Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219110 | XP_003596828.1 | 81.754 | 285 | 7 | 5 | 1 | 260 | 1 | 265 | 1.36e-136 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219110 | sp|Q9ZQH1|CML48_ARATH | 45.596 | 193 | 78 | 4 | 95 | 260 | 36 | 228 | 2.81e-50 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219110 | G7ITU0 | 81.754 | 285 | 7 | 5 | 1 | 260 | 1 | 265 | 6.50e-137 | 395 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009210 | Msa0219110 | -0.809093 | 2.243589e-50 | -8.615850e-47 |
| Msa0012460 | Msa0219110 | -0.810682 | 1.020978e-50 | -8.615850e-47 |
| Msa0036620 | Msa0219110 | -0.805418 | 1.348037e-49 | -8.615850e-47 |
| Msa0061320 | Msa0219110 | -0.808433 | 3.104795e-50 | -8.615850e-47 |
| Msa0091480 | Msa0219110 | -0.805848 | 1.094830e-49 | -8.615850e-47 |
| Msa0115010 | Msa0219110 | -0.813034 | 3.139427e-51 | -8.615850e-47 |
| Msa0140530 | Msa0219110 | 0.803046 | 4.201903e-49 | -8.615850e-47 |
| Msa0144340 | Msa0219110 | -0.816648 | 4.962513e-52 | -8.615850e-47 |
| Msa0152380 | Msa0219110 | -0.810235 | 1.275029e-50 | -8.615850e-47 |
| Msa0164540 | Msa0219110 | -0.800575 | 1.351587e-48 | -8.615850e-47 |
| Msa0219110 | Msa0242290 | -0.814115 | 1.815314e-51 | -8.615850e-47 |
| Msa0219110 | Msa0247310 | -0.806229 | 9.103839e-50 | -8.615850e-47 |
| Msa0219110 | Msa0261440 | -0.819390 | 1.191008e-52 | -8.615850e-47 |
| Msa0219110 | Msa0269830 | -0.800841 | 1.192593e-48 | -8.615850e-47 |
| Msa0219110 | Msa0296930 | 0.809809 | 1.574558e-50 | -8.615850e-47 |
| Msa0219110 | Msa0305340 | 0.810940 | 8.975699e-51 | -8.615850e-47 |
| Msa0219110 | Msa0327900 | -0.806771 | 6.998040e-50 | -8.615850e-47 |
| Msa0219110 | Msa0365110 | -0.807258 | 5.518154e-50 | -8.615850e-47 |
| Msa0219110 | Msa0373220 | -0.801918 | 7.178183e-49 | -8.615850e-47 |
| Msa0219110 | Msa0380520 | -0.800173 | 1.631930e-48 | -8.615850e-47 |
| Msa0219110 | Msa0399180 | -0.804873 | 1.752949e-49 | -8.615850e-47 |
| Msa0219110 | Msa0430020 | -0.812760 | 3.604026e-51 | -8.615850e-47 |
| Msa0219110 | Msa0444340 | -0.802183 | 6.332035e-49 | -8.615850e-47 |
| Msa0219110 | Msa0466070 | -0.808870 | 2.504526e-50 | -8.615850e-47 |
| Msa0219110 | Msa0468020 | -0.806165 | 9.391848e-50 | -8.615850e-47 |
| Msa0219110 | Msa0480150 | -0.800221 | 1.595574e-48 | -8.615850e-47 |
| Msa0219110 | Msa0600390 | -0.819180 | 1.330044e-52 | -8.615850e-47 |
| Msa0219110 | Msa0629980 | -0.800606 | 1.331824e-48 | -8.615850e-47 |
| Msa0219110 | Msa0640880 | -0.811949 | 5.420823e-51 | -8.615850e-47 |
| Msa0219110 | Msa0703760 | -0.804530 | 2.066814e-49 | -8.615850e-47 |
| Msa0219110 | Msa0717270 | -0.819909 | 9.066364e-53 | -8.615850e-47 |
| Msa0219110 | Msa0752290 | -0.801646 | 8.160058e-49 | -8.615850e-47 |
| Msa0219110 | Msa0881050 | -0.807001 | 6.256049e-50 | -8.615850e-47 |
| Msa0219110 | Msa0972730 | -0.802018 | 6.843976e-49 | -8.615850e-47 |
| Msa0219110 | Msa1022310 | -0.813014 | 3.171052e-51 | -8.615850e-47 |
| Msa0219110 | Msa1027790 | -0.801717 | 7.892874e-49 | -8.615850e-47 |
| Msa0219110 | Msa1061180 | -0.810590 | 1.068750e-50 | -8.615850e-47 |
| Msa0219110 | Msa1067430 | -0.801986 | 6.951120e-49 | -8.615850e-47 |
| Msa0219110 | Msa1079220 | 0.820500 | 6.639104e-53 | -8.615850e-47 |
| Msa0219110 | Msa1106560 | -0.816816 | 4.550702e-52 | -8.615850e-47 |
| Msa0219110 | Msa1149760 | -0.810835 | 9.458884e-51 | -8.615850e-47 |
| Msa0219110 | Msa1208750 | -0.804846 | 1.775687e-49 | -8.615850e-47 |
| Msa0219110 | Msa1222390 | -0.818890 | 1.547738e-52 | -8.615850e-47 |
| Msa0219110 | Msa1309100 | -0.814579 | 1.434035e-51 | -8.615850e-47 |
| Msa0219110 | Msa1344430 | -0.811237 | 7.740865e-51 | -8.615850e-47 |
| Msa0219110 | Msa1355860 | -0.802560 | 5.294451e-49 | -8.615850e-47 |
| Msa0219110 | Msa1405770 | -0.801163 | 1.024799e-48 | -8.615850e-47 |
| Msa0219110 | Msa1406550 | -0.819343 | 1.220456e-52 | -8.615850e-47 |
| Msa0219110 | Msa1412520 | -0.804753 | 1.856878e-49 | -8.615850e-47 |
| Msa0219110 | Msa1415250 | -0.805059 | 1.602758e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219110 | MtrunA17_Chr2g0321531 | 81.754 | 285 | 7 | 5 | 1 | 260 | 1 | 265 | 1.25e-140 | 395 |
| Msa0219110 | MtrunA17_Chr1g0172721 | 40.569 | 281 | 124 | 7 | 11 | 258 | 35 | 305 | 1.58e-51 | 170 |
| Msa0219110 | MtrunA17_Chr2g0333891 | 44.000 | 100 | 56 | 0 | 158 | 257 | 21 | 120 | 9.32e-25 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219110 | AT2G27480.1 | 45.596 | 193 | 78 | 4 | 95 | 260 | 36 | 228 | 2.85e-51 | 167 |
| Msa0219110 | AT3G10300.3 | 46.369 | 179 | 69 | 3 | 105 | 258 | 159 | 335 | 4.43e-47 | 160 |
| Msa0219110 | AT5G04170.1 | 46.369 | 179 | 69 | 4 | 105 | 258 | 178 | 354 | 5.89e-46 | 157 |
| Msa0219110 | AT3G10300.6 | 42.683 | 164 | 66 | 4 | 86 | 224 | 141 | 301 | 1.45e-30 | 117 |
| Msa0219110 | AT2G27480.2 | 41.060 | 151 | 62 | 4 | 95 | 218 | 36 | 186 | 2.16e-28 | 107 |
| Msa0219110 | AT3G10300.4 | 43.885 | 139 | 51 | 3 | 105 | 218 | 159 | 295 | 2.84e-28 | 110 |
| Msa0219110 | AT3G10300.2 | 43.885 | 139 | 51 | 3 | 105 | 218 | 159 | 295 | 3.67e-28 | 110 |
| Msa0219110 | AT3G10300.5 | 43.571 | 140 | 51 | 3 | 105 | 218 | 159 | 296 | 6.33e-28 | 109 |
| Msa0219110 | AT3G10300.1 | 61.111 | 54 | 21 | 0 | 105 | 158 | 159 | 212 | 5.21e-17 | 78.2 |
Find 88 sgRNAs with CRISPR-Local
Find 353 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCTCCTCCTTCTTTATC+TGG | 0.126086 | 2_1:-66634915 | Msa0219110:CDS |
| GTTGGGTGTAGTTGGCATTT+TGG | 0.174857 | 2_1:+66635087 | None:intergenic |
| GGGTTTGACCGACAAGTTTA+AGG | 0.213704 | 2_1:-66630933 | Msa0219110:CDS |
| ATAAAAGTTTACCAATTCTA+AGG | 0.242914 | 2_1:+66634682 | None:intergenic |
| TCCGCACAAGTTTCTTCATC+TGG | 0.252335 | 2_1:-66634984 | Msa0219110:CDS |
| TATCCTCCTTCTTCTTCATC+TGG | 0.260303 | 2_1:-66634939 | Msa0219110:CDS |
| CCTCCTTCCTCTTCTTCCTC+TGG | 0.280330 | 2_1:-66634888 | Msa0219110:CDS |
| AAATAAGCAATGTAATAAAT+TGG | 0.281619 | 2_1:-66630657 | Msa0219110:three_prime_UTR |
| ATAACATCTTGGTTTGTTCC+TGG | 0.294153 | 2_1:+66634849 | None:intergenic |
| ACTTTGATTGAGCAATAATA+AGG | 0.304412 | 2_1:-66630705 | Msa0219110:three_prime_UTR |
| TTATGACGACTTTATGTCTA+TGG | 0.317693 | 2_1:-66630873 | Msa0219110:CDS |
| TTAGAAGGTGGTGGTAATTC+AGG | 0.319315 | 2_1:+66635125 | None:intergenic |
| AAACACGAGATGGAAGTTTC+TGG | 0.328368 | 2_1:+66635321 | None:intergenic |
| GGGTACATTTCATCTTCATC+TGG | 0.330634 | 2_1:-66634963 | Msa0219110:CDS |
| AGAGCATCTCTTAGCTCTAA+TGG | 0.341334 | 2_1:+66632189 | None:intergenic |
| GTCCTTATCCTTAAACTTGT+CGG | 0.343314 | 2_1:+66630925 | None:intergenic |
| AGTATAGTGATGGAAATAAT+AGG | 0.346493 | 2_1:-66632113 | Msa0219110:CDS |
| TTGGGTGTAGTTGTTGTAAG+AGG | 0.371738 | 2_1:+66635055 | None:intergenic |
| CTGTGTAGGTTCGATTTGAT+TGG | 0.372064 | 2_1:+66635209 | None:intergenic |
| TTGAAGAAGGAGGTGGAGGT+TGG | 0.383615 | 2_1:+66635036 | None:intergenic |
| GAAAGCTTCTTATAACATCT+TGG | 0.384809 | 2_1:+66634838 | None:intergenic |
| CTCCTTCCTCTTCTTCCTCT+GGG | 0.391925 | 2_1:-66634887 | Msa0219110:CDS |
| ACAACTTCTAGATAATGTTT+AGG | 0.399823 | 2_1:+66630586 | None:intergenic |
| ATCCTCCTCCTTCTTTATCT+GGG | 0.404046 | 2_1:-66634914 | Msa0219110:CDS |
| TTGTTGTAAGAGGGAGGTGG+GGG | 0.408137 | 2_1:+66635065 | None:intergenic |
| CCTCATGAATCCCTTAGAAT+TGG | 0.411265 | 2_1:-66634693 | Msa0219110:intron |
| TATGTTTCAGCACTGGATTA+TGG | 0.413638 | 2_1:-66630524 | Msa0219110:three_prime_UTR |
| GAGATGGAAGTTTCTGGTTC+AGG | 0.413788 | 2_1:+66635327 | None:intergenic |
| GACCGACAAGTTTAAGGATA+AGG | 0.431091 | 2_1:-66630927 | Msa0219110:CDS |
| AGAGATGCTCTGTATGGTAT+TGG | 0.434190 | 2_1:-66632177 | Msa0219110:CDS |
| ATCCTCCTTCTTCTTCATCT+GGG | 0.435367 | 2_1:-66634938 | Msa0219110:CDS |
| AGTTGTTGTAAGAGGGAGGT+GGG | 0.447866 | 2_1:+66635063 | None:intergenic |
| TGAAGAAGGAGGTGGAGGTT+GGG | 0.454115 | 2_1:+66635037 | None:intergenic |
| TGGTTGTTGTAGTTTGAAGA+AGG | 0.459102 | 2_1:+66635023 | None:intergenic |
| TAGTTTGAAGAAGGAGGTGG+AGG | 0.459451 | 2_1:+66635032 | None:intergenic |
| TAGTTGTTGTAAGAGGGAGG+TGG | 0.461861 | 2_1:+66635062 | None:intergenic |
| GTTGTTGTAAGAGGGAGGTG+GGG | 0.465353 | 2_1:+66635064 | None:intergenic |
| CTGCCGTAGGAAGACATTGA+TGG | 0.474877 | 2_1:+66635179 | None:intergenic |
| GAGGTGTAGTTAGAATTAGA+AGG | 0.476031 | 2_1:+66635110 | None:intergenic |
| TGTGCGGAAGGGTAATTATG+AGG | 0.476275 | 2_1:+66634999 | None:intergenic |
| TGGGTGTAGTTGTTGTAAGA+GGG | 0.478191 | 2_1:+66635056 | None:intergenic |
| TTGTAGTTTGAAGAAGGAGG+TGG | 0.479430 | 2_1:+66635029 | None:intergenic |
| AGAGAGTTATGTTTCAGCAC+TGG | 0.489208 | 2_1:-66630531 | Msa0219110:three_prime_UTR |
| CCGCACAAGTTTCTTCATCT+GGG | 0.491481 | 2_1:-66634983 | Msa0219110:CDS |
| GGTACATTTCATCTTCATCT+GGG | 0.495434 | 2_1:-66634962 | Msa0219110:CDS |
| TAAAAGTTTACCAATTCTAA+GGG | 0.502211 | 2_1:+66634683 | None:intergenic |
| GGATAAGGACAAGCGTTACT+CGG | 0.509599 | 2_1:-66630912 | Msa0219110:CDS |
| TGTTATAAGAAGCTTTCAAA+TGG | 0.514368 | 2_1:-66634832 | Msa0219110:CDS |
| GAGCTAAGAGATGCTCTGTA+TGG | 0.522002 | 2_1:-66632183 | Msa0219110:CDS |
| CTGCTTTCAAAGTATAGTGA+TGG | 0.528696 | 2_1:-66632123 | Msa0219110:CDS |
| TGAATACCCAGAGGAAGAAG+AGG | 0.538557 | 2_1:+66634881 | None:intergenic |
| CAGAGGAAGAAGAGGAAGGA+GGG | 0.540353 | 2_1:+66634889 | None:intergenic |
| TAGTTAGAATTAGAAGGTGG+TGG | 0.541873 | 2_1:+66635116 | None:intergenic |
| GGTGGTAATTCAGGTGCAGA+TGG | 0.544455 | 2_1:+66635134 | None:intergenic |
| TGCCGTAGGAAGACATTGAT+GGG | 0.548448 | 2_1:+66635180 | None:intergenic |
| GGATACCCAGATGAAGAAGA+AGG | 0.548592 | 2_1:+66634933 | None:intergenic |
| ACATCTTGGTTTGTTCCTGG+TGG | 0.550371 | 2_1:+66634852 | None:intergenic |
| CTCCCATCAATGTCTTCCTA+CGG | 0.551213 | 2_1:-66635182 | Msa0219110:exon |
| GTGTAGTTGTTGTAAGAGGG+AGG | 0.553993 | 2_1:+66635059 | None:intergenic |
| AGAAGTTGTAGAACTGAGGC+TGG | 0.554277 | 2_1:+66632144 | None:intergenic |
| GATAAGGACAAGCGTTACTC+GGG | 0.563153 | 2_1:-66630911 | Msa0219110:CDS |
| GATGAAGAAACTTGTGCGGA+AGG | 0.568326 | 2_1:+66634987 | None:intergenic |
| TAATCATAAGATACAAGAAA+CGG | 0.568939 | 2_1:+66630845 | None:intergenic |
| CGGAAGGGTAATTATGAGGG+TGG | 0.569464 | 2_1:+66635003 | None:intergenic |
| ATAGTGATGGAAATAATAGG+AGG | 0.578495 | 2_1:-66632110 | Msa0219110:CDS |
| GGAGGGTACCCAGATAAAGA+AGG | 0.584713 | 2_1:+66634906 | None:intergenic |
| AAGAGAAAAGAAACACGAGA+TGG | 0.592254 | 2_1:+66635311 | None:intergenic |
| GTGTAGTTAGAATTAGAAGG+TGG | 0.599375 | 2_1:+66635113 | None:intergenic |
| TACCCAGATAAAGAAGGAGG+AGG | 0.599846 | 2_1:+66634912 | None:intergenic |
| CCAGAGGAAGAAGAGGAAGG+AGG | 0.607455 | 2_1:+66634888 | None:intergenic |
| ATGAAGAAACTTGTGCGGAA+GGG | 0.612512 | 2_1:+66634988 | None:intergenic |
| TAGTGATGGAAATAATAGGA+GGG | 0.617892 | 2_1:-66632109 | Msa0219110:CDS |
| TTGAGAATTGTATCTGCCGT+AGG | 0.621334 | 2_1:+66635166 | None:intergenic |
| AATAATAGGAGGGTTGAACT+CGG | 0.622363 | 2_1:-66632099 | Msa0219110:CDS |
| GTGCGGAAGGGTAATTATGA+GGG | 0.624241 | 2_1:+66635000 | None:intergenic |
| TTATCTAGAAGTTGTGCATG+AGG | 0.628564 | 2_1:-66630578 | Msa0219110:three_prime_UTR |
| CCAATTCTAAGGGATTCATG+AGG | 0.632264 | 2_1:+66634693 | None:intergenic |
| TACCCAGAGGAAGAAGAGGA+AGG | 0.638048 | 2_1:+66634885 | None:intergenic |
| AGATACGACAAAGATAGGAG+TGG | 0.640039 | 2_1:-66632222 | Msa0219110:intron |
| TTGATGGGAGATAACTGTGT+AGG | 0.640428 | 2_1:+66635195 | None:intergenic |
| TTGTTGTAGTTTGAAGAAGG+AGG | 0.649391 | 2_1:+66635026 | None:intergenic |
| GGGTACCCAGATAAAGAAGG+AGG | 0.653912 | 2_1:+66634909 | None:intergenic |
| CCCAGATGAAGAAACTTGTG+CGG | 0.673742 | 2_1:+66634983 | None:intergenic |
| AAGCAGAAGTTGTAGAACTG+AGG | 0.693684 | 2_1:+66632140 | None:intergenic |
| TACCCAGATGAAGAAGAAGG+AGG | 0.696718 | 2_1:+66634936 | None:intergenic |
| CAGGTGTGGGATGATTATCA+AGG | 0.700374 | 2_1:-66631475 | Msa0219110:intron |
| ATGGTAGATAGAGATCGAAG+TGG | 0.721937 | 2_1:-66634813 | Msa0219110:CDS |
| TGGAAAATTTGAATACCCAG+AGG | 0.725629 | 2_1:+66634872 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAATAGACAAAAAA+AGG | + | chr2_1:66632779-66632798 | None:intergenic | 10.0% |
| !! | AAGATTTCATAATATTAATT+TGG | + | chr2_1:66634258-66634277 | None:intergenic | 10.0% |
| !!! | TTGTTTTTTTTTTTTTTTGG+AGG | - | chr2_1:66631186-66631205 | Msa0219110:intron | 15.0% |
| !! | AATCAATTAAGTTAAAGTTA+AGG | - | chr2_1:66632734-66632753 | Msa0219110:intron | 15.0% |
| !! | ATCAATTAAGTTAAAGTTAA+GGG | - | chr2_1:66632735-66632754 | Msa0219110:intron | 15.0% |
| !!! | TCTATTTTTTTAATGTGTTT+GGG | - | chr2_1:66632786-66632805 | Msa0219110:intron | 15.0% |
| !! | AACAAAAAAAAAAAAAGCTT+TGG | + | chr2_1:66632977-66632996 | None:intergenic | 15.0% |
| !!! | CAATTTTAAAAACTATATTC+CGG | + | chr2_1:66633261-66633280 | None:intergenic | 15.0% |
| !! | ATGTAAGAAAATTATCTATT+TGG | + | chr2_1:66634138-66634157 | None:intergenic | 15.0% |
| !! | AAATATTAGCGATATAAAAA+TGG | + | chr2_1:66634229-66634248 | None:intergenic | 15.0% |
| !! | AAATAAAATAAACCTCAAAT+TGG | + | chr2_1:66634287-66634306 | None:intergenic | 15.0% |
| !!! | AATTTGAGGTTTATTTTATT+TGG | - | chr2_1:66634286-66634305 | Msa0219110:intron | 15.0% |
| !! | AATTACAGCTTAAAAATTTA+TGG | + | chr2_1:66635086-66635105 | None:intergenic | 15.0% |
| !! | AAATAAGCAATGTAATAAAT+TGG | - | chr2_1:66635168-66635187 | Msa0219110:CDS | 15.0% |
| !!! | ATATTATATCTCTGTTTTTG+TGG | - | chr2_1:66630570-66630589 | Msa0219110:three_prime_UTR | 20.0% |
| !!! | TATTATATCTCTGTTTTTGT+GGG | - | chr2_1:66630571-66630590 | Msa0219110:three_prime_UTR | 20.0% |
| !!! | CTTTTCATAGCTTTAATTTA+AGG | - | chr2_1:66631076-66631095 | Msa0219110:intron | 20.0% |
| !! | TAAAAGTTTACCAATTCTAA+GGG | + | chr2_1:66631145-66631164 | None:intergenic | 20.0% |
| !! | ATAAAAGTTTACCAATTCTA+AGG | + | chr2_1:66631146-66631165 | None:intergenic | 20.0% |
| !! | TATCTCGTATAAAAACAATT+TGG | + | chr2_1:66631430-66631449 | None:intergenic | 20.0% |
| !!! | AATTAGCTTAATACAACTTA+TGG | - | chr2_1:66631488-66631507 | Msa0219110:intron | 20.0% |
| !!! | ATTAGCTTAATACAACTTAT+GGG | - | chr2_1:66631489-66631508 | Msa0219110:intron | 20.0% |
| !!! | ATGTGTTGTTTGATTTTTTT+TGG | - | chr2_1:66632485-66632504 | Msa0219110:intron | 20.0% |
| !!! | TGTGTTGTTTGATTTTTTTT+GGG | - | chr2_1:66632486-66632505 | Msa0219110:intron | 20.0% |
| !! | ATTGGTACAAATTATAGTTA+GGG | - | chr2_1:66632696-66632715 | Msa0219110:intron | 20.0% |
| !!! | GTCTATTTTTTTAATGTGTT+TGG | - | chr2_1:66632785-66632804 | Msa0219110:intron | 20.0% |
| !! | CAACTGAAAAAAAATAATTC+TGG | - | chr2_1:66632893-66632912 | Msa0219110:intron | 20.0% |
| !! | AATGCTATATATATTAGTAG+TGG | - | chr2_1:66633181-66633200 | Msa0219110:intron | 20.0% |
| !! | TATTTAGAAAGTTACAATCT+TGG | + | chr2_1:66633333-66633352 | None:intergenic | 20.0% |
| !! | TCAAATTCAAATACAAATAG+AGG | + | chr2_1:66633494-66633513 | None:intergenic | 20.0% |
| !! | TATTTGTATTTGAATTTGAC+AGG | - | chr2_1:66633495-66633514 | Msa0219110:intron | 20.0% |
| !!! | AAAAGAGTAAACTTCAATTT+TGG | - | chr2_1:66633825-66633844 | Msa0219110:intron | 20.0% |
| !! | TGATACTAAAATATGTTGTT+TGG | + | chr2_1:66634080-66634099 | None:intergenic | 20.0% |
| !! | AGAAAATTATCTATTTGGAT+TGG | + | chr2_1:66634133-66634152 | None:intergenic | 20.0% |
| !!! | TAAATTTTGCAAAAGAGAAT+AGG | - | chr2_1:66634749-66634768 | Msa0219110:CDS | 20.0% |
| !! | TAATCATAAGATACAAGAAA+CGG | + | chr2_1:66634983-66635002 | None:intergenic | 20.0% |
| !!! | AATTGATTGTTTTATGTGTT+TGG | - | chr2_1:66635052-66635071 | Msa0219110:CDS | 20.0% |
| !! | AAGAAAAAGTGATTAAAAAC+AGG | - | chr2_1:66635144-66635163 | Msa0219110:CDS | 20.0% |
| ! | TGTTATAAGAAGCTTTCAAA+TGG | - | chr2_1:66630993-66631012 | Msa0219110:intron | 25.0% |
| !!! | TTGTTGTTTGTGTTGTTTAT+AGG | - | chr2_1:66631229-66631248 | Msa0219110:intron | 25.0% |
| !!! | TGTTGTTTGTGTTGTTTATA+GGG | - | chr2_1:66631230-66631249 | Msa0219110:intron | 25.0% |
| !! | TTTTCATTCTTTGATCAACT+TGG | - | chr2_1:66631308-66631327 | Msa0219110:intron | 25.0% |
| ! | GAATATACAAAGTACATGTA+TGG | + | chr2_1:66631554-66631573 | None:intergenic | 25.0% |
| ! | GTTAGATGCTATAAAAAGAA+AGG | - | chr2_1:66631691-66631710 | Msa0219110:intron | 25.0% |
| !!! | TTGAATGCAAGATTTTAAGA+CGG | + | chr2_1:66631777-66631796 | None:intergenic | 25.0% |
| ! | AAGCCATTTAACATGAAAAT+AGG | + | chr2_1:66631896-66631915 | None:intergenic | 25.0% |
| ! | GAACTAAAAAATTGTACTAG+AGG | + | chr2_1:66632164-66632183 | None:intergenic | 25.0% |
| ! | AATCAATTAAGTTAAAGGAC+CGG | + | chr2_1:66632525-66632544 | None:intergenic | 25.0% |
| ! | GAGACAATCAATTAAGTTAA+AGG | + | chr2_1:66632729-66632748 | None:intergenic | 25.0% |
| ! | ATTGGTACAAATTATAGTCA+GGG | + | chr2_1:66632562-66632581 | None:intergenic | 25.0% |
| ! | AATTGGTACAAATTATAGTC+AGG | + | chr2_1:66632563-66632582 | None:intergenic | 25.0% |
| !! | GACTATAATTTGTACCAATT+TGG | - | chr2_1:66632563-66632582 | Msa0219110:intron | 25.0% |
| ! | GAAAAGACTAAAACTAGTAA+CGG | + | chr2_1:66632605-66632624 | None:intergenic | 25.0% |
| !! | AACTATAATTTGTACCAATG+TGG | + | chr2_1:66632695-66632714 | None:intergenic | 25.0% |
| ! | CATTGGTACAAATTATAGTT+AGG | - | chr2_1:66632695-66632714 | Msa0219110:intron | 25.0% |
| ! | TTGGTACAAATTATAGTTAG+GGG | - | chr2_1:66632697-66632716 | Msa0219110:intron | 25.0% |
| ! | CTTAATTGATTGTCTCAATT+TGG | + | chr2_1:66632534-66632553 | None:intergenic | 25.0% |
| ! | GTTATTTGAACATCAAAACA+CGG | + | chr2_1:66632872-66632891 | None:intergenic | 25.0% |
| !! | TTGTATCAAATTTTGTTACC+TGG | - | chr2_1:66633016-66633035 | Msa0219110:intron | 25.0% |
| !!! | AACATGCTTAGATTTTTAGA+TGG | + | chr2_1:66633049-66633068 | None:intergenic | 25.0% |
| !! | ATTGTGGCAAATTTTTCTTA+AGG | - | chr2_1:66633095-66633114 | Msa0219110:intron | 25.0% |
| ! | AAGCAAAGTAAAAATTCAGA+GGG | + | chr2_1:66633567-66633586 | None:intergenic | 25.0% |
| !! | TGAATTTTTACTTTGCTTGT+AGG | - | chr2_1:66633569-66633588 | Msa0219110:intron | 25.0% |
| !! | GAATTTTTACTTTGCTTGTA+GGG | - | chr2_1:66633570-66633589 | Msa0219110:intron | 25.0% |
| !! | AGTATAGTGATGGAAATAAT+AGG | - | chr2_1:66633712-66633731 | Msa0219110:intron | 25.0% |
| !!! | GGTCTTGAAAGATTTTAATT+TGG | - | chr2_1:66633846-66633865 | Msa0219110:intron | 25.0% |
| !!! | TATCTATTTGGATTGGTAAA+AGG | + | chr2_1:66634126-66634145 | None:intergenic | 25.0% |
| ! | AACAGAACATGAGATATATA+AGG | + | chr2_1:66634318-66634337 | None:intergenic | 25.0% |
| !! | TATATCTCATGTTCTGTTTT+TGG | - | chr2_1:66634320-66634339 | Msa0219110:intron | 25.0% |
| !! | TTAGTTCACATATTTGGTTT+CGG | - | chr2_1:66634472-66634491 | Msa0219110:intron | 25.0% |
| ! | AAGCTAGATATAATCAAAGA+CGG | + | chr2_1:66634531-66634550 | None:intergenic | 25.0% |
| !! | TCTTTGATTATATCTAGCTT+TGG | - | chr2_1:66634531-66634550 | Msa0219110:intron | 25.0% |
| ! | TGTGATAGGAAATAAACATT+AGG | - | chr2_1:66634716-66634735 | Msa0219110:CDS | 25.0% |
| ! | GTGATAGGAAATAAACATTA+GGG | - | chr2_1:66634717-66634736 | Msa0219110:CDS | 25.0% |
| !! | GCTAATTTCTAAAAAGTGAA+GGG | + | chr2_1:66634803-66634822 | None:intergenic | 25.0% |
| !! | AGCTAATTTCTAAAAAGTGA+AGG | + | chr2_1:66634804-66634823 | None:intergenic | 25.0% |
| ! | TAACAAACAAGTAAATCAGA+GGG | + | chr2_1:66634845-66634864 | None:intergenic | 25.0% |
| ! | ACTTTGATTGAGCAATAATA+AGG | - | chr2_1:66635120-66635139 | Msa0219110:CDS | 25.0% |
| ! | ACAACTTCTAGATAATGTTT+AGG | + | chr2_1:66635242-66635261 | None:intergenic | 25.0% |
| GAAAGCTTCTTATAACATCT+TGG | + | chr2_1:66630990-66631009 | None:intergenic | 30.0% | |
| CAACTTATGGGTGTATTATA+AGG | - | chr2_1:66631501-66631520 | Msa0219110:intron | 30.0% | |
| ! | AACGTTAAGTTCCTAGATTT+TGG | - | chr2_1:66631827-66631846 | Msa0219110:intron | 30.0% |
| ! | ACGTTAAGTTCCTAGATTTT+GGG | - | chr2_1:66631828-66631847 | Msa0219110:intron | 30.0% |
| ATTAACCGAATTTCCTTTCT+AGG | + | chr2_1:66631867-66631886 | None:intergenic | 30.0% | |
| AAGGAAATTCGGTTAATTGT+TGG | - | chr2_1:66631870-66631889 | Msa0219110:intron | 30.0% | |
| ! | TGGCCTATTTTCATGTTAAA+TGG | - | chr2_1:66631890-66631909 | Msa0219110:intron | 30.0% |
| ATGGCTTATGATGAATGAAT+TGG | - | chr2_1:66631909-66631928 | Msa0219110:intron | 30.0% | |
| TGGCTTATGATGAATGAATT+GGG | - | chr2_1:66631910-66631929 | Msa0219110:intron | 30.0% | |
| ACTCTCAAACAAAACCTAAA+GGG | + | chr2_1:66631946-66631965 | None:intergenic | 30.0% | |
| AACTCTCAAACAAAACCTAA+AGG | + | chr2_1:66631947-66631966 | None:intergenic | 30.0% | |
| !!! | TTAGGTTTTGTTTGAGAGTT+TGG | - | chr2_1:66631947-66631966 | Msa0219110:intron | 30.0% |
| CTAAAAAATTGTACTAGAGG+AGG | + | chr2_1:66632161-66632180 | None:intergenic | 30.0% | |
| AGAAATAGATGACATTGAGA+GGG | + | chr2_1:66632242-66632261 | None:intergenic | 30.0% | |
| AAGAAATAGATGACATTGAG+AGG | + | chr2_1:66632243-66632262 | None:intergenic | 30.0% | |
| TCAATTCAGAAAACCATCTA+AGG | + | chr2_1:66632320-66632339 | None:intergenic | 30.0% | |
| CACTACATCGAAATTCAAAA+TGG | + | chr2_1:66632355-66632374 | None:intergenic | 30.0% | |
| ! | TAGTGATGTAAAGCCTTATA+TGG | - | chr2_1:66632370-66632389 | Msa0219110:intron | 30.0% |
| TTATATGGTCAATGCAACAT+GGG | - | chr2_1:66632385-66632404 | Msa0219110:intron | 30.0% | |
| ATCAATTAAGTTAAAGGACC+GGG | + | chr2_1:66632524-66632543 | None:intergenic | 30.0% | |
| TTGGTACAAATTATAGTCAG+GGG | + | chr2_1:66632561-66632580 | None:intergenic | 30.0% | |
| TTTGAGAGAAACTAACAGAA+AGG | - | chr2_1:66632636-66632655 | Msa0219110:intron | 30.0% | |
| GAAAGGACTAAAACTAGTAA+CGG | - | chr2_1:66632653-66632672 | Msa0219110:intron | 30.0% | |
| TGGTACAAATTATAGTTAGG+GGG | - | chr2_1:66632698-66632717 | Msa0219110:intron | 30.0% | |
| TTAAGTTAAAGTTAAGGGAC+CGG | - | chr2_1:66632740-66632759 | Msa0219110:intron | 30.0% | |
| TATATGAACCGGAAGAAATA+TGG | + | chr2_1:66632923-66632942 | None:intergenic | 30.0% | |
| !!! | AAAAGCTTTGGTGTTTTAGA+TGG | + | chr2_1:66632965-66632984 | None:intergenic | 30.0% |
| AAATTTGATACAACTCAGAC+AGG | + | chr2_1:66633009-66633028 | None:intergenic | 30.0% | |
| ATCATAGTTGTCCAGTAATA+TGG | - | chr2_1:66633145-66633164 | Msa0219110:intron | 30.0% | |
| TAAAAACTATATTCCGGTTC+AGG | + | chr2_1:66633255-66633274 | None:intergenic | 30.0% | |
| GATAGTGAAATATTTCACGT+TGG | + | chr2_1:66633286-66633305 | None:intergenic | 30.0% | |
| AAAGTTACAATCTTGGTAGA+TGG | + | chr2_1:66633326-66633345 | None:intergenic | 30.0% | |
| CAAGCAAAGTAAAAATTCAG+AGG | + | chr2_1:66633568-66633587 | None:intergenic | 30.0% | |
| ! | ATAGTGATGGAAATAATAGG+AGG | - | chr2_1:66633715-66633734 | Msa0219110:intron | 30.0% |
| ! | TAGTGATGGAAATAATAGGA+GGG | - | chr2_1:66633716-66633735 | Msa0219110:intron | 30.0% |
| ! | GTGGTACAAAAAATCTTTTC+AGG | + | chr2_1:66633873-66633892 | None:intergenic | 30.0% |
| GCATAATCTTAAGAACAATG+TGG | + | chr2_1:66633892-66633911 | None:intergenic | 30.0% | |
| GATTATGCATGAATAGCTAA+TGG | - | chr2_1:66633904-66633923 | Msa0219110:intron | 30.0% | |
| ATTGGTAAAAGGAAACGATA+TGG | + | chr2_1:66634115-66634134 | None:intergenic | 30.0% | |
| AAATATGTGAACTAAACCAG+TGG | + | chr2_1:66634467-66634486 | None:intergenic | 30.0% | |
| ! | ACTGGTTTAGTTCACATATT+TGG | - | chr2_1:66634466-66634485 | Msa0219110:intron | 30.0% |
| ATCAGCATATATCAATGGAA+GGG | + | chr2_1:66634612-66634631 | None:intergenic | 30.0% | |
| AATCAGCATATATCAATGGA+AGG | + | chr2_1:66634613-66634632 | None:intergenic | 30.0% | |
| GGTAAATCAGCATATATCAA+TGG | + | chr2_1:66634617-66634636 | None:intergenic | 30.0% | |
| ATGGTTTCAGTTTGAATATC+TGG | - | chr2_1:66634643-66634662 | Msa0219110:intron | 30.0% | |
| ! | TCAGTTTGAATATCTGGTTT+CGG | - | chr2_1:66634649-66634668 | Msa0219110:intron | 30.0% |
| CATTGTCTTGATTATGTGAT+AGG | - | chr2_1:66634702-66634721 | Msa0219110:CDS | 30.0% | |
| ! | AGAATAGGACATAAGCATTT+TGG | - | chr2_1:66634764-66634783 | Msa0219110:CDS | 30.0% |
| AACAAACAAGTAAATCAGAG+GGG | + | chr2_1:66634844-66634863 | None:intergenic | 30.0% | |
| GTAACAAACAAGTAAATCAG+AGG | + | chr2_1:66634846-66634865 | None:intergenic | 30.0% | |
| ! | TAATTACTTGTTGCACTTTC+AGG | - | chr2_1:66634871-66634890 | Msa0219110:CDS | 30.0% |
| ! | AATTACTTGTTGCACTTTCA+GGG | - | chr2_1:66634872-66634891 | Msa0219110:CDS | 30.0% |
| TTATGACGACTTTATGTCTA+TGG | - | chr2_1:66634952-66634971 | Msa0219110:CDS | 30.0% | |
| !! | GATTGTTTTATGTGTTTGGT+TGG | - | chr2_1:66635056-66635075 | Msa0219110:CDS | 30.0% |
| AAGAGAAAAGAAACACGAGA+TGG | + | chr2_1:66630517-66630536 | None:intergenic | 35.0% | |
| TAGTTAGAATTAGAAGGTGG+TGG | + | chr2_1:66630712-66630731 | None:intergenic | 35.0% | |
| GTGTAGTTAGAATTAGAAGG+TGG | + | chr2_1:66630715-66630734 | None:intergenic | 35.0% | |
| GAGGTGTAGTTAGAATTAGA+AGG | + | chr2_1:66630718-66630737 | None:intergenic | 35.0% | |
| TTGTTGTAGTTTGAAGAAGG+AGG | + | chr2_1:66630802-66630821 | None:intergenic | 35.0% | |
| TGGTTGTTGTAGTTTGAAGA+AGG | + | chr2_1:66630805-66630824 | None:intergenic | 35.0% | |
| GGTACATTTCATCTTCATCT+GGG | - | chr2_1:66630863-66630882 | Msa0219110:CDS | 35.0% | |
| TGGAAAATTTGAATACCCAG+AGG | + | chr2_1:66630956-66630975 | None:intergenic | 35.0% | |
| !! | ATAACATCTTGGTTTGTTCC+TGG | + | chr2_1:66630979-66630998 | None:intergenic | 35.0% |
| CAAAGCTCTGTAAATTCCTT+TGG | + | chr2_1:66631256-66631275 | None:intergenic | 35.0% | |
| CAAAGGAATTTACAGAGCTT+TGG | - | chr2_1:66631254-66631273 | Msa0219110:intron | 35.0% | |
| !!! | AACCTTATTTTCTACCCACA+TGG | + | chr2_1:66631674-66631693 | None:intergenic | 35.0% |
| CTAACAAGTGTCTTGACTTA+GGG | - | chr2_1:66631720-66631739 | Msa0219110:intron | 35.0% | |
| TAACAAGTGTCTTGACTTAG+GGG | - | chr2_1:66631721-66631740 | Msa0219110:intron | 35.0% | |
| ATCTAGGAACTTAACGTTGA+AGG | + | chr2_1:66631825-66631844 | None:intergenic | 35.0% | |
| CAAGACCTAGAAAGGAAATT+CGG | - | chr2_1:66631859-66631878 | Msa0219110:intron | 35.0% | |
| GTTGGAAATATAGGGGAAAA+TGG | - | chr2_1:66631989-66632008 | Msa0219110:intron | 35.0% | |
| ! | TTGTACTAGAGGAGGATTTT+GGG | + | chr2_1:66632153-66632172 | None:intergenic | 35.0% |
| ! | ATTGTACTAGAGGAGGATTT+TGG | + | chr2_1:66632154-66632173 | None:intergenic | 35.0% |
| !!! | TTTTTTAGTTCCCCCAAATG+AGG | - | chr2_1:66632173-66632192 | Msa0219110:CDS | 35.0% |
| ATACAAAACCCTCCTCATTT+GGG | + | chr2_1:66632188-66632207 | None:intergenic | 35.0% | |
| AATACAAAACCCTCCTCATT+TGG | + | chr2_1:66632189-66632208 | None:intergenic | 35.0% | |
| ! | CATGTTGCATTGACCATATA+AGG | + | chr2_1:66632386-66632405 | None:intergenic | 35.0% |
| CTTATATGGTCAATGCAACA+TGG | - | chr2_1:66632384-66632403 | Msa0219110:intron | 35.0% | |
| !! | AGATTGTTGATTTGTTACGC+TGG | - | chr2_1:66632409-66632428 | Msa0219110:intron | 35.0% |
| CTGGATTCTAACAGAAAAAG+AGG | - | chr2_1:66632428-66632447 | Msa0219110:intron | 35.0% | |
| ! | TAGTAACGGAGCAAAACATA+GGG | + | chr2_1:66632667-66632686 | None:intergenic | 35.0% |
| TAAGTTAAAGTTAAGGGACC+GGG | - | chr2_1:66632741-66632760 | Msa0219110:intron | 35.0% | |
| AAAAGGCTTATTCAATCACC+CGG | + | chr2_1:66632762-66632781 | None:intergenic | 35.0% | |
| TTTGGGCTGTAGAAGATAAA+AGG | - | chr2_1:66632803-66632822 | Msa0219110:intron | 35.0% | |
| TTCCGGTTCATATACTTGTA+CGG | - | chr2_1:66632929-66632948 | Msa0219110:intron | 35.0% | |
| AACCGTACAAGTATATGAAC+CGG | + | chr2_1:66632934-66632953 | None:intergenic | 35.0% | |
| ! | GTGCTTTCTTTTCTGAATTG+TGG | - | chr2_1:66633079-66633098 | Msa0219110:intron | 35.0% |
| TTGTCCAGTAATATGGACTT+TGG | - | chr2_1:66633152-66633171 | Msa0219110:intron | 35.0% | |
| TGGATGAAGTAGTCAAAGTA+GGG | + | chr2_1:66633404-66633423 | None:intergenic | 35.0% | |
| ATGGATGAAGTAGTCAAAGT+AGG | + | chr2_1:66633405-66633424 | None:intergenic | 35.0% | |
| TATCACTAATTGCAGTAGAG+AGG | + | chr2_1:66633450-66633469 | None:intergenic | 35.0% | |
| AAATTCAGAGGGAATCACAT+GGG | + | chr2_1:66633556-66633575 | None:intergenic | 35.0% | |
| AAAATTCAGAGGGAATCACA+TGG | + | chr2_1:66633557-66633576 | None:intergenic | 35.0% | |
| TTGAGAGATACGACAAAGAT+AGG | - | chr2_1:66633598-66633617 | Msa0219110:intron | 35.0% | |
| CTGCTTTCAAAGTATAGTGA+TGG | - | chr2_1:66633702-66633721 | Msa0219110:intron | 35.0% | |
| AATAATAGGAGGGTTGAACT+CGG | - | chr2_1:66633726-66633745 | Msa0219110:intron | 35.0% | |
| ! | GTCGAGTAAGACATTTTATC+TGG | - | chr2_1:66633762-66633781 | Msa0219110:intron | 35.0% |
| TGGAGTGAAATGTAACAGAT+TGG | - | chr2_1:66633924-66633943 | Msa0219110:intron | 35.0% | |
| ! | CTTGTTTGGGAAGTATGATA+AGG | + | chr2_1:66634005-66634024 | None:intergenic | 35.0% |
| CTTATCATACTTCCCAAACA+AGG | - | chr2_1:66634003-66634022 | Msa0219110:intron | 35.0% | |
| ! | ATTTCGTTCCATCCTTGTTT+GGG | + | chr2_1:66634018-66634037 | None:intergenic | 35.0% |
| ACGATAACAATCATCATCTG+AGG | - | chr2_1:66634202-66634221 | Msa0219110:intron | 35.0% | |
| AATCTTTCACGACCAATTTG+AGG | - | chr2_1:66634272-66634291 | Msa0219110:intron | 35.0% | |
| !! | ATATCTAGCTTTGGAAGCTA+AGG | - | chr2_1:66634540-66634559 | Msa0219110:intron | 35.0% |
| TCAGCATATATCAATGGAAG+GGG | + | chr2_1:66634611-66634630 | None:intergenic | 35.0% | |
| AGTGCAACAAGTAATTAGCA+TGG | + | chr2_1:66634868-66634887 | None:intergenic | 35.0% | |
| GTCCTTATCCTTAAACTTGT+CGG | + | chr2_1:66634903-66634922 | None:intergenic | 35.0% | |
| TTATCTAGAAGTTGTGCATG+AGG | - | chr2_1:66635247-66635266 | Msa0219110:five_prime_UTR | 35.0% | |
| ! | TATGTTTCAGCACTGGATTA+TGG | - | chr2_1:66635301-66635320 | Msa0219110:five_prime_UTR | 35.0% |
| AAACACGAGATGGAAGTTTC+TGG | + | chr2_1:66630507-66630526 | None:intergenic | 40.0% | |
| ! | CTGTGTAGGTTCGATTTGAT+TGG | + | chr2_1:66630619-66630638 | None:intergenic | 40.0% |
| TTGATGGGAGATAACTGTGT+AGG | + | chr2_1:66630633-66630652 | None:intergenic | 40.0% | |
| TTGAGAATTGTATCTGCCGT+AGG | + | chr2_1:66630662-66630681 | None:intergenic | 40.0% | |
| ! | TTAGAAGGTGGTGGTAATTC+AGG | + | chr2_1:66630703-66630722 | None:intergenic | 40.0% |
| ! | TTGGGTGTAGTTGGCATTTT+GGG | + | chr2_1:66630740-66630759 | None:intergenic | 40.0% |
| TGGGTGTAGTTGTTGTAAGA+GGG | + | chr2_1:66630772-66630791 | None:intergenic | 40.0% | |
| TTGGGTGTAGTTGTTGTAAG+AGG | + | chr2_1:66630773-66630792 | None:intergenic | 40.0% | |
| TTGTAGTTTGAAGAAGGAGG+TGG | + | chr2_1:66630799-66630818 | None:intergenic | 40.0% | |
| ATGAAGAAACTTGTGCGGAA+GGG | + | chr2_1:66630840-66630859 | None:intergenic | 40.0% | |
| GGGTACATTTCATCTTCATC+TGG | - | chr2_1:66630862-66630881 | Msa0219110:CDS | 40.0% | |
| TATCCTCCTTCTTCTTCATC+TGG | - | chr2_1:66630886-66630905 | Msa0219110:CDS | 40.0% | |
| ATCCTCCTTCTTCTTCATCT+GGG | - | chr2_1:66630887-66630906 | Msa0219110:CDS | 40.0% | |
| TATCCTCCTCCTTCTTTATC+TGG | - | chr2_1:66630910-66630929 | Msa0219110:CDS | 40.0% | |
| ATCCTCCTCCTTCTTTATCT+GGG | - | chr2_1:66630911-66630930 | Msa0219110:CDS | 40.0% | |
| ! | GGGTATTCAAATTTTCCACC+AGG | - | chr2_1:66630958-66630977 | Msa0219110:intron | 40.0% |
| ATGGTAGATAGAGATCGAAG+TGG | - | chr2_1:66631012-66631031 | Msa0219110:intron | 40.0% | |
| ! | CCAATTCTAAGGGATTCATG+AGG | + | chr2_1:66631135-66631154 | None:intergenic | 40.0% |
| CCTCATGAATCCCTTAGAAT+TGG | - | chr2_1:66631132-66631151 | Msa0219110:intron | 40.0% | |
| !! | TGTGTTGTTTATAGGGCCAA+AGG | - | chr2_1:66631237-66631256 | Msa0219110:intron | 40.0% |
| AAGCTATTCTCGAGTGTTTG+TGG | - | chr2_1:66631464-66631483 | Msa0219110:intron | 40.0% | |
| !! | GTCTGTTGTTTCAGCAGTTT+AGG | - | chr2_1:66631601-66631620 | Msa0219110:intron | 40.0% |
| AGCCATGTGGGTAGAAAATA+AGG | - | chr2_1:66631669-66631688 | Msa0219110:intron | 40.0% | |
| GCTAACAAGTGTCTTGACTT+AGG | - | chr2_1:66631719-66631738 | Msa0219110:intron | 40.0% | |
| TGGTAAGGAACCCAAAATCT+AGG | + | chr2_1:66631841-66631860 | None:intergenic | 40.0% | |
| TTCCTTACCAAGACCTAGAA+AGG | - | chr2_1:66631851-66631870 | Msa0219110:intron | 40.0% | |
| TTCCTTTCTAGGTCTTGGTA+AGG | + | chr2_1:66631856-66631875 | None:intergenic | 40.0% | |
| CGAATTTCCTTTCTAGGTCT+TGG | + | chr2_1:66631861-66631880 | None:intergenic | 40.0% | |
| !!! | GGTTTTGTTTGAGAGTTTGG+AGG | - | chr2_1:66631950-66631969 | Msa0219110:intron | 40.0% |
| TGTTTGAGAGTTTGGAGGAA+AGG | - | chr2_1:66631955-66631974 | Msa0219110:intron | 40.0% | |
| GTTTGAGAGTTTGGAGGAAA+GGG | - | chr2_1:66631956-66631975 | Msa0219110:intron | 40.0% | |
| TTTGAGAGTTTGGAGGAAAG+GGG | - | chr2_1:66631957-66631976 | Msa0219110:intron | 40.0% | |
| ! | TGTACTAGAGGAGGATTTTG+GGG | + | chr2_1:66632152-66632171 | None:intergenic | 40.0% |
| TACAAAACCCTCCTCATTTG+GGG | + | chr2_1:66632187-66632206 | None:intergenic | 40.0% | |
| TAGATGACATTGAGAGGGTA+AGG | + | chr2_1:66632237-66632256 | None:intergenic | 40.0% | |
| GGAAAAAAGGAAGGAACAAG+TGG | + | chr2_1:66632266-66632285 | None:intergenic | 40.0% | |
| !! | TAAGGCTTTGTTTGCGAGTT+TGG | + | chr2_1:66632302-66632321 | None:intergenic | 40.0% |
| TTTGGGCTTATTCAATCACC+CGG | - | chr2_1:66632503-66632522 | Msa0219110:intron | 40.0% | |
| CAAAACATAGGGGACCAAAT+TGG | + | chr2_1:66632580-66632599 | None:intergenic | 40.0% | |
| ! | AGTAACGGAGCAAAACATAG+GGG | + | chr2_1:66632668-66632687 | None:intergenic | 40.0% |
| ! | CTAGTAACGGAGCAAAACAT+AGG | + | chr2_1:66632666-66632685 | None:intergenic | 40.0% |
| ! | AGTAACGGAGCAAAACATAG+AGG | - | chr2_1:66632668-66632687 | Msa0219110:intron | 40.0% |
| CAAAACATAGAGGACCACAT+TGG | - | chr2_1:66632678-66632697 | Msa0219110:intron | 40.0% | |
| TCAAAACACGGACATCCTAT+GGG | + | chr2_1:66632860-66632879 | None:intergenic | 40.0% | |
| ATCAAAACACGGACATCCTA+TGG | + | chr2_1:66632861-66632880 | None:intergenic | 40.0% | |
| ! | TTTTTAGATGGAAGCTAGCC+AGG | + | chr2_1:66633037-66633056 | None:intergenic | 40.0% |
| TCCAGTAATATGGACTTTGG+AGG | - | chr2_1:66633155-66633174 | Msa0219110:intron | 40.0% | |
| ACCTCCAAAGTCCATATTAC+TGG | + | chr2_1:66633159-66633178 | None:intergenic | 40.0% | |
| AGGATGTACATGAAGAAGAG+GGG | + | chr2_1:66633235-66633254 | None:intergenic | 40.0% | |
| CAGGATGTACATGAAGAAGA+GGG | + | chr2_1:66633236-66633255 | None:intergenic | 40.0% | |
| TCAGGATGTACATGAAGAAG+AGG | + | chr2_1:66633237-66633256 | None:intergenic | 40.0% | |
| TCTTCATGTACATCCTGAAC+CGG | - | chr2_1:66633239-66633258 | Msa0219110:intron | 40.0% | |
| GTTCAGTGACAGTGTAAAAG+TGG | - | chr2_1:66633366-66633385 | Msa0219110:intron | 40.0% | |
| CAATGGCTTATCACACAACA+TGG | + | chr2_1:66633424-66633443 | None:intergenic | 40.0% | |
| AGATACGACAAAGATAGGAG+TGG | - | chr2_1:66633603-66633622 | Msa0219110:intron | 40.0% | |
| !! | AGAGCATCTCTTAGCTCTAA+TGG | + | chr2_1:66633639-66633658 | None:intergenic | 40.0% |
| AGAGATGCTCTGTATGGTAT+TGG | - | chr2_1:66633648-66633667 | Msa0219110:intron | 40.0% | |
| AAGCAGAAGTTGTAGAACTG+AGG | + | chr2_1:66633688-66633707 | None:intergenic | 40.0% | |
| TCATACTTCCCAAACAAGGA+TGG | - | chr2_1:66634007-66634026 | Msa0219110:intron | 40.0% | |
| GATTTCGTTCCATCCTTGTT+TGG | + | chr2_1:66634019-66634038 | None:intergenic | 40.0% | |
| !!! | TTCTGTTTTTGGATGTGTGC+AGG | - | chr2_1:66634331-66634350 | Msa0219110:intron | 40.0% |
| !!! | TCATTGAGCTTTTGAAGCTG+AGG | - | chr2_1:66634379-66634398 | Msa0219110:intron | 40.0% |
| ATCAATGGAAGGGGGAAATA+AGG | + | chr2_1:66634602-66634621 | None:intergenic | 40.0% | |
| CAGCATATATCAATGGAAGG+GGG | + | chr2_1:66634610-66634629 | None:intergenic | 40.0% | |
| !! | ATGCTGATTTACCTGCTTCA+TGG | - | chr2_1:66634624-66634643 | Msa0219110:intron | 40.0% |
| TCAAACTGAAACCATGAAGC+AGG | + | chr2_1:66634638-66634657 | None:intergenic | 40.0% | |
| ACAATGCACGTGAATGTAAC+AGG | + | chr2_1:66634688-66634707 | None:intergenic | 40.0% | |
| GACCGACAAGTTTAAGGATA+AGG | - | chr2_1:66634898-66634917 | Msa0219110:CDS | 40.0% | |
| AGAGAGTTATGTTTCAGCAC+TGG | - | chr2_1:66635294-66635313 | Msa0219110:intron | 40.0% | |
| !! | GAGATGGAAGTTTCTGGTTC+AGG | + | chr2_1:66630501-66630520 | None:intergenic | 45.0% |
| CTCCCATCAATGTCTTCCTA+CGG | - | chr2_1:66630643-66630662 | Msa0219110:three_prime_UTR | 45.0% | |
| TGCCGTAGGAAGACATTGAT+GGG | + | chr2_1:66630648-66630667 | None:intergenic | 45.0% | |
| ! | GTTGGGTGTAGTTGGCATTT+TGG | + | chr2_1:66630741-66630760 | None:intergenic | 45.0% |
| AGTTGTTGTAAGAGGGAGGT+GGG | + | chr2_1:66630765-66630784 | None:intergenic | 45.0% | |
| TAGTTGTTGTAAGAGGGAGG+TGG | + | chr2_1:66630766-66630785 | None:intergenic | 45.0% | |
| GTGTAGTTGTTGTAAGAGGG+AGG | + | chr2_1:66630769-66630788 | None:intergenic | 45.0% | |
| TAGTTTGAAGAAGGAGGTGG+AGG | + | chr2_1:66630796-66630815 | None:intergenic | 45.0% | |
| GTGCGGAAGGGTAATTATGA+GGG | + | chr2_1:66630828-66630847 | None:intergenic | 45.0% | |
| TGTGCGGAAGGGTAATTATG+AGG | + | chr2_1:66630829-66630848 | None:intergenic | 45.0% | |
| GATGAAGAAACTTGTGCGGA+AGG | + | chr2_1:66630841-66630860 | None:intergenic | 45.0% | |
| TCCGCACAAGTTTCTTCATC+TGG | - | chr2_1:66630841-66630860 | Msa0219110:exon | 45.0% | |
| CCCAGATGAAGAAACTTGTG+CGG | + | chr2_1:66630845-66630864 | None:intergenic | 45.0% | |
| CCGCACAAGTTTCTTCATCT+GGG | - | chr2_1:66630842-66630861 | Msa0219110:exon | 45.0% | |
| TACCCAGATGAAGAAGAAGG+AGG | + | chr2_1:66630892-66630911 | None:intergenic | 45.0% | |
| GGATACCCAGATGAAGAAGA+AGG | + | chr2_1:66630895-66630914 | None:intergenic | 45.0% | |
| TACCCAGATAAAGAAGGAGG+AGG | + | chr2_1:66630916-66630935 | None:intergenic | 45.0% | |
| TGAATACCCAGAGGAAGAAG+AGG | + | chr2_1:66630947-66630966 | None:intergenic | 45.0% | |
| !! | ACATCTTGGTTTGTTCCTGG+TGG | + | chr2_1:66630976-66630995 | None:intergenic | 45.0% |
| !! | ACAGAGCTTTGGAATTGCCT+TGG | - | chr2_1:66631265-66631284 | Msa0219110:intron | 45.0% |
| ! | TTTGGAATTGCCTTGGTCAC+TGG | - | chr2_1:66631272-66631291 | Msa0219110:intron | 45.0% |
| TGGGCAATCTTTCTCCCTTT+AGG | - | chr2_1:66631929-66631948 | Msa0219110:intron | 45.0% | |
| AAGGGGAGGGTTGGAAATAT+AGG | - | chr2_1:66631980-66631999 | Msa0219110:intron | 45.0% | |
| AGGGGAGGGTTGGAAATATA+GGG | - | chr2_1:66631981-66632000 | Msa0219110:intron | 45.0% | |
| ! | TACTAGAGGAGGATTTTGGG+GGG | + | chr2_1:66632150-66632169 | None:intergenic | 45.0% |
| ! | GTACTAGAGGAGGATTTTGG+GGG | + | chr2_1:66632151-66632170 | None:intergenic | 45.0% |
| ! | TTTAGTTCCCCCAAATGAGG+AGG | - | chr2_1:66632176-66632195 | Msa0219110:CDS | 45.0% |
| TTAGTTCCCCCAAATGAGGA+GGG | - | chr2_1:66632177-66632196 | Msa0219110:CDS | 45.0% | |
| ACAAAACCCTCCTCATTTGG+GGG | + | chr2_1:66632186-66632205 | None:intergenic | 45.0% | |
| ATTGAGAGGGTAAGGCTTTG+GGG | + | chr2_1:66632229-66632248 | None:intergenic | 45.0% | |
| CATTGAGAGGGTAAGGCTTT+GGG | + | chr2_1:66632230-66632249 | None:intergenic | 45.0% | |
| ACATTGAGAGGGTAAGGCTT+TGG | + | chr2_1:66632231-66632250 | None:intergenic | 45.0% | |
| GAGGGGTTTGGAAAAAAGGA+AGG | + | chr2_1:66632275-66632294 | None:intergenic | 45.0% | |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | + | chr2_1:66632297-66632316 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | + | chr2_1:66632298-66632317 | None:intergenic | 45.0% |
| CTCGCAAACAAAGCCTTAGA+TGG | - | chr2_1:66632304-66632323 | Msa0219110:intron | 45.0% | |
| AAACACACACAGTGTCCCAT+AGG | - | chr2_1:66632842-66632861 | Msa0219110:intron | 45.0% | |
| CTGGTGCACCATATTTCTTC+CGG | - | chr2_1:66632912-66632931 | Msa0219110:intron | 45.0% | |
| TTGCAGTAGAGAGGAGTCAA+TGG | + | chr2_1:66633441-66633460 | None:intergenic | 45.0% | |
| GAGCTAAGAGATGCTCTGTA+TGG | - | chr2_1:66633642-66633661 | Msa0219110:intron | 45.0% | |
| AGAAGTTGTAGAACTGAGGC+TGG | + | chr2_1:66633684-66633703 | None:intergenic | 45.0% | |
| ! | TTTTTGGATGTGTGCAGGTG+TGG | - | chr2_1:66634336-66634355 | Msa0219110:intron | 45.0% |
| ! | TTTTGGATGTGTGCAGGTGT+GGG | - | chr2_1:66634337-66634356 | Msa0219110:intron | 45.0% |
| CAGGTGTGGGATGATTATCA+AGG | - | chr2_1:66634350-66634369 | Msa0219110:intron | 45.0% | |
| CTAAACCAGTGGAGCAAGTA+TGG | + | chr2_1:66634456-66634475 | None:intergenic | 45.0% | |
| GACGGTGCACATGAATGTAA+TGG | + | chr2_1:66634513-66634532 | None:intergenic | 45.0% | |
| GGGTTTGACCGACAAGTTTA+AGG | - | chr2_1:66634892-66634911 | Msa0219110:CDS | 45.0% | |
| GGATAAGGACAAGCGTTACT+CGG | - | chr2_1:66634913-66634932 | Msa0219110:CDS | 45.0% | |
| GATAAGGACAAGCGTTACTC+GGG | - | chr2_1:66634914-66634933 | Msa0219110:CDS | 45.0% | |
| !!! | ATTTTGTTTTTTTTTTTTTT+TGG | - | chr2_1:66631183-66631202 | Msa0219110:intron | 5.0% |
| CTGCCGTAGGAAGACATTGA+TGG | + | chr2_1:66630649-66630668 | None:intergenic | 50.0% | |
| GGTGGTAATTCAGGTGCAGA+TGG | + | chr2_1:66630694-66630713 | None:intergenic | 50.0% | |
| ! | GGTGTAGTTGGCATTTTGGG+AGG | + | chr2_1:66630737-66630756 | None:intergenic | 50.0% |
| TTGTTGTAAGAGGGAGGTGG+GGG | + | chr2_1:66630763-66630782 | None:intergenic | 50.0% | |
| GTTGTTGTAAGAGGGAGGTG+GGG | + | chr2_1:66630764-66630783 | None:intergenic | 50.0% | |
| TGAAGAAGGAGGTGGAGGTT+GGG | + | chr2_1:66630791-66630810 | None:intergenic | 50.0% | |
| TTGAAGAAGGAGGTGGAGGT+TGG | + | chr2_1:66630792-66630811 | None:intergenic | 50.0% | |
| CGGAAGGGTAATTATGAGGG+TGG | + | chr2_1:66630825-66630844 | None:intergenic | 50.0% | |
| GGGTACCCAGATAAAGAAGG+AGG | + | chr2_1:66630919-66630938 | None:intergenic | 50.0% | |
| !! | GGAGGGTACCCAGATAAAGA+AGG | + | chr2_1:66630922-66630941 | None:intergenic | 50.0% |
| CAGAGGAAGAAGAGGAAGGA+GGG | + | chr2_1:66630939-66630958 | None:intergenic | 50.0% | |
| CTCCTTCCTCTTCTTCCTCT+GGG | - | chr2_1:66630938-66630957 | Msa0219110:intron | 50.0% | |
| TACCCAGAGGAAGAAGAGGA+AGG | + | chr2_1:66630943-66630962 | None:intergenic | 50.0% | |
| AGAGTTTGGAGGAAAGGGGA+AGG | - | chr2_1:66631961-66631980 | Msa0219110:intron | 50.0% | |
| GAGTTTGGAGGAAAGGGGAA+GGG | - | chr2_1:66631962-66631981 | Msa0219110:intron | 50.0% | |
| AGTTTGGAGGAAAGGGGAAG+GGG | - | chr2_1:66631963-66631982 | Msa0219110:intron | 50.0% | |
| GGGGAGGGTTGGAAATATAG+GGG | - | chr2_1:66631982-66632001 | Msa0219110:intron | 50.0% | |
| !!! | GATTTTGGGGGGGTTTTGGA+GGG | + | chr2_1:66632139-66632158 | None:intergenic | 50.0% |
| !! | ACTAGAGGAGGATTTTGGGG+GGG | + | chr2_1:66632149-66632168 | None:intergenic | 50.0% |
| ! | TTGAGAGGGTAAGGCTTTGG+GGG | + | chr2_1:66632228-66632247 | None:intergenic | 50.0% |
| AGGGGAGGGGTTTGGAAAAA+AGG | + | chr2_1:66632279-66632298 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | + | chr2_1:66632299-66632318 | None:intergenic | 50.0% |
| CAGTGGAGCAAGTATGGAAG+GGG | + | chr2_1:66634450-66634469 | None:intergenic | 50.0% | |
| CCAGTGGAGCAAGTATGGAA+GGG | + | chr2_1:66634451-66634470 | None:intergenic | 50.0% | |
| ACCAGTGGAGCAAGTATGGA+AGG | + | chr2_1:66634452-66634471 | None:intergenic | 50.0% | |
| CCAGAGGAAGAAGAGGAAGG+AGG | + | chr2_1:66630940-66630959 | None:intergenic | 55.0% | |
| CCTCCTTCCTCTTCTTCCTC+TGG | - | chr2_1:66630937-66630956 | Msa0219110:intron | 55.0% | |
| GACTTACTCGCCAGTGACCA+AGG | + | chr2_1:66631285-66631304 | None:intergenic | 55.0% | |
| TCCCTAGAGCAGAAGCCATG+TGG | - | chr2_1:66631656-66631675 | Msa0219110:intron | 55.0% | |
| CCCACATGGCTTCTGCTCTA+GGG | + | chr2_1:66631660-66631679 | None:intergenic | 55.0% | |
| CCCTAGAGCAGAAGCCATGT+GGG | - | chr2_1:66631657-66631676 | Msa0219110:intron | 55.0% | |
| ACCCACATGGCTTCTGCTCT+AGG | + | chr2_1:66631661-66631680 | None:intergenic | 55.0% | |
| !! | GGATTTTGGGGGGGTTTTGG+AGG | + | chr2_1:66632140-66632159 | None:intergenic | 55.0% |
| !! | GGAGGATTTTGGGGGGGTTT+TGG | + | chr2_1:66632143-66632162 | None:intergenic | 55.0% |
| !! | TGAGAGGGTAAGGCTTTGGG+GGG | + | chr2_1:66632227-66632246 | None:intergenic | 55.0% |
| TTTGCGAGTTTGGAGGGGAG+GGG | + | chr2_1:66632292-66632311 | None:intergenic | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+GGG | + | chr2_1:66632293-66632312 | None:intergenic | 55.0% | |
| TGTTTGCGAGTTTGGAGGGG+AGG | + | chr2_1:66632294-66632313 | None:intergenic | 55.0% | |
| CCCTTCCATACTTGCTCCAC+TGG | - | chr2_1:66634448-66634467 | Msa0219110:intron | 55.0% | |
| AGGTGGGGGTTGGGTGTAGT+TGG | + | chr2_1:66630749-66630768 | None:intergenic | 60.0% | |
| GTAAGAGGGAGGTGGGGGTT+GGG | + | chr2_1:66630758-66630777 | None:intergenic | 60.0% | |
| TGTAAGAGGGAGGTGGGGGT+TGG | + | chr2_1:66630759-66630778 | None:intergenic | 60.0% | |
| TTGGAGGAAAGGGGAAGGGG+AGG | - | chr2_1:66631966-66631985 | Msa0219110:intron | 60.0% | |
| TGGAGGAAAGGGGAAGGGGA+GGG | - | chr2_1:66631967-66631986 | Msa0219110:intron | 60.0% | |
| GAGTTTGGAGGGGAGGGGTT+TGG | + | chr2_1:66632287-66632306 | None:intergenic | 60.0% | |
| GGAAAGGGGAAGGGGAGGGT+TGG | - | chr2_1:66631971-66631990 | Msa0219110:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 66630483 | 66635364 | 66630483 | ID=Msa0219110;Name=Msa0219110 |
| chr2_1 | mRNA | 66630483 | 66635364 | 66630483 | ID=Msa0219110-mRNA-1;Parent=Msa0219110;Name=Msa0219110-mRNA-1;_AED=0.18;_eAED=0.18;_QI=147|0.75|0.8|1|0.5|0.4|5|361|260 |
| chr2_1 | exon | 66630483 | 66630954 | 66630483 | ID=Msa0219110-mRNA-1:exon:18814;Parent=Msa0219110-mRNA-1 |
| chr2_1 | exon | 66631476 | 66631494 | 66631476 | ID=Msa0219110-mRNA-1:exon:18813;Parent=Msa0219110-mRNA-1 |
| chr2_1 | exon | 66632081 | 66632231 | 66632081 | ID=Msa0219110-mRNA-1:exon:18812;Parent=Msa0219110-mRNA-1 |
| chr2_1 | exon | 66634694 | 66635273 | 66634694 | ID=Msa0219110-mRNA-1:exon:18811;Parent=Msa0219110-mRNA-1 |
| chr2_1 | exon | 66635296 | 66635364 | 66635296 | ID=Msa0219110-mRNA-1:exon:18810;Parent=Msa0219110-mRNA-1 |
| chr2_1 | five_prime_UTR | 66635296 | 66635364 | 66635296 | ID=Msa0219110-mRNA-1:five_prime_utr;Parent=Msa0219110-mRNA-1 |
| chr2_1 | five_prime_UTR | 66635196 | 66635273 | 66635196 | ID=Msa0219110-mRNA-1:five_prime_utr;Parent=Msa0219110-mRNA-1 |
| chr2_1 | CDS | 66634694 | 66635195 | 66634694 | ID=Msa0219110-mRNA-1:cds;Parent=Msa0219110-mRNA-1 |
| chr2_1 | CDS | 66632081 | 66632231 | 66632081 | ID=Msa0219110-mRNA-1:cds;Parent=Msa0219110-mRNA-1 |
| chr2_1 | CDS | 66631476 | 66631494 | 66631476 | ID=Msa0219110-mRNA-1:cds;Parent=Msa0219110-mRNA-1 |
| chr2_1 | CDS | 66630844 | 66630954 | 66630844 | ID=Msa0219110-mRNA-1:cds;Parent=Msa0219110-mRNA-1 |
| chr2_1 | three_prime_UTR | 66630483 | 66630843 | 66630483 | ID=Msa0219110-mRNA-1:three_prime_utr;Parent=Msa0219110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
