128120:CDS |
TTCTCGTCTTCCTTGCAGGT+TGG | 0.518598 | 7_3:-79915849 | None:intergenic |
TCGACAGAAATACCAATAGT+TGG | 0.524260 | 7_3:-79917165 | None:intergenic |
TGTTTACCTTCAACTCCTCA+AGG | 0.536157 | 7_3:-79916112 | None:intergenic |
GTTGGCTTGCAGACCTTCCA+AGG | 0.544997 | 7_3:-79917208 | None:intergenic |
CTTCCCAAGACGTGCACGCA+AGG | 0.546682 | 7_3:+79917269 | Msa1128120:CDS |
ATGAACACTTCCGCAAGCAT+TGG | 0.548841 | 7_3:+79915800 | Msa1128120:CDS |
ATGAAACTAAGGGCTGGTAA+AGG | 0.560135 | 7_3:+79916083 | Msa1128120:CDS |
GAAATACAACATGAAACTAA+GGG | 0.563936 | 7_3:+79916073 | Msa1128120:CDS |
AGGAAGACGAGAAGACGCTT+AGG | 0.564086 | 7_3:+79915859 | Msa1128120:CDS |
TCTTGGGAAGACGACCAACT+TGG | 0.564678 | 7_3:-79917256 | None:intergenic |
AAGACGTGCACGCAAGGTCA+AGG | 0.565249 | 7_3:+79917275 | Msa1128120:CDS |
TACAACATGAAACTAAGGGC+TGG | 0.568361 | 7_3:+79916077 | Msa1128120:CDS |
TTCATACTTACCAATTGTGA+GGG | 0.574179 | 7_3:+79917483 | Msa1128120:CDS |
CAGACTGAAGAGGGCTGCCG+AGG | 0.574750 | 7_3:+79917609 | Msa1128120:CDS |
GTCTGCAAGCCAACGTGCAG+AGG | 0.583501 | 7_3:+79917217 | Msa1128120:CDS |
TGGTAAAGGCTTCTCCCTTG+AGG | 0.585769 | 7_3:+79916097 | Msa1128120:CDS |
AGGCCTTGGGAAAATCTTCA+CGG | 0.587332 | 7_3:-79916009 | None:intergenic |
GTTCATACTTACCAATTGTG+AGG | 0.591073 | 7_3:+79917482 | Msa1128120:CDS |
ATTTGGGTGCCAGACTGAAG+AGG | 0.592370 | 7_3:+79917599 | Msa1128120:CDS |
AAATTGCTTAGTTTGAGACA+TGG | 0.594953 | 7_3:+79917738 | Msa1128120:three_prime_UTR |
GGCTGGTGATTCCACTCCTG+AGG | 0.595885 | 7_3:+79917432 | Msa1128120:intron |
GAAGACATACAAGGCCAAGT+TGG | 0.599063 | 7_3:+79917242 | Msa1128120:CDS |
GGCCTACAGCTGGACCACTC+AGG | 0.602263 | 7_3:+79916027 | Msa1128120:CDS |
ATCTTAACAAGCTCTACAGA+TGG | 0.608105 | 7_3:-79917511 | None:intergenic |
TTTGGGTGCCAGACTGAAGA+GGG | 0.608247 | 7_3:+79917600 | Msa1128120:CDS |
GGCAAAACTATGTCAAGACA+TGG | 0.612396 | 7_3:+79915821 | Msa1128120:CDS |
ATTTGCTAGTTCCTCAGGAG+TGG | 0.614969 | 7_3:-79917443 | None:intergenic |
CCTACTCGTGAAATCGCCGC+AGG | 0.621744 | 7_3:+79915237 | Msa1128120:five_prime_UTR |
TGTCTTCAGCCTCTGCACGT+TGG | 0.625495 | 7_3:-79917226 | None:intergenic |
GTTTACCTTCAACTCCTCAA+GGG | 0.627618 | 7_3:-79916111 | None:intergenic |
GGCCTGAGTGGTCCAGCTGT+AGG | 0.635974 | 7_3:-79916029 | None:intergenic |
GGAACTAGCAAATGCTACAC+AGG | 0.641783 | 7_3:+79917453 | Msa1128120:CDS |
CATGGTTTAACCAACCTGCA+AGG | 0.654567 | 7_3:+79915839 | Msa1128120:CDS |
CCATGAACAATAGGCCTGAG+TGG | 0.655173 | 7_3:-79916041 | None:intergenic |
GGAGCAGCTGAAGAGTAATG+TGG | 0.668061 | 7_3:-79915216 | None:intergenic |
CCTGCGGCGATTTCACGAGT+AGG | 0.671313 | 7_3:-79915237 | None:intergenic |
GCAGAGGCTGAAGACATACA+AGG | 0.685449 | 7_3:+79917233 | Msa1128120:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAAGAATATGTAATAAA+TGG | + | chr7_3:79916380-79916399 | Msa1128120:intron | 10.0% |
!! | TAAATTATAATAATATCATC+AGG | - | chr7_3:79916468-79916487 | None:intergenic | 10.0% |
!!! | CAGATTTTTTATTTGTTTTT+GGG | + | chr7_3:79915543-79915562 | Msa1128120:intron | 15.0% |
!!! | AGATTTTTTATTTGTTTTTG+GGG | + | chr7_3:79915544-79915563 | Msa1128120:intron | 15.0% |
!!! | AAATTCTAGATATTTACTTT+TGG | + | chr7_3:79916216-79916235 | Msa1128120:intron | 15.0% |
!! | AAAAACAAACTCAATTAAAT+TGG | - | chr7_3:79916653-79916672 | None:intergenic | 15.0% |
!!! | TTAATTGAGTTTGTTTTTTA+AGG | + | chr7_3:79916655-79916674 | Msa1128120:intron | 15.0% |
!!! | TTTCTTCTATTTTATAATGT+AGG | + | chr7_3:79917116-79917135 | Msa1128120:intron | 15.0% |
!!! | AATTGATTATGCTTTTGAAT+TGG | + | chr7_3:79915404-79915423 | Msa1128120:intron | 20.0% |
!!! | GCAGATTTTTTATTTGTTTT+TGG | + | chr7_3:79915542-79915561 | Msa1128120:intron | 20.0% |
!! | CAAAAAACAATATATCAGAA+AGG | - | chr7_3:79915726-79915745 | None:intergenic | 20.0% |
!!! | CTTTCTGATATATTGTTTTT+TGG | + | chr7_3:79915724-79915743 | Msa1128120:intron | 20.0% |
!!! | TTTGATTTATTTGTCTTGAT+GGG | + | chr7_3:79915956-79915975 | Msa1128120:intron | 20.0% |
!!! | TTTTAGCATTATCAAAAAAG+TGG | + | chr7_3:79916180-79916199 | Msa1128120:intron | 20.0% |
!! | AAACTAAAAACTCTTAAAAC+CGG | - | chr7_3:79916750-79916769 | None:intergenic | 20.0% |
!!! | TTTTTACTTTACCTTTTCAA+TGG | + | chr7_3:79917082-79917101 | Msa1128120:intron | 20.0% |
!! | TAAGAAATAAACCATTGAAA+AGG | - | chr7_3:79917096-79917115 | None:intergenic | 20.0% |
!!! | TATGACCTTTTTCTTAATTT+TGG | + | chr7_3:79917329-79917348 | Msa1128120:intron | 20.0% |
!! | TAAGATTACAAATGAAATGA+AGG | + | chr7_3:79917528-79917547 | Msa1128120:CDS | 20.0% |
!!! | TTAGCATGTTTTATTTTTCA+TGG | + | chr7_3:79917831-79917850 | Msa1128120:three_prime_UTR | 20.0% |
!!! | TAGCATGTTTTATTTTTCAT+GGG | + | chr7_3:79917832-79917851 | Msa1128120:three_prime_UTR | 20.0% |
!! | TCAAAAGCATAATCAATTGT+GGG | - | chr7_3:79915402-79915421 | None:intergenic | 25.0% |
!! | TTCAAAAGCATAATCAATTG+TGG | - | chr7_3:79915403-79915422 | None:intergenic | 25.0% |
! | TGAGAAAGAATGTATATATG+CGG | + | chr7_3:79915458-79915477 | Msa1128120:intron | 25.0% |
! | ATAAAAAATCTGCACTATTG+AGG | - | chr7_3:79915535-79915554 | None:intergenic | 25.0% |
!!! | GTTTTTTGGTTGATATTTGA+AGG | + | chr7_3:79915738-79915757 | Msa1128120:intron | 25.0% |
!! | CTTTGATTTATTTGTCTTGA+TGG | + | chr7_3:79915955-79915974 | Msa1128120:intron | 25.0% |
! | AGAAATACAACATGAAACTA+AGG | + | chr7_3:79916072-79916091 | Msa1128120:CDS | 25.0% |
! | GAAATACAACATGAAACTAA+GGG | + | chr7_3:79916073-79916092 | Msa1128120:CDS | 25.0% |
! | AAATTGCAAGTCACTAAAAA+CGG | + | chr7_3:79916279-79916298 | Msa1128120:intron | 25.0% |
! | ATAGGTAAAAATACTCCATA+TGG | - | chr7_3:79916618-79916637 | None:intergenic | 25.0% |
!!! | TATGGAGTATTTTTACCTAT+AGG | + | chr7_3:79916618-79916637 | Msa1128120:intron | 25.0% |
!!! | AGTATTTTTACCTATAGGAT+TGG | + | chr7_3:79916623-79916642 | Msa1128120:intron | 25.0% |
! | AACTAAAAACTCTTAAAACC+GGG | - | chr7_3:79916749-79916768 | None:intergenic | 25.0% |
!! | ACAACTAAAGTAGATTTTGA+TGG | - | chr7_3:79916786-79916805 | None:intergenic | 25.0% |
! | AAATCTACTTTAGTTGTTAC+AGG | + | chr7_3:79916789-79916808 | Msa1128120:intron | 25.0% |
!! | AAGAAATCATGGATTATACA+AGG | - | chr7_3:79916866-79916885 | None:intergenic | 25.0% |
!! | AATATGATTAGTGTTTTCAG+TGG | - | chr7_3:79916899-79916918 | None:intergenic | 25.0% |
! | TTCAAATTTATCAGCAATGA+CGG | - | chr7_3:79917357-79917376 | None:intergenic | 25.0% |
! | GCATTATTCTTAATTTCTTC+TGG | + | chr7_3:79917391-79917410 | Msa1128120:intron | 25.0% |
!!! | AAATGAAATGAAGGCATTTA+AGG | + | chr7_3:79917537-79917556 | Msa1128120:CDS | 25.0% |
! | TCTTGCAATAACTATCATAA+GGG | - | chr7_3:79917688-79917707 | None:intergenic | 25.0% |
GCATATATACATTCTTTCTC+AGG | - | chr7_3:79915459-79915478 | None:intergenic | 30.0% | |
! | ACTATTGAGGTTTTACGAAT+TGG | - | chr7_3:79915522-79915541 | None:intergenic | 30.0% |
!!! | TTGTTTTTGGGGAAATGATA+TGG | + | chr7_3:79915555-79915574 | Msa1128120:intron | 30.0% |
! | TTGGTTGATATTTGAAGGTA+AGG | + | chr7_3:79915743-79915762 | Msa1128120:intron | 30.0% |
TTTGAAGGTAAGGTGAAAAA+TGG | + | chr7_3:79915753-79915772 | Msa1128120:intron | 30.0% | |
TAAAAATACTCCATATGGAC+AGG | - | chr7_3:79916613-79916632 | None:intergenic | 30.0% | |
!!! | AGTTTGTTTTTTAAGGCCTA+TGG | + | chr7_3:79916662-79916681 | Msa1128120:intron | 30.0% |
! | AAATCATGGATTATACAAGG+AGG | - | chr7_3:79916863-79916882 | None:intergenic | 30.0% |
GTGTATAAGCAAAGAAATCA+TGG | - | chr7_3:79916877-79916896 | None:intergenic | 30.0% | |
TCACAACTGAAGAGAATATT+CGG | - | chr7_3:79916944-79916963 | None:intergenic | 30.0% | |
GACAGAATTGAATATGAAAC+AGG | - | chr7_3:79916967-79916986 | None:intergenic | 30.0% | |
! | TATTTTATAATGTAGGCTGC+TGG | + | chr7_3:79917123-79917142 | Msa1128120:intron | 30.0% |
CGGTACCAAAATTAAGAAAA+AGG | - | chr7_3:79917337-79917356 | None:intergenic | 30.0% | |
CAGCCTGAAAATAAAAAACA+GGG | - | chr7_3:79917417-79917436 | None:intergenic | 30.0% | |
TTCATACTTACCAATTGTGA+GGG | + | chr7_3:79917483-79917502 | Msa1128120:CDS | 30.0% | |
AGACAAGAAGTGAAAACTTA+AGG | + | chr7_3:79917642-79917661 | Msa1128120:exon | 30.0% | |
GTCTTGCAATAACTATCATA+AGG | - | chr7_3:79917689-79917708 | None:intergenic | 30.0% | |
! | AAATTGCTTAGTTTGAGACA+TGG | + | chr7_3:79917738-79917757 | Msa1128120:three_prime_UTR | 30.0% |
!!! | TGCTGTTATTTTGTGAAGTA+TGG | + | chr7_3:79917769-79917788 | Msa1128120:three_prime_UTR | 30.0% |
TGCAGACAAAATTCTTTGAA+GGG | + | chr7_3:79917874-79917893 | Msa1128120:intron | 30.0% | |
AAGAGTAATGTGGCAGAAAA+TGG | - | chr7_3:79915209-79915228 | None:intergenic | 35.0% | |
AGTTGTGATTGGAATGTGAA+AGG | - | chr7_3:79915284-79915303 | None:intergenic | 35.0% | |
ACAGTTCTGTGTAGCAAAAA+GGG | - | chr7_3:79915433-79915452 | None:intergenic | 35.0% | |
AACAGTTCTGTGTAGCAAAA+AGG | - | chr7_3:79915434-79915453 | None:intergenic | 35.0% | |
ACACATGGATGGATGATTTA+TGG | - | chr7_3:79915493-79915512 | None:intergenic | 35.0% | |
AAATCATCCATCCATGTGTT+TGG | + | chr7_3:79915494-79915513 | Msa1128120:intron | 35.0% | |
! | TAAGATGAGAAAAGCGGATT+CGG | - | chr7_3:79915632-79915651 | None:intergenic | 35.0% |
! | GAGATCTAAGATGAGAAAAG+CGG | - | chr7_3:79915638-79915657 | None:intergenic | 35.0% |
CAAGCTCTATGTGAAATTAC+AGG | + | chr7_3:79916435-79916454 | Msa1128120:intron | 35.0% | |
AACCCTGACAATCAAGTTAT+AGG | + | chr7_3:79916712-79916731 | Msa1128120:intron | 35.0% | |
GACCTATAACTTGATTGTCA+GGG | - | chr7_3:79916717-79916736 | None:intergenic | 35.0% | |
AGACCTATAACTTGATTGTC+AGG | - | chr7_3:79916718-79916737 | None:intergenic | 35.0% | |
TACTAGATGCACTCAAACTA+AGG | - | chr7_3:79917025-79917044 | None:intergenic | 35.0% | |
! | ATAGTTGGAGCAAGCTTTTT+GGG | - | chr7_3:79917153-79917172 | None:intergenic | 35.0% |
! | AATAGTTGGAGCAAGCTTTT+TGG | - | chr7_3:79917154-79917173 | None:intergenic | 35.0% |
! | AAAAAGCTTGCTCCAACTAT+TGG | + | chr7_3:79917153-79917172 | Msa1128120:CDS | 35.0% |
TCGACAGAAATACCAATAGT+TGG | - | chr7_3:79917168-79917187 | None:intergenic | 35.0% | |
!!! | TGGCCCTGTTTTTTATTTTC+AGG | + | chr7_3:79917411-79917430 | Msa1128120:intron | 35.0% |
CCAGCCTGAAAATAAAAAAC+AGG | - | chr7_3:79917418-79917437 | None:intergenic | 35.0% | |
!!! | CCTGTTTTTTATTTTCAGGC+TGG | + | chr7_3:79917415-79917434 | Msa1128120:intron | 35.0% |
GTTCATACTTACCAATTGTG+AGG | + | chr7_3:79917482-79917501 | Msa1128120:CDS | 35.0% | |
ATCTTAACAAGCTCTACAGA+TGG | - | chr7_3:79917514-79917533 | None:intergenic | 35.0% | |
! | GTATGGCTATTCAAGTTTGT+TGG | + | chr7_3:79917786-79917805 | Msa1128120:three_prime_UTR | 35.0% |
!! | TGTTGGTTTAACTAGCATTC+TGG | + | chr7_3:79917803-79917822 | Msa1128120:three_prime_UTR | 35.0% |
CTGCAGACAAAATTCTTTGA+AGG | + | chr7_3:79917873-79917892 | Msa1128120:intron | 35.0% | |
! | GACAAAATTCTTTGAAGGGT+TGG | + | chr7_3:79917878-79917897 | Msa1128120:intron | 35.0% |
GATTGGAATGTGAAAGGAGA+AGG | - | chr7_3:79915278-79915297 | None:intergenic | 40.0% | |
CACATTCCAATCACAACTCT+TGG | + | chr7_3:79915286-79915305 | Msa1128120:intron | 40.0% | |
! | AAAGCACCAAGAGTTGTGAT+TGG | - | chr7_3:79915295-79915314 | None:intergenic | 40.0% |
!!! | ACAACTCTTGGTGCTTTTCT+CGG | + | chr7_3:79915298-79915317 | Msa1128120:intron | 40.0% |
AATCGCAAAATGCTAGCTGA+TGG | + | chr7_3:79915348-79915367 | Msa1128120:intron | 40.0% | |
!! | CATAGTTTTGCCAATGCTTG+CGG | - | chr7_3:79915813-79915832 | None:intergenic | 40.0% |
GGCAAAACTATGTCAAGACA+TGG | + | chr7_3:79915821-79915840 | Msa1128120:CDS | 40.0% | |
! | ATTTTCAGCTCGTCAGAAGA+AGG | + | chr7_3:79915986-79916005 | Msa1128120:intron | 40.0% |
TGAGTCTGTCCATGAACAAT+AGG | - | chr7_3:79916053-79916072 | None:intergenic | 40.0% | |
TACAACATGAAACTAAGGGC+TGG | + | chr7_3:79916077-79916096 | Msa1128120:CDS | 40.0% | |
! | ATGAAACTAAGGGCTGGTAA+AGG | + | chr7_3:79916083-79916102 | Msa1128120:CDS | 40.0% |
GTTTACCTTCAACTCCTCAA+GGG | - | chr7_3:79916114-79916133 | None:intergenic | 40.0% | |
TGTTTACCTTCAACTCCTCA+AGG | - | chr7_3:79916115-79916134 | None:intergenic | 40.0% | |
! | TGTATTGGTGTGGATTGCAA+AGG | - | chr7_3:79916528-79916547 | None:intergenic | 40.0% |
TTGCAATCCACACCAATACA+TGG | + | chr7_3:79916528-79916547 | Msa1128120:intron | 40.0% | |
GCAAACGCAATTCCATGTAT+TGG | - | chr7_3:79916543-79916562 | None:intergenic | 40.0% | |
ACTTGACAACAGGTTTGTAC+TGG | - | chr7_3:79916583-79916602 | None:intergenic | 40.0% | |
AGTACAAACCTGTTGTCAAG+TGG | + | chr7_3:79916582-79916601 | Msa1128120:intron | 40.0% | |
AATACTCCATATGGACAGGT+TGG | - | chr7_3:79916609-79916628 | None:intergenic | 40.0% | |
! | AATTGGCTAGCCAATCCTAT+AGG | - | chr7_3:79916636-79916655 | None:intergenic | 40.0% |
!!! | TGTTTTTTAAGGCCTATGGC+TGG | + | chr7_3:79916666-79916685 | Msa1128120:intron | 40.0% |
TGATTGTCAGGGTTCCTAAA+CGG | - | chr7_3:79916706-79916725 | None:intergenic | 40.0% | |
AAAACTCTTAAAACCGGGCA+GGG | - | chr7_3:79916744-79916763 | None:intergenic | 40.0% | |
AAAAACTCTTAAAACCGGGC+AGG | - | chr7_3:79916745-79916764 | None:intergenic | 40.0% | |
!! | GTAGATTTTGATGGTCATGC+TGG | - | chr7_3:79916777-79916796 | None:intergenic | 40.0% |
GGTCAAGGTAATGCAAATTG+CGG | + | chr7_3:79917290-79917309 | Msa1128120:intron | 40.0% | |
CGAACAAACAAACGCCATTT+GGG | + | chr7_3:79917583-79917602 | Msa1128120:CDS | 40.0% | |
GTGGCAGAAAATGGAGAGTA+GGG | - | chr7_3:79915200-79915219 | None:intergenic | 45.0% | |
TGTGGCAGAAAATGGAGAGT+AGG | - | chr7_3:79915201-79915220 | None:intergenic | 45.0% | |
AAGGAGAAGGTGAGAGAATG+AGG | - | chr7_3:79915265-79915284 | None:intergenic | 45.0% | |
!!! | CTTGGTGCTTTTCTCGGATT+CGG | + | chr7_3:79915304-79915323 | Msa1128120:intron | 45.0% |
! | GCTTTTCTCGGATTCGGATT+CGG | + | chr7_3:79915310-79915329 | Msa1128120:intron | 45.0% |
TGGCAAAGCTCAACCATTGA+TGG | + | chr7_3:79915368-79915387 | Msa1128120:intron | 45.0% | |
!! | ATTGGTGCCAAACACATGGA+TGG | - | chr7_3:79915504-79915523 | None:intergenic | 45.0% |
!! | ACGAATTGGTGCCAAACACA+TGG | - | chr7_3:79915508-79915527 | None:intergenic | 45.0% |
ATTCATCATAGGGTGACTGC+AGG | + | chr7_3:79915586-79915605 | Msa1128120:intron | 45.0% | |
! | GAAAAGCGGATTCGGATTCA+CGG | - | chr7_3:79915624-79915643 | None:intergenic | 45.0% |
!! | GCTTGCGGAAGTGTTCATTA+GGG | - | chr7_3:79915798-79915817 | None:intergenic | 45.0% |
!! | TGCTTGCGGAAGTGTTCATT+AGG | - | chr7_3:79915799-79915818 | None:intergenic | 45.0% |
ATGAACACTTCCGCAAGCAT+TGG | + | chr7_3:79915800-79915819 | Msa1128120:CDS | 45.0% | |
CATGGTTTAACCAACCTGCA+AGG | + | chr7_3:79915839-79915858 | Msa1128120:CDS | 45.0% | |
AGGCCTTGGGAAAATCTTCA+CGG | - | chr7_3:79916012-79916031 | None:intergenic | 45.0% | |
! | CGCAATTCCATGTATTGGTG+TGG | - | chr7_3:79916538-79916557 | None:intergenic | 45.0% |
CCTAAACGGCATACGAGTTA+AGG | - | chr7_3:79916692-79916711 | None:intergenic | 45.0% | |
! | CCTTAACTCGTATGCCGTTT+AGG | + | chr7_3:79916689-79916708 | Msa1128120:intron | 45.0% |
CACCAATCTCCAATGTACGT+AGG | + | chr7_3:79916833-79916852 | Msa1128120:intron | 45.0% | |
CACCTACGTACATTGGAGAT+TGG | - | chr7_3:79916838-79916857 | None:intergenic | 45.0% | |
!! | CTTCCAAGGATCGGTTTTTG+CGG | - | chr7_3:79917197-79917216 | None:intergenic | 45.0% |
GAAGACATACAAGGCCAAGT+TGG | + | chr7_3:79917242-79917261 | Msa1128120:CDS | 45.0% | |
! | ATTTGCTAGTTCCTCAGGAG+TGG | - | chr7_3:79917446-79917465 | None:intergenic | 45.0% |
! | GTAGCATTTGCTAGTTCCTC+AGG | - | chr7_3:79917451-79917470 | None:intergenic | 45.0% |
GGAACTAGCAAATGCTACAC+AGG | + | chr7_3:79917453-79917472 | Msa1128120:CDS | 45.0% | |
GCAAATGCTACACAGGTTCA+AGG | + | chr7_3:79917460-79917479 | Msa1128120:CDS | 45.0% | |
GCGAACAAACAAACGCCATT+TGG | + | chr7_3:79917582-79917601 | Msa1128120:CDS | 45.0% | |
GGAGCAGCTGAAGAGTAATG+TGG | - | chr7_3:79915219-79915238 | None:intergenic | 50.0% | |
! | GTGAGAGAATGAGGTACCTG+CGG | - | chr7_3:79915256-79915275 | None:intergenic | 50.0% |
CGGATTCGGATTCGGATTCA+CGG | + | chr7_3:79915318-79915337 | Msa1128120:intron | 50.0% | |
!! | TGGAGCGCTGGATTCATCAT+AGG | + | chr7_3:79915575-79915594 | Msa1128120:intron | 50.0% |
!! | GGAGCGCTGGATTCATCATA+GGG | + | chr7_3:79915576-79915595 | Msa1128120:intron | 50.0% |
TTCTCGTCTTCCTTGCAGGT+TGG | - | chr7_3:79915852-79915871 | None:intergenic | 50.0% | |
AGGAAGACGAGAAGACGCTT+AGG | + | chr7_3:79915859-79915878 | Msa1128120:CDS | 50.0% | |
! | AGGCCGTGAAGATTTTCCCA+AGG | + | chr7_3:79916006-79916025 | Msa1128120:CDS | 50.0% |
! | ATTTTCCCAAGGCCTACAGC+TGG | + | chr7_3:79916017-79916036 | Msa1128120:CDS | 50.0% |
CCATGAACAATAGGCCTGAG+TGG | - | chr7_3:79916044-79916063 | None:intergenic | 50.0% | |
CCACTCAGGCCTATTGTTCA+TGG | + | chr7_3:79916041-79916060 | Msa1128120:CDS | 50.0% | |
TGGTAAAGGCTTCTCCCTTG+AGG | + | chr7_3:79916097-79916116 | Msa1128120:CDS | 50.0% | |
CTTCTCCCTTGAGGAGTTGA+AGG | + | chr7_3:79916106-79916125 | Msa1128120:CDS | 50.0% | |
! | AGGTTGGTCCACTTGACAAC+AGG | - | chr7_3:79916593-79916612 | None:intergenic | 50.0% |
AGTGGACCAACCTGTCCATA+TGG | + | chr7_3:79916600-79916619 | Msa1128120:intron | 50.0% | |
TACGAGTTAAGGCCAGCCAT+AGG | - | chr7_3:79916681-79916700 | None:intergenic | 50.0% | |
TTATAGGTCTATGCCCTGCC+CGG | + | chr7_3:79916728-79916747 | Msa1128120:intron | 50.0% | |
GGAGGTTCACCTACGTACAT+TGG | - | chr7_3:79916845-79916864 | None:intergenic | 50.0% | |
CGCAAAAACCGATCCTTGGA+AGG | + | chr7_3:79917195-79917214 | Msa1128120:CDS | 50.0% | |
CTTGCAGACCTTCCAAGGAT+CGG | - | chr7_3:79917206-79917225 | None:intergenic | 50.0% | |
GCAGAGGCTGAAGACATACA+AGG | + | chr7_3:79917233-79917252 | Msa1128120:CDS | 50.0% | |
TCTTGGGAAGACGACCAACT+TGG | - | chr7_3:79917259-79917278 | None:intergenic | 50.0% | |
GATGGCTTCTCCCTCACAAT+TGG | - | chr7_3:79917496-79917515 | None:intergenic | 50.0% | |
TCTTCAGTCTGGCACCCAAA+TGG | - | chr7_3:79917600-79917619 | None:intergenic | 50.0% | |
ATTTGGGTGCCAGACTGAAG+AGG | + | chr7_3:79917599-79917618 | Msa1128120:CDS | 50.0% | |
TTTGGGTGCCAGACTGAAGA+GGG | + | chr7_3:79917600-79917619 | Msa1128120:CDS | 50.0% | |
CTTGTCTTCCTTCTCTGCCT+CGG | - | chr7_3:79917629-79917648 | None:intergenic | 50.0% | |
GGGGAAATGATATGGAGCGC+TGG | + | chr7_3:79915563-79915582 | Msa1128120:intron | 55.0% | |
CGTCTTCTCGTCTTCCTTGC+AGG | - | chr7_3:79915856-79915875 | None:intergenic | 55.0% | |
TCGCCGCAAAAACCGATCCT+TGG | + | chr7_3:79917191-79917210 | Msa1128120:CDS | 55.0% | |
!! | GTTGGCTTGCAGACCTTCCA+AGG | - | chr7_3:79917211-79917230 | None:intergenic | 55.0% |
TGTCTTCAGCCTCTGCACGT+TGG | - | chr7_3:79917229-79917248 | None:intergenic | 55.0% | |
TGACCTTGCGTGCACGTCTT+GGG | - | chr7_3:79917275-79917294 | None:intergenic | 55.0% | |
TTGACCTTGCGTGCACGTCT+TGG | - | chr7_3:79917276-79917295 | None:intergenic | 55.0% | |
AAGACGTGCACGCAAGGTCA+AGG | + | chr7_3:79917275-79917294 | Msa1128120:CDS | 55.0% | |
CCTGCGGCGATTTCACGAGT+AGG | - | chr7_3:79915240-79915259 | None:intergenic | 60.0% | |
CCTACTCGTGAAATCGCCGC+AGG | + | chr7_3:79915237-79915256 | Msa1128120:five_prime_UTR | 60.0% | |
! | GTGGGCACTGCTGCCATCAA+TGG | - | chr7_3:79915384-79915403 | None:intergenic | 60.0% |
GTGGTCCAGCTGTAGGCCTT+GGG | - | chr7_3:79916025-79916044 | None:intergenic | 60.0% | |
AGTGGTCCAGCTGTAGGCCT+TGG | - | chr7_3:79916026-79916045 | None:intergenic | 60.0% | |
GTCTGCAAGCCAACGTGCAG+AGG | + | chr7_3:79917217-79917236 | Msa1128120:CDS | 60.0% | |
CTTCCCAAGACGTGCACGCA+AGG | + | chr7_3:79917269-79917288 | Msa1128120:CDS | 60.0% | |
GGCTGGTGATTCCACTCCTG+AGG | + | chr7_3:79917432-79917451 | Msa1128120:intron | 60.0% | |
GGCCTACAGCTGGACCACTC+AGG | + | chr7_3:79916027-79916046 | Msa1128120:CDS | 65.0% | |
GGCCTGAGTGGTCCAGCTGT+AGG | - | chr7_3:79916032-79916051 | None:intergenic | 65.0% | |
CTCGGCAGCCCTCTTCAGTC+TGG | - | chr7_3:79917611-79917630 | None:intergenic | 65.0% | |
CAGACTGAAGAGGGCTGCCG+AGG | + | chr7_3:79917609-79917628 | Msa1128120:CDS | 65.0% | |
GAGGGCTGCCGAGGCAGAGA+AGG | + | chr7_3:79917618-79917637 | Msa1128120:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 79915194 | 79917971 | 79915194 | ID=Msa1128120;Name=Msa1128120 |
chr7_3 | mRNA | 79915194 | 79917971 | 79915194 | ID=Msa1128120-mRNA-1;Parent=Msa1128120;Name=Msa1128120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=77|1|1|1|0.6|0.33|6|295|207 |
chr7_3 | exon | 79915194 | 79915258 | 79915194 | ID=Msa1128120-mRNA-1:exon:22694;Parent=Msa1128120-mRNA-1 |
chr7_3 | exon | 79915760 | 79915880 | 79915760 | ID=Msa1128120-mRNA-1:exon:22695;Parent=Msa1128120-mRNA-1 |
chr7_3 | exon | 79915994 | 79916127 | 79915994 | ID=Msa1128120-mRNA-1:exon:22696;Parent=Msa1128120-mRNA-1 |
chr7_3 | exon | 79917138 | 79917296 | 79917138 | ID=Msa1128120-mRNA-1:exon:22697;Parent=Msa1128120-mRNA-1 |
chr7_3 | exon | 79917433 | 79917890 | 79917433 | ID=Msa1128120-mRNA-1:exon:22698;Parent=Msa1128120-mRNA-1 |
chr7_3 | exon | 79917913 | 79917971 | 79917913 | ID=Msa1128120-mRNA-1:exon:22699;Parent=Msa1128120-mRNA-1 |
chr7_3 | five_prime_UTR | 79915194 | 79915258 | 79915194 | ID=Msa1128120-mRNA-1:five_prime_utr;Parent=Msa1128120-mRNA-1 |
chr7_3 | five_prime_UTR | 79915760 | 79915771 | 79915760 | ID=Msa1128120-mRNA-1:five_prime_utr;Parent=Msa1128120-mRNA-1 |
chr7_3 | CDS | 79915772 | 79915880 | 79915772 | ID=Msa1128120-mRNA-1:cds;Parent=Msa1128120-mRNA-1 |
chr7_3 | CDS | 79915994 | 79916127 | 79915994 | ID=Msa1128120-mRNA-1:cds;Parent=Msa1128120-mRNA-1 |
chr7_3 | CDS | 79917138 | 79917296 | 79917138 | ID=Msa1128120-mRNA-1:cds;Parent=Msa1128120-mRNA-1 |
chr7_3 | CDS | 79917433 | 79917654 | 79917433 | ID=Msa1128120-mRNA-1:cds;Parent=Msa1128120-mRNA-1 |
chr7_3 | three_prime_UTR | 79917655 | 79917890 | 79917655 | ID=Msa1128120-mRNA-1:three_prime_utr;Parent=Msa1128120-mRNA-1 |
chr7_3 | three_prime_UTR | 79917913 | 79917971 | 79917913 | ID=Msa1128120-mRNA-1:three_prime_utr;Parent=Msa1128120-mRNA-1 |
Gene Sequence |
Protein sequence |