AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0259380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259380 MtrunA17_Chr2g0315751 89.225 529 24 6 1 503 1 522 0.0 867
Msa0259380 MtrunA17_Chr2g0315751 83.182 220 30 3 286 504 66 279 4.08e-107 329
Msa0259380 MtrunA17_Chr6g0472321 54.023 87 39 1 392 477 186 272 7.82e-22 97.1
Msa0259380 MtrunA17_Chr6g0472321 47.115 104 51 2 170 272 186 286 1.89e-20 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259380 AT1G78810.2 32.274 409 211 9 80 486 100 444 1.94e-57 198
Msa0259380 AT1G78810.3 32.274 409 211 9 80 486 100 444 1.94e-57 198
Msa0259380 AT1G78810.1 32.274 409 211 9 80 486 100 444 2.34e-57 198

Find 136 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCATTATCATTGGGTTTA+AGG 0.083244 2_2:+56365403 None:intergenic
GAAAATGTGGAAGAGGTTTA+AGG 0.178260 2_2:-56361724 Msa0259380:CDS
GAAAATGTGGAAGAGGTTTA+AGG 0.178260 2_2:-56363157 Msa0259380:CDS
CATATTTAATCCATTCATTT+TGG 0.178509 2_2:+56361248 None:intergenic
CTGCGGTTTCTGATGCTAAA+TGG 0.188130 2_2:-56363554 Msa0259380:CDS
CATGCTGTTCTTCACAATAT+TGG 0.227270 2_2:-56361210 Msa0259380:three_prime_UTR
AACTATTGTGTTGAAGGATT+TGG 0.247357 2_2:-56361583 Msa0259380:CDS
ATGCTGTTCTTCACAATATT+GGG 0.247733 2_2:-56361209 Msa0259380:three_prime_UTR
CAAAATGAATGGATTAAATA+TGG 0.256022 2_2:-56361247 Msa0259380:three_prime_UTR
TTCAGTTCCATTTGAGCTTC+AGG 0.258938 2_2:-56365382 Msa0259380:CDS
CTTCGGGAGCTAAGAACTTT+TGG 0.271254 2_2:+56361958 None:intergenic
TCGTTCCCCACAAGAGAATA+AGG 0.274444 2_2:+56362032 None:intergenic
AACAGCTTCGAGGGAGCTTT+TGG 0.297071 2_2:-56362983 Msa0259380:intron
AGGAGCTTGTTTGCAGTCTT+AGG 0.301072 2_2:-56361185 Msa0259380:three_prime_UTR
ATCATTATCATTGGGTTTAA+GGG 0.307730 2_2:+56365404 None:intergenic
GACACAAAATAATAGTAAAA+AGG 0.315354 2_2:+56361043 None:intergenic
TAATCCTGTTGATGACAATT+AGG 0.323413 2_2:-56361292 Msa0259380:three_prime_UTR
CATCGGGAGCTAAGAACTTT+TGG 0.328140 2_2:+56363397 None:intergenic
AGCAGCTTCAAGGAAGCTTT+TGG 0.330083 2_2:-56361553 Msa0259380:intron
GGATTATCTTCAACAACTTC+AGG 0.332801 2_2:-56362089 Msa0259380:CDS
TGGAACTGAATCATTATCAT+TGG 0.349423 2_2:+56365395 None:intergenic
TTGGGTCTGAGTTCAGAAAA+TGG 0.351467 2_2:-56364728 Msa0259380:CDS
CCAGATGGTGGATTATCTTC+AGG 0.369017 2_2:-56363519 Msa0259380:CDS
ATGGATTAAATATGGTTTGT+AGG 0.372698 2_2:-56361239 Msa0259380:three_prime_UTR
ATTCGCAGCCGCAGGTTTCT+CGG 0.373500 2_2:+56361434 None:intergenic
GTTACCAGCTATTGTGTTGA+AGG 0.381631 2_2:-56363022 Msa0259380:CDS
TCTTACCCTTATTCTCTTGT+GGG 0.382075 2_2:-56363477 Msa0259380:CDS
GCTTCAACAAACTGTTACTA+AGG 0.384254 2_2:-56365346 Msa0259380:intron
TTCTTACCCTTATTCTCTTG+TGG 0.385665 2_2:-56362039 Msa0259380:CDS
TGTGGTTTCTGATGCTGAAT+GGG 0.387056 2_2:-56362132 Msa0259380:CDS
TCTTACCCTTATTCTCTTGT+GGG 0.389075 2_2:-56362038 Msa0259380:CDS
CTGTGGTTTCTGATGCTGAA+TGG 0.389876 2_2:-56362133 Msa0259380:CDS
TTCTTACCCTTATTCTCTTG+TGG 0.394000 2_2:-56363478 Msa0259380:CDS
TGAAGATGAAGAGGAGGATG+AGG 0.395179 2_2:-56363340 Msa0259380:CDS
GCATGATCCTGAAGCTCAAA+TGG 0.399187 2_2:+56365375 None:intergenic
ATCAGAAACCGCAGATTCAT+TGG 0.399717 2_2:+56363563 None:intergenic
CACGGTGAGATTACTGACTA+TGG 0.401443 2_2:-56360969 Msa0259380:three_prime_UTR
TGCGGTTTCTGATGCTAAAT+GGG 0.405883 2_2:-56363553 Msa0259380:CDS
GTTACCAACTATTGTGTTGA+AGG 0.406576 2_2:-56361589 Msa0259380:CDS
GGAACTGAATCATTATCATT+GGG 0.424784 2_2:+56365396 None:intergenic
ACATCCTAATTGTCATCAAC+AGG 0.429381 2_2:+56361288 None:intergenic
ACTATGAAAGTGATACTTAC+CGG 0.429530 2_2:-56361003 Msa0259380:three_prime_UTR
GATGAAGGTGAAGATGAGTT+TGG 0.438508 2_2:-56361885 Msa0259380:CDS
TGGATTAAATATGGTTTGTA+GGG 0.448341 2_2:-56361238 Msa0259380:three_prime_UTR
GAATTGGTGAGGAAAGTGTT+AGG 0.449273 2_2:+56365614 None:intergenic
TGCTGAAGATGTTGGCTTGA+GGG 0.452073 2_2:-56361811 Msa0259380:CDS
TGGATTCCTCAGCAGCTTCA+AGG 0.456458 2_2:-56361563 Msa0259380:CDS
TTATAGAACAATGCTGATGC+TGG 0.458175 2_2:-56365438 Msa0259380:intron
TCACTGTCAGAACCAACTTC+GGG 0.460153 2_2:+56361942 None:intergenic
GAGAAATGAGAAAGTGAAGC+TGG 0.462206 2_2:+56365662 None:intergenic
CGTCTGTAAAATTGTTGGTT+GGG 0.464214 2_2:-56361622 Msa0259380:CDS
AAATCCTTCAACACAATAGT+TGG 0.467348 2_2:+56361585 None:intergenic
TTCGCAGCCGCAGGTTTCTC+GGG 0.467970 2_2:+56361435 None:intergenic
AGAACATGGTTTGGTGTTGA+AGG 0.472039 2_2:+56362058 None:intergenic
GAAAGTGAAGCCAAAATGAA+TGG 0.473824 2_2:-56361258 Msa0259380:three_prime_UTR
ATCACTGTCAGAACCAACTT+CGG 0.474727 2_2:+56361941 None:intergenic
CGTCTGTAAAGTTGTTGGTT+GGG 0.475945 2_2:-56363055 Msa0259380:CDS
AGAGAGAGTTTGAATTGGTG+AGG 0.482911 2_2:+56365603 None:intergenic
CATGGTTTGGTGTTGAAGGC+CGG 0.483188 2_2:+56362062 None:intergenic
AAATCCTTCAACACAATAGC+TGG 0.483908 2_2:+56363018 None:intergenic
TCAACATCATTCGCAGCCGC+AGG 0.497856 2_2:+56361426 None:intergenic
CTGCTGTACTAAGGACGAAA+AGG 0.499574 2_2:-56361674 Msa0259380:CDS
AAGGATGGTGAGATTCAAGA+TGG 0.504558 2_2:-56364758 Msa0259380:CDS
ATCTCTTAGTAGTTAGTGCA+AGG 0.506103 2_2:+56361154 None:intergenic
CAGATGGTGGATTATCTTCA+GGG 0.506852 2_2:-56363518 Msa0259380:CDS
GTTGAAGATAATCCACCATC+AGG 0.508474 2_2:+56362098 None:intergenic
TCGTCTGTAAAGTTGTTGGT+TGG 0.509226 2_2:-56363056 Msa0259380:CDS
CCTGAAGATAATCCACCATC+TGG 0.511429 2_2:+56363519 None:intergenic
CAAATCGTCTGTAAAGTTGT+TGG 0.511474 2_2:-56363060 Msa0259380:CDS
TTAAGAAGAAAATGTGGAAG+AGG 0.512472 2_2:-56361731 Msa0259380:CDS
TTAAGAAGAAAATGTGGAAG+AGG 0.512472 2_2:-56363164 Msa0259380:CDS
TTCAACAACTTCAGGATGGC+CGG 0.512479 2_2:-56362081 Msa0259380:CDS
CAAGTCGTCTGTAAAATTGT+TGG 0.514580 2_2:-56361627 Msa0259380:CDS
CGAAAAGGATGCGAGCTCAC+AGG 0.516813 2_2:-56363092 Msa0259380:CDS
CTACTGTACTAAGGACGAAA+AGG 0.517368 2_2:-56363107 Msa0259380:CDS
ATTCCTCCTCAACAGCTTCG+AGG 0.517918 2_2:-56362993 Msa0259380:CDS
GAGATTACTGACTATGGTTA+CGG 0.518739 2_2:-56360963 Msa0259380:three_prime_UTR
ATAAGGGTAAGAACATGGTT+TGG 0.519095 2_2:+56362049 None:intergenic
TCGTCTGTAAAATTGTTGGT+TGG 0.521628 2_2:-56361623 Msa0259380:CDS
CGTTCCCCACAAGAGAATAA+GGG 0.522813 2_2:+56362033 None:intergenic
AGCATTCAACTGCTGTACTA+AGG 0.523950 2_2:-56361683 Msa0259380:CDS
TTCCTCCTCAACAGCTTCGA+GGG 0.527626 2_2:-56362992 Msa0259380:CDS
TTTCGTCCTTAGTACAGTAG+TGG 0.528949 2_2:+56363110 None:intergenic
CGAAAAGGAAGCGAGCTCAC+AGG 0.538714 2_2:-56361659 Msa0259380:CDS
AAGTTCTTAGCTCCCGAAGT+TGG 0.540001 2_2:-56361954 Msa0259380:CDS
AGCATTCCACTACTGTACTA+AGG 0.540686 2_2:-56363116 Msa0259380:CDS
GAAGATGAGGATGAGGATGA+AGG 0.542015 2_2:-56361900 Msa0259380:CDS
GGATGAAAGTGAAGATGAGT+TGG 0.543518 2_2:-56363319 Msa0259380:CDS
CTTACCCTTATTCTCTTGTG+GGG 0.545295 2_2:-56363476 Msa0259380:CDS
AAGCTCCCTCGAAGCTGTTG+AGG 0.545942 2_2:+56362987 None:intergenic
GAAAAGGATGCGAGCTCACA+GGG 0.552039 2_2:-56363091 Msa0259380:CDS
TTACCCTTATTCTCTTGTGG+GGG 0.552408 2_2:-56363475 Msa0259380:CDS
TCGCTGTCAGAACCAACATC+GGG 0.556636 2_2:+56363381 None:intergenic
CTTACCCTTATTCTCTTGTG+GGG 0.563903 2_2:-56362037 Msa0259380:CDS
TCAACATCACTCGCAGCAGC+AGG 0.565239 2_2:+56362856 None:intergenic
GAAAAGGAAGCGAGCTCACA+GGG 0.567524 2_2:-56361658 Msa0259380:CDS
TGAAGATGAAGATGAAGAGG+AGG 0.567889 2_2:-56363346 Msa0259380:CDS
AAGCTTCCTTGAAGCTGCTG+AGG 0.568779 2_2:+56361557 None:intergenic
TGAAGATGAAGATGAGGATG+AGG 0.569285 2_2:-56361907 Msa0259380:CDS
TATTGAAGATGAAGATGAAG+AGG 0.569364 2_2:-56363349 Msa0259380:CDS
ATCGCTGTCAGAACCAACAT+CGG 0.576903 2_2:+56363380 None:intergenic
ACGATGCTTAAAATTGCAAG+TGG 0.588629 2_2:-56361087 Msa0259380:three_prime_UTR
CTCCCTCGAAGCTGTTGAGG+AGG 0.593342 2_2:+56362990 None:intergenic
AAGTTCTTAGCTCCCGATGT+TGG 0.594788 2_2:-56363393 Msa0259380:CDS
AAAGTGTTCGCTGAAGATGC+TGG 0.595637 2_2:-56363252 Msa0259380:CDS
TCACCGTGTCGCATTCCCAC+CGG 0.597259 2_2:+56360984 None:intergenic
TCTCTTAGTAGTTAGTGCAA+GGG 0.598520 2_2:+56361155 None:intergenic
TTGCTGAAGATGTTGGCTTG+AGG 0.599340 2_2:-56361812 Msa0259380:CDS
TGGGTTTGCAAAAGTCCAGA+TGG 0.610274 2_2:-56363534 Msa0259380:CDS
TGCTGTTCTTCACAATATTG+GGG 0.611985 2_2:-56361208 Msa0259380:three_prime_UTR
TCGCTGAAGATGCTGGCTTG+AGG 0.620018 2_2:-56363245 Msa0259380:CDS
GTAGGTAACTCATGAATCTG+TGG 0.623545 2_2:-56362150 Msa0259380:intron
TTATTCTCTTGTGGGGAACG+AGG 0.629352 2_2:-56362030 Msa0259380:CDS
GTGGTGTTAAGAAGAAAATG+TGG 0.629707 2_2:-56361737 Msa0259380:CDS
GTGGTGTTAAGAAGAAAATG+TGG 0.629707 2_2:-56363170 Msa0259380:CDS
AATATTGTGAAGAACAGCAT+GGG 0.639718 2_2:+56361212 None:intergenic
CAATATTGTGAAGAACAGCA+TGG 0.642297 2_2:+56361211 None:intergenic
TACGAGAACAATAGTAAACA+AGG 0.643032 2_2:-56363216 Msa0259380:CDS
AAAGTGTTTGCTGAAGATGT+TGG 0.647008 2_2:-56361819 Msa0259380:CDS
GTTTGCAAAAGTCCAGATGG+TGG 0.648430 2_2:-56363531 Msa0259380:CDS
GATTACTGAATCATCATCTG+AGG 0.648513 2_2:-56365565 Msa0259380:intron
TATCTTCAACAACTTCAGGA+TGG 0.648539 2_2:-56362085 Msa0259380:CDS
AAATGGAAGAGAATTAGTTG+AGG 0.648698 2_2:-56364711 Msa0259380:intron
TGGGTTTGCAAAAGTCCTGA+TGG 0.652543 2_2:-56362113 Msa0259380:CDS
TTACCGGTGGGAATGCGACA+CGG 0.653909 2_2:-56360987 Msa0259380:three_prime_UTR
TGTTATTGAAGATGAAGATG+AGG 0.654393 2_2:-56361913 Msa0259380:CDS
ATGAAAGTGATACTTACCGG+TGG 0.655296 2_2:-56361000 Msa0259380:three_prime_UTR
AGAGAATAAGGGTAAGAACA+TGG 0.658460 2_2:+56362044 None:intergenic
AGAGAATAAGGGTAAGAACA+TGG 0.658460 2_2:+56363483 None:intergenic
TGTTCTTCACAATATTGGGG+AGG 0.661417 2_2:-56361205 Msa0259380:three_prime_UTR
GTAGGTAACCAATGAATCTG+CGG 0.663446 2_2:-56363571 Msa0259380:intron
TGAAAGTGATACTTACCGGT+GGG 0.664186 2_2:-56360999 Msa0259380:three_prime_UTR
GGCTGAACCCGAGAAACCTG+CGG 0.683846 2_2:-56361442 Msa0259380:CDS
GTTTGCAAAAGTCCTGATGG+TGG 0.690415 2_2:-56362110 Msa0259380:CDS
AGTTGGTTCTGACAGTGATG+AGG 0.694565 2_2:-56361937 Msa0259380:CDS
ATGGTGGATTATCTTCAGGG+TGG 0.726118 2_2:-56363515 Msa0259380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAGTTTTTTTTTTTTAATC+CGG + chr2_2:56361714-56361733 None:intergenic 10.0%
!! TTTACAAAATAGTAATTATT+TGG - chr2_2:56362524-56362543 Msa0259380:intron 10.0%
!! TTACAAAATAGTAATTATTT+GGG - chr2_2:56362525-56362544 Msa0259380:intron 10.0%
!! AATAAAAATTTAAATTGACA+AGG + chr2_2:56363840-56363859 None:intergenic 10.0%
!!! ATAAATAATTGATTTGAGTT+TGG - chr2_2:56361412-56361431 Msa0259380:intron 15.0%
!!! TCATTTTCGTAAATTATTAT+AGG - chr2_2:56361515-56361534 Msa0259380:intron 15.0%
!! TAGATTAAAATAGTGAAAAT+CGG - chr2_2:56361590-56361609 Msa0259380:CDS 15.0%
!!! AATTTGAAAAATGGATTAAT+TGG - chr2_2:56362084-56362103 Msa0259380:CDS 15.0%
!! TTTAAATAAATAGAGAAGTT+AGG - chr2_2:56362498-56362517 Msa0259380:intron 15.0%
!!! ACTATTTTCACATATTTTTT+TGG - chr2_2:56362833-56362852 Msa0259380:intron 15.0%
!!! TTTTAATGGAATTTTAATGT+AGG - chr2_2:56363004-56363023 Msa0259380:CDS 15.0%
!! AAGTGAATAAAGTTTGATTA+AGG + chr2_2:56361084-56361103 None:intergenic 20.0%
!! AGTTAAAATCATATGAAACA+AGG + chr2_2:56361135-56361154 None:intergenic 20.0%
!!! TCATAATCACTTTTATTGAT+GGG + chr2_2:56361391-56361410 None:intergenic 20.0%
!!! TTCATAATCACTTTTATTGA+TGG + chr2_2:56361392-56361411 None:intergenic 20.0%
!!! TCCATTTTTCAAATTTTTAC+CGG + chr2_2:56362079-56362098 None:intergenic 20.0%
!!! AAATAGTAATTATTTGGGAT+CGG - chr2_2:56362530-56362549 Msa0259380:intron 20.0%
!! TAAATGTTAGTATTGTTAGT+AGG - chr2_2:56362870-56362889 Msa0259380:CDS 20.0%
!! AAATGTTAGTATTGTTAGTA+GGG - chr2_2:56362871-56362890 Msa0259380:CDS 20.0%
!!! TTCTGAATTCTGTTTTTTAA+TGG - chr2_2:56362990-56363009 Msa0259380:CDS 20.0%
!! AGTATATGATACTTACATTT+CGG + chr2_2:56363766-56363785 None:intergenic 20.0%
!!! TAATCTCTTATTATTTTCTC+TGG - chr2_2:56363811-56363830 Msa0259380:intron 20.0%
!! ATTCCAATTTGCAAAAAAAT+TGG + chr2_2:56364160-56364179 None:intergenic 20.0%
!! TACTAATGAAATATCAATGT+AGG - chr2_2:56364425-56364444 Msa0259380:intron 20.0%
!!! AAAAGGAGATTTTTATTGTT+TGG - chr2_2:56364827-56364846 Msa0259380:intron 20.0%
!! CAACATAATTAGCAATAATA+AGG + chr2_2:56365117-56365136 None:intergenic 20.0%
!!! CATATTTAATCCATTCATTT+TGG + chr2_2:56365348-56365367 None:intergenic 20.0%
!!! CAAAATGAATGGATTAAATA+TGG - chr2_2:56365346-56365365 Msa0259380:intron 20.0%
!! ATAATAGTAAAAAGGAACAT+GGG + chr2_2:56365545-56365564 None:intergenic 20.0%
!! AATAATAGTAAAAAGGAACA+TGG + chr2_2:56365546-56365565 None:intergenic 20.0%
!! GACACAAAATAATAGTAAAA+AGG + chr2_2:56365553-56365572 None:intergenic 20.0%
!!! TTTTACTATTATTTTGTGTC+TGG - chr2_2:56365553-56365572 Msa0259380:intron 20.0%
! ATCATTATCATTGGGTTTAA+GGG + chr2_2:56361192-56361211 None:intergenic 25.0%
! AATCATTATCATTGGGTTTA+AGG + chr2_2:56361193-56361212 None:intergenic 25.0%
! ATTCAAGATGGAAAAACATT+GGG - chr2_2:56361847-56361866 Msa0259380:CDS 25.0%
! TTAGTTGAGGTAAAACAATT+TGG - chr2_2:56361895-56361914 Msa0259380:CDS 25.0%
! ACCGGTAAAAATTTGAAAAA+TGG - chr2_2:56362075-56362094 Msa0259380:CDS 25.0%
!! ATGTAAGACATTTCATTTTC+TGG - chr2_2:56362283-56362302 Msa0259380:intron 25.0%
!! TCTATGATTTGGAAAATCAA+GGG + chr2_2:56362732-56362751 None:intergenic 25.0%
!! ATCTATGATTTGGAAAATCA+AGG + chr2_2:56362733-56362752 None:intergenic 25.0%
! ATCACATTCATGACTATTAT+TGG - chr2_2:56362763-56362782 Msa0259380:intron 25.0%
!!! TTTTTTTGGAACGAGTAAAA+AGG - chr2_2:56362847-56362866 Msa0259380:CDS 25.0%
!! ACAAGGAGATTTTTATTGTT+TGG - chr2_2:56363394-56363413 Msa0259380:CDS 25.0%
!!! GATTTTTATTGTTTGGTTTG+TGG - chr2_2:56363401-56363420 Msa0259380:CDS 25.0%
! CAATCTAATAAGCAAAAATG+AGG + chr2_2:56363687-56363706 None:intergenic 25.0%
!!! TAGATTGTATTGATTTTTGC+AGG - chr2_2:56363700-56363719 Msa0259380:intron 25.0%
! TATTATATGTGCATGTTTCT+TGG - chr2_2:56363856-56363875 Msa0259380:intron 25.0%
! ACTGAATTATCTGTATTGTA+TGG - chr2_2:56363952-56363971 Msa0259380:intron 25.0%
! TAGAATTAACCAGAAAATGA+AGG + chr2_2:56364000-56364019 None:intergenic 25.0%
!!! ACTCCAATTTTTTTGCAAAT+TGG - chr2_2:56364154-56364173 Msa0259380:intron 25.0%
! AAAACATCAAAGAGAATCAT+GGG + chr2_2:56364396-56364415 None:intergenic 25.0%
! TAAAACATCAAAGAGAATCA+TGG + chr2_2:56364397-56364416 None:intergenic 25.0%
! TACGAGAACAATAGTAAAAA+AGG - chr2_2:56364810-56364829 Msa0259380:intron 25.0%
!!! GATTTTTATTGTTTGGTTTG+TGG - chr2_2:56363401-56363420 Msa0259380:CDS 25.0%
! ATTGTATGTCAGATGTAATT+TGG - chr2_2:56365221-56365240 Msa0259380:intron 25.0%
!! ATGGATTAAATATGGTTTGT+AGG - chr2_2:56365354-56365373 Msa0259380:CDS 25.0%
!! TGGATTAAATATGGTTTGTA+GGG - chr2_2:56365355-56365374 Msa0259380:CDS 25.0%
! TAATAGTAAAAAGGAACATG+GGG + chr2_2:56365544-56365563 None:intergenic 25.0%
GGAACTGAATCATTATCATT+GGG + chr2_2:56361200-56361219 None:intergenic 30.0%
TGGAACTGAATCATTATCAT+TGG + chr2_2:56361201-56361220 None:intergenic 30.0%
! AGTTTCACTTTACCCTTTTA+TGG - chr2_2:56361313-56361332 Msa0259380:intron 30.0%
! GTTTCACTTTACCCTTTTAT+GGG - chr2_2:56361314-56361333 Msa0259380:intron 30.0%
! TACCCTTTTATGGGTTTAAA+TGG - chr2_2:56361323-56361342 Msa0259380:intron 30.0%
! ACCCTTTTATGGGTTTAAAT+GGG - chr2_2:56361324-56361343 Msa0259380:intron 30.0%
ACCCATTTAAACCCATAAAA+GGG + chr2_2:56361328-56361347 None:intergenic 30.0%
AACCCATTTAAACCCATAAA+AGG + chr2_2:56361329-56361348 None:intergenic 30.0%
TTACAAAAGCTCAAAGAAAC+CGG - chr2_2:56361692-56361711 Msa0259380:CDS 30.0%
GATTCAAGATGGAAAAACAT+TGG - chr2_2:56361846-56361865 Msa0259380:CDS 30.0%
AAATGGAAGAGAATTAGTTG+AGG - chr2_2:56361882-56361901 Msa0259380:CDS 30.0%
!!! GTAATCACATGTTTTGATGT+CGG - chr2_2:56362109-56362128 Msa0259380:CDS 30.0%
TCAATTAAATTGACACTAGC+AGG + chr2_2:56362381-56362400 None:intergenic 30.0%
! TGTATCCCTTTTATTCTGTT+AGG - chr2_2:56362404-56362423 Msa0259380:intron 30.0%
AGAGACCTAACAGAATAAAA+GGG + chr2_2:56362412-56362431 None:intergenic 30.0%
AAGAGACCTAACAGAATAAA+AGG + chr2_2:56362413-56362432 None:intergenic 30.0%
GAAAACGATTCACAAAACAA+AGG + chr2_2:56362680-56362699 None:intergenic 30.0%
TGAATCATCTCTGATAATCA+GGG + chr2_2:56362969-56362988 None:intergenic 30.0%
TATTGAAGATGAAGATGAAG+AGG - chr2_2:56363244-56363263 Msa0259380:CDS 30.0%
TACGAGAACAATAGTAAACA+AGG - chr2_2:56363377-56363396 Msa0259380:CDS 30.0%
!!! TTTTATTGTTTGGTTTGTGG+TGG - chr2_2:56363404-56363423 Msa0259380:CDS 30.0%
TTAAGAAGAAAATGTGGAAG+AGG - chr2_2:56363429-56363448 Msa0259380:CDS 30.0%
! ATGTAAGATCCTTCATTTTC+TGG - chr2_2:56363988-56364007 Msa0259380:intron 30.0%
AAGTGTTATCTCTTCATTCA+TGG - chr2_2:56364100-56364119 Msa0259380:intron 30.0%
TCTTCATTCATGGCTATTAT+TGG - chr2_2:56364110-56364129 Msa0259380:intron 30.0%
CAATACATACTACTATTCCT+CGG + chr2_2:56364185-56364204 None:intergenic 30.0%
GGAATAGTAGTATGTATTGT+TGG - chr2_2:56364186-56364205 Msa0259380:intron 30.0%
TAGTAACTTAGTGTTATGTC+AGG - chr2_2:56364285-56364304 Msa0259380:intron 30.0%
AGTTAAAGAGTGAAGTGATA+AGG + chr2_2:56364342-56364361 None:intergenic 30.0%
AAGAGAATCATGGGATATAA+GGG + chr2_2:56364387-56364406 None:intergenic 30.0%
AAAGAGAATCATGGGATATA+AGG + chr2_2:56364388-56364407 None:intergenic 30.0%
TGTTATTGAAGATGAAGATG+AGG - chr2_2:56363241-56363260 Msa0259380:CDS 30.0%
!!! TTTTATTGTTTGGTTTGTGG+TGG - chr2_2:56363404-56363423 Msa0259380:CDS 30.0%
TTAAGAAGAAAATGTGGAAG+AGG - chr2_2:56363429-56363448 Msa0259380:CDS 30.0%
AAATCCTTCAACACAATAGT+TGG + chr2_2:56365011-56365030 None:intergenic 30.0%
AACTATTGTGTTGAAGGATT+TGG - chr2_2:56365010-56365029 Msa0259380:intron 30.0%
!! TAATCCTGTTGATGACAATT+AGG - chr2_2:56365301-56365320 Msa0259380:intron 30.0%
AATATTGTGAAGAACAGCAT+GGG + chr2_2:56365384-56365403 None:intergenic 30.0%
ATGCTGTTCTTCACAATATT+GGG - chr2_2:56365384-56365403 Msa0259380:CDS 30.0%
ACTATGAAAGTGATACTTAC+CGG - chr2_2:56365590-56365609 Msa0259380:exon 30.0%
GATTACTGAATCATCATCTG+AGG - chr2_2:56361028-56361047 Msa0259380:three_prime_UTR 35.0%
TTATAGAACAATGCTGATGC+TGG - chr2_2:56361155-56361174 Msa0259380:three_prime_UTR 35.0%
GCTTCAACAAACTGTTACTA+AGG - chr2_2:56361247-56361266 Msa0259380:three_prime_UTR 35.0%
!! TGGGTTCATGTATTTTTGCT+TGG - chr2_2:56361343-56361362 Msa0259380:intron 35.0%
GAGTTTGGTTATACTCTTTG+TGG - chr2_2:56361427-56361446 Msa0259380:CDS 35.0%
! TCTATTGATTGTTGTGTCTG+CGG - chr2_2:56361803-56361822 Msa0259380:CDS 35.0%
!! GCTGAAAAGAAAAGCATCAA+GGG + chr2_2:56362206-56362225 None:intergenic 35.0%
!! AGCTGAAAAGAAAAGCATCA+AGG + chr2_2:56362207-56362226 None:intergenic 35.0%
! GTGTGTCTGATTGATAATCT+AGG - chr2_2:56362256-56362275 Msa0259380:intron 35.0%
AGTTTCCAGATATACAGAAC+CGG - chr2_2:56362347-56362366 Msa0259380:intron 35.0%
! TTTGGGATCGGATATTGATT+TGG - chr2_2:56362542-56362561 Msa0259380:intron 35.0%
GATCAAGCTCTTGAAAATCT+TGG - chr2_2:56362568-56362587 Msa0259380:intron 35.0%
AAGCTCTTGAAAATCTTGGT+GGG - chr2_2:56362572-56362591 Msa0259380:intron 35.0%
! TTTTGTGAATCGTTTTCCAG+AGG - chr2_2:56362683-56362702 Msa0259380:intron 35.0%
CAGAATTTATTTCCAACCTC+TGG + chr2_2:56362702-56362721 None:intergenic 35.0%
AGAAACTGGCATCTATGATT+TGG + chr2_2:56362743-56362762 None:intergenic 35.0%
GTCATGAATGTGATAGAAAC+TGG + chr2_2:56362757-56362776 None:intergenic 35.0%
AGTTAAGAAGTGGAGTGATA+AGG + chr2_2:56362913-56362932 None:intergenic 35.0%
GAATCATCTCTGATAATCAG+GGG + chr2_2:56362968-56362987 None:intergenic 35.0%
GTGAATCATCTCTGATAATC+AGG + chr2_2:56362970-56362989 None:intergenic 35.0%
AGAGAATAAGGGTAAGAACA+TGG + chr2_2:56363113-56363132 None:intergenic 35.0%
TTCTTACCCTTATTCTCTTG+TGG - chr2_2:56363115-56363134 Msa0259380:CDS 35.0%
TCTTACCCTTATTCTCTTGT+GGG - chr2_2:56363116-56363135 Msa0259380:CDS 35.0%
! GTGGTGTTAAGAAGAAAATG+TGG - chr2_2:56363423-56363442 Msa0259380:CDS 35.0%
GAAAATGTGGAAGAGGTTTA+AGG - chr2_2:56363436-56363455 Msa0259380:CDS 35.0%
CAAATCGTCTGTAAAGTTGT+TGG - chr2_2:56363533-56363552 Msa0259380:CDS 35.0%
AAATCCTTCAACACAATAGC+TGG + chr2_2:56363578-56363597 None:intergenic 35.0%
ATATGTGCATGTTTCTTGGT+TGG - chr2_2:56363860-56363879 Msa0259380:intron 35.0%
TCTGTATTGTATGGTAGTCT+AGG - chr2_2:56363961-56363980 Msa0259380:intron 35.0%
AGAAATAGTTACGAGATGCA+CGG - chr2_2:56364041-56364060 Msa0259380:intron 35.0%
TCAATTCAATTGACACTAGC+AGG + chr2_2:56364081-56364100 None:intergenic 35.0%
ACTTAGTGTTATGTCAGGAA+TGG - chr2_2:56364290-56364309 Msa0259380:intron 35.0%
CTTAGTGTTATGTCAGGAAT+GGG - chr2_2:56364291-56364310 Msa0259380:intron 35.0%
TTAGTGTTATGTCAGGAATG+GGG - chr2_2:56364292-56364311 Msa0259380:intron 35.0%
TAAAGAGTGAAGTGATAAGG+TGG + chr2_2:56364339-56364358 None:intergenic 35.0%
GGATTATCTTCAACAACTTC+AGG - chr2_2:56364504-56364523 Msa0259380:intron 35.0%
TATCTTCAACAACTTCAGGA+TGG - chr2_2:56364508-56364527 Msa0259380:intron 35.0%
ATAAGGGTAAGAACATGGTT+TGG + chr2_2:56363108-56363127 None:intergenic 35.0%
AGAGAATAAGGGTAAGAACA+TGG + chr2_2:56363113-56363132 None:intergenic 35.0%
TTCTTACCCTTATTCTCTTG+TGG - chr2_2:56363115-56363134 Msa0259380:CDS 35.0%
TCTTACCCTTATTCTCTTGT+GGG - chr2_2:56363116-56363135 Msa0259380:CDS 35.0%
! AAAGTGTTTGCTGAAGATGT+TGG - chr2_2:56364774-56364793 Msa0259380:intron 35.0%
! GTGGTGTTAAGAAGAAAATG+TGG - chr2_2:56363423-56363442 Msa0259380:CDS 35.0%
GAAAATGTGGAAGAGGTTTA+AGG - chr2_2:56363436-56363455 Msa0259380:CDS 35.0%
CAAGTCGTCTGTAAAATTGT+TGG - chr2_2:56364966-56364985 Msa0259380:intron 35.0%
TCGTCTGTAAAATTGTTGGT+TGG - chr2_2:56364970-56364989 Msa0259380:intron 35.0%
! CGTCTGTAAAATTGTTGGTT+GGG - chr2_2:56364971-56364990 Msa0259380:intron 35.0%
GTTACCAACTATTGTGTTGA+AGG - chr2_2:56365004-56365023 Msa0259380:intron 35.0%
!!! TATGTTGCGTTGATTTTCAC+AGG - chr2_2:56365130-56365149 Msa0259380:intron 35.0%
!! ATATACTGCTGTGTTTTTGC+AGG - chr2_2:56365268-56365287 Msa0259380:intron 35.0%
!! TATACTGCTGTGTTTTTGCA+GGG - chr2_2:56365269-56365288 Msa0259380:intron 35.0%
ACATCCTAATTGTCATCAAC+AGG + chr2_2:56365308-56365327 None:intergenic 35.0%
GAAAGTGAAGCCAAAATGAA+TGG - chr2_2:56365335-56365354 Msa0259380:intron 35.0%
CAATATTGTGAAGAACAGCA+TGG + chr2_2:56365385-56365404 None:intergenic 35.0%
CATGCTGTTCTTCACAATAT+TGG - chr2_2:56365383-56365402 Msa0259380:CDS 35.0%
TGCTGTTCTTCACAATATTG+GGG - chr2_2:56365385-56365404 Msa0259380:CDS 35.0%
TCTCTTAGTAGTTAGTGCAA+GGG + chr2_2:56365441-56365460 None:intergenic 35.0%
ATCTCTTAGTAGTTAGTGCA+AGG + chr2_2:56365442-56365461 None:intergenic 35.0%
!!! GCATCGTATTTTGAGATTCA+TGG + chr2_2:56365493-56365512 None:intergenic 35.0%
ACGATGCTTAAAATTGCAAG+TGG - chr2_2:56365506-56365525 Msa0259380:intron 35.0%
! GAGATTACTGACTATGGTTA+CGG - chr2_2:56365630-56365649 Msa0259380:five_prime_UTR 35.0%
!!! GAAGCTGGTTTTGTGGATTT+GGG + chr2_2:56360919-56360938 None:intergenic 40.0%
!!! TGAAGCTGGTTTTGTGGATT+TGG + chr2_2:56360920-56360939 None:intergenic 40.0%
!!! AGAAAGTGAAGCTGGTTTTG+TGG + chr2_2:56360926-56360945 None:intergenic 40.0%
GAGAAATGAGAAAGTGAAGC+TGG + chr2_2:56360934-56360953 None:intergenic 40.0%
!! GAATTGGTGAGGAAAGTGTT+AGG + chr2_2:56360982-56361001 None:intergenic 40.0%
AGAGAGAGTTTGAATTGGTG+AGG + chr2_2:56360993-56361012 None:intergenic 40.0%
GAGAGAGAGAGAGTTTGAAT+TGG + chr2_2:56360998-56361017 None:intergenic 40.0%
TTCAGTTCCATTTGAGCTTC+AGG - chr2_2:56361211-56361230 Msa0259380:three_prime_UTR 40.0%
!! GTGCTTTTAACCAGAAGTGT+CGG + chr2_2:56361455-56361474 None:intergenic 40.0%
TCAGTGTTGTATCTTGTGTC+TGG - chr2_2:56361548-56361567 Msa0259380:intron 40.0%
TTGTATCTTGTGTCTGGTGT+TGG - chr2_2:56361554-56361573 Msa0259380:CDS 40.0%
GTGTCTGCGGAATTATTTGA+AGG - chr2_2:56361816-56361835 Msa0259380:CDS 40.0%
CTGCGGAATTATTTGAAGGA+TGG - chr2_2:56361820-56361839 Msa0259380:CDS 40.0%
AAGGATGGTGAGATTCAAGA+TGG - chr2_2:56361835-56361854 Msa0259380:CDS 40.0%
TTGGGTCTGAGTTCAGAAAA+TGG - chr2_2:56361865-56361884 Msa0259380:CDS 40.0%
!!! ACATGTTTTGATGTCGGTGT+TGG - chr2_2:56362115-56362134 Msa0259380:CDS 40.0%
!! AAAGAAAAGCATCAAGGGAG+TGG + chr2_2:56362201-56362220 None:intergenic 40.0%
ACAATCCGGTTCTGTATATC+TGG + chr2_2:56362355-56362374 None:intergenic 40.0%
ACACTAGCAGGATAACAATC+CGG + chr2_2:56362369-56362388 None:intergenic 40.0%
!! TAACCGACTCACACACTTTT+GGG + chr2_2:56362460-56362479 None:intergenic 40.0%
!! ATAACCGACTCACACACTTT+TGG + chr2_2:56362461-56362480 None:intergenic 40.0%
CAAGCTCTTGAAAATCTTGG+TGG - chr2_2:56362571-56362590 Msa0259380:intron 40.0%
ATGACTATTATTGGTACGCG+AGG - chr2_2:56362772-56362791 Msa0259380:intron 40.0%
CTGATAATCAGGGGACAAAA+GGG + chr2_2:56362959-56362978 None:intergenic 40.0%
TCTGATAATCAGGGGACAAA+AGG + chr2_2:56362960-56362979 None:intergenic 40.0%
GTAGGTAACCAATGAATCTG+CGG - chr2_2:56363022-56363041 Msa0259380:CDS 40.0%
ATCAGAAACCGCAGATTCAT+TGG + chr2_2:56363033-56363052 None:intergenic 40.0%
TGCGGTTTCTGATGCTAAAT+GGG - chr2_2:56363040-56363059 Msa0259380:CDS 40.0%
!! CAGATGGTGGATTATCTTCA+GGG - chr2_2:56363075-56363094 Msa0259380:CDS 40.0%
CTTACCCTTATTCTCTTGTG+GGG - chr2_2:56363117-56363136 Msa0259380:CDS 40.0%
TTACCCTTATTCTCTTGTGG+GGG - chr2_2:56363118-56363137 Msa0259380:CDS 40.0%
TGAAGATGAAGATGAAGAGG+AGG - chr2_2:56363247-56363266 Msa0259380:CDS 40.0%
GGATGAAAGTGAAGATGAGT+TGG - chr2_2:56363274-56363293 Msa0259380:CDS 40.0%
AGCATTCCACTACTGTACTA+AGG - chr2_2:56363477-56363496 Msa0259380:CDS 40.0%
TTTCGTCCTTAGTACAGTAG+TGG + chr2_2:56363486-56363505 None:intergenic 40.0%
CTACTGTACTAAGGACGAAA+AGG - chr2_2:56363486-56363505 Msa0259380:CDS 40.0%
TCGTCTGTAAAGTTGTTGGT+TGG - chr2_2:56363537-56363556 Msa0259380:CDS 40.0%
! CGTCTGTAAAGTTGTTGGTT+GGG - chr2_2:56363538-56363557 Msa0259380:CDS 40.0%
GTTACCAGCTATTGTGTTGA+AGG - chr2_2:56363571-56363590 Msa0259380:intron 40.0%
!! TGATTTTTGCAGGTTGAACC+CGG - chr2_2:56363710-56363729 Msa0259380:intron 40.0%
!! TGACAAGAAAAGCATCAAGG+CGG + chr2_2:56363912-56363931 None:intergenic 40.0%
!! AGCTGACAAGAAAAGCATCA+AGG + chr2_2:56363915-56363934 None:intergenic 40.0%
TTTGCAAATTGGAATTGCCG+AGG - chr2_2:56364165-56364184 Msa0259380:intron 40.0%
! GTATGCTAGCTTAGAAGTCT+CGG - chr2_2:56364214-56364233 Msa0259380:intron 40.0%
ATAAGGGTGACATTGTGGTT+AGG + chr2_2:56364371-56364390 None:intergenic 40.0%
GTAGGTAACTCATGAATCTG+TGG - chr2_2:56364443-56364462 Msa0259380:intron 40.0%
TGTGGTTTCTGATGCTGAAT+GGG - chr2_2:56364461-56364480 Msa0259380:intron 40.0%
GTTGAAGATAATCCACCATC+AGG + chr2_2:56364498-56364517 None:intergenic 40.0%
!! AGAACATGGTTTGGTGTTGA+AGG + chr2_2:56364538-56364557 None:intergenic 40.0%
CTTACCCTTATTCTCTTGTG+GGG - chr2_2:56363117-56363136 Msa0259380:CDS 40.0%
ATCACTGTCAGAACCAACTT+CGG + chr2_2:56364655-56364674 None:intergenic 40.0%
TGAAGATGAAGATGAGGATG+AGG - chr2_2:56364686-56364705 Msa0259380:intron 40.0%
GATGAAGGTGAAGATGAGTT+TGG - chr2_2:56364708-56364727 Msa0259380:intron 40.0%
AGCATTCAACTGCTGTACTA+AGG - chr2_2:56364910-56364929 Msa0259380:intron 40.0%
TGTTCTTCACAATATTGGGG+AGG - chr2_2:56365388-56365407 Msa0259380:CDS 40.0%
ATGAAAGTGATACTTACCGG+TGG - chr2_2:56365593-56365612 Msa0259380:five_prime_UTR 40.0%
TGAAAGTGATACTTACCGGT+GGG - chr2_2:56365594-56365613 Msa0259380:five_prime_UTR 40.0%
GCATGATCCTGAAGCTCAAA+TGG + chr2_2:56361221-56361240 None:intergenic 45.0%
!! CTACCTATGAAGCACTGACA+CGG - chr2_2:56362024-56362043 Msa0259380:CDS 45.0%
!! CGTGTTTGGTGTATACGTGT+TGG + chr2_2:56362144-56362163 None:intergenic 45.0%
!! CTTTTGATGGTAGGCGTGTT+TGG + chr2_2:56362158-56362177 None:intergenic 45.0%
! ACGCCTACCATCAAAAGTGT+CGG - chr2_2:56362161-56362180 Msa0259380:intron 45.0%
!!! TGTAGCACCGACACTTTTGA+TGG + chr2_2:56362171-56362190 None:intergenic 45.0%
! AGACCCAAAAGTGTGTGAGT+CGG - chr2_2:56362454-56362473 Msa0259380:intron 45.0%
! GTGAATCGTTTTCCAGAGGT+TGG - chr2_2:56362687-56362706 Msa0259380:intron 45.0%
ATAATCAGGGGACAAAAGGG+TGG + chr2_2:56362956-56362975 None:intergenic 45.0%
CTGCGGTTTCTGATGCTAAA+TGG - chr2_2:56363039-56363058 Msa0259380:CDS 45.0%
TGGGTTTGCAAAAGTCCAGA+TGG - chr2_2:56363059-56363078 Msa0259380:CDS 45.0%
GTTTGCAAAAGTCCAGATGG+TGG - chr2_2:56363062-56363081 Msa0259380:CDS 45.0%
CCTGAAGATAATCCACCATC+TGG + chr2_2:56363077-56363096 None:intergenic 45.0%
!! CCAGATGGTGGATTATCTTC+AGG - chr2_2:56363074-56363093 Msa0259380:CDS 45.0%
!! ATGGTGGATTATCTTCAGGG+TGG - chr2_2:56363078-56363097 Msa0259380:CDS 45.0%
CATCCCCCACAAGAGAATAA+GGG + chr2_2:56363124-56363143 None:intergenic 45.0%
TCATCCCCCACAAGAGAATA+AGG + chr2_2:56363125-56363144 None:intergenic 45.0%
TTATTCTCTTGTGGGGGATG+AGG - chr2_2:56363124-56363143 Msa0259380:CDS 45.0%
! CATCGGGAGCTAAGAACTTT+TGG + chr2_2:56363199-56363218 None:intergenic 45.0%
AAGTTCTTAGCTCCCGATGT+TGG - chr2_2:56363200-56363219 Msa0259380:CDS 45.0%
ATCGCTGTCAGAACCAACAT+CGG + chr2_2:56363216-56363235 None:intergenic 45.0%
TGAAGATGAAGAGGAGGATG+AGG - chr2_2:56363253-56363272 Msa0259380:CDS 45.0%
! AAAGTGTTCGCTGAAGATGC+TGG - chr2_2:56363341-56363360 Msa0259380:CDS 45.0%
TTATGTCAGGAATGGGGAAC+TGG - chr2_2:56364298-56364317 Msa0259380:intron 45.0%
TATGTCAGGAATGGGGAACT+GGG - chr2_2:56364299-56364318 Msa0259380:intron 45.0%
TGAAGTGATAAGGTGGTCGA+GGG + chr2_2:56364332-56364351 None:intergenic 45.0%
GGGATATAAGGGTGACATTG+TGG + chr2_2:56364376-56364395 None:intergenic 45.0%
CTGTGGTTTCTGATGCTGAA+TGG - chr2_2:56364460-56364479 Msa0259380:intron 45.0%
TGGGTTTGCAAAAGTCCTGA+TGG - chr2_2:56364480-56364499 Msa0259380:intron 45.0%
GTTTGCAAAAGTCCTGATGG+TGG - chr2_2:56364483-56364502 Msa0259380:intron 45.0%
TTCAACAACTTCAGGATGGC+CGG - chr2_2:56364512-56364531 Msa0259380:intron 45.0%
CGTTCCCCACAAGAGAATAA+GGG + chr2_2:56364563-56364582 None:intergenic 45.0%
TCGTTCCCCACAAGAGAATA+AGG + chr2_2:56364564-56364583 None:intergenic 45.0%
TTATTCTCTTGTGGGGAACG+AGG - chr2_2:56364563-56364582 Msa0259380:intron 45.0%
! CTTCGGGAGCTAAGAACTTT+TGG + chr2_2:56364638-56364657 None:intergenic 45.0%
AAGTTCTTAGCTCCCGAAGT+TGG - chr2_2:56364639-56364658 Msa0259380:intron 45.0%
TCACTGTCAGAACCAACTTC+GGG + chr2_2:56364654-56364673 None:intergenic 45.0%
!! AGTTGGTTCTGACAGTGATG+AGG - chr2_2:56364656-56364675 Msa0259380:intron 45.0%
GAAGATGAGGATGAGGATGA+AGG - chr2_2:56364693-56364712 Msa0259380:intron 45.0%
!! TTGCTGAAGATGTTGGCTTG+AGG - chr2_2:56364781-56364800 Msa0259380:intron 45.0%
!! TGCTGAAGATGTTGGCTTGA+GGG - chr2_2:56364782-56364801 Msa0259380:intron 45.0%
CTGCTGTACTAAGGACGAAA+AGG - chr2_2:56364919-56364938 Msa0259380:intron 45.0%
! AGCAGCTTCAAGGAAGCTTT+TGG - chr2_2:56365040-56365059 Msa0259380:intron 45.0%
! AGGAGCTTGTTTGCAGTCTT+AGG - chr2_2:56365408-56365427 Msa0259380:CDS 45.0%
! CACGGTGAGATTACTGACTA+TGG - chr2_2:56365624-56365643 Msa0259380:five_prime_UTR 45.0%
TCTCCGTGTCAGTGCTTCAT+AGG + chr2_2:56362030-56362049 None:intergenic 50.0%
CACAGTGTCTGTGTCATGTC+TGG + chr2_2:56362053-56362072 None:intergenic 50.0%
TGACACAGACACTGTGACAC+CGG - chr2_2:56362057-56362076 Msa0259380:CDS 50.0%
!! GCACCGACACTTTTGATGGT+AGG + chr2_2:56362167-56362186 None:intergenic 50.0%
AAAAGGGTGGCTTCGTGGTT+GGG + chr2_2:56362943-56362962 None:intergenic 50.0%
GGGGGATGAGGAAGCAATTA+TGG - chr2_2:56363136-56363155 Msa0259380:CDS 50.0%
TCGCTGTCAGAACCAACATC+GGG + chr2_2:56363215-56363234 None:intergenic 50.0%
GAAAAGGATGCGAGCTCACA+GGG - chr2_2:56363502-56363521 Msa0259380:CDS 50.0%
ATTCCTCCTCAACAGCTTCG+AGG - chr2_2:56363600-56363619 Msa0259380:intron 50.0%
TTCCTCCTCAACAGCTTCGA+GGG - chr2_2:56363601-56363620 Msa0259380:intron 50.0%
! AACAGCTTCGAGGGAGCTTT+TGG - chr2_2:56363610-56363629 Msa0259380:intron 50.0%
ATGTCAGGAATGGGGAACTG+GGG - chr2_2:56364300-56364319 Msa0259380:intron 50.0%
GTGAAGTGATAAGGTGGTCG+AGG + chr2_2:56364333-56364352 None:intergenic 50.0%
GGGTGACATTGTGGTTAGGA+CGG + chr2_2:56364367-56364386 None:intergenic 50.0%
!! CATGGTTTGGTGTTGAAGGC+CGG + chr2_2:56364534-56364553 None:intergenic 50.0%
GAAAAGGAAGCGAGCTCACA+GGG - chr2_2:56364935-56364954 Msa0259380:intron 50.0%
TGGATTCCTCAGCAGCTTCA+AGG - chr2_2:56365030-56365049 Msa0259380:intron 50.0%
AAGCTTCCTTGAAGCTGCTG+AGG + chr2_2:56365039-56365058 None:intergenic 50.0%
!! CTTTGTGGCACCGACACTTC+TGG - chr2_2:56361442-56361461 Msa0259380:CDS 55.0%
AAAGGGTGGCTTCGTGGTTG+GGG + chr2_2:56362942-56362961 None:intergenic 55.0%
CAAAAGGGTGGCTTCGTGGT+TGG + chr2_2:56362944-56362963 None:intergenic 55.0%
!! TCGCTGAAGATGCTGGCTTG+AGG - chr2_2:56363348-56363367 Msa0259380:CDS 55.0%
CGAAAAGGATGCGAGCTCAC+AGG - chr2_2:56363501-56363520 Msa0259380:CDS 55.0%
AAGCTCCCTCGAAGCTGTTG+AGG + chr2_2:56363609-56363628 None:intergenic 55.0%
! ACTCGCAGCAGCAGGTTTTC+CGG + chr2_2:56363732-56363751 None:intergenic 55.0%
TCAACATCACTCGCAGCAGC+AGG + chr2_2:56363740-56363759 None:intergenic 55.0%
CGAAAAGGAAGCGAGCTCAC+AGG - chr2_2:56364934-56364953 Msa0259380:intron 55.0%
ATTCGCAGCCGCAGGTTTCT+CGG + chr2_2:56365162-56365181 None:intergenic 55.0%
TCAACATCATTCGCAGCCGC+AGG + chr2_2:56365170-56365189 None:intergenic 55.0%
TTACCGGTGGGAATGCGACA+CGG - chr2_2:56365606-56365625 Msa0259380:five_prime_UTR 55.0%
GGGACAAAAGGGTGGCTTCG+TGG + chr2_2:56362948-56362967 None:intergenic 60.0%
CTCCCTCGAAGCTGTTGAGG+AGG + chr2_2:56363606-56363625 None:intergenic 60.0%
! CTCGCAGCAGCAGGTTTTCC+GGG + chr2_2:56363731-56363750 None:intergenic 60.0%
GGCTGAACCCGAGAAACCTG+CGG - chr2_2:56365151-56365170 Msa0259380:intron 60.0%
TTCGCAGCCGCAGGTTTCTC+GGG + chr2_2:56365161-56365180 None:intergenic 60.0%
TCACCGTGTCGCATTCCCAC+CGG + chr2_2:56365612-56365631 None:intergenic 60.0%
GGGGCGGGGGAGTTAAGAAG+TGG + chr2_2:56362923-56362942 None:intergenic 65.0%
TGGCTTCGTGGTTGGGGCGG+GGG + chr2_2:56362936-56362955 None:intergenic 70.0%
GTGGCTTCGTGGTTGGGGCG+GGG + chr2_2:56362937-56362956 None:intergenic 70.0%
GGTGGCTTCGTGGTTGGGGC+GGG + chr2_2:56362938-56362957 None:intergenic 70.0%
GGGTGGCTTCGTGGTTGGGG+CGG + chr2_2:56362939-56362958 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 56360915 56365700 56360915 ID=Msa0259380;Name=Msa0259380
chr2_2 mRNA 56360915 56365700 56360915 ID=Msa0259380-mRNA-1;Parent=Msa0259380;Name=Msa0259380-mRNA-1;_AED=0.11;_eAED=0.11;_QI=108|1|0.87|1|0.85|0.87|8|414|504
chr2_2 exon 56360915 56361325 56360915 ID=Msa0259380-mRNA-1:exon:17056;Parent=Msa0259380-mRNA-1
chr2_2 exon 56361416 56361463 56361416 ID=Msa0259380-mRNA-1:exon:17055;Parent=Msa0259380-mRNA-1
chr2_2 exon 56361554 56362168 56361554 ID=Msa0259380-mRNA-1:exon:17054;Parent=Msa0259380-mRNA-1
chr2_2 exon 56362846 56362893 56362846 ID=Msa0259380-mRNA-1:exon:17053;Parent=Msa0259380-mRNA-1
chr2_2 exon 56362984 56363589 56362984 ID=Msa0259380-mRNA-1:exon:17052;Parent=Msa0259380-mRNA-1
chr2_2 exon 56364712 56364777 56364712 ID=Msa0259380-mRNA-1:exon:17051;Parent=Msa0259380-mRNA-1
chr2_2 exon 56365347 56365454 56365347 ID=Msa0259380-mRNA-1:exon:17050;Parent=Msa0259380-mRNA-1
chr2_2 exon 56365566 56365700 56365566 ID=Msa0259380-mRNA-1:exon:17049;Parent=Msa0259380-mRNA-1
chr2_2 five_prime_UTR 56365593 56365700 56365593 ID=Msa0259380-mRNA-1:five_prime_utr;Parent=Msa0259380-mRNA-1
chr2_2 CDS 56365566 56365592 56365566 ID=Msa0259380-mRNA-1:cds;Parent=Msa0259380-mRNA-1
chr2_2 CDS 56365347 56365454 56365347 ID=Msa0259380-mRNA-1:cds;Parent=Msa0259380-mRNA-1
chr2_2 CDS 56364712 56364777 56364712 ID=Msa0259380-mRNA-1:cds;Parent=Msa0259380-mRNA-1
chr2_2 CDS 56362984 56363589 56362984 ID=Msa0259380-mRNA-1:cds;Parent=Msa0259380-mRNA-1
chr2_2 CDS 56362846 56362893 56362846 ID=Msa0259380-mRNA-1:cds;Parent=Msa0259380-mRNA-1
chr2_2 CDS 56361554 56362168 56361554 ID=Msa0259380-mRNA-1:cds;Parent=Msa0259380-mRNA-1
chr2_2 CDS 56361419 56361463 56361419 ID=Msa0259380-mRNA-1:cds;Parent=Msa0259380-mRNA-1
chr2_2 three_prime_UTR 56361416 56361418 56361416 ID=Msa0259380-mRNA-1:three_prime_utr;Parent=Msa0259380-mRNA-1
chr2_2 three_prime_UTR 56360915 56361325 56360915 ID=Msa0259380-mRNA-1:three_prime_utr;Parent=Msa0259380-mRNA-1
Gene Sequence

>Msa0259380

ATGAAGATTACTGAATCATCATCTGAGAACAATGCTGATGCTGGAAATGATTTTACCCTTAAACCCAATGATAATGATTCAGTTCCATTTGAGCTTCAGGATCATGCAGAAGAGCTTCAACAAACTGTTACTAAGGATGGTGAGATTCAAGATGGAAAAACATTGGGTCTGAGTTCAGAAAATGGAAGAGAATTAGTTGAGGTAACCAATGAATCTGCGGTTTCTGATGCTAAATGGGTTTGCAAAAGTCCAGATGGTGGATTATCTTCAGGGTGGAACAATAAACCATGTTCTTACCCTTATTCTCTTGTGGGGGATGAGGAAGCAATTATGGCAGTTTTACACTTACAGCACAACGCAATAGAAGCTTGCCAAAAGTTCTTAGCTCCCGATGTTGGTTCTGACAGCGATGATGATGTTATTGAAGATGAAGATGAAGAGGAGGATGAGGATGAAAGTGAAGATGAGTTGGTAGAAAATTGTGAAGAAGAATCTAAAGAGTATAGATTCTTTGAGAAAGTGTTCGCTGAAGATGCTGGCTTGAGGAAATATTACGAGAACAATAGTAAACAAGGAGATTTTTATTGTTTGGTTTGTGGTGGTGTTAAGAAGAAAATGTGGAAGAGGTTTAAGGATTGTGTTGCACTGATTCAGCATTCCACTACTGTACTAAGGACGAAAAGGATGCGAGCTCACAGGGCTTATGCACAAATCGTCTGTAAAGTTGTTGGTTGGGACATTAATCAGTTACCAGCTATTGTGTTGAAGGATTTGAATTCCTCCTCAACAGCTTCGAGGGAGCTTTTGGTTGAACCCGGAAAACCTGCTGCTGCGAGTGATGTTGATGACCGAAATGTAACTCATGAATCTGTGGTTTCTGATGCTGAATGGGTTTGCAAAAGTCCTGATGGTGGATTATCTTCAACAACTTCAGGATGGCCGGCCTTCAACACCAAACCATGTTCTTACCCTTATTCTCTTGTGGGGAACGAGGAAGCGATTATGTCAGTTTTGCATTTGCAGCACAATGCAATAGATGCTTGCCAAAAGTTCTTAGCTCCCGAAGTTGGTTCTGACAGTGATGAGGATGTTATTGAAGATGAAGATGAGGATGAGGATGAAGGTGAAGATGAGTTTGGAGAAAATTGTGATGAAGAATCTGAACAGTATAAGTTCTTTGAGAAAGTGTTTGCTGAAGATGTTGGCTTGAGGGAATACTACGAGAACAATAGTAAAAAAGGAGATTTTTATTGTTTGGTTTGTGGTGGTGTTAAGAAGAAAATGTGGAAGAGGTTTAAGGATTGTGTTGCACTGATTCAGCATTCAACTGCTGTACTAAGGACGAAAAGGAAGCGAGCTCACAGGGCTTATGCACAAGTCGTCTGTAAAATTGTTGGTTGGGACATTAAACAGTTACCAACTATTGTGTTGAAGGATTTGGATTCCTCAGCAGCTTCAAGGAAGCTTTTGGCTGAACCCGAGAAACCTGCGGCTGCGAATGATGTTGATGATTGA

Protein sequence

>Msa0259380

MKITESSSENNADAGNDFTLKPNDNDSVPFELQDHAEELQQTVTKDGEIQDGKTLGLSSENGRELVEVTNESAVSDAKWVCKSPDGGLSSGWNNKPCSYPYSLVGDEEAIMAVLHLQHNAIEACQKFLAPDVGSDSDDDVIEDEDEEEDEDESEDELVENCEEESKEYRFFEKVFAEDAGLRKYYENNSKQGDFYCLVCGGVKKKMWKRFKDCVALIQHSTTVLRTKRMRAHRAYAQIVCKVVGWDINQLPAIVLKDLNSSSTASRELLVEPGKPAAASDVDDRNVTHESVVSDAEWVCKSPDGGLSSTTSGWPAFNTKPCSYPYSLVGNEEAIMSVLHLQHNAIDACQKFLAPEVGSDSDEDVIEDEDEDEDEGEDEFGENCDEESEQYKFFEKVFAEDVGLREYYENNSKKGDFYCLVCGGVKKKMWKRFKDCVALIQHSTAVLRTKRKRAHRAYAQVVCKIVGWDIKQLPTIVLKDLDSSAASRKLLAEPEKPAAANDVDD*