AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1128120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128120 MtrunA17_Chr7g0271401 99.034 207 2 0 1 207 1 207 2.09e-151 418
Msa1128120 MtrunA17_Chr5g0409231 98.551 207 3 0 1 207 1 207 1.03e-150 416
Msa1128120 MtrunA17_Chr1g0155011 97.585 207 5 0 1 207 1 207 2.47e-149 413
Msa1128120 MtrunA17_Chr8g0369561 86.538 52 7 0 133 184 6 57 5.28e-27 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128120 AT3G49010.3 87.435 191 24 0 2 192 1 191 2.48e-126 355
Msa1128120 AT3G49010.6 87.435 191 24 0 2 192 1 191 2.48e-126 355
Msa1128120 AT3G49010.1 87.435 191 24 0 2 192 1 191 2.48e-126 355
Msa1128120 AT3G49010.2 87.435 191 24 0 2 192 1 191 2.48e-126 355
Msa1128120 AT3G49010.7 87.435 191 24 0 2 192 1 191 2.48e-126 355
Msa1128120 AT3G49010.4 86.387 191 24 1 2 192 1 189 4.17e-123 347
Msa1128120 AT5G23900.1 85.484 186 27 0 2 187 1 186 1.72e-119 338
Msa1128120 AT3G48960.1 77.083 192 44 0 2 193 1 192 4.73e-109 311
Msa1128120 AT3G49010.5 61.257 191 21 1 2 192 1 138 3.91e-78 231

Find 70 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGAAATGAAGGCATTTA+AGG 0.167170 7_3:+79917537 Msa1128120:CDS
CGTCTTCTCGTCTTCCTTGC+AGG 0.238053 7_3:-79915853 None:intergenic
TGTTGGTTTAACTAGCATTC+TGG 0.306744 7_3:+79917803 Msa1128120:three_prime_UTR
AAGAGTAATGTGGCAGAAAA+TGG 0.317572 7_3:-79915206 None:intergenic
TTGACCTTGCGTGCACGTCT+TGG 0.342253 7_3:-79917273 None:intergenic
GCGAACAAACAAACGCCATT+TGG 0.357834 7_3:+79917582 Msa1128120:CDS
CGAACAAACAAACGCCATTT+GGG 0.361720 7_3:+79917583 Msa1128120:CDS
AGTGGTCCAGCTGTAGGCCT+TGG 0.374314 7_3:-79916023 None:intergenic
TGCTTGCGGAAGTGTTCATT+AGG 0.386045 7_3:-79915796 None:intergenic
TGACCTTGCGTGCACGTCTT+GGG 0.387927 7_3:-79917272 None:intergenic
TGAGTCTGTCCATGAACAAT+AGG 0.403921 7_3:-79916050 None:intergenic
AGAAATACAACATGAAACTA+AGG 0.404501 7_3:+79916072 Msa1128120:CDS
CTCGGCAGCCCTCTTCAGTC+TGG 0.408929 7_3:-79917608 None:intergenic
AGAAAATGGAGAGTAGGGTT+AGG 0.414856 7_3:-79915192 None:intergenic
CCACTCAGGCCTATTGTTCA+TGG 0.419917 7_3:+79916041 Msa1128120:CDS
AGACAAGAAGTGAAAACTTA+AGG 0.420622 7_3:+79917642 Msa1128120:exon
CTTCTCCCTTGAGGAGTTGA+AGG 0.436371 7_3:+79916106 Msa1128120:CDS
GTCTTGCAATAACTATCATA+AGG 0.439762 7_3:-79917686 None:intergenic
GTAGCATTTGCTAGTTCCTC+AGG 0.441712 7_3:-79917448 None:intergenic
GAAAATGGAGAGTAGGGTTA+GGG 0.457489 7_3:-79915191 None:intergenic
TCTTCAGTCTGGCACCCAAA+TGG 0.461938 7_3:-79917597 None:intergenic
GCTTGCGGAAGTGTTCATTA+GGG 0.463786 7_3:-79915795 None:intergenic
TAAGATTACAAATGAAATGA+AGG 0.465235 7_3:+79917528 Msa1128120:CDS
GTATGGCTATTCAAGTTTGT+TGG 0.466014 7_3:+79917786 Msa1128120:three_prime_UTR
GATGGCTTCTCCCTCACAAT+TGG 0.470493 7_3:-79917493 None:intergenic
GAGGGCTGCCGAGGCAGAGA+AGG 0.474906 7_3:+79917618 Msa1128120:CDS
CTTGTCTTCCTTCTCTGCCT+CGG 0.482926 7_3:-79917626 None:intergenic
GTGGTCCAGCTGTAGGCCTT+GGG 0.485461 7_3:-79916022 None:intergenic
GTGGCAGAAAATGGAGAGTA+GGG 0.486654 7_3:-79915197 None:intergenic
TCTTGCAATAACTATCATAA+GGG 0.491378 7_3:-79917685 None:intergenic
TGTGGCAGAAAATGGAGAGT+AGG 0.497248 7_3:-79915198 None:intergenic
CTTGCAGACCTTCCAAGGAT+CGG 0.513686 7_3:-79917203 None:intergenic
GCAAATGCTACACAGGTTCA+AGG 0.515568 7_3:+79917460 Msa1128120:CDS
TTCTCGTCTTCCTTGCAGGT+TGG 0.518598 7_3:-79915849 None:intergenic
TCGACAGAAATACCAATAGT+TGG 0.524260 7_3:-79917165 None:intergenic
TGTTTACCTTCAACTCCTCA+AGG 0.536157 7_3:-79916112 None:intergenic
GTTGGCTTGCAGACCTTCCA+AGG 0.544997 7_3:-79917208 None:intergenic
CTTCCCAAGACGTGCACGCA+AGG 0.546682 7_3:+79917269 Msa1128120:CDS
ATGAACACTTCCGCAAGCAT+TGG 0.548841 7_3:+79915800 Msa1128120:CDS
ATGAAACTAAGGGCTGGTAA+AGG 0.560135 7_3:+79916083 Msa1128120:CDS
GAAATACAACATGAAACTAA+GGG 0.563936 7_3:+79916073 Msa1128120:CDS
AGGAAGACGAGAAGACGCTT+AGG 0.564086 7_3:+79915859 Msa1128120:CDS
TCTTGGGAAGACGACCAACT+TGG 0.564678 7_3:-79917256 None:intergenic
AAGACGTGCACGCAAGGTCA+AGG 0.565249 7_3:+79917275 Msa1128120:CDS
TACAACATGAAACTAAGGGC+TGG 0.568361 7_3:+79916077 Msa1128120:CDS
TTCATACTTACCAATTGTGA+GGG 0.574179 7_3:+79917483 Msa1128120:CDS
CAGACTGAAGAGGGCTGCCG+AGG 0.574750 7_3:+79917609 Msa1128120:CDS
GTCTGCAAGCCAACGTGCAG+AGG 0.583501 7_3:+79917217 Msa1128120:CDS
TGGTAAAGGCTTCTCCCTTG+AGG 0.585769 7_3:+79916097 Msa1128120:CDS
AGGCCTTGGGAAAATCTTCA+CGG 0.587332 7_3:-79916009 None:intergenic
GTTCATACTTACCAATTGTG+AGG 0.591073 7_3:+79917482 Msa1128120:CDS
ATTTGGGTGCCAGACTGAAG+AGG 0.592370 7_3:+79917599 Msa1128120:CDS
AAATTGCTTAGTTTGAGACA+TGG 0.594953 7_3:+79917738 Msa1128120:three_prime_UTR
GGCTGGTGATTCCACTCCTG+AGG 0.595885 7_3:+79917432 Msa1128120:intron
GAAGACATACAAGGCCAAGT+TGG 0.599063 7_3:+79917242 Msa1128120:CDS
GGCCTACAGCTGGACCACTC+AGG 0.602263 7_3:+79916027 Msa1128120:CDS
ATCTTAACAAGCTCTACAGA+TGG 0.608105 7_3:-79917511 None:intergenic
TTTGGGTGCCAGACTGAAGA+GGG 0.608247 7_3:+79917600 Msa1128120:CDS
GGCAAAACTATGTCAAGACA+TGG 0.612396 7_3:+79915821 Msa1128120:CDS
ATTTGCTAGTTCCTCAGGAG+TGG 0.614969 7_3:-79917443 None:intergenic
CCTACTCGTGAAATCGCCGC+AGG 0.621744 7_3:+79915237 Msa1128120:five_prime_UTR
TGTCTTCAGCCTCTGCACGT+TGG 0.625495 7_3:-79917226 None:intergenic
GTTTACCTTCAACTCCTCAA+GGG 0.627618 7_3:-79916111 None:intergenic
GGCCTGAGTGGTCCAGCTGT+AGG 0.635974 7_3:-79916029 None:intergenic
GGAACTAGCAAATGCTACAC+AGG 0.641783 7_3:+79917453 Msa1128120:CDS
CATGGTTTAACCAACCTGCA+AGG 0.654567 7_3:+79915839 Msa1128120:CDS
CCATGAACAATAGGCCTGAG+TGG 0.655173 7_3:-79916041 None:intergenic
GGAGCAGCTGAAGAGTAATG+TGG 0.668061 7_3:-79915216 None:intergenic
CCTGCGGCGATTTCACGAGT+AGG 0.671313 7_3:-79915237 None:intergenic
GCAGAGGCTGAAGACATACA+AGG 0.685449 7_3:+79917233 Msa1128120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAGAATATGTAATAAA+TGG + chr7_3:79916380-79916399 Msa1128120:intron 10.0%
!! TAAATTATAATAATATCATC+AGG - chr7_3:79916468-79916487 None:intergenic 10.0%
!!! CAGATTTTTTATTTGTTTTT+GGG + chr7_3:79915543-79915562 Msa1128120:intron 15.0%
!!! AGATTTTTTATTTGTTTTTG+GGG + chr7_3:79915544-79915563 Msa1128120:intron 15.0%
!!! AAATTCTAGATATTTACTTT+TGG + chr7_3:79916216-79916235 Msa1128120:intron 15.0%
!! AAAAACAAACTCAATTAAAT+TGG - chr7_3:79916653-79916672 None:intergenic 15.0%
!!! TTAATTGAGTTTGTTTTTTA+AGG + chr7_3:79916655-79916674 Msa1128120:intron 15.0%
!!! TTTCTTCTATTTTATAATGT+AGG + chr7_3:79917116-79917135 Msa1128120:intron 15.0%
!!! AATTGATTATGCTTTTGAAT+TGG + chr7_3:79915404-79915423 Msa1128120:intron 20.0%
!!! GCAGATTTTTTATTTGTTTT+TGG + chr7_3:79915542-79915561 Msa1128120:intron 20.0%
!! CAAAAAACAATATATCAGAA+AGG - chr7_3:79915726-79915745 None:intergenic 20.0%
!!! CTTTCTGATATATTGTTTTT+TGG + chr7_3:79915724-79915743 Msa1128120:intron 20.0%
!!! TTTGATTTATTTGTCTTGAT+GGG + chr7_3:79915956-79915975 Msa1128120:intron 20.0%
!!! TTTTAGCATTATCAAAAAAG+TGG + chr7_3:79916180-79916199 Msa1128120:intron 20.0%
!! AAACTAAAAACTCTTAAAAC+CGG - chr7_3:79916750-79916769 None:intergenic 20.0%
!!! TTTTTACTTTACCTTTTCAA+TGG + chr7_3:79917082-79917101 Msa1128120:intron 20.0%
!! TAAGAAATAAACCATTGAAA+AGG - chr7_3:79917096-79917115 None:intergenic 20.0%
!!! TATGACCTTTTTCTTAATTT+TGG + chr7_3:79917329-79917348 Msa1128120:intron 20.0%
!! TAAGATTACAAATGAAATGA+AGG + chr7_3:79917528-79917547 Msa1128120:CDS 20.0%
!!! TTAGCATGTTTTATTTTTCA+TGG + chr7_3:79917831-79917850 Msa1128120:three_prime_UTR 20.0%
!!! TAGCATGTTTTATTTTTCAT+GGG + chr7_3:79917832-79917851 Msa1128120:three_prime_UTR 20.0%
!! TCAAAAGCATAATCAATTGT+GGG - chr7_3:79915402-79915421 None:intergenic 25.0%
!! TTCAAAAGCATAATCAATTG+TGG - chr7_3:79915403-79915422 None:intergenic 25.0%
! TGAGAAAGAATGTATATATG+CGG + chr7_3:79915458-79915477 Msa1128120:intron 25.0%
! ATAAAAAATCTGCACTATTG+AGG - chr7_3:79915535-79915554 None:intergenic 25.0%
!!! GTTTTTTGGTTGATATTTGA+AGG + chr7_3:79915738-79915757 Msa1128120:intron 25.0%
!! CTTTGATTTATTTGTCTTGA+TGG + chr7_3:79915955-79915974 Msa1128120:intron 25.0%
! AGAAATACAACATGAAACTA+AGG + chr7_3:79916072-79916091 Msa1128120:CDS 25.0%
! GAAATACAACATGAAACTAA+GGG + chr7_3:79916073-79916092 Msa1128120:CDS 25.0%
! AAATTGCAAGTCACTAAAAA+CGG + chr7_3:79916279-79916298 Msa1128120:intron 25.0%
! ATAGGTAAAAATACTCCATA+TGG - chr7_3:79916618-79916637 None:intergenic 25.0%
!!! TATGGAGTATTTTTACCTAT+AGG + chr7_3:79916618-79916637 Msa1128120:intron 25.0%
!!! AGTATTTTTACCTATAGGAT+TGG + chr7_3:79916623-79916642 Msa1128120:intron 25.0%
! AACTAAAAACTCTTAAAACC+GGG - chr7_3:79916749-79916768 None:intergenic 25.0%
!! ACAACTAAAGTAGATTTTGA+TGG - chr7_3:79916786-79916805 None:intergenic 25.0%
! AAATCTACTTTAGTTGTTAC+AGG + chr7_3:79916789-79916808 Msa1128120:intron 25.0%
!! AAGAAATCATGGATTATACA+AGG - chr7_3:79916866-79916885 None:intergenic 25.0%
!! AATATGATTAGTGTTTTCAG+TGG - chr7_3:79916899-79916918 None:intergenic 25.0%
! TTCAAATTTATCAGCAATGA+CGG - chr7_3:79917357-79917376 None:intergenic 25.0%
! GCATTATTCTTAATTTCTTC+TGG + chr7_3:79917391-79917410 Msa1128120:intron 25.0%
!!! AAATGAAATGAAGGCATTTA+AGG + chr7_3:79917537-79917556 Msa1128120:CDS 25.0%
! TCTTGCAATAACTATCATAA+GGG - chr7_3:79917688-79917707 None:intergenic 25.0%
GCATATATACATTCTTTCTC+AGG - chr7_3:79915459-79915478 None:intergenic 30.0%
! ACTATTGAGGTTTTACGAAT+TGG - chr7_3:79915522-79915541 None:intergenic 30.0%
!!! TTGTTTTTGGGGAAATGATA+TGG + chr7_3:79915555-79915574 Msa1128120:intron 30.0%
! TTGGTTGATATTTGAAGGTA+AGG + chr7_3:79915743-79915762 Msa1128120:intron 30.0%
TTTGAAGGTAAGGTGAAAAA+TGG + chr7_3:79915753-79915772 Msa1128120:intron 30.0%
TAAAAATACTCCATATGGAC+AGG - chr7_3:79916613-79916632 None:intergenic 30.0%
!!! AGTTTGTTTTTTAAGGCCTA+TGG + chr7_3:79916662-79916681 Msa1128120:intron 30.0%
! AAATCATGGATTATACAAGG+AGG - chr7_3:79916863-79916882 None:intergenic 30.0%
GTGTATAAGCAAAGAAATCA+TGG - chr7_3:79916877-79916896 None:intergenic 30.0%
TCACAACTGAAGAGAATATT+CGG - chr7_3:79916944-79916963 None:intergenic 30.0%
GACAGAATTGAATATGAAAC+AGG - chr7_3:79916967-79916986 None:intergenic 30.0%
! TATTTTATAATGTAGGCTGC+TGG + chr7_3:79917123-79917142 Msa1128120:intron 30.0%
CGGTACCAAAATTAAGAAAA+AGG - chr7_3:79917337-79917356 None:intergenic 30.0%
CAGCCTGAAAATAAAAAACA+GGG - chr7_3:79917417-79917436 None:intergenic 30.0%
TTCATACTTACCAATTGTGA+GGG + chr7_3:79917483-79917502 Msa1128120:CDS 30.0%
AGACAAGAAGTGAAAACTTA+AGG + chr7_3:79917642-79917661 Msa1128120:exon 30.0%
GTCTTGCAATAACTATCATA+AGG - chr7_3:79917689-79917708 None:intergenic 30.0%
! AAATTGCTTAGTTTGAGACA+TGG + chr7_3:79917738-79917757 Msa1128120:three_prime_UTR 30.0%
!!! TGCTGTTATTTTGTGAAGTA+TGG + chr7_3:79917769-79917788 Msa1128120:three_prime_UTR 30.0%
TGCAGACAAAATTCTTTGAA+GGG + chr7_3:79917874-79917893 Msa1128120:intron 30.0%
AAGAGTAATGTGGCAGAAAA+TGG - chr7_3:79915209-79915228 None:intergenic 35.0%
AGTTGTGATTGGAATGTGAA+AGG - chr7_3:79915284-79915303 None:intergenic 35.0%
ACAGTTCTGTGTAGCAAAAA+GGG - chr7_3:79915433-79915452 None:intergenic 35.0%
AACAGTTCTGTGTAGCAAAA+AGG - chr7_3:79915434-79915453 None:intergenic 35.0%
ACACATGGATGGATGATTTA+TGG - chr7_3:79915493-79915512 None:intergenic 35.0%
AAATCATCCATCCATGTGTT+TGG + chr7_3:79915494-79915513 Msa1128120:intron 35.0%
! TAAGATGAGAAAAGCGGATT+CGG - chr7_3:79915632-79915651 None:intergenic 35.0%
! GAGATCTAAGATGAGAAAAG+CGG - chr7_3:79915638-79915657 None:intergenic 35.0%
CAAGCTCTATGTGAAATTAC+AGG + chr7_3:79916435-79916454 Msa1128120:intron 35.0%
AACCCTGACAATCAAGTTAT+AGG + chr7_3:79916712-79916731 Msa1128120:intron 35.0%
GACCTATAACTTGATTGTCA+GGG - chr7_3:79916717-79916736 None:intergenic 35.0%
AGACCTATAACTTGATTGTC+AGG - chr7_3:79916718-79916737 None:intergenic 35.0%
TACTAGATGCACTCAAACTA+AGG - chr7_3:79917025-79917044 None:intergenic 35.0%
! ATAGTTGGAGCAAGCTTTTT+GGG - chr7_3:79917153-79917172 None:intergenic 35.0%
! AATAGTTGGAGCAAGCTTTT+TGG - chr7_3:79917154-79917173 None:intergenic 35.0%
! AAAAAGCTTGCTCCAACTAT+TGG + chr7_3:79917153-79917172 Msa1128120:CDS 35.0%
TCGACAGAAATACCAATAGT+TGG - chr7_3:79917168-79917187 None:intergenic 35.0%
!!! TGGCCCTGTTTTTTATTTTC+AGG + chr7_3:79917411-79917430 Msa1128120:intron 35.0%
CCAGCCTGAAAATAAAAAAC+AGG - chr7_3:79917418-79917437 None:intergenic 35.0%
!!! CCTGTTTTTTATTTTCAGGC+TGG + chr7_3:79917415-79917434 Msa1128120:intron 35.0%
GTTCATACTTACCAATTGTG+AGG + chr7_3:79917482-79917501 Msa1128120:CDS 35.0%
ATCTTAACAAGCTCTACAGA+TGG - chr7_3:79917514-79917533 None:intergenic 35.0%
! GTATGGCTATTCAAGTTTGT+TGG + chr7_3:79917786-79917805 Msa1128120:three_prime_UTR 35.0%
!! TGTTGGTTTAACTAGCATTC+TGG + chr7_3:79917803-79917822 Msa1128120:three_prime_UTR 35.0%
CTGCAGACAAAATTCTTTGA+AGG + chr7_3:79917873-79917892 Msa1128120:intron 35.0%
! GACAAAATTCTTTGAAGGGT+TGG + chr7_3:79917878-79917897 Msa1128120:intron 35.0%
GATTGGAATGTGAAAGGAGA+AGG - chr7_3:79915278-79915297 None:intergenic 40.0%
CACATTCCAATCACAACTCT+TGG + chr7_3:79915286-79915305 Msa1128120:intron 40.0%
! AAAGCACCAAGAGTTGTGAT+TGG - chr7_3:79915295-79915314 None:intergenic 40.0%
!!! ACAACTCTTGGTGCTTTTCT+CGG + chr7_3:79915298-79915317 Msa1128120:intron 40.0%
AATCGCAAAATGCTAGCTGA+TGG + chr7_3:79915348-79915367 Msa1128120:intron 40.0%
!! CATAGTTTTGCCAATGCTTG+CGG - chr7_3:79915813-79915832 None:intergenic 40.0%
GGCAAAACTATGTCAAGACA+TGG + chr7_3:79915821-79915840 Msa1128120:CDS 40.0%
! ATTTTCAGCTCGTCAGAAGA+AGG + chr7_3:79915986-79916005 Msa1128120:intron 40.0%
TGAGTCTGTCCATGAACAAT+AGG - chr7_3:79916053-79916072 None:intergenic 40.0%
TACAACATGAAACTAAGGGC+TGG + chr7_3:79916077-79916096 Msa1128120:CDS 40.0%
! ATGAAACTAAGGGCTGGTAA+AGG + chr7_3:79916083-79916102 Msa1128120:CDS 40.0%
GTTTACCTTCAACTCCTCAA+GGG - chr7_3:79916114-79916133 None:intergenic 40.0%
TGTTTACCTTCAACTCCTCA+AGG - chr7_3:79916115-79916134 None:intergenic 40.0%
! TGTATTGGTGTGGATTGCAA+AGG - chr7_3:79916528-79916547 None:intergenic 40.0%
TTGCAATCCACACCAATACA+TGG + chr7_3:79916528-79916547 Msa1128120:intron 40.0%
GCAAACGCAATTCCATGTAT+TGG - chr7_3:79916543-79916562 None:intergenic 40.0%
ACTTGACAACAGGTTTGTAC+TGG - chr7_3:79916583-79916602 None:intergenic 40.0%
AGTACAAACCTGTTGTCAAG+TGG + chr7_3:79916582-79916601 Msa1128120:intron 40.0%
AATACTCCATATGGACAGGT+TGG - chr7_3:79916609-79916628 None:intergenic 40.0%
! AATTGGCTAGCCAATCCTAT+AGG - chr7_3:79916636-79916655 None:intergenic 40.0%
!!! TGTTTTTTAAGGCCTATGGC+TGG + chr7_3:79916666-79916685 Msa1128120:intron 40.0%
TGATTGTCAGGGTTCCTAAA+CGG - chr7_3:79916706-79916725 None:intergenic 40.0%
AAAACTCTTAAAACCGGGCA+GGG - chr7_3:79916744-79916763 None:intergenic 40.0%
AAAAACTCTTAAAACCGGGC+AGG - chr7_3:79916745-79916764 None:intergenic 40.0%
!! GTAGATTTTGATGGTCATGC+TGG - chr7_3:79916777-79916796 None:intergenic 40.0%
GGTCAAGGTAATGCAAATTG+CGG + chr7_3:79917290-79917309 Msa1128120:intron 40.0%
CGAACAAACAAACGCCATTT+GGG + chr7_3:79917583-79917602 Msa1128120:CDS 40.0%
GTGGCAGAAAATGGAGAGTA+GGG - chr7_3:79915200-79915219 None:intergenic 45.0%
TGTGGCAGAAAATGGAGAGT+AGG - chr7_3:79915201-79915220 None:intergenic 45.0%
AAGGAGAAGGTGAGAGAATG+AGG - chr7_3:79915265-79915284 None:intergenic 45.0%
!!! CTTGGTGCTTTTCTCGGATT+CGG + chr7_3:79915304-79915323 Msa1128120:intron 45.0%
! GCTTTTCTCGGATTCGGATT+CGG + chr7_3:79915310-79915329 Msa1128120:intron 45.0%
TGGCAAAGCTCAACCATTGA+TGG + chr7_3:79915368-79915387 Msa1128120:intron 45.0%
!! ATTGGTGCCAAACACATGGA+TGG - chr7_3:79915504-79915523 None:intergenic 45.0%
!! ACGAATTGGTGCCAAACACA+TGG - chr7_3:79915508-79915527 None:intergenic 45.0%
ATTCATCATAGGGTGACTGC+AGG + chr7_3:79915586-79915605 Msa1128120:intron 45.0%
! GAAAAGCGGATTCGGATTCA+CGG - chr7_3:79915624-79915643 None:intergenic 45.0%
!! GCTTGCGGAAGTGTTCATTA+GGG - chr7_3:79915798-79915817 None:intergenic 45.0%
!! TGCTTGCGGAAGTGTTCATT+AGG - chr7_3:79915799-79915818 None:intergenic 45.0%
ATGAACACTTCCGCAAGCAT+TGG + chr7_3:79915800-79915819 Msa1128120:CDS 45.0%
CATGGTTTAACCAACCTGCA+AGG + chr7_3:79915839-79915858 Msa1128120:CDS 45.0%
AGGCCTTGGGAAAATCTTCA+CGG - chr7_3:79916012-79916031 None:intergenic 45.0%
! CGCAATTCCATGTATTGGTG+TGG - chr7_3:79916538-79916557 None:intergenic 45.0%
CCTAAACGGCATACGAGTTA+AGG - chr7_3:79916692-79916711 None:intergenic 45.0%
! CCTTAACTCGTATGCCGTTT+AGG + chr7_3:79916689-79916708 Msa1128120:intron 45.0%
CACCAATCTCCAATGTACGT+AGG + chr7_3:79916833-79916852 Msa1128120:intron 45.0%
CACCTACGTACATTGGAGAT+TGG - chr7_3:79916838-79916857 None:intergenic 45.0%
!! CTTCCAAGGATCGGTTTTTG+CGG - chr7_3:79917197-79917216 None:intergenic 45.0%
GAAGACATACAAGGCCAAGT+TGG + chr7_3:79917242-79917261 Msa1128120:CDS 45.0%
! ATTTGCTAGTTCCTCAGGAG+TGG - chr7_3:79917446-79917465 None:intergenic 45.0%
! GTAGCATTTGCTAGTTCCTC+AGG - chr7_3:79917451-79917470 None:intergenic 45.0%
GGAACTAGCAAATGCTACAC+AGG + chr7_3:79917453-79917472 Msa1128120:CDS 45.0%
GCAAATGCTACACAGGTTCA+AGG + chr7_3:79917460-79917479 Msa1128120:CDS 45.0%
GCGAACAAACAAACGCCATT+TGG + chr7_3:79917582-79917601 Msa1128120:CDS 45.0%
GGAGCAGCTGAAGAGTAATG+TGG - chr7_3:79915219-79915238 None:intergenic 50.0%
! GTGAGAGAATGAGGTACCTG+CGG - chr7_3:79915256-79915275 None:intergenic 50.0%
CGGATTCGGATTCGGATTCA+CGG + chr7_3:79915318-79915337 Msa1128120:intron 50.0%
!! TGGAGCGCTGGATTCATCAT+AGG + chr7_3:79915575-79915594 Msa1128120:intron 50.0%
!! GGAGCGCTGGATTCATCATA+GGG + chr7_3:79915576-79915595 Msa1128120:intron 50.0%
TTCTCGTCTTCCTTGCAGGT+TGG - chr7_3:79915852-79915871 None:intergenic 50.0%
AGGAAGACGAGAAGACGCTT+AGG + chr7_3:79915859-79915878 Msa1128120:CDS 50.0%
! AGGCCGTGAAGATTTTCCCA+AGG + chr7_3:79916006-79916025 Msa1128120:CDS 50.0%
! ATTTTCCCAAGGCCTACAGC+TGG + chr7_3:79916017-79916036 Msa1128120:CDS 50.0%
CCATGAACAATAGGCCTGAG+TGG - chr7_3:79916044-79916063 None:intergenic 50.0%
CCACTCAGGCCTATTGTTCA+TGG + chr7_3:79916041-79916060 Msa1128120:CDS 50.0%
TGGTAAAGGCTTCTCCCTTG+AGG + chr7_3:79916097-79916116 Msa1128120:CDS 50.0%
CTTCTCCCTTGAGGAGTTGA+AGG + chr7_3:79916106-79916125 Msa1128120:CDS 50.0%
! AGGTTGGTCCACTTGACAAC+AGG - chr7_3:79916593-79916612 None:intergenic 50.0%
AGTGGACCAACCTGTCCATA+TGG + chr7_3:79916600-79916619 Msa1128120:intron 50.0%
TACGAGTTAAGGCCAGCCAT+AGG - chr7_3:79916681-79916700 None:intergenic 50.0%
TTATAGGTCTATGCCCTGCC+CGG + chr7_3:79916728-79916747 Msa1128120:intron 50.0%
GGAGGTTCACCTACGTACAT+TGG - chr7_3:79916845-79916864 None:intergenic 50.0%
CGCAAAAACCGATCCTTGGA+AGG + chr7_3:79917195-79917214 Msa1128120:CDS 50.0%
CTTGCAGACCTTCCAAGGAT+CGG - chr7_3:79917206-79917225 None:intergenic 50.0%
GCAGAGGCTGAAGACATACA+AGG + chr7_3:79917233-79917252 Msa1128120:CDS 50.0%
TCTTGGGAAGACGACCAACT+TGG - chr7_3:79917259-79917278 None:intergenic 50.0%
GATGGCTTCTCCCTCACAAT+TGG - chr7_3:79917496-79917515 None:intergenic 50.0%
TCTTCAGTCTGGCACCCAAA+TGG - chr7_3:79917600-79917619 None:intergenic 50.0%
ATTTGGGTGCCAGACTGAAG+AGG + chr7_3:79917599-79917618 Msa1128120:CDS 50.0%
TTTGGGTGCCAGACTGAAGA+GGG + chr7_3:79917600-79917619 Msa1128120:CDS 50.0%
CTTGTCTTCCTTCTCTGCCT+CGG - chr7_3:79917629-79917648 None:intergenic 50.0%
GGGGAAATGATATGGAGCGC+TGG + chr7_3:79915563-79915582 Msa1128120:intron 55.0%
CGTCTTCTCGTCTTCCTTGC+AGG - chr7_3:79915856-79915875 None:intergenic 55.0%
TCGCCGCAAAAACCGATCCT+TGG + chr7_3:79917191-79917210 Msa1128120:CDS 55.0%
!! GTTGGCTTGCAGACCTTCCA+AGG - chr7_3:79917211-79917230 None:intergenic 55.0%
TGTCTTCAGCCTCTGCACGT+TGG - chr7_3:79917229-79917248 None:intergenic 55.0%
TGACCTTGCGTGCACGTCTT+GGG - chr7_3:79917275-79917294 None:intergenic 55.0%
TTGACCTTGCGTGCACGTCT+TGG - chr7_3:79917276-79917295 None:intergenic 55.0%
AAGACGTGCACGCAAGGTCA+AGG + chr7_3:79917275-79917294 Msa1128120:CDS 55.0%
CCTGCGGCGATTTCACGAGT+AGG - chr7_3:79915240-79915259 None:intergenic 60.0%
CCTACTCGTGAAATCGCCGC+AGG + chr7_3:79915237-79915256 Msa1128120:five_prime_UTR 60.0%
! GTGGGCACTGCTGCCATCAA+TGG - chr7_3:79915384-79915403 None:intergenic 60.0%
GTGGTCCAGCTGTAGGCCTT+GGG - chr7_3:79916025-79916044 None:intergenic 60.0%
AGTGGTCCAGCTGTAGGCCT+TGG - chr7_3:79916026-79916045 None:intergenic 60.0%
GTCTGCAAGCCAACGTGCAG+AGG + chr7_3:79917217-79917236 Msa1128120:CDS 60.0%
CTTCCCAAGACGTGCACGCA+AGG + chr7_3:79917269-79917288 Msa1128120:CDS 60.0%
GGCTGGTGATTCCACTCCTG+AGG + chr7_3:79917432-79917451 Msa1128120:intron 60.0%
GGCCTACAGCTGGACCACTC+AGG + chr7_3:79916027-79916046 Msa1128120:CDS 65.0%
GGCCTGAGTGGTCCAGCTGT+AGG - chr7_3:79916032-79916051 None:intergenic 65.0%
CTCGGCAGCCCTCTTCAGTC+TGG - chr7_3:79917611-79917630 None:intergenic 65.0%
CAGACTGAAGAGGGCTGCCG+AGG + chr7_3:79917609-79917628 Msa1128120:CDS 65.0%
GAGGGCTGCCGAGGCAGAGA+AGG + chr7_3:79917618-79917637 Msa1128120:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 79915194 79917971 79915194 ID=Msa1128120;Name=Msa1128120
chr7_3 mRNA 79915194 79917971 79915194 ID=Msa1128120-mRNA-1;Parent=Msa1128120;Name=Msa1128120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=77|1|1|1|0.6|0.33|6|295|207
chr7_3 exon 79915194 79915258 79915194 ID=Msa1128120-mRNA-1:exon:22694;Parent=Msa1128120-mRNA-1
chr7_3 exon 79915760 79915880 79915760 ID=Msa1128120-mRNA-1:exon:22695;Parent=Msa1128120-mRNA-1
chr7_3 exon 79915994 79916127 79915994 ID=Msa1128120-mRNA-1:exon:22696;Parent=Msa1128120-mRNA-1
chr7_3 exon 79917138 79917296 79917138 ID=Msa1128120-mRNA-1:exon:22697;Parent=Msa1128120-mRNA-1
chr7_3 exon 79917433 79917890 79917433 ID=Msa1128120-mRNA-1:exon:22698;Parent=Msa1128120-mRNA-1
chr7_3 exon 79917913 79917971 79917913 ID=Msa1128120-mRNA-1:exon:22699;Parent=Msa1128120-mRNA-1
chr7_3 five_prime_UTR 79915194 79915258 79915194 ID=Msa1128120-mRNA-1:five_prime_utr;Parent=Msa1128120-mRNA-1
chr7_3 five_prime_UTR 79915760 79915771 79915760 ID=Msa1128120-mRNA-1:five_prime_utr;Parent=Msa1128120-mRNA-1
chr7_3 CDS 79915772 79915880 79915772 ID=Msa1128120-mRNA-1:cds;Parent=Msa1128120-mRNA-1
chr7_3 CDS 79915994 79916127 79915994 ID=Msa1128120-mRNA-1:cds;Parent=Msa1128120-mRNA-1
chr7_3 CDS 79917138 79917296 79917138 ID=Msa1128120-mRNA-1:cds;Parent=Msa1128120-mRNA-1
chr7_3 CDS 79917433 79917654 79917433 ID=Msa1128120-mRNA-1:cds;Parent=Msa1128120-mRNA-1
chr7_3 three_prime_UTR 79917655 79917890 79917655 ID=Msa1128120-mRNA-1:three_prime_utr;Parent=Msa1128120-mRNA-1
chr7_3 three_prime_UTR 79917913 79917971 79917913 ID=Msa1128120-mRNA-1:three_prime_utr;Parent=Msa1128120-mRNA-1
Gene Sequence

>Msa1128120

ATGGTGAAGCATAACAATGTTATCCCTAATGAACACTTCCGCAAGCATTGGCAAAACTATGTCAAGACATGGTTTAACCAACCTGCAAGGAAGACGAGAAGACGCTTAGCTCGTCAGAAGAAGGCCGTGAAGATTTTCCCAAGGCCTACAGCTGGACCACTCAGGCCTATTGTTCATGGACAGACTCAGAAATACAACATGAAACTAAGGGCTGGTAAAGGCTTCTCCCTTGAGGAGTTGAAGGCTGCTGGTATTCCCAAAAAGCTTGCTCCAACTATTGGTATTTCTGTCGATCATCGCCGCAAAAACCGATCCTTGGAAGGTCTGCAAGCCAACGTGCAGAGGCTGAAGACATACAAGGCCAAGTTGGTCGTCTTCCCAAGACGTGCACGCAAGGTCAAGGCTGGTGATTCCACTCCTGAGGAACTAGCAAATGCTACACAGGTTCAAGGTTCATACTTACCAATTGTGAGGGAGAAGCCATCTGTAGAGCTTGTTAAGATTACAAATGAAATGAAGGCATTTAAGGCTTATTACAAGCTTCGTCTTGAGCGAACAAACAAACGCCATTTGGGTGCCAGACTGAAGAGGGCTGCCGAGGCAGAGAAGGAAGACAAGAAGTGA

Protein sequence

>Msa1128120

MVKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTQKYNMKLRAGKGFSLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIVREKPSVELVKITNEMKAFKAYYKLRLERTNKRHLGARLKRAAEAEKEDKK*