AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0255090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0255090 MtrunA17_Chr2g0315751 89.225 529 24 6 1 503 1 522 0.0 867
Msa0255090 MtrunA17_Chr2g0315751 83.182 220 30 3 286 504 66 279 4.08e-107 329
Msa0255090 MtrunA17_Chr6g0472321 54.023 87 39 1 392 477 186 272 7.82e-22 97.1
Msa0255090 MtrunA17_Chr6g0472321 47.115 104 51 2 170 272 186 286 1.89e-20 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0255090 AT1G78810.2 32.274 409 211 9 80 486 100 444 1.94e-57 198
Msa0255090 AT1G78810.3 32.274 409 211 9 80 486 100 444 1.94e-57 198
Msa0255090 AT1G78810.1 32.274 409 211 9 80 486 100 444 2.34e-57 198

Find 136 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCATTATCATTGGGTTTA+AGG 0.083244 2_2:+48702037 None:intergenic
GAAAATGTGGAAGAGGTTTA+AGG 0.178260 2_2:-48698358 Msa0255090:CDS
GAAAATGTGGAAGAGGTTTA+AGG 0.178260 2_2:-48699791 Msa0255090:CDS
CATATTTAATCCATTCATTT+TGG 0.178509 2_2:+48697882 None:intergenic
CTGCGGTTTCTGATGCTAAA+TGG 0.188130 2_2:-48700188 Msa0255090:CDS
CATGCTGTTCTTCACAATAT+TGG 0.227270 2_2:-48697844 Msa0255090:three_prime_UTR
AACTATTGTGTTGAAGGATT+TGG 0.247357 2_2:-48698217 Msa0255090:CDS
ATGCTGTTCTTCACAATATT+GGG 0.247733 2_2:-48697843 Msa0255090:three_prime_UTR
CAAAATGAATGGATTAAATA+TGG 0.256022 2_2:-48697881 Msa0255090:three_prime_UTR
TTCAGTTCCATTTGAGCTTC+AGG 0.258938 2_2:-48702016 Msa0255090:CDS
CTTCGGGAGCTAAGAACTTT+TGG 0.271254 2_2:+48698592 None:intergenic
TCGTTCCCCACAAGAGAATA+AGG 0.274444 2_2:+48698666 None:intergenic
AACAGCTTCGAGGGAGCTTT+TGG 0.297071 2_2:-48699617 Msa0255090:intron
AGGAGCTTGTTTGCAGTCTT+AGG 0.301072 2_2:-48697819 Msa0255090:three_prime_UTR
ATCATTATCATTGGGTTTAA+GGG 0.307730 2_2:+48702038 None:intergenic
GACACAAAATAATAGTAAAA+AGG 0.315354 2_2:+48697677 None:intergenic
TAATCCTGTTGATGACAATT+AGG 0.323413 2_2:-48697926 Msa0255090:three_prime_UTR
CATCGGGAGCTAAGAACTTT+TGG 0.328140 2_2:+48700031 None:intergenic
AGCAGCTTCAAGGAAGCTTT+TGG 0.330083 2_2:-48698187 Msa0255090:intron
GGATTATCTTCAACAACTTC+AGG 0.332801 2_2:-48698723 Msa0255090:CDS
TGGAACTGAATCATTATCAT+TGG 0.349423 2_2:+48702029 None:intergenic
TTGGGTCTGAGTTCAGAAAA+TGG 0.351467 2_2:-48701362 Msa0255090:CDS
CCAGATGGTGGATTATCTTC+AGG 0.369017 2_2:-48700153 Msa0255090:CDS
ATGGATTAAATATGGTTTGT+AGG 0.372698 2_2:-48697873 Msa0255090:three_prime_UTR
ATTCGCAGCCGCAGGTTTCT+CGG 0.373500 2_2:+48698068 None:intergenic
GTTACCAGCTATTGTGTTGA+AGG 0.381631 2_2:-48699656 Msa0255090:CDS
TCTTACCCTTATTCTCTTGT+GGG 0.382075 2_2:-48700111 Msa0255090:CDS
GCTTCAACAAACTGTTACTA+AGG 0.384254 2_2:-48701980 Msa0255090:intron
TTCTTACCCTTATTCTCTTG+TGG 0.385665 2_2:-48698673 Msa0255090:CDS
TGTGGTTTCTGATGCTGAAT+GGG 0.387056 2_2:-48698766 Msa0255090:CDS
TCTTACCCTTATTCTCTTGT+GGG 0.389075 2_2:-48698672 Msa0255090:CDS
CTGTGGTTTCTGATGCTGAA+TGG 0.389876 2_2:-48698767 Msa0255090:CDS
TTCTTACCCTTATTCTCTTG+TGG 0.394000 2_2:-48700112 Msa0255090:CDS
TGAAGATGAAGAGGAGGATG+AGG 0.395179 2_2:-48699974 Msa0255090:CDS
GCATGATCCTGAAGCTCAAA+TGG 0.399187 2_2:+48702009 None:intergenic
ATCAGAAACCGCAGATTCAT+TGG 0.399717 2_2:+48700197 None:intergenic
CACGGTGAGATTACTGACTA+TGG 0.401443 2_2:-48697603 Msa0255090:three_prime_UTR
TGCGGTTTCTGATGCTAAAT+GGG 0.405883 2_2:-48700187 Msa0255090:CDS
GTTACCAACTATTGTGTTGA+AGG 0.406576 2_2:-48698223 Msa0255090:CDS
GGAACTGAATCATTATCATT+GGG 0.424784 2_2:+48702030 None:intergenic
ACATCCTAATTGTCATCAAC+AGG 0.429381 2_2:+48697922 None:intergenic
ACTATGAAAGTGATACTTAC+CGG 0.429530 2_2:-48697637 Msa0255090:three_prime_UTR
GATGAAGGTGAAGATGAGTT+TGG 0.438508 2_2:-48698519 Msa0255090:CDS
TGGATTAAATATGGTTTGTA+GGG 0.448341 2_2:-48697872 Msa0255090:three_prime_UTR
GAATTGGTGAGGAAAGTGTT+AGG 0.449273 2_2:+48702248 None:intergenic
TGCTGAAGATGTTGGCTTGA+GGG 0.452073 2_2:-48698445 Msa0255090:CDS
TGGATTCCTCAGCAGCTTCA+AGG 0.456458 2_2:-48698197 Msa0255090:CDS
TTATAGAACAATGCTGATGC+TGG 0.458175 2_2:-48702072 Msa0255090:intron
TCACTGTCAGAACCAACTTC+GGG 0.460153 2_2:+48698576 None:intergenic
GAGAAATGAGAAAGTGAAGC+TGG 0.462206 2_2:+48702296 None:intergenic
CGTCTGTAAAATTGTTGGTT+GGG 0.464214 2_2:-48698256 Msa0255090:CDS
AAATCCTTCAACACAATAGT+TGG 0.467348 2_2:+48698219 None:intergenic
TTCGCAGCCGCAGGTTTCTC+GGG 0.467970 2_2:+48698069 None:intergenic
AGAACATGGTTTGGTGTTGA+AGG 0.472039 2_2:+48698692 None:intergenic
GAAAGTGAAGCCAAAATGAA+TGG 0.473824 2_2:-48697892 Msa0255090:three_prime_UTR
ATCACTGTCAGAACCAACTT+CGG 0.474727 2_2:+48698575 None:intergenic
CGTCTGTAAAGTTGTTGGTT+GGG 0.475945 2_2:-48699689 Msa0255090:CDS
AGAGAGAGTTTGAATTGGTG+AGG 0.482911 2_2:+48702237 None:intergenic
CATGGTTTGGTGTTGAAGGC+CGG 0.483188 2_2:+48698696 None:intergenic
AAATCCTTCAACACAATAGC+TGG 0.483908 2_2:+48699652 None:intergenic
TCAACATCATTCGCAGCCGC+AGG 0.497856 2_2:+48698060 None:intergenic
CTGCTGTACTAAGGACGAAA+AGG 0.499574 2_2:-48698308 Msa0255090:CDS
AAGGATGGTGAGATTCAAGA+TGG 0.504558 2_2:-48701392 Msa0255090:CDS
ATCTCTTAGTAGTTAGTGCA+AGG 0.506103 2_2:+48697788 None:intergenic
CAGATGGTGGATTATCTTCA+GGG 0.506852 2_2:-48700152 Msa0255090:CDS
GTTGAAGATAATCCACCATC+AGG 0.508474 2_2:+48698732 None:intergenic
TCGTCTGTAAAGTTGTTGGT+TGG 0.509226 2_2:-48699690 Msa0255090:CDS
CCTGAAGATAATCCACCATC+TGG 0.511429 2_2:+48700153 None:intergenic
CAAATCGTCTGTAAAGTTGT+TGG 0.511474 2_2:-48699694 Msa0255090:CDS
TTAAGAAGAAAATGTGGAAG+AGG 0.512472 2_2:-48698365 Msa0255090:CDS
TTAAGAAGAAAATGTGGAAG+AGG 0.512472 2_2:-48699798 Msa0255090:CDS
TTCAACAACTTCAGGATGGC+CGG 0.512479 2_2:-48698715 Msa0255090:CDS
CAAGTCGTCTGTAAAATTGT+TGG 0.514580 2_2:-48698261 Msa0255090:CDS
CGAAAAGGATGCGAGCTCAC+AGG 0.516813 2_2:-48699726 Msa0255090:CDS
CTACTGTACTAAGGACGAAA+AGG 0.517368 2_2:-48699741 Msa0255090:CDS
ATTCCTCCTCAACAGCTTCG+AGG 0.517918 2_2:-48699627 Msa0255090:CDS
GAGATTACTGACTATGGTTA+CGG 0.518739 2_2:-48697597 Msa0255090:three_prime_UTR
ATAAGGGTAAGAACATGGTT+TGG 0.519095 2_2:+48698683 None:intergenic
TCGTCTGTAAAATTGTTGGT+TGG 0.521628 2_2:-48698257 Msa0255090:CDS
CGTTCCCCACAAGAGAATAA+GGG 0.522813 2_2:+48698667 None:intergenic
AGCATTCAACTGCTGTACTA+AGG 0.523950 2_2:-48698317 Msa0255090:CDS
TTCCTCCTCAACAGCTTCGA+GGG 0.527626 2_2:-48699626 Msa0255090:CDS
TTTCGTCCTTAGTACAGTAG+TGG 0.528949 2_2:+48699744 None:intergenic
CGAAAAGGAAGCGAGCTCAC+AGG 0.538714 2_2:-48698293 Msa0255090:CDS
AAGTTCTTAGCTCCCGAAGT+TGG 0.540001 2_2:-48698588 Msa0255090:CDS
AGCATTCCACTACTGTACTA+AGG 0.540686 2_2:-48699750 Msa0255090:CDS
GAAGATGAGGATGAGGATGA+AGG 0.542015 2_2:-48698534 Msa0255090:CDS
GGATGAAAGTGAAGATGAGT+TGG 0.543518 2_2:-48699953 Msa0255090:CDS
CTTACCCTTATTCTCTTGTG+GGG 0.545295 2_2:-48700110 Msa0255090:CDS
AAGCTCCCTCGAAGCTGTTG+AGG 0.545942 2_2:+48699621 None:intergenic
GAAAAGGATGCGAGCTCACA+GGG 0.552039 2_2:-48699725 Msa0255090:CDS
TTACCCTTATTCTCTTGTGG+GGG 0.552408 2_2:-48700109 Msa0255090:CDS
TCGCTGTCAGAACCAACATC+GGG 0.556636 2_2:+48700015 None:intergenic
CTTACCCTTATTCTCTTGTG+GGG 0.563903 2_2:-48698671 Msa0255090:CDS
TCAACATCACTCGCAGCAGC+AGG 0.565239 2_2:+48699490 None:intergenic
GAAAAGGAAGCGAGCTCACA+GGG 0.567524 2_2:-48698292 Msa0255090:CDS
TGAAGATGAAGATGAAGAGG+AGG 0.567889 2_2:-48699980 Msa0255090:CDS
AAGCTTCCTTGAAGCTGCTG+AGG 0.568779 2_2:+48698191 None:intergenic
TGAAGATGAAGATGAGGATG+AGG 0.569285 2_2:-48698541 Msa0255090:CDS
TATTGAAGATGAAGATGAAG+AGG 0.569364 2_2:-48699983 Msa0255090:CDS
ATCGCTGTCAGAACCAACAT+CGG 0.576903 2_2:+48700014 None:intergenic
ACGATGCTTAAAATTGCAAG+TGG 0.588629 2_2:-48697721 Msa0255090:three_prime_UTR
CTCCCTCGAAGCTGTTGAGG+AGG 0.593342 2_2:+48699624 None:intergenic
AAGTTCTTAGCTCCCGATGT+TGG 0.594788 2_2:-48700027 Msa0255090:CDS
AAAGTGTTCGCTGAAGATGC+TGG 0.595637 2_2:-48699886 Msa0255090:CDS
TCACCGTGTCGCATTCCCAC+CGG 0.597259 2_2:+48697618 None:intergenic
TCTCTTAGTAGTTAGTGCAA+GGG 0.598520 2_2:+48697789 None:intergenic
TTGCTGAAGATGTTGGCTTG+AGG 0.599340 2_2:-48698446 Msa0255090:CDS
TGGGTTTGCAAAAGTCCAGA+TGG 0.610274 2_2:-48700168 Msa0255090:CDS
TGCTGTTCTTCACAATATTG+GGG 0.611985 2_2:-48697842 Msa0255090:three_prime_UTR
TCGCTGAAGATGCTGGCTTG+AGG 0.620018 2_2:-48699879 Msa0255090:CDS
GTAGGTAACTCATGAATCTG+TGG 0.623545 2_2:-48698784 Msa0255090:intron
TTATTCTCTTGTGGGGAACG+AGG 0.629352 2_2:-48698664 Msa0255090:CDS
GTGGTGTTAAGAAGAAAATG+TGG 0.629707 2_2:-48698371 Msa0255090:CDS
GTGGTGTTAAGAAGAAAATG+TGG 0.629707 2_2:-48699804 Msa0255090:CDS
AATATTGTGAAGAACAGCAT+GGG 0.639718 2_2:+48697846 None:intergenic
CAATATTGTGAAGAACAGCA+TGG 0.642297 2_2:+48697845 None:intergenic
TACGAGAACAATAGTAAACA+AGG 0.643032 2_2:-48699850 Msa0255090:CDS
AAAGTGTTTGCTGAAGATGT+TGG 0.647008 2_2:-48698453 Msa0255090:CDS
GTTTGCAAAAGTCCAGATGG+TGG 0.648430 2_2:-48700165 Msa0255090:CDS
GATTACTGAATCATCATCTG+AGG 0.648513 2_2:-48702199 Msa0255090:intron
TATCTTCAACAACTTCAGGA+TGG 0.648539 2_2:-48698719 Msa0255090:CDS
AAATGGAAGAGAATTAGTTG+AGG 0.648698 2_2:-48701345 Msa0255090:intron
TGGGTTTGCAAAAGTCCTGA+TGG 0.652543 2_2:-48698747 Msa0255090:CDS
TTACCGGTGGGAATGCGACA+CGG 0.653909 2_2:-48697621 Msa0255090:three_prime_UTR
TGTTATTGAAGATGAAGATG+AGG 0.654393 2_2:-48698547 Msa0255090:CDS
ATGAAAGTGATACTTACCGG+TGG 0.655296 2_2:-48697634 Msa0255090:three_prime_UTR
AGAGAATAAGGGTAAGAACA+TGG 0.658460 2_2:+48698678 None:intergenic
AGAGAATAAGGGTAAGAACA+TGG 0.658460 2_2:+48700117 None:intergenic
TGTTCTTCACAATATTGGGG+AGG 0.661417 2_2:-48697839 Msa0255090:three_prime_UTR
GTAGGTAACCAATGAATCTG+CGG 0.663446 2_2:-48700205 Msa0255090:intron
TGAAAGTGATACTTACCGGT+GGG 0.664186 2_2:-48697633 Msa0255090:three_prime_UTR
GGCTGAACCCGAGAAACCTG+CGG 0.683846 2_2:-48698076 Msa0255090:CDS
GTTTGCAAAAGTCCTGATGG+TGG 0.690415 2_2:-48698744 Msa0255090:CDS
AGTTGGTTCTGACAGTGATG+AGG 0.694565 2_2:-48698571 Msa0255090:CDS
ATGGTGGATTATCTTCAGGG+TGG 0.726118 2_2:-48700149 Msa0255090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAGTTTTTTTTTTTTAATC+CGG + chr2_2:48698348-48698367 None:intergenic 10.0%
!! TTTACAAAATAGTAATTATT+TGG - chr2_2:48699158-48699177 Msa0255090:intron 10.0%
!! TTACAAAATAGTAATTATTT+GGG - chr2_2:48699159-48699178 Msa0255090:intron 10.0%
!! AATAAAAATTTAAATTGACA+AGG + chr2_2:48700474-48700493 None:intergenic 10.0%
!!! ATAAATAATTGATTTGAGTT+TGG - chr2_2:48698046-48698065 Msa0255090:intron 15.0%
!!! TCATTTTCGTAAATTATTAT+AGG - chr2_2:48698149-48698168 Msa0255090:intron 15.0%
!! TAGATTAAAATAGTGAAAAT+CGG - chr2_2:48698224-48698243 Msa0255090:CDS 15.0%
!!! AATTTGAAAAATGGATTAAT+TGG - chr2_2:48698718-48698737 Msa0255090:CDS 15.0%
!! TTTAAATAAATAGAGAAGTT+AGG - chr2_2:48699132-48699151 Msa0255090:intron 15.0%
!!! ACTATTTTCACATATTTTTT+TGG - chr2_2:48699467-48699486 Msa0255090:intron 15.0%
!!! TTTTAATGGAATTTTAATGT+AGG - chr2_2:48699638-48699657 Msa0255090:CDS 15.0%
!! AAGTGAATAAAGTTTGATTA+AGG + chr2_2:48697718-48697737 None:intergenic 20.0%
!! AGTTAAAATCATATGAAACA+AGG + chr2_2:48697769-48697788 None:intergenic 20.0%
!!! TCATAATCACTTTTATTGAT+GGG + chr2_2:48698025-48698044 None:intergenic 20.0%
!!! TTCATAATCACTTTTATTGA+TGG + chr2_2:48698026-48698045 None:intergenic 20.0%
!!! TCCATTTTTCAAATTTTTAC+CGG + chr2_2:48698713-48698732 None:intergenic 20.0%
!!! AAATAGTAATTATTTGGGAT+CGG - chr2_2:48699164-48699183 Msa0255090:intron 20.0%
!! TAAATGTTAGTATTGTTAGT+AGG - chr2_2:48699504-48699523 Msa0255090:CDS 20.0%
!! AAATGTTAGTATTGTTAGTA+GGG - chr2_2:48699505-48699524 Msa0255090:CDS 20.0%
!!! TTCTGAATTCTGTTTTTTAA+TGG - chr2_2:48699624-48699643 Msa0255090:CDS 20.0%
!! AGTATATGATACTTACATTT+CGG + chr2_2:48700400-48700419 None:intergenic 20.0%
!!! TAATCTCTTATTATTTTCTC+TGG - chr2_2:48700445-48700464 Msa0255090:intron 20.0%
!! ATTCCAATTTGCAAAAAAAT+TGG + chr2_2:48700794-48700813 None:intergenic 20.0%
!! TACTAATGAAATATCAATGT+AGG - chr2_2:48701059-48701078 Msa0255090:intron 20.0%
!!! AAAAGGAGATTTTTATTGTT+TGG - chr2_2:48701461-48701480 Msa0255090:intron 20.0%
!! CAACATAATTAGCAATAATA+AGG + chr2_2:48701751-48701770 None:intergenic 20.0%
!!! CATATTTAATCCATTCATTT+TGG + chr2_2:48701982-48702001 None:intergenic 20.0%
!!! CAAAATGAATGGATTAAATA+TGG - chr2_2:48701980-48701999 Msa0255090:intron 20.0%
!! ATAATAGTAAAAAGGAACAT+GGG + chr2_2:48702179-48702198 None:intergenic 20.0%
!! AATAATAGTAAAAAGGAACA+TGG + chr2_2:48702180-48702199 None:intergenic 20.0%
!! GACACAAAATAATAGTAAAA+AGG + chr2_2:48702187-48702206 None:intergenic 20.0%
!!! TTTTACTATTATTTTGTGTC+TGG - chr2_2:48702187-48702206 Msa0255090:intron 20.0%
! ATCATTATCATTGGGTTTAA+GGG + chr2_2:48697826-48697845 None:intergenic 25.0%
! AATCATTATCATTGGGTTTA+AGG + chr2_2:48697827-48697846 None:intergenic 25.0%
! ATTCAAGATGGAAAAACATT+GGG - chr2_2:48698481-48698500 Msa0255090:CDS 25.0%
! TTAGTTGAGGTAAAACAATT+TGG - chr2_2:48698529-48698548 Msa0255090:CDS 25.0%
! ACCGGTAAAAATTTGAAAAA+TGG - chr2_2:48698709-48698728 Msa0255090:CDS 25.0%
!! ATGTAAGACATTTCATTTTC+TGG - chr2_2:48698917-48698936 Msa0255090:intron 25.0%
!! TCTATGATTTGGAAAATCAA+GGG + chr2_2:48699366-48699385 None:intergenic 25.0%
!! ATCTATGATTTGGAAAATCA+AGG + chr2_2:48699367-48699386 None:intergenic 25.0%
! ATCACATTCATGACTATTAT+TGG - chr2_2:48699397-48699416 Msa0255090:intron 25.0%
!!! TTTTTTTGGAACGAGTAAAA+AGG - chr2_2:48699481-48699500 Msa0255090:CDS 25.0%
!! ACAAGGAGATTTTTATTGTT+TGG - chr2_2:48700028-48700047 Msa0255090:CDS 25.0%
!!! GATTTTTATTGTTTGGTTTG+TGG - chr2_2:48700035-48700054 Msa0255090:CDS 25.0%
! CAATCTAATAAGCAAAAATG+AGG + chr2_2:48700321-48700340 None:intergenic 25.0%
!!! TAGATTGTATTGATTTTTGC+AGG - chr2_2:48700334-48700353 Msa0255090:intron 25.0%
! TATTATATGTGCATGTTTCT+TGG - chr2_2:48700490-48700509 Msa0255090:intron 25.0%
! ACTGAATTATCTGTATTGTA+TGG - chr2_2:48700586-48700605 Msa0255090:intron 25.0%
! TAGAATTAACCAGAAAATGA+AGG + chr2_2:48700634-48700653 None:intergenic 25.0%
!!! ACTCCAATTTTTTTGCAAAT+TGG - chr2_2:48700788-48700807 Msa0255090:intron 25.0%
! AAAACATCAAAGAGAATCAT+GGG + chr2_2:48701030-48701049 None:intergenic 25.0%
! TAAAACATCAAAGAGAATCA+TGG + chr2_2:48701031-48701050 None:intergenic 25.0%
! TACGAGAACAATAGTAAAAA+AGG - chr2_2:48701444-48701463 Msa0255090:intron 25.0%
!!! GATTTTTATTGTTTGGTTTG+TGG - chr2_2:48700035-48700054 Msa0255090:CDS 25.0%
! ATTGTATGTCAGATGTAATT+TGG - chr2_2:48701855-48701874 Msa0255090:intron 25.0%
!! ATGGATTAAATATGGTTTGT+AGG - chr2_2:48701988-48702007 Msa0255090:CDS 25.0%
!! TGGATTAAATATGGTTTGTA+GGG - chr2_2:48701989-48702008 Msa0255090:CDS 25.0%
! TAATAGTAAAAAGGAACATG+GGG + chr2_2:48702178-48702197 None:intergenic 25.0%
GGAACTGAATCATTATCATT+GGG + chr2_2:48697834-48697853 None:intergenic 30.0%
TGGAACTGAATCATTATCAT+TGG + chr2_2:48697835-48697854 None:intergenic 30.0%
! AGTTTCACTTTACCCTTTTA+TGG - chr2_2:48697947-48697966 Msa0255090:intron 30.0%
! GTTTCACTTTACCCTTTTAT+GGG - chr2_2:48697948-48697967 Msa0255090:intron 30.0%
! TACCCTTTTATGGGTTTAAA+TGG - chr2_2:48697957-48697976 Msa0255090:intron 30.0%
! ACCCTTTTATGGGTTTAAAT+GGG - chr2_2:48697958-48697977 Msa0255090:intron 30.0%
ACCCATTTAAACCCATAAAA+GGG + chr2_2:48697962-48697981 None:intergenic 30.0%
AACCCATTTAAACCCATAAA+AGG + chr2_2:48697963-48697982 None:intergenic 30.0%
TTACAAAAGCTCAAAGAAAC+CGG - chr2_2:48698326-48698345 Msa0255090:CDS 30.0%
GATTCAAGATGGAAAAACAT+TGG - chr2_2:48698480-48698499 Msa0255090:CDS 30.0%
AAATGGAAGAGAATTAGTTG+AGG - chr2_2:48698516-48698535 Msa0255090:CDS 30.0%
!!! GTAATCACATGTTTTGATGT+CGG - chr2_2:48698743-48698762 Msa0255090:CDS 30.0%
TCAATTAAATTGACACTAGC+AGG + chr2_2:48699015-48699034 None:intergenic 30.0%
! TGTATCCCTTTTATTCTGTT+AGG - chr2_2:48699038-48699057 Msa0255090:intron 30.0%
AGAGACCTAACAGAATAAAA+GGG + chr2_2:48699046-48699065 None:intergenic 30.0%
AAGAGACCTAACAGAATAAA+AGG + chr2_2:48699047-48699066 None:intergenic 30.0%
GAAAACGATTCACAAAACAA+AGG + chr2_2:48699314-48699333 None:intergenic 30.0%
TGAATCATCTCTGATAATCA+GGG + chr2_2:48699603-48699622 None:intergenic 30.0%
TATTGAAGATGAAGATGAAG+AGG - chr2_2:48699878-48699897 Msa0255090:CDS 30.0%
TACGAGAACAATAGTAAACA+AGG - chr2_2:48700011-48700030 Msa0255090:CDS 30.0%
!!! TTTTATTGTTTGGTTTGTGG+TGG - chr2_2:48700038-48700057 Msa0255090:CDS 30.0%
TTAAGAAGAAAATGTGGAAG+AGG - chr2_2:48700063-48700082 Msa0255090:CDS 30.0%
! ATGTAAGATCCTTCATTTTC+TGG - chr2_2:48700622-48700641 Msa0255090:intron 30.0%
AAGTGTTATCTCTTCATTCA+TGG - chr2_2:48700734-48700753 Msa0255090:intron 30.0%
TCTTCATTCATGGCTATTAT+TGG - chr2_2:48700744-48700763 Msa0255090:intron 30.0%
CAATACATACTACTATTCCT+CGG + chr2_2:48700819-48700838 None:intergenic 30.0%
GGAATAGTAGTATGTATTGT+TGG - chr2_2:48700820-48700839 Msa0255090:intron 30.0%
TAGTAACTTAGTGTTATGTC+AGG - chr2_2:48700919-48700938 Msa0255090:intron 30.0%
AGTTAAAGAGTGAAGTGATA+AGG + chr2_2:48700976-48700995 None:intergenic 30.0%
AAGAGAATCATGGGATATAA+GGG + chr2_2:48701021-48701040 None:intergenic 30.0%
AAAGAGAATCATGGGATATA+AGG + chr2_2:48701022-48701041 None:intergenic 30.0%
TGTTATTGAAGATGAAGATG+AGG - chr2_2:48699875-48699894 Msa0255090:CDS 30.0%
!!! TTTTATTGTTTGGTTTGTGG+TGG - chr2_2:48700038-48700057 Msa0255090:CDS 30.0%
TTAAGAAGAAAATGTGGAAG+AGG - chr2_2:48700063-48700082 Msa0255090:CDS 30.0%
AAATCCTTCAACACAATAGT+TGG + chr2_2:48701645-48701664 None:intergenic 30.0%
AACTATTGTGTTGAAGGATT+TGG - chr2_2:48701644-48701663 Msa0255090:intron 30.0%
!! TAATCCTGTTGATGACAATT+AGG - chr2_2:48701935-48701954 Msa0255090:intron 30.0%
AATATTGTGAAGAACAGCAT+GGG + chr2_2:48702018-48702037 None:intergenic 30.0%
ATGCTGTTCTTCACAATATT+GGG - chr2_2:48702018-48702037 Msa0255090:CDS 30.0%
ACTATGAAAGTGATACTTAC+CGG - chr2_2:48702224-48702243 Msa0255090:exon 30.0%
GATTACTGAATCATCATCTG+AGG - chr2_2:48697662-48697681 Msa0255090:three_prime_UTR 35.0%
TTATAGAACAATGCTGATGC+TGG - chr2_2:48697789-48697808 Msa0255090:three_prime_UTR 35.0%
GCTTCAACAAACTGTTACTA+AGG - chr2_2:48697881-48697900 Msa0255090:three_prime_UTR 35.0%
!! TGGGTTCATGTATTTTTGCT+TGG - chr2_2:48697977-48697996 Msa0255090:intron 35.0%
GAGTTTGGTTATACTCTTTG+TGG - chr2_2:48698061-48698080 Msa0255090:CDS 35.0%
! TCTATTGATTGTTGTGTCTG+CGG - chr2_2:48698437-48698456 Msa0255090:CDS 35.0%
!! GCTGAAAAGAAAAGCATCAA+GGG + chr2_2:48698840-48698859 None:intergenic 35.0%
!! AGCTGAAAAGAAAAGCATCA+AGG + chr2_2:48698841-48698860 None:intergenic 35.0%
! GTGTGTCTGATTGATAATCT+AGG - chr2_2:48698890-48698909 Msa0255090:intron 35.0%
AGTTTCCAGATATACAGAAC+CGG - chr2_2:48698981-48699000 Msa0255090:intron 35.0%
! TTTGGGATCGGATATTGATT+TGG - chr2_2:48699176-48699195 Msa0255090:intron 35.0%
GATCAAGCTCTTGAAAATCT+TGG - chr2_2:48699202-48699221 Msa0255090:intron 35.0%
AAGCTCTTGAAAATCTTGGT+GGG - chr2_2:48699206-48699225 Msa0255090:intron 35.0%
! TTTTGTGAATCGTTTTCCAG+AGG - chr2_2:48699317-48699336 Msa0255090:intron 35.0%
CAGAATTTATTTCCAACCTC+TGG + chr2_2:48699336-48699355 None:intergenic 35.0%
AGAAACTGGCATCTATGATT+TGG + chr2_2:48699377-48699396 None:intergenic 35.0%
GTCATGAATGTGATAGAAAC+TGG + chr2_2:48699391-48699410 None:intergenic 35.0%
AGTTAAGAAGTGGAGTGATA+AGG + chr2_2:48699547-48699566 None:intergenic 35.0%
GAATCATCTCTGATAATCAG+GGG + chr2_2:48699602-48699621 None:intergenic 35.0%
GTGAATCATCTCTGATAATC+AGG + chr2_2:48699604-48699623 None:intergenic 35.0%
AGAGAATAAGGGTAAGAACA+TGG + chr2_2:48699747-48699766 None:intergenic 35.0%
TTCTTACCCTTATTCTCTTG+TGG - chr2_2:48699749-48699768 Msa0255090:CDS 35.0%
TCTTACCCTTATTCTCTTGT+GGG - chr2_2:48699750-48699769 Msa0255090:CDS 35.0%
! GTGGTGTTAAGAAGAAAATG+TGG - chr2_2:48700057-48700076 Msa0255090:CDS 35.0%
GAAAATGTGGAAGAGGTTTA+AGG - chr2_2:48700070-48700089 Msa0255090:CDS 35.0%
CAAATCGTCTGTAAAGTTGT+TGG - chr2_2:48700167-48700186 Msa0255090:CDS 35.0%
AAATCCTTCAACACAATAGC+TGG + chr2_2:48700212-48700231 None:intergenic 35.0%
ATATGTGCATGTTTCTTGGT+TGG - chr2_2:48700494-48700513 Msa0255090:intron 35.0%
TCTGTATTGTATGGTAGTCT+AGG - chr2_2:48700595-48700614 Msa0255090:intron 35.0%
AGAAATAGTTACGAGATGCA+CGG - chr2_2:48700675-48700694 Msa0255090:intron 35.0%
TCAATTCAATTGACACTAGC+AGG + chr2_2:48700715-48700734 None:intergenic 35.0%
ACTTAGTGTTATGTCAGGAA+TGG - chr2_2:48700924-48700943 Msa0255090:intron 35.0%
CTTAGTGTTATGTCAGGAAT+GGG - chr2_2:48700925-48700944 Msa0255090:intron 35.0%
TTAGTGTTATGTCAGGAATG+GGG - chr2_2:48700926-48700945 Msa0255090:intron 35.0%
TAAAGAGTGAAGTGATAAGG+TGG + chr2_2:48700973-48700992 None:intergenic 35.0%
GGATTATCTTCAACAACTTC+AGG - chr2_2:48701138-48701157 Msa0255090:intron 35.0%
TATCTTCAACAACTTCAGGA+TGG - chr2_2:48701142-48701161 Msa0255090:intron 35.0%
ATAAGGGTAAGAACATGGTT+TGG + chr2_2:48699742-48699761 None:intergenic 35.0%
AGAGAATAAGGGTAAGAACA+TGG + chr2_2:48699747-48699766 None:intergenic 35.0%
TTCTTACCCTTATTCTCTTG+TGG - chr2_2:48699749-48699768 Msa0255090:CDS 35.0%
TCTTACCCTTATTCTCTTGT+GGG - chr2_2:48699750-48699769 Msa0255090:CDS 35.0%
! AAAGTGTTTGCTGAAGATGT+TGG - chr2_2:48701408-48701427 Msa0255090:intron 35.0%
! GTGGTGTTAAGAAGAAAATG+TGG - chr2_2:48700057-48700076 Msa0255090:CDS 35.0%
GAAAATGTGGAAGAGGTTTA+AGG - chr2_2:48700070-48700089 Msa0255090:CDS 35.0%
CAAGTCGTCTGTAAAATTGT+TGG - chr2_2:48701600-48701619 Msa0255090:intron 35.0%
TCGTCTGTAAAATTGTTGGT+TGG - chr2_2:48701604-48701623 Msa0255090:intron 35.0%
! CGTCTGTAAAATTGTTGGTT+GGG - chr2_2:48701605-48701624 Msa0255090:intron 35.0%
GTTACCAACTATTGTGTTGA+AGG - chr2_2:48701638-48701657 Msa0255090:intron 35.0%
!!! TATGTTGCGTTGATTTTCAC+AGG - chr2_2:48701764-48701783 Msa0255090:intron 35.0%
!! ATATACTGCTGTGTTTTTGC+AGG - chr2_2:48701902-48701921 Msa0255090:intron 35.0%
!! TATACTGCTGTGTTTTTGCA+GGG - chr2_2:48701903-48701922 Msa0255090:intron 35.0%
ACATCCTAATTGTCATCAAC+AGG + chr2_2:48701942-48701961 None:intergenic 35.0%
GAAAGTGAAGCCAAAATGAA+TGG - chr2_2:48701969-48701988 Msa0255090:intron 35.0%
CAATATTGTGAAGAACAGCA+TGG + chr2_2:48702019-48702038 None:intergenic 35.0%
CATGCTGTTCTTCACAATAT+TGG - chr2_2:48702017-48702036 Msa0255090:CDS 35.0%
TGCTGTTCTTCACAATATTG+GGG - chr2_2:48702019-48702038 Msa0255090:CDS 35.0%
TCTCTTAGTAGTTAGTGCAA+GGG + chr2_2:48702075-48702094 None:intergenic 35.0%
ATCTCTTAGTAGTTAGTGCA+AGG + chr2_2:48702076-48702095 None:intergenic 35.0%
!!! GCATCGTATTTTGAGATTCA+TGG + chr2_2:48702127-48702146 None:intergenic 35.0%
ACGATGCTTAAAATTGCAAG+TGG - chr2_2:48702140-48702159 Msa0255090:intron 35.0%
! GAGATTACTGACTATGGTTA+CGG - chr2_2:48702264-48702283 Msa0255090:five_prime_UTR 35.0%
!!! GAAGCTGGTTTTGTGGATTT+GGG + chr2_2:48697553-48697572 None:intergenic 40.0%
!!! TGAAGCTGGTTTTGTGGATT+TGG + chr2_2:48697554-48697573 None:intergenic 40.0%
!!! AGAAAGTGAAGCTGGTTTTG+TGG + chr2_2:48697560-48697579 None:intergenic 40.0%
GAGAAATGAGAAAGTGAAGC+TGG + chr2_2:48697568-48697587 None:intergenic 40.0%
!! GAATTGGTGAGGAAAGTGTT+AGG + chr2_2:48697616-48697635 None:intergenic 40.0%
AGAGAGAGTTTGAATTGGTG+AGG + chr2_2:48697627-48697646 None:intergenic 40.0%
GAGAGAGAGAGAGTTTGAAT+TGG + chr2_2:48697632-48697651 None:intergenic 40.0%
TTCAGTTCCATTTGAGCTTC+AGG - chr2_2:48697845-48697864 Msa0255090:three_prime_UTR 40.0%
!! GTGCTTTTAACCAGAAGTGT+CGG + chr2_2:48698089-48698108 None:intergenic 40.0%
TCAGTGTTGTATCTTGTGTC+TGG - chr2_2:48698182-48698201 Msa0255090:intron 40.0%
TTGTATCTTGTGTCTGGTGT+TGG - chr2_2:48698188-48698207 Msa0255090:CDS 40.0%
GTGTCTGCGGAATTATTTGA+AGG - chr2_2:48698450-48698469 Msa0255090:CDS 40.0%
CTGCGGAATTATTTGAAGGA+TGG - chr2_2:48698454-48698473 Msa0255090:CDS 40.0%
AAGGATGGTGAGATTCAAGA+TGG - chr2_2:48698469-48698488 Msa0255090:CDS 40.0%
TTGGGTCTGAGTTCAGAAAA+TGG - chr2_2:48698499-48698518 Msa0255090:CDS 40.0%
!!! ACATGTTTTGATGTCGGTGT+TGG - chr2_2:48698749-48698768 Msa0255090:CDS 40.0%
!! AAAGAAAAGCATCAAGGGAG+TGG + chr2_2:48698835-48698854 None:intergenic 40.0%
ACAATCCGGTTCTGTATATC+TGG + chr2_2:48698989-48699008 None:intergenic 40.0%
ACACTAGCAGGATAACAATC+CGG + chr2_2:48699003-48699022 None:intergenic 40.0%
!! TAACCGACTCACACACTTTT+GGG + chr2_2:48699094-48699113 None:intergenic 40.0%
!! ATAACCGACTCACACACTTT+TGG + chr2_2:48699095-48699114 None:intergenic 40.0%
CAAGCTCTTGAAAATCTTGG+TGG - chr2_2:48699205-48699224 Msa0255090:intron 40.0%
ATGACTATTATTGGTACGCG+AGG - chr2_2:48699406-48699425 Msa0255090:intron 40.0%
CTGATAATCAGGGGACAAAA+GGG + chr2_2:48699593-48699612 None:intergenic 40.0%
TCTGATAATCAGGGGACAAA+AGG + chr2_2:48699594-48699613 None:intergenic 40.0%
GTAGGTAACCAATGAATCTG+CGG - chr2_2:48699656-48699675 Msa0255090:CDS 40.0%
ATCAGAAACCGCAGATTCAT+TGG + chr2_2:48699667-48699686 None:intergenic 40.0%
TGCGGTTTCTGATGCTAAAT+GGG - chr2_2:48699674-48699693 Msa0255090:CDS 40.0%
!! CAGATGGTGGATTATCTTCA+GGG - chr2_2:48699709-48699728 Msa0255090:CDS 40.0%
CTTACCCTTATTCTCTTGTG+GGG - chr2_2:48699751-48699770 Msa0255090:CDS 40.0%
TTACCCTTATTCTCTTGTGG+GGG - chr2_2:48699752-48699771 Msa0255090:CDS 40.0%
TGAAGATGAAGATGAAGAGG+AGG - chr2_2:48699881-48699900 Msa0255090:CDS 40.0%
GGATGAAAGTGAAGATGAGT+TGG - chr2_2:48699908-48699927 Msa0255090:CDS 40.0%
AGCATTCCACTACTGTACTA+AGG - chr2_2:48700111-48700130 Msa0255090:CDS 40.0%
TTTCGTCCTTAGTACAGTAG+TGG + chr2_2:48700120-48700139 None:intergenic 40.0%
CTACTGTACTAAGGACGAAA+AGG - chr2_2:48700120-48700139 Msa0255090:CDS 40.0%
TCGTCTGTAAAGTTGTTGGT+TGG - chr2_2:48700171-48700190 Msa0255090:CDS 40.0%
! CGTCTGTAAAGTTGTTGGTT+GGG - chr2_2:48700172-48700191 Msa0255090:CDS 40.0%
GTTACCAGCTATTGTGTTGA+AGG - chr2_2:48700205-48700224 Msa0255090:intron 40.0%
!! TGATTTTTGCAGGTTGAACC+CGG - chr2_2:48700344-48700363 Msa0255090:intron 40.0%
!! TGACAAGAAAAGCATCAAGG+CGG + chr2_2:48700546-48700565 None:intergenic 40.0%
!! AGCTGACAAGAAAAGCATCA+AGG + chr2_2:48700549-48700568 None:intergenic 40.0%
TTTGCAAATTGGAATTGCCG+AGG - chr2_2:48700799-48700818 Msa0255090:intron 40.0%
! GTATGCTAGCTTAGAAGTCT+CGG - chr2_2:48700848-48700867 Msa0255090:intron 40.0%
ATAAGGGTGACATTGTGGTT+AGG + chr2_2:48701005-48701024 None:intergenic 40.0%
GTAGGTAACTCATGAATCTG+TGG - chr2_2:48701077-48701096 Msa0255090:intron 40.0%
TGTGGTTTCTGATGCTGAAT+GGG - chr2_2:48701095-48701114 Msa0255090:intron 40.0%
GTTGAAGATAATCCACCATC+AGG + chr2_2:48701132-48701151 None:intergenic 40.0%
!! AGAACATGGTTTGGTGTTGA+AGG + chr2_2:48701172-48701191 None:intergenic 40.0%
CTTACCCTTATTCTCTTGTG+GGG - chr2_2:48699751-48699770 Msa0255090:CDS 40.0%
ATCACTGTCAGAACCAACTT+CGG + chr2_2:48701289-48701308 None:intergenic 40.0%
TGAAGATGAAGATGAGGATG+AGG - chr2_2:48701320-48701339 Msa0255090:intron 40.0%
GATGAAGGTGAAGATGAGTT+TGG - chr2_2:48701342-48701361 Msa0255090:intron 40.0%
AGCATTCAACTGCTGTACTA+AGG - chr2_2:48701544-48701563 Msa0255090:intron 40.0%
TGTTCTTCACAATATTGGGG+AGG - chr2_2:48702022-48702041 Msa0255090:CDS 40.0%
ATGAAAGTGATACTTACCGG+TGG - chr2_2:48702227-48702246 Msa0255090:five_prime_UTR 40.0%
TGAAAGTGATACTTACCGGT+GGG - chr2_2:48702228-48702247 Msa0255090:five_prime_UTR 40.0%
GCATGATCCTGAAGCTCAAA+TGG + chr2_2:48697855-48697874 None:intergenic 45.0%
!! CTACCTATGAAGCACTGACA+CGG - chr2_2:48698658-48698677 Msa0255090:CDS 45.0%
!! CGTGTTTGGTGTATACGTGT+TGG + chr2_2:48698778-48698797 None:intergenic 45.0%
!! CTTTTGATGGTAGGCGTGTT+TGG + chr2_2:48698792-48698811 None:intergenic 45.0%
! ACGCCTACCATCAAAAGTGT+CGG - chr2_2:48698795-48698814 Msa0255090:intron 45.0%
!!! TGTAGCACCGACACTTTTGA+TGG + chr2_2:48698805-48698824 None:intergenic 45.0%
! AGACCCAAAAGTGTGTGAGT+CGG - chr2_2:48699088-48699107 Msa0255090:intron 45.0%
! GTGAATCGTTTTCCAGAGGT+TGG - chr2_2:48699321-48699340 Msa0255090:intron 45.0%
ATAATCAGGGGACAAAAGGG+TGG + chr2_2:48699590-48699609 None:intergenic 45.0%
CTGCGGTTTCTGATGCTAAA+TGG - chr2_2:48699673-48699692 Msa0255090:CDS 45.0%
TGGGTTTGCAAAAGTCCAGA+TGG - chr2_2:48699693-48699712 Msa0255090:CDS 45.0%
GTTTGCAAAAGTCCAGATGG+TGG - chr2_2:48699696-48699715 Msa0255090:CDS 45.0%
CCTGAAGATAATCCACCATC+TGG + chr2_2:48699711-48699730 None:intergenic 45.0%
!! CCAGATGGTGGATTATCTTC+AGG - chr2_2:48699708-48699727 Msa0255090:CDS 45.0%
!! ATGGTGGATTATCTTCAGGG+TGG - chr2_2:48699712-48699731 Msa0255090:CDS 45.0%
CATCCCCCACAAGAGAATAA+GGG + chr2_2:48699758-48699777 None:intergenic 45.0%
TCATCCCCCACAAGAGAATA+AGG + chr2_2:48699759-48699778 None:intergenic 45.0%
TTATTCTCTTGTGGGGGATG+AGG - chr2_2:48699758-48699777 Msa0255090:CDS 45.0%
! CATCGGGAGCTAAGAACTTT+TGG + chr2_2:48699833-48699852 None:intergenic 45.0%
AAGTTCTTAGCTCCCGATGT+TGG - chr2_2:48699834-48699853 Msa0255090:CDS 45.0%
ATCGCTGTCAGAACCAACAT+CGG + chr2_2:48699850-48699869 None:intergenic 45.0%
TGAAGATGAAGAGGAGGATG+AGG - chr2_2:48699887-48699906 Msa0255090:CDS 45.0%
! AAAGTGTTCGCTGAAGATGC+TGG - chr2_2:48699975-48699994 Msa0255090:CDS 45.0%
TTATGTCAGGAATGGGGAAC+TGG - chr2_2:48700932-48700951 Msa0255090:intron 45.0%
TATGTCAGGAATGGGGAACT+GGG - chr2_2:48700933-48700952 Msa0255090:intron 45.0%
TGAAGTGATAAGGTGGTCGA+GGG + chr2_2:48700966-48700985 None:intergenic 45.0%
GGGATATAAGGGTGACATTG+TGG + chr2_2:48701010-48701029 None:intergenic 45.0%
CTGTGGTTTCTGATGCTGAA+TGG - chr2_2:48701094-48701113 Msa0255090:intron 45.0%
TGGGTTTGCAAAAGTCCTGA+TGG - chr2_2:48701114-48701133 Msa0255090:intron 45.0%
GTTTGCAAAAGTCCTGATGG+TGG - chr2_2:48701117-48701136 Msa0255090:intron 45.0%
TTCAACAACTTCAGGATGGC+CGG - chr2_2:48701146-48701165 Msa0255090:intron 45.0%
CGTTCCCCACAAGAGAATAA+GGG + chr2_2:48701197-48701216 None:intergenic 45.0%
TCGTTCCCCACAAGAGAATA+AGG + chr2_2:48701198-48701217 None:intergenic 45.0%
TTATTCTCTTGTGGGGAACG+AGG - chr2_2:48701197-48701216 Msa0255090:intron 45.0%
! CTTCGGGAGCTAAGAACTTT+TGG + chr2_2:48701272-48701291 None:intergenic 45.0%
AAGTTCTTAGCTCCCGAAGT+TGG - chr2_2:48701273-48701292 Msa0255090:intron 45.0%
TCACTGTCAGAACCAACTTC+GGG + chr2_2:48701288-48701307 None:intergenic 45.0%
!! AGTTGGTTCTGACAGTGATG+AGG - chr2_2:48701290-48701309 Msa0255090:intron 45.0%
GAAGATGAGGATGAGGATGA+AGG - chr2_2:48701327-48701346 Msa0255090:intron 45.0%
!! TTGCTGAAGATGTTGGCTTG+AGG - chr2_2:48701415-48701434 Msa0255090:intron 45.0%
!! TGCTGAAGATGTTGGCTTGA+GGG - chr2_2:48701416-48701435 Msa0255090:intron 45.0%
CTGCTGTACTAAGGACGAAA+AGG - chr2_2:48701553-48701572 Msa0255090:intron 45.0%
! AGCAGCTTCAAGGAAGCTTT+TGG - chr2_2:48701674-48701693 Msa0255090:intron 45.0%
! AGGAGCTTGTTTGCAGTCTT+AGG - chr2_2:48702042-48702061 Msa0255090:CDS 45.0%
! CACGGTGAGATTACTGACTA+TGG - chr2_2:48702258-48702277 Msa0255090:five_prime_UTR 45.0%
TCTCCGTGTCAGTGCTTCAT+AGG + chr2_2:48698664-48698683 None:intergenic 50.0%
CACAGTGTCTGTGTCATGTC+TGG + chr2_2:48698687-48698706 None:intergenic 50.0%
TGACACAGACACTGTGACAC+CGG - chr2_2:48698691-48698710 Msa0255090:CDS 50.0%
!! GCACCGACACTTTTGATGGT+AGG + chr2_2:48698801-48698820 None:intergenic 50.0%
AAAAGGGTGGCTTCGTGGTT+GGG + chr2_2:48699577-48699596 None:intergenic 50.0%
GGGGGATGAGGAAGCAATTA+TGG - chr2_2:48699770-48699789 Msa0255090:CDS 50.0%
TCGCTGTCAGAACCAACATC+GGG + chr2_2:48699849-48699868 None:intergenic 50.0%
GAAAAGGATGCGAGCTCACA+GGG - chr2_2:48700136-48700155 Msa0255090:CDS 50.0%
ATTCCTCCTCAACAGCTTCG+AGG - chr2_2:48700234-48700253 Msa0255090:intron 50.0%
TTCCTCCTCAACAGCTTCGA+GGG - chr2_2:48700235-48700254 Msa0255090:intron 50.0%
! AACAGCTTCGAGGGAGCTTT+TGG - chr2_2:48700244-48700263 Msa0255090:intron 50.0%
ATGTCAGGAATGGGGAACTG+GGG - chr2_2:48700934-48700953 Msa0255090:intron 50.0%
GTGAAGTGATAAGGTGGTCG+AGG + chr2_2:48700967-48700986 None:intergenic 50.0%
GGGTGACATTGTGGTTAGGA+CGG + chr2_2:48701001-48701020 None:intergenic 50.0%
!! CATGGTTTGGTGTTGAAGGC+CGG + chr2_2:48701168-48701187 None:intergenic 50.0%
GAAAAGGAAGCGAGCTCACA+GGG - chr2_2:48701569-48701588 Msa0255090:intron 50.0%
TGGATTCCTCAGCAGCTTCA+AGG - chr2_2:48701664-48701683 Msa0255090:intron 50.0%
AAGCTTCCTTGAAGCTGCTG+AGG + chr2_2:48701673-48701692 None:intergenic 50.0%
!! CTTTGTGGCACCGACACTTC+TGG - chr2_2:48698076-48698095 Msa0255090:CDS 55.0%
AAAGGGTGGCTTCGTGGTTG+GGG + chr2_2:48699576-48699595 None:intergenic 55.0%
CAAAAGGGTGGCTTCGTGGT+TGG + chr2_2:48699578-48699597 None:intergenic 55.0%
!! TCGCTGAAGATGCTGGCTTG+AGG - chr2_2:48699982-48700001 Msa0255090:CDS 55.0%
CGAAAAGGATGCGAGCTCAC+AGG - chr2_2:48700135-48700154 Msa0255090:CDS 55.0%
AAGCTCCCTCGAAGCTGTTG+AGG + chr2_2:48700243-48700262 None:intergenic 55.0%
! ACTCGCAGCAGCAGGTTTTC+CGG + chr2_2:48700366-48700385 None:intergenic 55.0%
TCAACATCACTCGCAGCAGC+AGG + chr2_2:48700374-48700393 None:intergenic 55.0%
CGAAAAGGAAGCGAGCTCAC+AGG - chr2_2:48701568-48701587 Msa0255090:intron 55.0%
ATTCGCAGCCGCAGGTTTCT+CGG + chr2_2:48701796-48701815 None:intergenic 55.0%
TCAACATCATTCGCAGCCGC+AGG + chr2_2:48701804-48701823 None:intergenic 55.0%
TTACCGGTGGGAATGCGACA+CGG - chr2_2:48702240-48702259 Msa0255090:five_prime_UTR 55.0%
GGGACAAAAGGGTGGCTTCG+TGG + chr2_2:48699582-48699601 None:intergenic 60.0%
CTCCCTCGAAGCTGTTGAGG+AGG + chr2_2:48700240-48700259 None:intergenic 60.0%
! CTCGCAGCAGCAGGTTTTCC+GGG + chr2_2:48700365-48700384 None:intergenic 60.0%
GGCTGAACCCGAGAAACCTG+CGG - chr2_2:48701785-48701804 Msa0255090:intron 60.0%
TTCGCAGCCGCAGGTTTCTC+GGG + chr2_2:48701795-48701814 None:intergenic 60.0%
TCACCGTGTCGCATTCCCAC+CGG + chr2_2:48702246-48702265 None:intergenic 60.0%
GGGGCGGGGGAGTTAAGAAG+TGG + chr2_2:48699557-48699576 None:intergenic 65.0%
TGGCTTCGTGGTTGGGGCGG+GGG + chr2_2:48699570-48699589 None:intergenic 70.0%
GTGGCTTCGTGGTTGGGGCG+GGG + chr2_2:48699571-48699590 None:intergenic 70.0%
GGTGGCTTCGTGGTTGGGGC+GGG + chr2_2:48699572-48699591 None:intergenic 70.0%
GGGTGGCTTCGTGGTTGGGG+CGG + chr2_2:48699573-48699592 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 48697549 48702334 48697549 ID=Msa0255090;Name=Msa0255090
chr2_2 mRNA 48697549 48702334 48697549 ID=Msa0255090-mRNA-1;Parent=Msa0255090;Name=Msa0255090-mRNA-1;_AED=0.11;_eAED=0.11;_QI=108|1|0.87|1|0.85|0.87|8|414|504
chr2_2 exon 48697549 48697959 48697549 ID=Msa0255090-mRNA-1:exon:14781;Parent=Msa0255090-mRNA-1
chr2_2 exon 48698050 48698097 48698050 ID=Msa0255090-mRNA-1:exon:14780;Parent=Msa0255090-mRNA-1
chr2_2 exon 48698188 48698802 48698188 ID=Msa0255090-mRNA-1:exon:14779;Parent=Msa0255090-mRNA-1
chr2_2 exon 48699480 48699527 48699480 ID=Msa0255090-mRNA-1:exon:14778;Parent=Msa0255090-mRNA-1
chr2_2 exon 48699618 48700223 48699618 ID=Msa0255090-mRNA-1:exon:14777;Parent=Msa0255090-mRNA-1
chr2_2 exon 48701346 48701411 48701346 ID=Msa0255090-mRNA-1:exon:14776;Parent=Msa0255090-mRNA-1
chr2_2 exon 48701981 48702088 48701981 ID=Msa0255090-mRNA-1:exon:14775;Parent=Msa0255090-mRNA-1
chr2_2 exon 48702200 48702334 48702200 ID=Msa0255090-mRNA-1:exon:14774;Parent=Msa0255090-mRNA-1
chr2_2 five_prime_UTR 48702227 48702334 48702227 ID=Msa0255090-mRNA-1:five_prime_utr;Parent=Msa0255090-mRNA-1
chr2_2 CDS 48702200 48702226 48702200 ID=Msa0255090-mRNA-1:cds;Parent=Msa0255090-mRNA-1
chr2_2 CDS 48701981 48702088 48701981 ID=Msa0255090-mRNA-1:cds;Parent=Msa0255090-mRNA-1
chr2_2 CDS 48701346 48701411 48701346 ID=Msa0255090-mRNA-1:cds;Parent=Msa0255090-mRNA-1
chr2_2 CDS 48699618 48700223 48699618 ID=Msa0255090-mRNA-1:cds;Parent=Msa0255090-mRNA-1
chr2_2 CDS 48699480 48699527 48699480 ID=Msa0255090-mRNA-1:cds;Parent=Msa0255090-mRNA-1
chr2_2 CDS 48698188 48698802 48698188 ID=Msa0255090-mRNA-1:cds;Parent=Msa0255090-mRNA-1
chr2_2 CDS 48698053 48698097 48698053 ID=Msa0255090-mRNA-1:cds;Parent=Msa0255090-mRNA-1
chr2_2 three_prime_UTR 48698050 48698052 48698050 ID=Msa0255090-mRNA-1:three_prime_utr;Parent=Msa0255090-mRNA-1
chr2_2 three_prime_UTR 48697549 48697959 48697549 ID=Msa0255090-mRNA-1:three_prime_utr;Parent=Msa0255090-mRNA-1
Gene Sequence

>Msa0255090

ATGAAGATTACTGAATCATCATCTGAGAACAATGCTGATGCTGGAAATGATTTTACCCTTAAACCCAATGATAATGATTCAGTTCCATTTGAGCTTCAGGATCATGCAGAAGAGCTTCAACAAACTGTTACTAAGGATGGTGAGATTCAAGATGGAAAAACATTGGGTCTGAGTTCAGAAAATGGAAGAGAATTAGTTGAGGTAACCAATGAATCTGCGGTTTCTGATGCTAAATGGGTTTGCAAAAGTCCAGATGGTGGATTATCTTCAGGGTGGAACAATAAACCATGTTCTTACCCTTATTCTCTTGTGGGGGATGAGGAAGCAATTATGGCAGTTTTACACTTACAGCACAACGCAATAGAAGCTTGCCAAAAGTTCTTAGCTCCCGATGTTGGTTCTGACAGCGATGATGATGTTATTGAAGATGAAGATGAAGAGGAGGATGAGGATGAAAGTGAAGATGAGTTGGTAGAAAATTGTGAAGAAGAATCTAAAGAGTATAGATTCTTTGAGAAAGTGTTCGCTGAAGATGCTGGCTTGAGGAAATATTACGAGAACAATAGTAAACAAGGAGATTTTTATTGTTTGGTTTGTGGTGGTGTTAAGAAGAAAATGTGGAAGAGGTTTAAGGATTGTGTTGCACTGATTCAGCATTCCACTACTGTACTAAGGACGAAAAGGATGCGAGCTCACAGGGCTTATGCACAAATCGTCTGTAAAGTTGTTGGTTGGGACATTAATCAGTTACCAGCTATTGTGTTGAAGGATTTGAATTCCTCCTCAACAGCTTCGAGGGAGCTTTTGGTTGAACCCGGAAAACCTGCTGCTGCGAGTGATGTTGATGACCGAAATGTAACTCATGAATCTGTGGTTTCTGATGCTGAATGGGTTTGCAAAAGTCCTGATGGTGGATTATCTTCAACAACTTCAGGATGGCCGGCCTTCAACACCAAACCATGTTCTTACCCTTATTCTCTTGTGGGGAACGAGGAAGCGATTATGTCAGTTTTGCATTTGCAGCACAATGCAATAGATGCTTGCCAAAAGTTCTTAGCTCCCGAAGTTGGTTCTGACAGTGATGAGGATGTTATTGAAGATGAAGATGAGGATGAGGATGAAGGTGAAGATGAGTTTGGAGAAAATTGTGATGAAGAATCTGAACAGTATAAGTTCTTTGAGAAAGTGTTTGCTGAAGATGTTGGCTTGAGGGAATACTACGAGAACAATAGTAAAAAAGGAGATTTTTATTGTTTGGTTTGTGGTGGTGTTAAGAAGAAAATGTGGAAGAGGTTTAAGGATTGTGTTGCACTGATTCAGCATTCAACTGCTGTACTAAGGACGAAAAGGAAGCGAGCTCACAGGGCTTATGCACAAGTCGTCTGTAAAATTGTTGGTTGGGACATTAAACAGTTACCAACTATTGTGTTGAAGGATTTGGATTCCTCAGCAGCTTCAAGGAAGCTTTTGGCTGAACCCGAGAAACCTGCGGCTGCGAATGATGTTGATGATTGA

Protein sequence

>Msa0255090

MKITESSSENNADAGNDFTLKPNDNDSVPFELQDHAEELQQTVTKDGEIQDGKTLGLSSENGRELVEVTNESAVSDAKWVCKSPDGGLSSGWNNKPCSYPYSLVGDEEAIMAVLHLQHNAIEACQKFLAPDVGSDSDDDVIEDEDEEEDEDESEDELVENCEEESKEYRFFEKVFAEDAGLRKYYENNSKQGDFYCLVCGGVKKKMWKRFKDCVALIQHSTTVLRTKRMRAHRAYAQIVCKVVGWDINQLPAIVLKDLNSSSTASRELLVEPGKPAAASDVDDRNVTHESVVSDAEWVCKSPDGGLSSTTSGWPAFNTKPCSYPYSLVGNEEAIMSVLHLQHNAIDACQKFLAPEVGSDSDEDVIEDEDEDEDEGEDEFGENCDEESEQYKFFEKVFAEDVGLREYYENNSKKGDFYCLVCGGVKKKMWKRFKDCVALIQHSTAVLRTKRKRAHRAYAQVVCKIVGWDIKQLPTIVLKDLDSSAASRKLLAEPEKPAAANDVDD*