AlfalfaGEDB | Msa0881460

M. sativa cultivar zhongmu-4 / Msa0881460

KEGG: K01802
GO: GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564
PFAM: PF00254.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881460	XP_003593250.1	98.214	112	2	0	1	112	1	112	1.21e-74	226

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881460	sp\|O04287\|FKB12_VICFA	88.393	112	13	0	1	112	1	112	2.44e-71	211

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881460	B7FFD7	98.214	112	2	0	1	112	1	112	5.78e-75	226

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0881460	0.838947	2.124365e-57	-8.615850e-47
Msa0003700	Msa0881460	0.806127	9.566527e-50	-8.615850e-47
Msa0017510	Msa0881460	0.801578	8.428393e-49	-8.615850e-47
Msa0044000	Msa0881460	0.804796	1.819020e-49	-8.615850e-47
Msa0056470	Msa0881460	0.817956	2.520256e-52	-8.615850e-47
Msa0064350	Msa0881460	0.826220	3.056980e-54	-8.615850e-47
Msa0064380	Msa0881460	0.802646	5.083523e-49	-8.615850e-47
Msa0075170	Msa0881460	0.808194	3.490992e-50	-8.615850e-47
Msa0090360	Msa0881460	0.803062	4.169273e-49	-8.615850e-47
Msa0123560	Msa0881460	0.803045	4.204423e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881460	MtrunA17_Chr2g0279511	98.214	112	2	0	1	112	1	112	1.11e-78	226
Msa0881460	MtrunA17_Chr8g0377771	45.455	110	54	4	2	110	38	142	8.86e-20	83.2
Msa0881460	MtrunA17_Chr8g0377771	36.036	111	65	3	3	110	272	379	6.39e-14	66.2
Msa0881460	MtrunA17_Chr5g0435521	40.000	110	63	3	2	110	12	119	1.16e-19	79.3
Msa0881460	MtrunA17_Chr8g0352971	42.308	104	49	3	11	110	9	105	1.66e-17	76.3
Msa0881460	MtrunA17_Chr7g0234801	45.263	95	47	3	16	110	49	138	2.89e-17	75.9
Msa0881460	MtrunA17_Chr8g0339141	46.316	95	46	3	16	110	55	144	4.92e-17	75.1
Msa0881460	MtrunA17_Chr7g0255551	44.037	109	55	4	2	109	21	124	2.07e-16	73.6
Msa0881460	MtrunA17_Chr4g0052911	36.364	110	56	4	11	110	133	238	2.98e-12	60.8
Msa0881460	MtrunA17_Chr4g0014351	35.644	101	58	3	12	111	774	868	5.15e-11	58.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881460	AT5G64350.1	86.607	112	15	0	1	112	1	112	3.53e-71	208
Msa0881460	AT3G55520.2	35.780	109	69	1	2	110	12	119	1.85e-17	73.9
Msa0881460	AT3G55520.3	35.780	109	69	1	2	110	12	119	1.85e-17	73.9
Msa0881460	AT3G55520.1	35.780	109	69	1	2	110	12	119	1.85e-17	73.9
Msa0881460	AT5G48570.1	40.000	110	60	4	2	110	47	151	9.73e-16	72.0
Msa0881460	AT3G25230.2	40.367	109	59	4	2	109	39	142	4.68e-15	70.1
Msa0881460	AT3G25230.1	40.367	109	59	4	2	109	39	142	6.01e-15	69.7
Msa0881460	AT4G25340.1	42.157	102	52	4	12	112	382	477	1.62e-14	68.6
Msa0881460	AT5G05420.1	41.176	102	52	4	12	112	49	143	2.40e-13	62.4
Msa0881460	AT5G45680.1	40.367	109	51	4	11	109	101	205	4.62e-13	62.8

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Find 50 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGGAAGAAGAAAGAT+GGG	0.430314	6_1:+28653711	Msa0881460:exon
AAAGTGAATGGATTCTGGCC+AGG	0.495829	6_1:-28654109	None:intergenic
AACAAATTGATAAAGAAACA+GGG	0.676496	6_1:-28655423	None:intergenic
AACGGTCCTAAGCCAACTCC+TGG	0.550713	6_1:+28653762	Msa0881460:CDS
AACGTCACTGTCCACTGCAC+CGG	0.551030	6_1:+28653789	Msa0881460:CDS
AACTCTCCAATATTAATATT+TGG	0.175040	6_1:+28655380	Msa0881460:three_prime_UTR
AATACAACCCAACTCTGTTT+TGG	0.332199	6_1:+28655171	Msa0881460:CDS
AATCCATTCACTTTCAAAAT+CGG	0.376739	6_1:+28654118	Msa0881460:CDS
ACACTACCAAATATTAATAT+TGG	0.352985	6_1:-28655386	None:intergenic
ACCTCCAGAATTTCTGAGAA+AGG	0.516160	6_1:-28653992	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGGAAGAAGAAAGAT+GGG	+	chr6_1:28653711-28653730	Msa0881460:exon	30.0%
TATTACAGTACAAAAGATCC+TGG	+	chr6_1:28654091-28654110	Msa0881460:intron	30.0%
CAATGTATATTCAGATGTGT+TGG	+	chr6_1:28654439-28654458	Msa0881460:intron	30.0%
CAACATATTAAGGTCATGTT+TGG	-	chr6_1:28654879-28654898	None:intergenic	30.0%
GAGTAAAAACAAACAGCAAT+GGG	-	chr6_1:28654906-28654925	None:intergenic	30.0%
TGAGTAAAAACAAACAGCAA+TGG	-	chr6_1:28654907-28654926	None:intergenic	30.0%
TACCAAAGGACAAACTAAAA+AGG	-	chr6_1:28655232-28655251	None:intergenic	30.0%
CAATATTATTTGGCAATGCA+TGG	+	chr6_1:28655449-28655468	Msa0881460:three_prime_UTR	30.0%
AAAGAAGGAAGAAGAAAGAT+GGG	+	chr6_1:28653711-28653730	Msa0881460:exon	30.0%
TATTACAGTACAAAAGATCC+TGG	+	chr6_1:28654091-28654110	Msa0881460:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	28653635	28655550	28653635	ID=Msa0881460;Name=Msa0881460
chr6_1	mRNA	28653635	28655550	28653635	ID=Msa0881460-mRNA-1;Parent=Msa0881460;Name=Msa0881460-mRNA-1;_AED=0.01;_eAED=0.01;_QI=94\|1\|1\|1\|1\|1\|5\|325\|112
chr6_1	exon	28653635	28653816	28653635	ID=Msa0881460-mRNA-1:exon:7258;Parent=Msa0881460-mRNA-1
chr6_1	exon	28653979	28654012	28653979	ID=Msa0881460-mRNA-1:exon:7259;Parent=Msa0881460-mRNA-1
chr6_1	exon	28654099	28654160	28654099	ID=Msa0881460-mRNA-1:exon:7260;Parent=Msa0881460-mRNA-1
chr6_1	exon	28654508	28654560	28654508	ID=Msa0881460-mRNA-1:exon:7261;Parent=Msa0881460-mRNA-1
chr6_1	exon	28655124	28655550	28655124	ID=Msa0881460-mRNA-1:exon:7262;Parent=Msa0881460-mRNA-1
chr6_1	five_prime_UTR	28653635	28653728	28653635	ID=Msa0881460-mRNA-1:five_prime_utr;Parent=Msa0881460-mRNA-1
chr6_1	CDS	28653729	28653816	28653729	ID=Msa0881460-mRNA-1:cds;Parent=Msa0881460-mRNA-1
chr6_1	CDS	28653979	28654012	28653979	ID=Msa0881460-mRNA-1:cds;Parent=Msa0881460-mRNA-1
chr6_1	CDS	28654099	28654160	28654099	ID=Msa0881460-mRNA-1:cds;Parent=Msa0881460-mRNA-1
chr6_1	CDS	28654508	28654560	28654508	ID=Msa0881460-mRNA-1:cds;Parent=Msa0881460-mRNA-1
chr6_1	CDS	28655124	28655225	28655124	ID=Msa0881460-mRNA-1:cds;Parent=Msa0881460-mRNA-1
chr6_1	three_prime_UTR	28655226	28655550	28655226	ID=Msa0881460-mRNA-1:three_prime_utr;Parent=Msa0881460-mRNA-1

Gene Sequence	>Msa0881460 ATGGGAGTTGAGAAGCAAATCGTTCGACCTGGAAACGGTCCTAAGCCAACTCCTGGTCAAAACGTCACTGTCCACTGCACCGGATACGGCAAAAACGGTGACCTTTCTCAGAAATTCTGGAGTACAAAAGATCCTGGCCAGAATCCATTCACTTTCAAAATCGGCAAAGGTTCTGTCATCAAAGGATGGGATGAAGGTGTCATTGGCATGCAAATCGGAGAAGTTGCTCGTCTTCGGTGCTCTCCTGATTATGCTTATGGCGCTAGTGGCTTTCCTGCTTGGGGAATACAACCCAACTCTGTTTTGGAGTTTGAGATTGAGGTCTTGAGTGTAGAATGA
Protein sequence	>Msa0881460 MGVEKQIVRPGNGPKPTPGQNVTVHCTGYGKNGDLSQKFWSTKDPGQNPFTFKIGKGSVIKGWDEGVIGMQIGEVARLRCSPDYAYGASGFPAWGIQPNSVLEFEIEVLSVE*